BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780904|ref|YP_003065317.1| tRNA/rRNA methyltransferase
[Candidatus Liberibacter asiaticus str. psy62]
         (268 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780904|ref|YP_003065317.1| tRNA/rRNA methyltransferase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 268

 Score =  546 bits (1406), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 268/268 (100%), Positives = 268/268 (100%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS
Sbjct: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN
Sbjct: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
           VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV
Sbjct: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180

Query: 181 KEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLR 240
           KEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLR
Sbjct: 181 KEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLR 240

Query: 241 GIVSTLDKFSRQSSRRNNVLLQKTEKSE 268
           GIVSTLDKFSRQSSRRNNVLLQKTEKSE
Sbjct: 241 GIVSTLDKFSRQSSRRNNVLLQKTEKSE 268


>gi|254780899|ref|YP_003065312.1| methionine aminopeptidase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 273

 Score = 23.5 bits (49), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 15/46 (32%), Positives = 23/46 (50%)

Query: 149 NPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
           +PL+PS+   Q  ++   E M N   SS K + +  T  T+   LS
Sbjct: 195 DPLYPSVGTFQEGMVFTIEPMLNVGGSSAKVLSDGWTAVTRDRSLS 240


>gi|254780721|ref|YP_003065134.1| pilus component protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 329

 Score = 23.5 bits (49), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 9/26 (34%), Positives = 14/26 (53%)

Query: 28  IGMVARAMWNFNLTQLRLVNPRDGWP 53
           +G  A ++W  NL Q R  + +  WP
Sbjct: 159 VGFCAPSVWISNLVQKRQSSIKRAWP 184


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.318    0.133    0.380 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 161,768
Number of Sequences: 1233
Number of extensions: 6479
Number of successful extensions: 15
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 4
length of query: 268
length of database: 328,796
effective HSP length: 72
effective length of query: 196
effective length of database: 240,020
effective search space: 47043920
effective search space used: 47043920
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 37 (18.9 bits)