Query         gi|254780905|ref|YP_003065318.1| glutamate racemase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 271
No_of_seqs    152 out of 1399
Neff          7.0 
Searched_HMMs 39220
Date          Mon May 30 02:39:07 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780905.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 PRK00865 glutamate racemase; P 100.0       0       0  564.3  30.7  253   12-270     1-254 (262)
  2 COG0796 MurI Glutamate racemas 100.0       0       0  540.9  27.5  254   11-270     3-258 (269)
  3 TIGR00067 glut_race glutamate  100.0       0       0  509.6  22.3  251   14-269     1-262 (262)
  4 pfam01177 Asp_Glu_race Asp/Glu 100.0 9.1E-29 2.3E-33  211.6  20.5  205   16-230     1-211 (212)
  5 PRK10200 putative racemase; Pr  99.9 5.8E-26 1.5E-30  193.0  13.5  206   14-233     2-227 (230)
  6 COG1794 RacX Aspartate racemas  99.9 6.8E-23 1.7E-27  172.6  14.6  203   14-233     2-226 (230)
  7 TIGR00035 asp_race aspartate r  99.6 1.7E-14 4.3E-19  116.7  13.6  213   13-234     2-232 (241)
  8 COG4126 Hydantoin racemase [Am  99.0 2.9E-07 7.5E-12   68.6  18.3  150   73-236    66-217 (230)
  9 COG3473 Maleate cis-trans isom  98.2 0.00028 7.1E-09   48.8  16.0  192   28-236    19-224 (238)
 10 PRK07475 hypothetical protein;  98.0 0.00074 1.9E-08   46.0  14.8  156   56-223    60-224 (243)
 11 PRK10200 putative racemase; Pr  96.0    0.15 3.9E-06   30.6  10.9  135  121-270     2-145 (230)
 12 TIGR02990 ectoine_eutA ectoine  96.0    0.16   4E-06   30.5  10.9  182   42-239    36-229 (239)
 13 COG1794 RacX Aspartate racemas  95.5    0.12   3E-06   31.3   8.1  105  121-233     2-115 (230)
 14 pfam01177 Asp_Glu_race Asp/Glu  95.4    0.26 6.5E-06   29.1  10.0   53  176-230    49-101 (212)
 15 PRK04965 nitric oxide reductas  95.2   0.073 1.9E-06   32.7   6.2   65   12-79      1-75  (378)
 16 COG4126 Hydantoin racemase [Am  93.3    0.42 1.1E-05   27.7   6.8   64   50-115   147-212 (230)
 17 TIGR01124 ilvA_2Cterm threonin  92.9    0.47 1.2E-05   27.4   6.6  173   72-259    86-310 (508)
 18 PRK01433 hscA chaperone protei  92.7    0.33 8.5E-06   28.3   5.5   52  180-231   297-351 (595)
 19 pfam06723 MreB_Mbl MreB/Mbl pr  90.4     0.6 1.5E-05   26.6   4.9   45  195-239   279-324 (327)
 20 PRK13928 rod shape-determining  88.7     1.2 3.1E-05   24.6   5.4   43  195-237   281-324 (325)
 21 PRK06820 type III secretion sy  88.4     2.2 5.5E-05   22.9   8.8  108   14-140   164-272 (445)
 22 PTZ00186 heat shock 70 kDa pre  87.6     1.2   3E-05   24.7   4.7   44  188-231   350-396 (657)
 23 TIGR03496 FliI_clade1 flagella  87.4     2.5 6.3E-05   22.5   8.9  109   14-141   138-247 (411)
 24 CHL00094 dnaK heat shock prote  87.3     1.1 2.9E-05   24.8   4.4   44  189-232   326-372 (622)
 25 PRK09754 phenylpropionate diox  87.2     1.2   3E-05   24.7   4.5   41   13-53      3-43  (400)
 26 PRK13930 rod shape-determining  86.8     1.3 3.3E-05   24.4   4.5   45  195-239   285-332 (336)
 27 PRK00290 dnaK molecular chaper  86.7     1.6   4E-05   23.9   4.9   44  188-231   325-371 (631)
 28 pfam07302 AroM AroM protein. T  86.5     2.8 7.1E-05   22.2  12.0  180   21-234    33-220 (221)
 29 PRK13927 rod shape-determining  86.4     1.8 4.7E-05   23.4   5.2   47  195-241   287-336 (338)
 30 PRK05183 hscA chaperone protei  86.4     1.8 4.5E-05   23.5   5.1   44  188-231   330-376 (621)
 31 cd01136 ATPase_flagellum-secre  86.3     2.8 7.2E-05   22.1   8.6  108   14-140    70-178 (326)
 32 PRK04117 consensus              85.7       3 7.7E-05   22.0   8.0  207   15-234    52-299 (309)
 33 cd06332 PBP1_aromatic_compound  85.5     3.1 7.9E-05   21.9  11.0   56   39-106    39-94  (333)
 34 PRK13512 coenzyme A disulfide   85.3     1.9 4.8E-05   23.4   4.7   40   15-54      3-42  (438)
 35 PRK13410 molecular chaperone D  85.0     1.7 4.4E-05   23.6   4.5   44  188-231   325-371 (719)
 36 cd06359 PBP1_Nba_like Type I p  84.6     3.4 8.7E-05   21.6  10.3   55   40-106    40-94  (333)
 37 pfam00012 HSP70 Hsp70 protein.  82.9     2.2 5.7E-05   22.8   4.3   44  189-232   323-369 (598)
 38 PRK09099 type III secretion sy  82.8       4  0.0001   21.1   9.9  109   14-141   164-273 (441)
 39 PTZ00009 heat shock 70 kDa pro  81.7     2.9 7.4E-05   22.1   4.5   45  188-232   329-377 (657)
 40 PRK02812 ribose-phosphate pyro  81.3     4.6 0.00012   20.8   9.3  160   64-233   126-320 (331)
 41 KOG0781 consensus               81.2     3.8 9.7E-05   21.3   5.0   31   66-97    397-427 (587)
 42 PRK13411 molecular chaperone D  80.9     3.3 8.4E-05   21.7   4.6   44  188-231   324-371 (655)
 43 PRK02118 V-type ATP synthase s  79.2     5.3 0.00014   20.3   9.6  108   14-140   141-250 (432)
 44 PRK10481 hypothetical protein;  78.6     5.5 0.00014   20.2  14.3  181   21-234    35-223 (224)
 45 pfam06506 PrpR_N Propionate ca  78.3     5.6 0.00014   20.2  14.8  131   63-231    20-158 (169)
 46 PRK05038 consensus              77.4       6 0.00015   20.0   8.7  206   16-234    53-304 (315)
 47 COG1578 Uncharacterized conser  76.3     6.4 0.00016   19.8   5.3   16   33-48    146-161 (285)
 48 COG1252 Ndh NADH dehydrogenase  76.2     6.3 0.00016   19.8   4.8   58   12-69      2-68  (405)
 49 PRK01999 consensus              75.8     6.6 0.00017   19.7  11.2  194   29-235    74-301 (311)
 50 cd01135 V_A-ATPase_B V/A-type   75.0     6.9 0.00018   19.6   9.2  110   14-141    70-186 (276)
 51 TIGR03497 FliI_clade2 flagella  74.6     7.1 0.00018   19.5   9.3  107   14-140   138-246 (413)
 52 PRK13929 rod-share determining  73.7     5.9 0.00015   20.0   4.2   47  195-241   284-331 (335)
 53 cd06360 PBP1_alkylbenzenes_lik  73.5     7.5 0.00019   19.3  10.8   56   39-106    39-94  (336)
 54 pfam02548 Pantoate_transf Keto  71.3     8.4 0.00021   19.0   6.9   67   29-106    68-136 (261)
 55 PRK09564 coenzyme A disulfide   69.0     9.4 0.00024   18.7   4.4   40   15-54      2-41  (443)
 56 PRK01506 consensus              68.9     9.5 0.00024   18.7  12.6  205   16-234    59-307 (317)
 57 KOG1387 consensus               68.7     8.2 0.00021   19.1   4.0   66   11-82     41-115 (465)
 58 PRK07721 fliI flagellum-specif  68.6     9.6 0.00024   18.6   8.8  107   14-139   157-264 (435)
 59 TIGR01188 drrA daunorubicin re  68.5     3.4 8.7E-05   21.6   2.0   58  173-235   160-217 (343)
 60 TIGR03169 Nterm_to_SelD pyridi  68.0     9.3 0.00024   18.7   4.1   47   16-62      2-58  (364)
 61 COG3958 Transketolase, C-termi  67.5      10 0.00026   18.5  11.5   74   66-141    15-93  (312)
 62 PRK04690 murD UDP-N-acetylmura  67.3      10 0.00026   18.5   5.0  114    1-130     1-125 (468)
 63 COG2515 Acd 1-aminocyclopropan  67.2      10 0.00026   18.5   8.3   94   10-107   113-213 (323)
 64 cd04105 SR_beta Signal recogni  67.1      10 0.00026   18.4   5.8   67   15-87     49-119 (203)
 65 PRK05279 N-acetylglutamate syn  66.9      10 0.00026   18.4   4.2   81  177-262   326-410 (441)
 66 pfam09949 DUF2183 Uncharacteri  66.1      11 0.00027   18.3   5.2   56   16-82     40-97  (100)
 67 cd06343 PBP1_ABC_ligand_bindin  65.7      11 0.00028   18.3   6.6   56   39-107    48-104 (362)
 68 PRK04554 consensus              65.7      11 0.00028   18.3   9.5  193   29-235    77-307 (327)
 69 pfam04551 GcpE GcpE protein. I  64.4      12 0.00029   18.1   8.8  198   58-271    28-251 (345)
 70 pfam01118 Semialdhyde_dh Semia  64.3     8.9 0.00023   18.8   3.5   32   16-48      2-34  (121)
 71 cd06366 PBP1_GABAb_receptor Li  63.4      12 0.00031   18.0   9.0   60   36-106    35-95  (350)
 72 cd06337 PBP1_ABC_ligand_bindin  62.0      13 0.00032   17.8  12.9   55   40-106    44-98  (357)
 73 cd06328 PBP1_SBP_like_2 Peripl  61.8      13 0.00033   17.8  10.0   56   39-106    42-97  (333)
 74 PRK01259 ribose-phosphate pyro  61.0      13 0.00034   17.7  10.8  191   28-233    70-298 (309)
 75 cd04509 PBP1_ABC_transporter_G  59.7      14 0.00035   17.6   8.3  155   40-226    42-229 (299)
 76 PRK06002 fliI flagellum-specif  59.4      14 0.00036   17.5   8.9  106   15-140   167-273 (450)
 77 TIGR00130 frhD coenzyme F420-r  59.1      14 0.00036   17.5   4.3   79   13-93     36-134 (162)
 78 PRK00366 ispG 4-hydroxy-3-meth  58.9      14 0.00037   17.5  12.5  198   58-271    39-262 (367)
 79 PRK00934 ribose-phosphate pyro  58.8      14 0.00037   17.5   4.3  187   28-231    68-284 (286)
 80 PRK06315 type III secretion sy  58.4      15 0.00037   17.4   8.6  107   14-139   165-273 (442)
 81 COG0443 DnaK Molecular chapero  58.0      15 0.00038   17.4   5.8   45  189-233   307-354 (579)
 82 TIGR01278 DPOR_BchB light-inde  56.5      16  0.0004   17.2   9.9  192   16-256   169-368 (562)
 83 PRK11027 hypothetical protein;  55.6      16 0.00041   17.1   3.6   76   44-126    11-94  (110)
 84 PRK06793 fliI flagellum-specif  55.2      17 0.00042   17.1   9.5  108   14-140   157-265 (432)
 85 pfam02601 Exonuc_VII_L Exonucl  55.1      17 0.00042   17.1   8.0   69   14-86     15-85  (295)
 86 PRK00129 upp uracil phosphorib  53.9      17 0.00044   16.9   5.0   99  106-222    82-181 (208)
 87 TIGR02350 prok_dnaK chaperone   53.2      18 0.00045   16.9   4.7   44  186-229   320-366 (598)
 88 COG4995 Uncharacterized protei  52.9      18 0.00046   16.8   3.5   26   56-81    141-166 (420)
 89 COG4643 Uncharacterized protei  52.9      17 0.00043   17.0   3.3   10  205-214   241-250 (366)
 90 PRK04663 murD UDP-N-acetylmura  52.8      18 0.00046   16.8   5.3  121   14-148     8-137 (438)
 91 COG0821 gcpE 1-hydroxy-2-methy  52.5      18 0.00046   16.8  15.1   47   59-108    34-81  (361)
 92 pfam04412 DUF521 Protein of un  52.4      14 0.00035   17.6   2.8   61  170-232   267-334 (397)
 93 PRK12767 carbamoyl phosphate s  52.4      18 0.00047   16.8   8.2  116   16-140     4-138 (325)
 94 PRK05647 purN phosphoribosylgl  52.3      12 0.00031   18.0   2.4   93   14-113     2-114 (200)
 95 TIGR00542 hxl6Piso_put hexulos  52.1      17 0.00044   16.9   3.2  176   47-234    76-273 (290)
 96 PRK00258 aroE shikimate 5-dehy  51.3      19 0.00048   16.7   7.0   80   81-164    86-165 (275)
 97 COG0381 WecB UDP-N-acetylgluco  50.5      19  0.0005   16.6   5.1   59   50-111    68-126 (383)
 98 KOG2949 consensus               49.8      20 0.00051   16.5   5.0   43  221-263   260-303 (306)
 99 PRK13148 consensus              49.6      20 0.00051   16.5   4.4   29   14-42      2-31  (225)
100 TIGR01464 hemE uroporphyrinoge  49.2      15 0.00038   17.3   2.5   28  210-238   289-316 (351)
101 KOG0090 consensus               49.1      21 0.00052   16.4   6.2   26   27-52     94-123 (238)
102 TIGR01133 murG undecaprenyldip  48.9      21 0.00053   16.4   3.9  109   14-125     6-149 (368)
103 cd06557 KPHMT-like Ketopantoat  48.8      21 0.00053   16.4   5.3   51   50-106    80-132 (254)
104 pfam04219 DUF413 Protein of un  48.8      21 0.00053   16.4   3.5   76   44-126     2-85  (94)
105 PRK13176 consensus              48.2      18 0.00045   16.9   2.8   22   15-36      2-24  (216)
106 cd00717 URO-D Uroporphyrinogen  46.1      18 0.00047   16.8   2.6   48  178-226   215-263 (335)
107 pfam05621 TniB Bacterial TniB   45.8      23 0.00059   16.1  13.4   99    5-107    54-186 (302)
108 PRK00115 hemE uroporphyrinogen  45.6      22 0.00055   16.3   2.9   14  122-135   141-154 (347)
109 COG1911 RPL30 Ribosomal protei  45.3      23  0.0006   16.1   4.3   57   71-128    30-89  (100)
110 cd06556 ICL_KPHMT Members of t  44.6      24 0.00061   16.0  11.1   43  174-220   153-195 (240)
111 TIGR02320 PEP_mutase phosphoen  44.3      20  0.0005   16.6   2.5   68   15-83     73-150 (272)
112 PRK10926 ferredoxin-NADP reduc  44.2      24 0.00062   16.0   5.8   25  119-143   133-157 (248)
113 TIGR01484 HAD-SF-IIB HAD-super  44.2      24 0.00062   16.0   4.0   37   50-86     11-48  (261)
114 PRK10684 HCP oxidoreductase, N  43.8      25 0.00063   15.9   5.0   52    3-61    102-156 (335)
115 COG0407 HemE Uroporphyrinogen-  43.4      25 0.00064   15.9   2.9   36  177-212   226-262 (352)
116 cd01355 AcnX Putative Aconitas  43.0      15 0.00037   17.4   1.7   55  171-227   260-321 (389)
117 TIGR01302 IMP_dehydrog inosine  42.7      23 0.00058   16.1   2.6   71  186-258   246-328 (476)
118 PRK11382 frlB fructoselysine-6  42.6      26 0.00065   15.8   4.0   40   66-105    41-82  (347)
119 PRK12597 F0F1 ATP synthase sub  42.4      26 0.00066   15.8   9.0   67   14-91    142-212 (459)
120 pfam07355 GRDB Glycine/sarcosi  41.9      26 0.00067   15.7   3.7  103   11-131    22-140 (349)
121 PRK05688 fliI flagellum-specif  41.7      27 0.00068   15.7   9.8   72   14-96    169-241 (451)
122 COG1086 Predicted nucleoside-d  41.7      27 0.00068   15.7  12.9  196   10-213   113-349 (588)
123 pfam02112 PDEase_II cAMP phosp  41.2      19 0.00049   16.6   2.1   23  178-200   216-239 (323)
124 COG4956 Integral membrane prot  41.0      22 0.00055   16.3   2.3   17  205-221   219-235 (356)
125 PRK08472 fliI flagellum-specif  40.9      27 0.00069   15.6   7.6  107   14-140   159-266 (435)
126 PRK00311 panB 3-methyl-2-oxobu  40.0      28 0.00072   15.5   5.3   66   30-106    70-137 (266)
127 cd06330 PBP1_Arsenic_SBP_like   39.9      28 0.00072   15.5  11.0   57   39-107    41-97  (346)
128 TIGR00040 yfcE phosphodiestera  39.7      11 0.00029   18.2   0.7   33  189-227   113-145 (170)
129 pfam03721 UDPG_MGDP_dh_N UDP-g  39.7      28 0.00072   15.5   9.9  150   15-202     2-176 (185)
130 COG3947 Response regulator con  39.3      29 0.00073   15.5   2.7   35   21-57     55-89  (361)
131 PRK11678 putative chaperone; P  39.1      29 0.00074   15.4   7.5   41  191-231   399-442 (450)
132 cd06342 PBP1_ABC_LIVBP_like Ty  39.1      29 0.00074   15.4  10.7  151   39-222    41-222 (334)
133 pfam01488 Shikimate_DH Shikima  38.9      29 0.00075   15.4   4.9   94  117-223     9-108 (134)
134 KOG2731 consensus               38.8      16  0.0004   17.2   1.3   15  216-230   276-290 (378)
135 PRK08972 fliI flagellum-specif  38.7      29 0.00075   15.4  10.1   71   14-95    161-232 (440)
136 PRK13527 glutamine amidotransf  38.7      29 0.00075   15.4   3.4   20   76-96     43-62  (196)
137 PRK09483 response regulator; P  38.5      30 0.00075   15.4   3.5  104   64-170    13-123 (216)
138 PRK07594 type III secretion sy  38.4      30 0.00076   15.4   9.5  106   14-139   156-263 (433)
139 pfam06057 VirJ Bacterial virul  38.2      30 0.00076   15.4   6.8   70   14-86      2-76  (192)
140 PRK11475 DNA-binding transcrip  38.0      30 0.00077   15.3   2.8   26   22-47     52-77  (205)
141 PRK07196 fliI flagellum-specif  38.0      30 0.00077   15.3   9.8  107   14-139   156-263 (434)
142 PRK01132 consensus              37.8      30 0.00077   15.3   5.0   55  179-233   218-284 (286)
143 COG0155 CysI Sulfite reductase  37.8      17 0.00044   17.0   1.4   74  191-270   204-281 (510)
144 cd06338 PBP1_ABC_ligand_bindin  37.3      31 0.00079   15.3   8.5   56   39-106    45-100 (345)
145 PRK13171 consensus              37.3      31 0.00079   15.3   3.2   22   14-35      2-24  (200)
146 PRK11544 hycI hydrogenase 3 ma  37.1      21 0.00054   16.4   1.8   33   77-111    32-64  (156)
147 PRK10403 transcriptional regul  37.0      31 0.00079   15.2   2.9   15  257-271   186-200 (215)
148 TIGR03566 FMN_reduc_MsuE FMN r  36.0      32 0.00083   15.1   8.0  139   28-187    18-167 (174)
149 PRK07960 fliI flagellum-specif  35.7      33 0.00083   15.1   9.3   69   14-93    176-245 (455)
150 TIGR03498 FliI_clade3 flagella  35.5      33 0.00084   15.1   8.8  108   14-140   141-249 (418)
151 COG1570 XseA Exonuclease VII,   35.3      33 0.00084   15.1   8.2   68   14-88    136-205 (440)
152 COG1936 Predicted nucleotide k  35.3      24 0.00061   16.0   1.8   20  122-141     2-21  (180)
153 PRK02458 ribose-phosphate pyro  34.8      34 0.00086   15.0  13.2  190   29-235    80-308 (323)
154 TIGR02477 PFKA_PPi diphosphate  34.6      34 0.00087   15.0   4.4   94   13-110    74-206 (566)
155 PRK01368 murD UDP-N-acetylmura  34.2      35 0.00088   14.9   8.3  121   10-147     3-132 (450)
156 COG3946 VirJ Type IV secretory  33.2      36 0.00091   14.8   7.7   81    5-86    251-334 (456)
157 PTZ00318 NADH dehydrogenase; P  33.1      29 0.00075   15.4   2.0   58    7-67      4-71  (514)
158 TIGR02708 L_lactate_ox L-lacta  33.0      36 0.00092   14.8   2.8   15   33-47     24-38  (368)
159 COG5212 PDE1 Low-affinity cAMP  33.0      36 0.00092   14.8   4.2   25  176-200   242-267 (356)
160 KOG1579 consensus               32.6      37 0.00093   14.8  11.4   62   13-90     16-78  (317)
161 PRK00771 signal recognition pa  32.5      37 0.00094   14.8   6.5   68   64-133   114-190 (433)
162 TIGR03568 NeuC_NnaA UDP-N-acet  31.8      38 0.00096   14.7   5.5   52   58-110    75-126 (365)
163 PRK12838 carbamoyl phosphate s  31.7      38 0.00096   14.7   3.9   14  187-200   185-198 (356)
164 cd06321 PBP1_ABC_sugar_binding  31.4      38 0.00098   14.6   4.0  193   27-236    16-251 (271)
165 PRK13146 hisH imidazole glycer  30.9      39 0.00099   14.6   4.2   29   14-42      2-31  (208)
166 PRK13147 consensus              30.7      39   0.001   14.6   2.6   21   15-35      2-23  (211)
167 KOG3120 consensus               30.7      39   0.001   14.6   2.4   26   93-118    74-100 (256)
168 cd06312 PBP1_ABC_sugar_binding  30.7      39   0.001   14.6   4.0   57   38-107    30-88  (271)
169 PRK07199 phosphoribosylpyropho  30.5      39   0.001   14.5   4.9  196   27-235    70-295 (301)
170 pfam08821 CGGC CGGC domain. Th  30.2      40   0.001   14.5   4.9   37  185-223    59-106 (107)
171 PRK08645 bifunctional homocyst  30.1      40   0.001   14.5  10.4   53   49-105   113-170 (608)
172 KOG1576 consensus               30.1      40   0.001   14.5   8.9   57   26-87     83-146 (342)
173 PRK05259 consensus              29.8      41   0.001   14.5  11.6  189   31-234    72-300 (310)
174 PRK09453 phosphodiesterase; Pr  29.2      13 0.00034   17.7  -0.3   30  190-225   117-146 (183)
175 TIGR01275 ACC_deam_rel pyridox  29.0      42  0.0011   14.4   3.3   36  219-255   291-328 (339)
176 PRK03806 murD UDP-N-acetylmura  29.0      42  0.0011   14.4   5.5  121   13-148     6-134 (438)
177 pfam10442 FIST_C FIST C domain  28.8      42  0.0011   14.4   5.9   89   13-107    24-128 (137)
178 COG0622 Predicted phosphoester  28.7      20 0.00052   16.5   0.5   32  189-226   107-138 (172)
179 COG3560 FMR2 Predicted oxidore  28.7      26 0.00065   15.8   1.0   62   27-97      5-69  (200)
180 PRK04040 adenylate kinase; Pro  28.7      42  0.0011   14.3   2.5   27   21-47     11-38  (189)
181 KOG1529 consensus               28.7      28 0.00071   15.5   1.2   62  195-268   199-260 (286)
182 TIGR02456 treS_nterm trehalose  28.6      43  0.0011   14.3   2.2   29   19-47    356-384 (560)
183 pfam00481 PP2C Protein phospha  28.6      43  0.0011   14.3   3.5   52   15-71     36-87  (253)
184 TIGR01331 bisphos_cysQ 3'(2'),  28.5      28 0.00071   15.6   1.2   21   88-108    45-65  (263)
185 COG0787 Alr Alanine racemase [  28.1      43  0.0011   14.3   4.8   62   29-105    18-80  (360)
186 cd06323 PBP1_ribose_binding Pe  28.0      44  0.0011   14.3   3.4   79   15-107     1-86  (268)
187 PRK13462 acid phosphatase; Pro  27.8      44  0.0011   14.2   6.5   41  175-215   121-161 (203)
188 PRK06936 type III secretion sy  27.4      45  0.0011   14.2   9.0  107   14-139   163-270 (439)
189 TIGR01968 minD_bact septum sit  27.3      19 0.00048   16.7   0.1   54   92-146   195-248 (272)
190 pfam11084 DUF2621 Protein of u  27.2      34 0.00088   15.0   1.5   19   22-40     22-40  (141)
191 KOG1374 consensus               26.9      46  0.0012   14.1   2.3   71   20-97    146-220 (448)
192 PRK04923 ribose-phosphate pyro  26.8      46  0.0012   14.1  12.2  194   31-234    78-308 (319)
193 COG0763 LpxB Lipid A disacchar  26.7      46  0.0012   14.1   6.9   84   25-110    17-121 (381)
194 cd06311 PBP1_ABC_sugar_binding  26.7      46  0.0012   14.1   4.5   40   64-106    49-90  (274)
195 COG2894 MinD Septum formation   26.7      42  0.0011   14.4   1.8   16  253-268   256-271 (272)
196 TIGR00095 TIGR00095 putative m  26.7      46  0.0012   14.1   5.8   40  121-164    58-97  (210)
197 cd01132 F1_ATPase_alpha F1 ATP  26.5      46  0.0012   14.1   9.1  110   14-142    70-182 (274)
198 PRK08324 short chain dehydroge  26.5      46  0.0012   14.1   5.1   42   16-57    157-201 (676)
199 TIGR00339 sopT sulfate adenyly  26.5      18 0.00047   16.7  -0.0   18  129-146   263-281 (424)
200 cd01976 Nitrogenase_MoFe_alpha  26.4      46  0.0012   14.1   4.4   13   12-24     30-42  (421)
201 COG0434 SgcQ Predicted TIM-bar  26.2      47  0.0012   14.1   4.3  172   50-238    22-227 (263)
202 pfam05378 Hydant_A_N Hydantoin  25.7      39   0.001   14.6   1.6   28  170-201   129-156 (175)
203 PRK04457 spermidine synthase;   25.6      48  0.0012   14.0   2.1  164   39-220    27-202 (262)
204 KOG3935 consensus               25.5      48  0.0012   14.0   2.4   34   32-65     96-133 (446)
205 cd06306 PBP1_TorT-like TorT-li  25.5      48  0.0012   14.0   3.6   40   66-107    48-87  (268)
206 pfam01583 APS_kinase Adenylyls  25.2      49  0.0012   13.9   6.1   79   21-101    11-98  (157)
207 TIGR00222 panB 3-methyl-2-oxob  25.0      49  0.0013   13.9   2.7  152   37-221    36-204 (267)
208 cd02040 NifH NifH gene encodes  25.0      49  0.0013   13.9   5.1   37  195-234   204-242 (270)
209 TIGR01367 pyrE_Therm orotate p  24.9      49  0.0013   13.9   2.1   16   28-43     76-91  (205)
210 cd06335 PBP1_ABC_ligand_bindin  24.9      50  0.0013   13.9   8.4   57   39-107    41-97  (347)
211 cd01536 PBP1_ABC_sugar_binding  24.8      50  0.0013   13.9   4.0   78   65-145    45-151 (267)
212 COG4475 Uncharacterized protei  24.8      50  0.0013   13.9   4.0   57   52-110    41-100 (180)
213 PRK05922 type III secretion sy  24.8      50  0.0013   13.9   8.8  108   14-140   158-266 (434)
214 TIGR01993 Pyr-5-nucltdase pyri  24.7      50  0.0013   13.9   4.4   30  240-270    99-128 (205)
215 cd06346 PBP1_ABC_ligand_bindin  24.7      50  0.0013   13.9   9.0   56   39-106    41-97  (312)
216 cd00315 Cyt_C5_DNA_methylase C  24.7      36 0.00093   14.8   1.2   28   15-47      3-30  (275)
217 TIGR01036 pyrD_sub2 dihydrooro  24.4      47  0.0012   14.1   1.7   23  116-138   244-267 (370)
218 COG0031 CysK Cysteine synthase  24.4      51  0.0013   13.8   5.3   37  190-227   168-209 (300)
219 pfam01866 Diphthamide_syn Puta  24.3      51  0.0013   13.8   4.8   29   27-60     11-39  (300)
220 COG4914 Predicted nucleotidylt  24.3      51  0.0013   13.8   2.0   16   67-83     13-28  (190)
221 PRK00889 adenylylsulfate kinas  24.2      51  0.0013   13.8   5.8   88   12-101     1-100 (175)
222 PRK06705 argininosuccinate lya  24.0      51  0.0013   13.8   2.0   85  180-271   142-227 (502)
223 PRK03659 glutathione-regulated  24.0      51  0.0013   13.8   3.7   86   64-155   411-499 (602)
224 TIGR01366 serC_3 phosphoserine  23.9      30 0.00078   15.3   0.7   57   15-80    157-221 (362)
225 PRK11106 queuosine biosynthesi  23.5      52  0.0013   13.7   4.8   53   12-71      1-53  (231)
226 COG0035 Upp Uracil phosphoribo  23.4      53  0.0013   13.7   4.9  146   56-220    25-181 (210)
227 pfam03618 DUF299 Domain of unk  23.4      53  0.0013   13.7   6.4  104   25-143    12-119 (255)
228 CHL00095 clpC Clp protease ATP  23.3      53  0.0013   13.7   8.4   76   10-88    198-281 (823)
229 PRK13151 consensus              23.2      53  0.0014   13.7   3.2   57   15-97      2-59  (195)
230 COG3623 SgaU Putative L-xylulo  23.1      53  0.0014   13.7   5.0  116   27-151    58-182 (287)
231 COG0281 SfcA Malic enzyme [Ene  23.1      53  0.0014   13.7   8.9  115   13-129   199-324 (432)
232 COG4844 Uncharacterized protei  23.0      54  0.0014   13.7   5.1   51  188-238    25-76  (78)
233 COG2197 CitB Response regulato  22.9      54  0.0014   13.6   4.1   32   14-45     47-81  (211)
234 cd06367 PBP1_iGluR_NMDA N-term  22.9      54  0.0014   13.6   3.9   46   61-108    49-97  (362)
235 PRK13152 hisH imidazole glycer  22.8      54  0.0014   13.6   3.1   21   16-37      2-23  (201)
236 TIGR01482 SPP-subfamily Sucros  22.6      55  0.0014   13.6   3.3   35   60-97     16-53  (247)
237 TIGR00589 ogt methylated-DNA-[  22.5      55  0.0014   13.6   3.2   38   48-86     12-55  (80)
238 PRK07609 CDP-6-deoxy-delta-3,4  22.5      55  0.0014   13.6   8.0   90  174-270   217-322 (337)
239 PRK12549 shikimate 5-dehydroge  22.4      55  0.0014   13.6   6.9   78   82-163    92-169 (284)
240 PRK08195 4-hydroxy-2-ketovaler  22.4      55  0.0014   13.6   4.0   10   14-23      2-11  (337)
241 pfam10977 DUF2797 Protein of u  22.4      18 0.00046   16.8  -0.7   16  149-164   105-120 (233)
242 cd01538 PBP1_ABC_xylose_bindin  22.2      56  0.0014   13.6   4.5   40   64-106    44-85  (288)
243 cd04502 SGNH_hydrolase_like_7   22.1      56  0.0014   13.5   7.2   60   14-75     21-87  (171)
244 cd06305 PBP1_methylthioribose_  22.0      56  0.0014   13.5   4.7   41   64-107    44-86  (273)
245 COG0826 Collagenase and relate  22.0      56  0.0014   13.5  11.6  118   19-145     9-137 (347)
246 cd03007 PDI_a_ERp29_N PDIa fam  22.0      38 0.00097   14.7   0.9   33   30-66     12-44  (116)
247 PRK00286 xseA exodeoxyribonucl  22.0      56  0.0014   13.5   6.9   66   14-86    136-203 (443)
248 cd00156 REC Signal receiver do  21.9      56  0.0014   13.5   3.2   36   64-102     9-44  (113)
249 COG1232 HemY Protoporphyrinoge  21.9      56  0.0014   13.5   4.0   30   15-44      2-31  (444)
250 PRK11559 garR tartronate semia  21.9      56  0.0014   13.5   9.3   22   15-36      3-24  (295)
251 pfam07912 ERp29_N ERp29, N-ter  21.9      38 0.00098   14.6   0.9   34   29-66     14-47  (126)
252 PRK09390 fixJ response regulat  21.8      57  0.0014   13.5   3.5   63   64-129    15-84  (202)
253 TIGR03305 alt_F1F0_F1_bet alte  21.7      57  0.0015   13.5   8.5   67   14-91    139-209 (449)
254 cd02810 DHOD_DHPD_FMN Dihydroo  21.6      29 0.00075   15.4   0.2   24  184-207   182-205 (289)
255 COG1072 CoaA Panthothenate kin  21.5      57  0.0015   13.5   3.9  141  122-270    84-236 (283)
256 cd06322 PBP1_ABC_sugar_binding  21.5      58  0.0015   13.5   3.8  189   28-236    17-248 (267)
257 TIGR03307 PhnP phosphonate met  21.4      58  0.0015   13.5   2.2   16  187-202   174-189 (249)
258 pfam09439 SRPRB Signal recogni  21.4      58  0.0015   13.4   6.5   10  121-130    49-58  (181)
259 KOG2420 consensus               21.3      32 0.00082   15.1   0.4   12   24-35     48-59  (382)
260 cd06318 PBP1_ABC_sugar_binding  21.3      58  0.0015   13.4   4.7   41   64-107    44-86  (282)
261 cd02027 APSK Adenosine 5'-phos  21.1      59  0.0015   13.4   6.5   83   21-105     8-99  (149)
262 TIGR01506 ribC_arch riboflavin  21.0      36 0.00093   14.8   0.6   47   89-135    16-70  (152)
263 COG0541 Ffh Signal recognition  20.9      59  0.0015   13.4   5.5   65   65-131   118-193 (451)
264 COG0683 LivK ABC-type branched  20.9      59  0.0015   13.4   9.3  211   39-268    52-282 (366)
265 pfam01396 zf-C4_Topoisom Topoi  20.9      29 0.00075   15.4   0.1   10  195-204    20-29  (39)
266 KOG4549 consensus               20.9      59  0.0015   13.4   3.3   73   62-138    47-122 (144)
267 TIGR00520 asnASE_II L-asparagi  20.9      59  0.0015   13.4   4.3   77   26-111    54-146 (360)
268 TIGR00114 lumazine-synth 6,7-d  20.8      59  0.0015   13.4   3.3   19  190-208    64-89  (148)
269 PRK10651 transcriptional regul  20.8      36 0.00092   14.8   0.6   15  257-271   188-202 (216)
270 COG5245 DYN1 Dynein, heavy cha  20.8      27 0.00069   15.6  -0.1   53   39-91   1563-1625(3164)
271 PRK08149 ATP synthase SpaL; Va  20.6      60  0.0015   13.3   9.3  107   14-139   151-258 (427)
272 KOG1268 consensus               20.6      60  0.0015   13.3   1.9   28   77-104   356-385 (670)
273 pfam03446 NAD_binding_2 NAD bi  20.4      60  0.0015   13.3   9.5   21   15-35      3-23  (163)
274 TIGR02637 RhaS rhamnose ABC tr  20.4      61  0.0015   13.3   4.7   96   30-137    21-142 (307)
275 PRK13690 hypothetical protein;  20.2      61  0.0016   13.3   4.4   32   53-84     44-75  (183)
276 cd06378 PBP1_iGluR_NMDA_NR2 N-  20.1      61  0.0016   13.3   5.7  151   38-201    34-203 (362)

No 1  
>PRK00865 glutamate racemase; Provisional
Probab=100.00  E-value=0  Score=564.28  Aligned_cols=253  Identities=31%  Similarity=0.511  Sum_probs=239.5

Q ss_pred             CCCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHH
Q ss_conf             48870798779105899999999689998999941578989898989999999999999862169848997176202633
Q gi|254780905|r   12 LQNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLI   91 (271)
Q Consensus        12 ~~~~IgifDSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~   91 (271)
                      |++||||||||+|||||++++++.+|+++|+|+|||+|+|||+||+++|++++.++++||.+ ++|++|||||||||+.+
T Consensus         1 ~~~pIGiFDSGvGGLtVl~~l~~~lP~e~~iY~gD~a~~PYG~ks~~~I~~~~~~i~~~l~~-~~~k~iViACNTasa~a   79 (262)
T PRK00865          1 MNAPIGVFDSGVGGLTVLREIRRQLPDEHIIYVGDTARFPYGEKSEEEIRERTLEIVEFLLE-QGVKMLVIACNTASAVA   79 (262)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHH-CCCCEEEEECCCHHHHH
T ss_conf             99978998689887999999999789999899823788998989999999999999999997-79989998167378999


Q ss_pred             HHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEECHHHHCCHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf             89998625777654454799999984078832998506773170168998512788579770564225787766426776
Q gi|254780905|r   92 KDELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYACGIKI  171 (271)
Q Consensus        92 ~~~l~~~~~~ipiigii~~~~~a~~~~~~~~VgiLAT~~Ti~s~~y~~~i~~~~~~~~v~~~~~~~lv~~iE~~~~~~~~  171 (271)
                      ++.||++| ++|||||+|++++|+..+++++||||||++|++|++|++++++++++++|..++||.||++||+++.+.  
T Consensus        80 l~~lr~~~-~iPiiGi~P~ik~A~~~s~~~~IgVlaT~~Ti~S~~y~~~i~~~~~~~~V~~~~cp~Lv~liE~g~~~~--  156 (262)
T PRK00865         80 LEDLRERL-DIPVVGIVPAIKPAAALTRNGRIGVLATPGTVKSAAYRDLIARFAPDCEVESLACPELVPLVEEGILGG--  156 (262)
T ss_pred             HHHHHHHC-CCCEEEECHHHHHHHHHCCCCEEEEEEEHHHHHCHHHHHHHHHHCCCCEEEECCCHHHHHHHHCCCCCC--
T ss_conf             99999647-997798448999999817798289997179863669999999868998999658715999998356787--


Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHCCCCCCC-CCCCEEE
Q ss_conf             979999999998465410588789980563588999999864899789828589999999998642733457-7887799
Q gi|254780905|r  172 KEDEIKKEIEGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSPWPVDWLDNSDSIARRARCLLPRINTHQTR-VFDDHAL  250 (271)
Q Consensus       172 ~~~~~~~~l~~~l~~~~~~~~D~iILGCTHyPll~~~i~~~~~~~v~iIDpa~~va~~~~~~L~~~~~~~~~-~~~~~~f  250 (271)
                        +..+..++.||.++..+++|++|||||||||+++.|++++|++|++|||++++|++++++|.++++.+.. ..+...|
T Consensus       157 --~~~~~~l~~~L~~~~~~~iDtlILGCTHYP~l~~~i~~~~~~~v~iIDpa~~vA~~v~~~L~~~~l~~~~~~~~~~~f  234 (262)
T PRK00865        157 --PVLLEVLREYLAPLLAAGIDTLVLGCTHYPLLKPEIQQVLGEGVTLIDSGEAIARRVARLLEESGLLNPPDAPPAHRF  234 (262)
T ss_pred             --HHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCEEE
T ss_conf             --999999999987764069988997676707789999997599989972889999999999987686667899987699


Q ss_pred             EECCCHHHHHHHHHHHCCCC
Q ss_conf             96699799999999856888
Q gi|254780905|r  251 FLSGKPDIAMRRLMQGFGLK  270 (271)
Q Consensus       251 ~~T~~~~~~~~~~~~~~G~~  270 (271)
                      |+||+++.|.+.+.+|||++
T Consensus       235 ~tT~~~~~f~~~a~~flG~~  254 (262)
T PRK00865        235 TTTGDPEAFKRLAQRWLGFS  254 (262)
T ss_pred             EECCCHHHHHHHHHHHCCCC
T ss_conf             97999999999999976999


No 2  
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=100.00  E-value=0  Score=540.89  Aligned_cols=254  Identities=32%  Similarity=0.502  Sum_probs=237.0

Q ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHH
Q ss_conf             34887079877910589999999968999899994157898989898999999999999986216984899717620263
Q gi|254780905|r   11 KLQNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTL   90 (271)
Q Consensus        11 ~~~~~IgifDSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~   90 (271)
                      ..++||||||||||||||+|+++++||+++|||+|||+|+|||+||+++|++++.++++|+++++ ++++||||||||+.
T Consensus         3 ~~~~~IgvFDSGVGGLsVlrei~~~LP~e~~iY~~D~a~~PYG~ks~e~I~~~~~~i~~~l~~~~-ik~lVIACNTASa~   81 (269)
T COG0796           3 EPQPPIGVFDSGVGGLSVLREIRRQLPDEDIIYVGDTARFPYGEKSEEEIRERTLEIVDFLLERG-IKALVIACNTASAV   81 (269)
T ss_pred             CCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCC-CCEEEEECCHHHHH
T ss_conf             66681899978987089999999978998689981477899998999999999999999999729-98899966517899


Q ss_pred             HHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEECHHHHCCHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCC
Q ss_conf             38999862577765445479999998407883299850677317016899851278857977056422578776642677
Q gi|254780905|r   91 IKDELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYACGIK  170 (271)
Q Consensus        91 ~~~~l~~~~~~ipiigii~~~~~a~~~~~~~~VgiLAT~~Ti~s~~y~~~i~~~~~~~~v~~~~~~~lv~~iE~~~~~~~  170 (271)
                      +++.||++| ++||+|++|++|+|+..+++++||||||++|++|.+|++++++++++++|..++||.||+++|+++.+..
T Consensus        82 al~~LR~~~-~iPVvGviPaik~A~~~t~~~~IgViaT~~Tvks~~y~~~i~~~~~~~~V~~la~p~lV~lvE~g~~~~~  160 (269)
T COG0796          82 ALEDLREKF-DIPVVGVIPAIKPAVALTRNGRIGVIATPATVKSNAYRDLIARFAPDCEVESLACPELVPLVEEGIRGGP  160 (269)
T ss_pred             HHHHHHHHC-CCCEEEECCCHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCH
T ss_conf             999999867-9998995315499997313875899955112401899999998589987997038401888845642578


Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHCCCCCCCCCC--CE
Q ss_conf             6979999999998465410588789980563588999999864899789828589999999998642733457788--77
Q gi|254780905|r  171 IKEDEIKKEIEGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSPWPVDWLDNSDSIARRARCLLPRINTHQTRVFD--DH  248 (271)
Q Consensus       171 ~~~~~~~~~l~~~l~~~~~~~~D~iILGCTHyPll~~~i~~~~~~~v~iIDpa~~va~~~~~~L~~~~~~~~~~~~--~~  248 (271)
                          ..++.++.++.++...++|++||||||||||++.|++++|+++++|||++++|+++.++|...++......+  .+
T Consensus       161 ----~~~~~l~~~l~~~~~~~~DtlVLGCTHyPll~~~i~~~~~~~v~lids~~~~a~~~~~~L~~~~~~~~~~~~~~~~  236 (269)
T COG0796         161 ----VALEVLKEYLPPLQEAGPDTLVLGCTHYPLLKPEIQQVLGEHVALIDSGAETARRLARLLSPEGLLAKGADGGPDH  236 (269)
T ss_pred             ----HHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHCHHHHCCCCCCCCCCE
T ss_conf             ----8999999984004306998899917480878999999827895687789999999999707232035555788655


Q ss_pred             EEEECCCHHHHHHHHHHHCCCC
Q ss_conf             9996699799999999856888
Q gi|254780905|r  249 ALFLSGKPDIAMRRLMQGFGLK  270 (271)
Q Consensus       249 ~f~~T~~~~~~~~~~~~~~G~~  270 (271)
                      .||+||+++.|.+.+.+|||..
T Consensus       237 ~f~~tg~~~~~~~~~~~~l~~~  258 (269)
T COG0796         237 RFFTTGDPDEFEQLLKRWLGLG  258 (269)
T ss_pred             EEEECCCCHHHHHHHHHHHCCC
T ss_conf             9997699589999999985457


No 3  
>TIGR00067 glut_race glutamate racemase; InterPro: IPR004391 Glutamate racemase (5.1.1.3 from EC) provides the (R)-glutamic acid required for cell wall biosynthesis. It converts L-glutamate to D-glutamate during peptidoglycan biosynthesis. The most closely related proteins differing in function are aspartate racemases.; GO: 0008881 glutamate racemase activity, 0009252 peptidoglycan biosynthetic process.
Probab=100.00  E-value=0  Score=509.57  Aligned_cols=251  Identities=25%  Similarity=0.399  Sum_probs=235.3

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHH
Q ss_conf             87079877910589999999968999899994157898989898999999999999986216984899717620263389
Q gi|254780905|r   14 NSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIKD   93 (271)
Q Consensus        14 ~~IgifDSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~~   93 (271)
                      +.|||||||||||||+++|++.+|.++|||+|||+|+|||+||++.|.+++.++++|+.+.+..+++||||||||+.+++
T Consensus         1 PtIgvFDSGvGGLsV~~ei~~~lp~~~yiY~~D~~~~PYG~ks~~~i~e~v~~~~~~l~e~~~ik~lv~ACNTasa~ale   80 (262)
T TIGR00067         1 PTIGVFDSGVGGLSVLKEILKQLPKEEYIYVGDTARVPYGEKSPEKILEYVLELLEFLKESYNIKLLVVACNTASAIALE   80 (262)
T ss_pred             CEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHH
T ss_conf             93789876863578999999857897368861423496688855789999999999973414641556511156698899


Q ss_pred             HHHHHCCCCCCCCCC-HHHHHHHHHCCC--CCEEEEECHHHHCCHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCC
Q ss_conf             998625777654454-799999984078--83299850677317016899851278857977056422578776642677
Q gi|254780905|r   94 ELRSTFPSMAFLGAV-PAIKQAAAYTQS--GLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYACGIK  170 (271)
Q Consensus        94 ~l~~~~~~ipiigii-~~~~~a~~~~~~--~~VgiLAT~~Ti~s~~y~~~i~~~~~~~~v~~~~~~~lv~~iE~~~~~~~  170 (271)
                      .||++| ++||+|+| |++++|.....+  ++|||+||++|++|.+|++++++.++++.|...+||+||++||++..   
T Consensus        81 ~lq~~f-~~PvvGVi~P~~~aa~~~~~~~~~~vlviaT~~T~~s~~~~~~~~~~~~d~~V~~LA~p~lV~l~E~~~~---  156 (262)
T TIGR00067        81 DLQRNF-DFPVVGVIEPAVKAAIRLVKNKRKRVLVIATNATIKSNAYHEAVKEIANDLLVEQLACPELVPLVEEGEF---  156 (262)
T ss_pred             HHHHHC-CCCEEEEECCCHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHCC---
T ss_conf             998772-8987897666516888743401770588504467888899999986085023764157630377740024---


Q ss_pred             CCHHHHHHHHHHHHHHHH--CCCCCEEEECCCCHHHHHHHHHHHCCCCCEEEEC--HHHHHHHHHHHHHHCCCCCCCCC-
Q ss_conf             697999999999846541--0588789980563588999999864899789828--58999999999864273345778-
Q gi|254780905|r  171 IKEDEIKKEIEGCFIEKE--GKRTDVIVLACTHYPLIVHVFRQLSPWPVDWLDN--SDSIARRARCLLPRINTHQTRVF-  245 (271)
Q Consensus       171 ~~~~~~~~~l~~~l~~~~--~~~~D~iILGCTHyPll~~~i~~~~~~~v~iIDp--a~~va~~~~~~L~~~~~~~~~~~-  245 (271)
                       .++...+.++.+|.++.  +.++|+|||||||||+|++.|+++|+.++.++||  +..+|+++.++|+..+.+..+.. 
T Consensus       157 -~~~~~~~~lk~~l~pl~~l~~~~d~vvLGCTHfp~L~~~i~~~l~~~v~l~~~PL~~~~~~~~~~~L~~~~~l~ks~~a  235 (262)
T TIGR00067       157 -EEDYALECLKAYLSPLLRLDTQIDTVVLGCTHFPLLKEEIEQYLGEHVRLVSSPLGVHTAKRLKKLLEHKGALKKSAIA  235 (262)
T ss_pred             -CHHHHHHHHHHHCCCHHHHCCCCCEEEECCCCHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             -4158999999860526774289987997874347789999987178713227416789999999999872544478876


Q ss_pred             -CCEEEEECCCH--HHHHHHHHHHCCC
Q ss_conf             -87799966997--9999999985688
Q gi|254780905|r  246 -DDHALFLSGKP--DIAMRRLMQGFGL  269 (271)
Q Consensus       246 -~~~~f~~T~~~--~~~~~~~~~~~G~  269 (271)
                       .+++|++||++  ..+.+...+|++.
T Consensus       236 F~~~~F~~sg~~nl~~~~~~~~~~~~~  262 (262)
T TIGR00067       236 FPDIEFLLSGTKNLTQFQELAKKWLGL  262 (262)
T ss_pred             CHHHHHHCCCCHHHHHHHHHHHHHHCC
T ss_conf             212254405872368898888986059


No 4  
>pfam01177 Asp_Glu_race Asp/Glu/Hydantoin racemase. This family contains aspartate racemase, glutamate racemase, hydantoin racemase and arylmalonate decarboxylase.
Probab=99.97  E-value=9.1e-29  Score=211.61  Aligned_cols=205  Identities=22%  Similarity=0.247  Sum_probs=160.6

Q ss_pred             EEEEECCCCHHHHHHHHHHHCCCC--CEEEEECCCCCCCCCCC---HHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHH
Q ss_conf             079877910589999999968999--89999415789898989---8999999999999986216984899717620263
Q gi|254780905|r   16 ILIFDSGIGGLIVLQKMRFLMPEY--HFIYVADDVGFPYGNWE---DHALKKRLMFLFSDILDKYQPVLSVIACNTAFTL   90 (271)
Q Consensus        16 IgifDSGiGGLtv~~~l~~~lP~~--~~iY~~D~~~~PYG~ks---~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~   90 (271)
                      ||++ |+.+++++.+++.+.+|.+  +.+|+.|+...|+....   .+.......+.+.+| ++.++|+|++||||+|..
T Consensus         1 IG~i-~p~~~~~~~~~~~~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l-~~~g~d~iviaCnt~~~~   78 (212)
T pfam01177         1 IGLI-SPNSTLTVTRELVRALPAEVGPGVYLHDTRIPPRTEEILDGAESPLERLLEAARRL-AKAGADAIVIACNTAHAL   78 (212)
T ss_pred             CCEE-ECCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHH-HHCCCCEEEEECCHHHHH
T ss_conf             9357-63528999999999655467982999679999876677654542799999999999-867999999917659999


Q ss_pred             HHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEECHHHHCCHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCC
Q ss_conf             38999862577765445479999998407883299850677317016899851278857977056422578776642677
Q gi|254780905|r   91 IKDELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYACGIK  170 (271)
Q Consensus        91 ~~~~l~~~~~~ipiigii~~~~~a~~~~~~~~VgiLAT~~Ti~s~~y~~~i~~~~~~~~v~~~~~~~lv~~iE~~~~~~~  170 (271)
                      . +.+++.. ++|++|+++++..++.....++|||+||.+|+.++.|++.+++.+.+.. ....++.+++.+|.+.    
T Consensus        79 ~-~~~~~~~-~ipvi~~~~a~~~a~~~~~~~ri~vl~t~~t~~~~~~~~~l~~~g~~~~-~~~~~~~~~~~~~~~~----  151 (212)
T pfam01177        79 A-GELREAT-DIPVIGIVEAALKALALLGAKRVGVLATYGTIVSGLYQELLAEAGIEVV-APAIRLGIVEVLELGR----  151 (212)
T ss_pred             H-HHHHHHC-CCCEEEHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEE-ECCCCCCCHHHHHHCC----
T ss_conf             9-9999872-9989854789999999718980899956424437999999997599278-5243553255999289----


Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHCCC-CCEEEECHHHHHHHH
Q ss_conf             697999999999846541058878998056358899999986489-978982858999999
Q gi|254780905|r  171 IKEDEIKKEIEGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSPW-PVDWLDNSDSIARRA  230 (271)
Q Consensus       171 ~~~~~~~~~l~~~l~~~~~~~~D~iILGCTHyPll~~~i~~~~~~-~v~iIDpa~~va~~~  230 (271)
                      ...+. ...+...+..+..+++|++||||||||++.+.++++.+. ++++|||++++++++
T Consensus       152 ~~~~~-~~~~~~~~~~~~~~~~d~ivLgCT~l~~~~~~~~~l~~~~gvpvids~~a~~~~~  211 (212)
T pfam01177       152 IEEAS-VEALAAALERLAEDGADAVILGCTELPLLLELIEALEPELGVPVIDSNQALAWAL  211 (212)
T ss_pred             CCHHH-HHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCCCCEECHHHHHHHHH
T ss_conf             99999-9999999988752898999985888287999999986503991982399999985


No 5  
>PRK10200 putative racemase; Provisional
Probab=99.94  E-value=5.8e-26  Score=192.97  Aligned_cols=206  Identities=16%  Similarity=0.190  Sum_probs=138.1

Q ss_pred             CCEEEEECCCCHHH---HHHHHHHHCCC----CCE-EEEECCCCCC----C---CCCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             87079877910589---99999996899----989-9994157898----9---89898999999999999986216984
Q gi|254780905|r   14 NSILIFDSGIGGLI---VLQKMRFLMPE----YHF-IYVADDVGFP----Y---GNWEDHALKKRLMFLFSDILDKYQPV   78 (271)
Q Consensus        14 ~~IgifDSGiGGLt---v~~~l~~~lP~----~~~-iY~~D~~~~P----Y---G~ks~~~I~~~~~~~~~~ll~k~~~~   78 (271)
                      +.|||. .|||-.+   .++.+.+..|.    .+. ..+=++-.+|    +   |++  +.......+... .+++.|++
T Consensus         2 k~IGIl-GGmGp~AT~~yy~~i~~~t~a~~~~~h~~~l~~~s~~~~~~~~~~~~~~~--d~~~~~L~~~a~-~Le~aGAd   77 (230)
T PRK10200          2 KTIGLL-GGMSWESTIPYYRLINEGIKQRLGGLHSAQLLLHSVDFHEIEECQRRGEW--DKTGDILAEAAL-GLQRAGAE   77 (230)
T ss_pred             CEEEEC-CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCHHHHHHHHHCCCC--CHHHHHHHHHHH-HHHHCCCC
T ss_conf             678982-66798999999999999998871897887211227885779998867996--539999999999-99984999


Q ss_pred             EEEEECCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEECHHHHCCHHHHHHHHH-CCCCCEEEECCCCC
Q ss_conf             89971762026338999862577765445479999998407883299850677317016899851-27885797705642
Q gi|254780905|r   79 LSVIACNTAFTLIKDELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPATLRRTYTSNLIHS-YVSQCHIHLVSSMI  157 (271)
Q Consensus        79 ~IVIACNTasa~~~~~l~~~~~~ipiigii~~~~~a~~~~~~~~VgiLAT~~Ti~s~~y~~~i~~-~~~~~~v~~~~~~~  157 (271)
                      +|+|+||||| .+.+.+++.. ++|+++|++++..++.....++||+|||.+|+++++|++.+.+ ++-++.+   |...
T Consensus        78 ~i~i~cNTaH-~~~d~i~~~~-~iP~l~i~~~t~~~i~~~g~~~VglLgT~~Tm~~~~Y~~~l~~~~gi~~v~---P~~~  152 (230)
T PRK10200         78 GIVLCTNTMH-KVADAIESRC-SLPFLHIADATGRAIAGAGMTRVALLGTRYTMEQDFYRGRLTEQFSINCLI---PEAD  152 (230)
T ss_pred             EEEECCCHHH-HHHHHHHHHC-CCCEEEHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCEEEC---CCHH
T ss_conf             9996474789-9999999756-998731899999999975998589851456666168899999857985867---9999


Q ss_pred             HHHHHHHH----HHCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHH
Q ss_conf             25787766----42677697999999999846541058878998056358899999986489978982858999999999
Q gi|254780905|r  158 LASRVEEY----ACGIKIKEDEIKKEIEGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSPWPVDWLDNSDSIARRARCL  233 (271)
Q Consensus       158 lv~~iE~~----~~~~~~~~~~~~~~l~~~l~~~~~~~~D~iILGCTHyPll~~~i~~~~~~~v~iIDpa~~va~~~~~~  233 (271)
                      ....+.+.    ...+.. .+..+..+......+.++++|.+|||||++|++.+..    ..+++++||.+..|+++.+.
T Consensus       153 ~q~~v~~~I~~~l~~g~~-~~~~r~~~~~~~~~L~~~Ga~~vIlgCTElplll~~~----~~~~p~~Dst~i~a~a~V~~  227 (230)
T PRK10200        153 ERAKINQIIFEELCLGQF-TEASRAYYAQVIARLAEQGAQGVIFGCTEIGLLVPEE----RSVLPVFDTAAIHAEDAVAF  227 (230)
T ss_pred             HHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHCCCC----CCCCCEECCHHHHHHHHHHH
T ss_conf             999999999999981888-7788999999999999789999999057788824865----79998646399999999999


No 6  
>COG1794 RacX Aspartate racemase [Cell envelope biogenesis, outer membrane]
Probab=99.90  E-value=6.8e-23  Score=172.55  Aligned_cols=203  Identities=18%  Similarity=0.237  Sum_probs=140.9

Q ss_pred             CCEEEEECCCCHHH---HHHHHHHHC----CC----CCEEEEECCCCCC-------CCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf             87079877910589---999999968----99----9899994157898-------989898999999999999986216
Q gi|254780905|r   14 NSILIFDSGIGGLI---VLQKMRFLM----PE----YHFIYVADDVGFP-------YGNWEDHALKKRLMFLFSDILDKY   75 (271)
Q Consensus        14 ~~IgifDSGiGGLt---v~~~l~~~l----P~----~~~iY~~D~~~~P-------YG~ks~~~I~~~~~~~~~~ll~k~   75 (271)
                      +.|||. .|||-.|   .++.+.+..    -.    +-++|   +..||       =|+++.  -.++..... +-+++.
T Consensus         2 k~iGil-GGMgpeST~~yyr~ine~~~~~~g~~h~~~i~~~---s~~f~~~~~~q~~~~w~~--~~~~L~~~a-~~Le~~   74 (230)
T COG1794           2 KTIGIL-GGMGPESTAPYYRKINEAVRAKLGGLHSAELLLY---SVDFPEIETLQRAGEWDE--AGEILIDAA-KKLERA   74 (230)
T ss_pred             CEEEEC-CCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHEE---CCCCCCHHHHHCCCCCCC--HHHHHHHHH-HHHHHC
T ss_conf             626760-6788788999999999999998378676233122---688655999873676565--899999999-999965


Q ss_pred             CCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEECHHHHCCHHHHHHHHHCCCCCEEEECCC
Q ss_conf             98489971762026338999862577765445479999998407883299850677317016899851278857977056
Q gi|254780905|r   76 QPVLSVIACNTAFTLIKDELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSS  155 (271)
Q Consensus        76 ~~~~IVIACNTasa~~~~~l~~~~~~ipiigii~~~~~a~~~~~~~~VgiLAT~~Ti~s~~y~~~i~~~~~~~~v~~~~~  155 (271)
                      |+++|+++|||+|..+ |.+++.. ++|+++|++++..+++...-++||+|||.+||.+++|++.+...+-++-   +|.
T Consensus        75 GAd~i~l~~NT~H~~~-d~iq~~~-~iPllhIidaTa~~ik~~g~kkvgLLgT~~Tm~~~fY~~~l~~~gievv---vPd  149 (230)
T COG1794          75 GADFIVLPTNTMHKVA-DDIQKAV-GIPLLHIIDATAKAIKAAGAKKVGLLGTRFTMEQGFYRKRLEEKGIEVV---VPD  149 (230)
T ss_pred             CCCEEEEECCCHHHHH-HHHHHHC-CCCEEHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEE---CCC
T ss_conf             9998997077378999-9999854-9973307899999987658861588613005776899999997796475---677


Q ss_pred             CCHHHHHHHHHHC----CCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHCCCCCEEEECHHHHHHHHH
Q ss_conf             4225787766426----776979999999998465410588789980563588999999864899789828589999999
Q gi|254780905|r  156 MILASRVEEYACG----IKIKEDEIKKEIEGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSPWPVDWLDNSDSIARRAR  231 (271)
Q Consensus       156 ~~lv~~iE~~~~~----~~~~~~~~~~~l~~~l~~~~~~~~D~iILGCTHyPll~~~i~~~~~~~v~iIDpa~~va~~~~  231 (271)
                      ......|.+.++.    +. ..+.-+..+...+..+..+|+|.+|||||+.|++.+.-.    .+++++|+....|+.+.
T Consensus       150 d~~q~~v~~iIy~El~~G~-~~~~sr~~~~~ii~~l~~~Gae~vIlGCTEi~lll~~~d----~~vP~~Dtt~iha~aav  224 (230)
T COG1794         150 DDEQAEVNRIIYEELCQGI-VKDASRELYLAVIERLAERGAEGVILGCTEIPLLLSQDD----SSVPVFDTTAIHAEAAV  224 (230)
T ss_pred             HHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHEEECCCC----CCCCCCCCHHHHHHHHH
T ss_conf             7889999999999995441-027789999999999997699889994331104564666----76763150999999999


Q ss_pred             HH
Q ss_conf             99
Q gi|254780905|r  232 CL  233 (271)
Q Consensus       232 ~~  233 (271)
                      +.
T Consensus       225 ~~  226 (230)
T COG1794         225 EL  226 (230)
T ss_pred             HH
T ss_conf             99


No 7  
>TIGR00035 asp_race aspartate racemase; InterPro: IPR004380 Asparate racemases (5.1.1.13 from EC) and some close homologs of function are related to the more common glutamate racemases, but form a distinct evolutionary branch. Members of this family are the aspartate racemase-related subset of amino acid racemases. Aspartate racemases act as homodimers and catalyse the conversion of L-aspartate to D-aspartate.; GO: 0016855 racemase and epimerase activity acting on amino acids and derivatives, 0006520 amino acid metabolic process.
Probab=99.62  E-value=1.7e-14  Score=116.75  Aligned_cols=213  Identities=15%  Similarity=0.149  Sum_probs=143.1

Q ss_pred             CCCEEEEECCCCHHHH---HHHHHHHCCC------CCEEEEECCCCCCC----C-CCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             8870798779105899---9999996899------98999941578989----8-9898999999999999986216984
Q gi|254780905|r   13 QNSILIFDSGIGGLIV---LQKMRFLMPE------YHFIYVADDVGFPY----G-NWEDHALKKRLMFLFSDILDKYQPV   78 (271)
Q Consensus        13 ~~~IgifDSGiGGLtv---~~~l~~~lP~------~~~iY~~D~~~~PY----G-~ks~~~I~~~~~~~~~~ll~k~~~~   78 (271)
                      .+.||+. .|+|-++.   ++.+....|.      ..++. -.+.++|-    - .++.+...........++ +..+++
T Consensus         2 ~~~~g~~-gg~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~p~p~l~~~~~~~-~~~g~~   78 (241)
T TIGR00035         2 ENFIGIL-GGMGPLATAELFRLINEKTPAKRDQEHPAEVL-FNNPNIPDRTAYILGRGEDNPGPFLLDDAEKL-ELLGAD   78 (241)
T ss_pred             CCCHHHH-CCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEE-EECCCCCHHHHHHHCCCCCCCHHHHHHHHHHH-HHCCCC
T ss_conf             5201110-36643578999999876301112543221224-30576521344331355223035778888888-741887


Q ss_pred             EEEEECCCCCHHHHHHHHHHCCCCCCCCCCHHHH-HHHHHCCCCCEEEEECHHHHCCHHHHHHHHHCCCCCEEEECCC-C
Q ss_conf             8997176202633899986257776544547999-9998407883299850677317016899851278857977056-4
Q gi|254780905|r   79 LSVIACNTAFTLIKDELRSTFPSMAFLGAVPAIK-QAAAYTQSGLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSS-M  156 (271)
Q Consensus        79 ~IVIACNTasa~~~~~l~~~~~~ipiigii~~~~-~a~~~~~~~~VgiLAT~~Ti~s~~y~~~i~~~~~~~~v~~~~~-~  156 (271)
                      +++++|||+|..+ +.++... .+|++++++... ..+.....+++|+|||.+|+++++|++.+.+++....+..... .
T Consensus        79 ~~~~~~n~~h~~~-~~~~~~~-~~p~~~~~~~~~~~~~~~~g~~~~g~l~~~g~~~~g~y~~~~~~~g~~~~~p~~~~d~  156 (241)
T TIGR00035        79 FILLPCNTAHYFA-EDLQKAI-GIPLLSMIEETANELVKEDGLKKAGLLGTEGTIKDGVYERELKKLGIEIVTPDKEEDQ  156 (241)
T ss_pred             EEEEECCHHHHHH-HHHHHHH-CCCCEEHHHHHHHHHHHHCCCCHHHEECCCCHHHHHHHHHHHHHCCCEEECCCCCHHH
T ss_conf             5886153267889-9988875-4861000246666666530321010000210133446677786547325415640147


Q ss_pred             CHH-HHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC-CCEEEECCCCHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHH
Q ss_conf             225-78776642677697999999999846541058-8789980563588999999864899789828589999999998
Q gi|254780905|r  157 ILA-SRVEEYACGIKIKEDEIKKEIEGCFIEKEGKR-TDVIVLACTHYPLIVHVFRQLSPWPVDWLDNSDSIARRARCLL  234 (271)
Q Consensus       157 ~lv-~~iE~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~D~iILGCTHyPll~~~i~~~~~~~v~iIDpa~~va~~~~~~L  234 (271)
                      ..+ ..+..+...+.+ ...-+..+...+..+..++ ++.+|+|||+.|++...-.+   .+..++||.+.+|....+++
T Consensus       157 ~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~gc~e~~~~~~~~~d---~~~p~~~~~~~~~~~~~~~~  232 (241)
T TIGR00035       157 EAINSGIYDGLKAGNL-RELGRELLLKIAKELEERGNAEGIILGCTELSLVLKFPDD---LDVPLIDPTDLLAEAAVKLA  232 (241)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHCCCC---CCCCCCCHHHHHHHHHHHHH
T ss_conf             8888888766655667-7755899999999998603745144321023454430001---35533242567888899988


No 8  
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=98.97  E-value=2.9e-07  Score=68.61  Aligned_cols=150  Identities=19%  Similarity=0.160  Sum_probs=102.4

Q ss_pred             HCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEECHHHHCCH-HHHHHHHHCCCCCEEE
Q ss_conf             216984899717620263389998625777654454799999984078832998506773170-1689985127885797
Q gi|254780905|r   73 DKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPATLRRT-YTSNLIHSYVSQCHIH  151 (271)
Q Consensus        73 ~k~~~~~IVIACNTasa~~~~~l~~~~~~ipiigii~~~~~a~~~~~~~~VgiLAT~~Ti~s~-~y~~~i~~~~~~~~v~  151 (271)
                      +..|++.|+|||-.-  -.++.+|+.+ .+|++|+-++....+. .-.+|++|+-|  |-++. ...+.+++++-.-...
T Consensus        66 ~~~GvdaiiIaCf~D--Pgl~~~Re~~-~~PviGi~eAsv~~A~-~vgrrfsViTt--t~rs~~il~~lv~~~g~s~~~~  139 (230)
T COG4126          66 EEQGVDAIIIACFSD--PGLAAARERA-AIPVIGICEASVLAAL-FVGRRFSVITT--TERSRPILEELVRSYGLSRHCR  139 (230)
T ss_pred             CCCCCCEEEEEECCC--HHHHHHHHHH-CCCCEEHHHHHHHHHH-HHCCEEEEEEC--CCCCHHHHHHHHHHCCCCCCCC
T ss_conf             524776899870587--6899999982-7982542499999998-74566788854--8531778999998637323455


Q ss_pred             ECCCCCHHHHHHHHHHCCCCCHHHHHHHH-HHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHCCCCCEEEECHHHHHHHH
Q ss_conf             70564225787766426776979999999-99846541058878998056358899999986489978982858999999
Q gi|254780905|r  152 LVSSMILASRVEEYACGIKIKEDEIKKEI-EGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSPWPVDWLDNSDSIARRA  230 (271)
Q Consensus       152 ~~~~~~lv~~iE~~~~~~~~~~~~~~~~l-~~~l~~~~~~~~D~iILGCTHyPll~~~i~~~~~~~v~iIDpa~~va~~~  230 (271)
                      ...+..+..+--++      ..++.+..+ ..+...++..++|+|||||+-+.-+.+.+++.++  |++||+-.+-.+.+
T Consensus       140 ~vrstdl~vL~l~~------~~~~~~~~l~~~~~~a~~edgAeaIiLGCAGms~la~~Lq~~~g--vPVIDgv~Aav~~a  211 (230)
T COG4126         140 SVRSTDLPVLALEG------PPEEAEALLVIEAAEALKEDGAEAIILGCAGMSDLADQLQKAFG--VPVIDGVAAAVKLA  211 (230)
T ss_pred             CEEECCCCCCCCCC------CHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHC--CCCCCCHHHHHHHH
T ss_conf             32337987010369------76789999999999986532888899858217779999999719--98466568899999


Q ss_pred             HHHHHH
Q ss_conf             999864
Q gi|254780905|r  231 RCLLPR  236 (271)
Q Consensus       231 ~~~L~~  236 (271)
                      ..++..
T Consensus       212 ~~L~~~  217 (230)
T COG4126         212 EGLLGM  217 (230)
T ss_pred             HHHHHH
T ss_conf             999861


No 9  
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.22  E-value=0.00028  Score=48.80  Aligned_cols=192  Identities=13%  Similarity=0.067  Sum_probs=128.6

Q ss_pred             HHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHH---HHHHHHHHHHHCCCCCEEEEECCCCCHHHH--------HHHH
Q ss_conf             99999996899989999415789898989899999---999999998621698489971762026338--------9998
Q gi|254780905|r   28 VLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKK---RLMFLFSDILDKYQPVLSVIACNTAFTLIK--------DELR   96 (271)
Q Consensus        28 v~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~---~~~~~~~~ll~k~~~~~IVIACNTasa~~~--------~~l~   96 (271)
                      +=-++.+.+|.+.+-..  +.|+||-+-++|++.+   ++..... .+.-.+++.|+-+|-|+|...-        ..++
T Consensus        19 mE~ef~~m~~~ervs~H--~sRmpl~~VT~EeL~~M~~~t~~aAl-~Lada~vdvI~Y~CtsgS~i~G~~~d~ei~~~ie   95 (238)
T COG3473          19 MEPEFWRMLPSERVSVH--TSRMPLKNVTPEELLKMESYTERAAL-ELADAGVDVIVYGCTSGSLIGGPGYDKEIAQRIE   95 (238)
T ss_pred             CCHHHHHHHHHCCCEEE--ECCCCCCCCCHHHHHHHHHHHHHHHH-HCCCCCCCEEEEECCCEEEECCCCHHHHHHHHHH
T ss_conf             44578874123162133--32421022999999988888899998-6375666789996262016427745599999998


Q ss_pred             HHCCCCCCCCCCHHHHHHHHHCCCCCEEEEECHHHHCCHHH-HHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCCHHH
Q ss_conf             62577765445479999998407883299850677317016-89985127885797705642257877664267769799
Q gi|254780905|r   97 STFPSMAFLGAVPAIKQAAAYTQSGLISILSTPATLRRTYT-SNLIHSYVSQCHIHLVSSMILASRVEEYACGIKIKEDE  175 (271)
Q Consensus        97 ~~~~~ipiigii~~~~~a~~~~~~~~VgiLAT~~Ti~s~~y-~~~i~~~~~~~~v~~~~~~~lv~~iE~~~~~~~~~~~~  175 (271)
                      +.- ++|++..--++..+.+....++|. +.||.+..-..- .+.++.  .+.+|....|-.+.+..|-+..    ...+
T Consensus        96 ~~~-~v~vvTts~Avv~aL~al~a~ri~-vlTPY~~evn~~e~ef~~~--~Gfeiv~~~~Lgi~dn~eigr~----~P~~  167 (238)
T COG3473          96 EAK-GVPVVTTSTAVVEALNALGAQRIS-VLTPYIDEVNQREIEFLEA--NGFEIVDFKGLGITDNLEIGRQ----EPWA  167 (238)
T ss_pred             HCC-CCCEEECHHHHHHHHHHHCCCEEE-EECCCHHHHHHHHHHHHHH--CCEEEEEEECCCCCCCCHHCCC----CHHH
T ss_conf             626-985561408999999861751589-8525305441589999984--8927997541577665001146----8389


Q ss_pred             HHHHHHHHHHHHHCCCCCEEEECCCCHHH--HHHHHHHHCCCCCEEEECHHHHHHHHHHHHHH
Q ss_conf             99999998465410588789980563588--99999986489978982858999999999864
Q gi|254780905|r  176 IKKEIEGCFIEKEGKRTDVIVLACTHYPL--IVHVFRQLSPWPVDWLDNSDSIARRARCLLPR  236 (271)
Q Consensus       176 ~~~~l~~~l~~~~~~~~D~iILGCTHyPl--l~~~i~~~~~~~v~iIDpa~~va~~~~~~L~~  236 (271)
                      +-    +........++|++...||.++=  +...+++.++  +++|.|+.+++=.+.+.+.-
T Consensus       168 ~y----~lAk~~~~~~~DaiFiSCTnlRt~eii~~lE~~~G--~PVvsSN~AT~W~~Lr~~g~  224 (238)
T COG3473         168 VY----RLAKEVFTPDADAIFISCTNLRTFEIIEKLERDTG--VPVVSSNQATLWMALRLIGL  224 (238)
T ss_pred             HH----HHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHC--CCEEECCHHHHHHHHHHCCC
T ss_conf             99----99998567777769997004531788999999749--96361458899999997187


No 10 
>PRK07475 hypothetical protein; Provisional
Probab=98.01  E-value=0.00074  Score=45.99  Aligned_cols=156  Identities=15%  Similarity=0.150  Sum_probs=100.1

Q ss_pred             CHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCC----CHHHHHHHHHCCCCCEEEEECHHH
Q ss_conf             9899999999999998621698489971762026338999862577765445----479999998407883299850677
Q gi|254780905|r   56 EDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGA----VPAIKQAAAYTQSGLISILSTPAT  131 (271)
Q Consensus        56 s~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~~~~~ipiigi----i~~~~~a~~~~~~~~VgiLAT~~T  131 (271)
                      .++++.+...+..+.| ++.||+.|.-.|-=.+ .+-++|.+.. ++|++.-    +|.+..  .....++||||.-.+.
T Consensus        60 ~~~~~l~~fi~Aa~~L-~~~G~~aIttsCGFLa-~~Q~eLa~a~-~vPV~tSSLlQvP~v~~--~l~~~~~vGIlT~~a~  134 (243)
T PRK07475         60 DPAALLDAFIAAAQEL-VAEGVRAITTSCGFLA-LFQKELAAAV-GVPVATSSLLQVPLIQA--LLPPGQRVGILTASAA  134 (243)
T ss_pred             CCHHHHHHHHHHHHHH-HHCCCCEEEECCCCHH-HHHHHHHHHH-CCCHHHHHHHHHHHHHH--HCCCCCEEEEEEECHH
T ss_conf             9288999999999999-9759889986550329-8999999971-99614526877999998--7089985799996146


Q ss_pred             HCCHHHHHHHHHCC--CCCEEEE-CCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH--CCCCCEEEECCCCHHHHH
Q ss_conf             31701689985127--8857977-056422578776642677697999999999846541--058878998056358899
Q gi|254780905|r  132 LRRTYTSNLIHSYV--SQCHIHL-VSSMILASRVEEYACGIKIKEDEIKKEIEGCFIEKE--GKRTDVIVLACTHYPLIV  206 (271)
Q Consensus       132 i~s~~y~~~i~~~~--~~~~v~~-~~~~~lv~~iE~~~~~~~~~~~~~~~~l~~~l~~~~--~~~~D~iILGCTHyPll~  206 (271)
                      .   .-...+...+  .+..|.. .....|...+.++..  ..+.+.+++.+-.....+.  ..++.+++|=||-.|=.+
T Consensus       135 ~---Lt~~Hl~a~g~~~~~~I~Gl~~~~~f~~~il~~~~--~lD~~~~~~el~~~a~~l~~~~p~igAIvLECTNlpPYa  209 (243)
T PRK07475        135 S---LTPAHLAAVGVPPDLPIVGLEEDGEFFRNILEGRG--ELDFEALEQDVLAAARALLARHPDIGAIVLECTNMPPYA  209 (243)
T ss_pred             H---CCHHHHHHCCCCCCCCEEECCCCCHHHHHHHCCCC--CCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHH
T ss_conf             5---79998844699999756518988428999978874--459999999999999999985999777999888998469


Q ss_pred             HHHHHHCCCCCEEEECH
Q ss_conf             99998648997898285
Q gi|254780905|r  207 HVFRQLSPWPVDWLDNS  223 (271)
Q Consensus       207 ~~i~~~~~~~v~iIDpa  223 (271)
                      ..+++.++  +++.|=-
T Consensus       210 ~ai~~~~g--lPVfDi~  224 (243)
T PRK07475        210 AAIRRATG--LPVFDIV  224 (243)
T ss_pred             HHHHHHHC--CCEEEHH
T ss_conf             99999879--9877699


No 11 
>PRK10200 putative racemase; Provisional
Probab=96.00  E-value=0.15  Score=30.58  Aligned_cols=135  Identities=13%  Similarity=0.060  Sum_probs=77.7

Q ss_pred             CCEEEEECHHHHCC-HHHHHHHHH----CCCCC-EEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf             83299850677317-016899851----27885-7977056422578776642677697999999999846541058878
Q gi|254780905|r  121 GLISILSTPATLRR-TYTSNLIHS----YVSQC-HIHLVSSMILASRVEEYACGIKIKEDEIKKEIEGCFIEKEGKRTDV  194 (271)
Q Consensus       121 ~~VgiLAT~~Ti~s-~~y~~~i~~----~~~~~-~v~~~~~~~lv~~iE~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~  194 (271)
                      |+|||||--+...+ .||++..+.    .+.+. .......+.+.+...... ..  ..+.....+......+...|+|.
T Consensus         2 k~IGIlGGmGp~AT~~yy~~i~~~t~a~~~~~h~~~l~~~s~~~~~~~~~~~-~~--~~d~~~~~L~~~a~~Le~aGAd~   78 (230)
T PRK10200          2 KTIGLLGGMSWESTIPYYRLINEGIKQRLGGLHSAQLLLHSVDFHEIEECQR-RG--EWDKTGDILAEAALGLQRAGAEG   78 (230)
T ss_pred             CEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCHHHHHHHHH-CC--CCCHHHHHHHHHHHHHHHCCCCE
T ss_conf             6789826679899999999999999887189788721122788577999886-79--96539999999999999849999


Q ss_pred             EEECCCCHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCH--HHHH-HHHHHHCCCC
Q ss_conf             99805635889999998648997898285899999999986427334577887799966997--9999-9999856888
Q gi|254780905|r  195 IVLACTHYPLIVHVFRQLSPWPVDWLDNSDSIARRARCLLPRINTHQTRVFDDHALFLSGKP--DIAM-RRLMQGFGLK  270 (271)
Q Consensus       195 iILGCTHyPll~~~i~~~~~~~v~iIDpa~~va~~~~~~L~~~~~~~~~~~~~~~f~~T~~~--~~~~-~~~~~~~G~~  270 (271)
                      +++.|----+..+.+++..  ++++++=.+.+++++++.          ...+.-++-|..+  ..|+ .++...+|++
T Consensus        79 i~i~cNTaH~~~d~i~~~~--~iP~l~i~~~t~~~i~~~----------g~~~VglLgT~~Tm~~~~Y~~~l~~~~gi~  145 (230)
T PRK10200         79 IVLCTNTMHKVADAIESRC--SLPFLHIADATGRAIAGA----------GMTRVALLGTRYTMEQDFYRGRLTEQFSIN  145 (230)
T ss_pred             EEECCCHHHHHHHHHHHHC--CCCEEEHHHHHHHHHHHC----------CCCEEEEECCHHHHHHHHHHHHHHHHCCCE
T ss_conf             9964747899999999756--998731899999999975----------998589851456666168899999857985


No 12 
>TIGR02990 ectoine_eutA ectoine utilization protein EutA; InterPro: IPR014332   Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include include Mesorhizobium loti, Silicibacter pomeroyi and Sinorhizobium meliloti 1021, where it is known to be induced by ectoine. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens. ,.
Probab=95.97  E-value=0.16  Score=30.48  Aligned_cols=182  Identities=21%  Similarity=0.227  Sum_probs=123.9

Q ss_pred             EEEECCCCCCCCCC-CHHHHHHH---HHHHHHHHHHCCCCCEEEEECCCCCHHHHH-----HHHHHCCCCCCCCCCHHHH
Q ss_conf             99941578989898-98999999---999999986216984899717620263389-----9986257776544547999
Q gi|254780905|r   42 IYVADDVGFPYGNW-EDHALKKR---LMFLFSDILDKYQPVLSVIACNTAFTLIKD-----ELRSTFPSMAFLGAVPAIK  112 (271)
Q Consensus        42 iY~~D~~~~PYG~k-s~~~I~~~---~~~~~~~ll~k~~~~~IVIACNTasa~~~~-----~l~~~~~~ipiigii~~~~  112 (271)
                      +|   +.|.||-|= ++|.+++-   ..+.....|=.-..|.|.-.|-+||.+.-+     .+++.-|+.|++.---+..
T Consensus        36 Vy---~~RI~y~NP~~~E~L~~~~P~LT~aAA~ILPdE~lDvv~YsCTsASvV~G~~~v~~~~~AAKP~~pvVTP~~A~~  112 (239)
T TIGR02990        36 VY---VARIPYANPTTPENLRKMQPRLTEAAALILPDEELDVVAYSCTSASVVIGDDEVTRAIKAAKPGTPVVTPSSAAV  112 (239)
T ss_pred             EE---EEECCCCCCCCHHHHHHCCCCHHHHHHHHCCCCCEEEEEEECCCCEEEECHHHHHHHHHHCCCCCCEECCCHHHH
T ss_conf             56---531056677875567531830378887537898353367613421256652899999972389996347876899


Q ss_pred             HHHHHCCCCCEEEEECHHHHC-CHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf             999840788329985067731-7016899851278857977056422578776642677697999999999846541058
Q gi|254780905|r  113 QAAAYTQSGLISILSTPATLR-RTYTSNLIHSYVSQCHIHLVSSMILASRVEEYACGIKIKEDEIKKEIEGCFIEKEGKR  191 (271)
Q Consensus       113 ~a~~~~~~~~VgiLAT~~Ti~-s~~y~~~i~~~~~~~~v~~~~~~~lv~~iE~~~~~~~~~~~~~~~~l~~~l~~~~~~~  191 (271)
                      .+......+||.|| ||.|+. |.---+.+...++  .|....|-.|-+-=|.-    .+....+   + ..-+...++.
T Consensus       113 ~gl~Algv~RiS~L-TPY~~~~~~~MA~YFA~~G~--~i~~~~ClGl~DDREMA----RIs~~~i---v-~~A~~~~d~~  181 (239)
T TIGR02990       113 DGLAALGVRRISLL-TPYTVETSRPMAQYFAVRGF--EIVNFTCLGLTDDREMA----RISPDAI---V-ELAKEAADPD  181 (239)
T ss_pred             HHHHHHCCCEEEEE-CCCCCCCCHHHHHHHHHCCH--HHHHEECCCCCCCHHHH----CCCHHHH---H-HHHHHHCCCC
T ss_conf             99986043204542-48870014478999853180--22100105754452432----3898899---9-9999850611


Q ss_pred             CCEEEECCCCHH--HHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHCCC
Q ss_conf             878998056358--899999986489978982858999999999864273
Q gi|254780905|r  192 TDVIVLACTHYP--LIVHVFRQLSPWPVDWLDNSDSIARRARCLLPRINT  239 (271)
Q Consensus       192 ~D~iILGCTHyP--ll~~~i~~~~~~~v~iIDpa~~va~~~~~~L~~~~~  239 (271)
                      .|+|-+.||=.=  .....+++.+|++  +|-|+++++=++.++.+..+.
T Consensus       182 a~ALF~SCTAlRaA~~~~~iE~~~GkP--VVtSN~A~~W~CLRL~G~~~~  229 (239)
T TIGR02990       182 ADALFLSCTALRAATVVQRIEQAIGKP--VVTSNQATAWRCLRLCGDEDA  229 (239)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHCCCC--EEECCHHHHHHHHHHCCCCCC
T ss_conf             011235589999989999999851898--310246899988874488767


No 13 
>COG1794 RacX Aspartate racemase [Cell envelope biogenesis, outer membrane]
Probab=95.50  E-value=0.12  Score=31.33  Aligned_cols=105  Identities=14%  Similarity=0.089  Sum_probs=68.6

Q ss_pred             CCEEEEECHHHHCC-HHHHHHHHH----C----CCCCEEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf             83299850677317-016899851----2----78857977056422578776642677697999999999846541058
Q gi|254780905|r  121 GLISILSTPATLRR-TYTSNLIHS----Y----VSQCHIHLVSSMILASRVEEYACGIKIKEDEIKKEIEGCFIEKEGKR  191 (271)
Q Consensus       121 ~~VgiLAT~~Ti~s-~~y~~~i~~----~----~~~~~v~~~~~~~lv~~iE~~~~~~~~~~~~~~~~l~~~l~~~~~~~  191 (271)
                      |.||+||--+.-.+ .||++..+.    +    .+.+.++...+++.+.+.-    .+  ..+....+|......+..-|
T Consensus         2 k~iGilGGMgpeST~~yyr~ine~~~~~~g~~h~~~i~~~s~~f~~~~~~q~----~~--~w~~~~~~L~~~a~~Le~~G   75 (230)
T COG1794           2 KTIGILGGMGPESTAPYYRKINEAVRAKLGGLHSAELLLYSVDFPEIETLQR----AG--EWDEAGEILIDAAKKLERAG   75 (230)
T ss_pred             CEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHEECCCCCCHHHHHC----CC--CCCCHHHHHHHHHHHHHHCC
T ss_conf             6267606788788999999999999998378676233122688655999873----67--65658999999999999659


Q ss_pred             CCEEEECCCCHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHH
Q ss_conf             878998056358899999986489978982858999999999
Q gi|254780905|r  192 TDVIVLACTHYPLIVHVFRQLSPWPVDWLDNSDSIARRARCL  233 (271)
Q Consensus       192 ~D~iILGCTHyPll~~~i~~~~~~~v~iIDpa~~va~~~~~~  233 (271)
                      +|.++|.|----.+.+.+++..  ++++++=.++++++++..
T Consensus        76 Ad~i~l~~NT~H~~~d~iq~~~--~iPllhIidaTa~~ik~~  115 (230)
T COG1794          76 ADFIVLPTNTMHKVADDIQKAV--GIPLLHIIDATAKAIKAA  115 (230)
T ss_pred             CCEEEEECCCHHHHHHHHHHHC--CCCEEHHHHHHHHHHHHC
T ss_conf             9989970773789999999854--997330789999998765


No 14 
>pfam01177 Asp_Glu_race Asp/Glu/Hydantoin racemase. This family contains aspartate racemase, glutamate racemase, hydantoin racemase and arylmalonate decarboxylase.
Probab=95.41  E-value=0.26  Score=29.10  Aligned_cols=53  Identities=11%  Similarity=0.141  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHCCCCCEEEECHHHHHHHH
Q ss_conf             9999999846541058878998056358899999986489978982858999999
Q gi|254780905|r  176 IKKEIEGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSPWPVDWLDNSDSIARRA  230 (271)
Q Consensus       176 ~~~~l~~~l~~~~~~~~D~iILGCTHyPll~~~i~~~~~~~v~iIDpa~~va~~~  230 (271)
                      ....+......+...++|.++++||=-+.+.+.+++..  +++++++.+++.+.+
T Consensus        49 ~~~~l~~~~~~l~~~g~d~iviaCnt~~~~~~~~~~~~--~ipvi~~~~a~~~a~  101 (212)
T pfam01177        49 PLERLLEAARRLAKAGADAIVIACNTAHALAGELREAT--DIPVIGIVEAALKAL  101 (212)
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHC--CCCEEEHHHHHHHHH
T ss_conf             79999999999986799999991765999999999872--998985478999999


No 15 
>PRK04965 nitric oxide reductase; Provisional
Probab=95.19  E-value=0.073  Score=32.74  Aligned_cols=65  Identities=17%  Similarity=0.313  Sum_probs=49.5

Q ss_pred             CCCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCC----------CCCCHHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf             48870798779105899999999689998999941578989----------898989999999999999862169848
Q gi|254780905|r   12 LQNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPY----------GNWEDHALKKRLMFLFSDILDKYQPVL   79 (271)
Q Consensus        12 ~~~~IgifDSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PY----------G~ks~~~I~~~~~~~~~~ll~k~~~~~   79 (271)
                      |+++|.|.=+|+.|++..++||+.-|+.++.-+++..+.||          +.++.+++.....   .++.++.++++
T Consensus         1 M~~~IVIIG~G~AG~~aa~~lR~~d~~~~Itvi~~e~~~~Y~rp~Ls~~~~~~~~~~~l~~~~~---~~~~~~~~I~l   75 (378)
T PRK04965          1 MSNGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPDLSHVFSQGQRADDLTRQSA---GEFAEQFNLRL   75 (378)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCHHHHCCCCCHHHHHCCCH---HHHHHHCCEEE
T ss_conf             9899999988299999999997119498699998999988767816698828999689531798---99987489799


No 16 
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=93.33  E-value=0.42  Score=27.65  Aligned_cols=64  Identities=17%  Similarity=0.216  Sum_probs=42.3

Q ss_pred             CCCCCC-CHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCH-HHHHHH
Q ss_conf             989898-989999999999999862169848997176202633899986257776544547-999999
Q gi|254780905|r   50 FPYGNW-EDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGAVP-AIKQAA  115 (271)
Q Consensus        50 ~PYG~k-s~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~~~~~ipiigii~-~~~~a~  115 (271)
                      -|-.-. ++++...+....+...++..+++.|++.|--.|.. -+.|+..| ++|||.-+. +++.+.
T Consensus       147 ~vL~l~~~~~~~~~~l~~~~~~a~~edgAeaIiLGCAGms~l-a~~Lq~~~-gvPVIDgv~Aav~~a~  212 (230)
T COG4126         147 PVLALEGPPEEAEALLVIEAAEALKEDGAEAIILGCAGMSDL-ADQLQKAF-GVPVIDGVAAAVKLAE  212 (230)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHH-HHHHHHHH-CCCCCCCHHHHHHHHH
T ss_conf             701036976789999999999986532888899858217779-99999971-9984665688999999


No 17 
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic; InterPro: IPR005787    Serine and threonine dehydratases ,  are functionally and structurally related pyridoxal-phosphate dependent enzymes. L-serine dehydratase () and D-serine dehydratase () catalyze the dehydratation of L-serine (respectively D-serine) into ammonia and pyruvate. Threonine dehydratase () (TDH) catalyzes the dehydratation of threonine into alpha-ketobutarate and ammonia. In Escherichia coli and other microorganisms, two classes of TDH are known to exist. One is involved in the biosynthesis of isoleucine, the other in hydroxamino acid catabolism. Threonine synthase () is also a pyridoxal-phosphate enzyme, it catalyzes the transformation of homoserine-phosphate into threonine. It has been shown  that threonine synthase is distantly related to the serine/threonine dehydratases. In all these enzymes, the pyridoxal-phosphate group is attached to a lysine residue.    This family describes a form of threonine dehydratase, with two copies of the threonine dehydratase C-terminal domain IPR001721 from INTERPRO. Members with known function participate in isoleucine biosynthesis and are inhibited by isoleucine.; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process.
Probab=92.95  E-value=0.47  Score=27.36  Aligned_cols=173  Identities=12%  Similarity=0.078  Sum_probs=103.5

Q ss_pred             HHCCCCC-EEEEECCCCCHHHHHHHHHHCCCCCCCCCC--HHHHHHHHHCCCC---------CEEEEECHHHHCCHHHHH
Q ss_conf             6216984-899717620263389998625777654454--7999999840788---------329985067731701689
Q gi|254780905|r   72 LDKYQPV-LSVIACNTAFTLIKDELRSTFPSMAFLGAV--PAIKQAAAYTQSG---------LISILSTPATLRRTYTSN  139 (271)
Q Consensus        72 l~k~~~~-~IVIACNTasa~~~~~l~~~~~~ipiigii--~~~~~a~~~~~~~---------~VgiLAT~~Ti~s~~y~~  139 (271)
                      -+|.|++ .|||+|+|++ +=.+.+|+.-..+=.-|.-  +|-..|...++.+         +=-|+|=+||+.=...++
T Consensus        86 a~~LG~~A~IVMP~tTP~-IKV~AVk~~GgeVvLhG~~y~~A~~~A~eL~q~~GlTfi~PFDdPlVIAGQGT~alEil~Q  164 (508)
T TIGR01124        86 AEKLGLKAVIVMPETTPD-IKVDAVKAFGGEVVLHGDNYDDAKDHAIELAQEKGLTFIHPFDDPLVIAGQGTVALEILRQ  164 (508)
T ss_pred             HHHCCCCEEEECCCCCCC-CCHHHEECCCCEEEEECCCHHHHHHHHHHHHHHCCCEEECCCCCCCEECCCHHHHHHHHHC
T ss_conf             631797269878888822-0012031269879973798579999999999736886527888864032510666876505


Q ss_pred             H-----------------------HHHCCCCCEEEECCCCCHHHHHHHHHHCCCCCH----------------HHHHHHH
Q ss_conf             9-----------------------851278857977056422578776642677697----------------9999999
Q gi|254780905|r  140 L-----------------------IHSYVSQCHIHLVSSMILASRVEEYACGIKIKE----------------DEIKKEI  180 (271)
Q Consensus       140 ~-----------------------i~~~~~~~~v~~~~~~~lv~~iE~~~~~~~~~~----------------~~~~~~l  180 (271)
                      .                       ++++.|+++|..+...+=.-|--....+.....                ++.-..=
T Consensus       165 ~~~~~davFVpvGGGGLiAGVA~~~K~l~P~IkvIGVEp~DS~am~~sL~AG~~V~L~~VGlFaDGVAVk~vG~~TF~LC  244 (508)
T TIGR01124       165 VAEDLDAVFVPVGGGGLIAGVAALVKQLMPEIKVIGVEPTDSDAMKQSLEAGERVDLDQVGLFADGVAVKEVGDETFRLC  244 (508)
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCCCCCCCCEEECCEEEHHHHHHHHHHH
T ss_conf             76847688871177368999999997228961899747865999999985688113771103426735400434458999


Q ss_pred             HHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHCCCCCEEEECHHHHHHH-HHHHHHHCCCCCCCCCCCEEEEECCCHHHH
Q ss_conf             9984654105887899805635889999998648997898285899999-999986427334577887799966997999
Q gi|254780905|r  181 EGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSPWPVDWLDNSDSIARR-ARCLLPRINTHQTRVFDDHALFLSGKPDIA  259 (271)
Q Consensus       181 ~~~l~~~~~~~~D~iILGCTHyPll~~~i~~~~~~~v~iIDpa~~va~~-~~~~L~~~~~~~~~~~~~~~f~~T~~~~~~  259 (271)
                      +.|++....-+.|.+   |+       .+|++|.+-=.|..||=++|-. ++++..+++....    +..-.+||.+=+|
T Consensus       245 ~~YvDd~v~VdtD~v---Ca-------AiKD~F~dtRav~EPaGALalAGLK~Yva~~g~~~~----~Lvai~sGAN~NF  310 (508)
T TIGR01124       245 QQYVDDIVRVDTDEV---CA-------AIKDLFEDTRAVLEPAGALALAGLKKYVAKHGIEGQ----TLVAITSGANMNF  310 (508)
T ss_pred             HHHCCCEEEECCHHH---HH-------HHHHHHHCHHHHCCHHHHHHHHHHHHHHHHCCCCCC----EEEEEECCCCCCC
T ss_conf             974455486264455---44-------555332221221050267899999999995489986----4688713675453


No 18 
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=92.70  E-value=0.33  Score=28.32  Aligned_cols=52  Identities=17%  Similarity=0.260  Sum_probs=38.3

Q ss_pred             HHHHHHHHHCCCCCEEEE--CCCCHHHHHHHHHHHCCCC-CEEEECHHHHHHHHH
Q ss_conf             999846541058878998--0563588999999864899-789828589999999
Q gi|254780905|r  180 IEGCFIEKEGKRTDVIVL--ACTHYPLIVHVFRQLSPWP-VDWLDNSDSIARRAR  231 (271)
Q Consensus       180 l~~~l~~~~~~~~D~iIL--GCTHyPll~~~i~~~~~~~-v~iIDpa~~va~~~~  231 (271)
                      ++..|..-...++|.+||  |+|..|.+++.+++.|+.. ..=|||-++||.=+.
T Consensus       297 v~~~L~~a~~~dId~ViLVGGsTRiP~Vq~~l~~~Fg~~~~~~inPDEaVA~GAA  351 (595)
T PRK01433        297 AQECLEQAGNPNIDGVILVGGATRIPLIKDELYKAFKVDILSDIDPDKAVVWGAA  351 (595)
T ss_pred             HHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
T ss_conf             9999997693535548996785545899999999858997789784789999899


No 19 
>pfam06723 MreB_Mbl MreB/Mbl protein. This family consists of bacterial MreB and Mbl proteins as well as two related archaeal sequences. MreB is known to be a rod shape-determining protein in bacteria and goes to make up the bacterial cytoskeleton. Genes coding for MreB/Mbl are only found in elongated bacteria, not in coccoid forms. It has been speculated that constituents of the eukaryotic cytoskeleton (tubulin, actin) may have evolved from prokaryotic precursor proteins closely related to today's bacterial proteins FtsZ and MreB/Mbl.
Probab=90.45  E-value=0.6  Score=26.64  Aligned_cols=45  Identities=11%  Similarity=0.055  Sum_probs=36.9

Q ss_pred             EEECCCCHHHHHHHHHHHCCCCCEE-EECHHHHHHHHHHHHHHCCC
Q ss_conf             9980563588999999864899789-82858999999999864273
Q gi|254780905|r  195 IVLACTHYPLIVHVFRQLSPWPVDW-LDNSDSIARRARCLLPRINT  239 (271)
Q Consensus       195 iILGCTHyPll~~~i~~~~~~~v~i-IDpa~~va~~~~~~L~~~~~  239 (271)
                      ++=|.|..|.+++.+++.|+.++.. +||-++||+=+.-.++..+.
T Consensus       279 LvGGsSriP~v~~~l~~~fg~~~~~~~nPd~aVA~GAAi~~~~~~~  324 (327)
T pfam06723       279 LTGGGALLRGLDKLLSDETGLPVHIAEDPLTCVALGTGKALENLDK  324 (327)
T ss_pred             EECCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCHHH
T ss_conf             9776244147999999997849888988677999989999857897


No 20 
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=88.72  E-value=1.2  Score=24.60  Aligned_cols=43  Identities=14%  Similarity=0.054  Sum_probs=35.8

Q ss_pred             EEECCCCHHHHHHHHHHHCCCCCEE-EECHHHHHHHHHHHHHHC
Q ss_conf             9980563588999999864899789-828589999999998642
Q gi|254780905|r  195 IVLACTHYPLIVHVFRQLSPWPVDW-LDNSDSIARRARCLLPRI  237 (271)
Q Consensus       195 iILGCTHyPll~~~i~~~~~~~v~i-IDpa~~va~~~~~~L~~~  237 (271)
                      ++=|.|..|.+++.+++.++.++.. +||-+.||+=+..+++..
T Consensus       281 LvGGssrip~v~~~l~~~~g~~~~~~~~P~~~Va~Gaai~~~~~  324 (325)
T PRK13928        281 MTGGGALLHGLDKLLAEETKVPVYIAEDPISCVALGTGKMLENI  324 (325)
T ss_pred             EECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf             98751332679999999978398778987779999999998526


No 21 
>PRK06820 type III secretion system ATPase; Validated
Probab=88.40  E-value=2.2  Score=22.93  Aligned_cols=108  Identities=12%  Similarity=0.148  Sum_probs=59.1

Q ss_pred             CCEEEE-ECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHH
Q ss_conf             870798-7791058999999996899989999415789898989899999999999998621698489971762026338
Q gi|254780905|r   14 NSILIF-DSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIK   92 (271)
Q Consensus        14 ~~Igif-DSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~   92 (271)
                      ..+||| |||+|==+++..+.+..-..-.||.+      -|+|..| +.+    .++.++...+-+--|+-|||+..-..
T Consensus       164 QR~gIfgg~GvGKT~Ll~~i~~~~~adv~V~~~------IGeRgrE-v~e----fie~~~~~~~~~rtvvV~atsd~p~~  232 (445)
T PRK06820        164 QRIGIFAAAGVGKSTLLSMLCADSAADVMVLAL------IGERGRE-VRE----FLEQVLTPEARARTVVVVATSDRPAL  232 (445)
T ss_pred             CCCEEECCCCCCCCHHHHHHHHHCCCCEEEEEE------EEEECHH-HHH----HHHHHHCCCCCCCEEEEECCCCCCHH
T ss_conf             742110689998122344565306788799998------7441289-999----99986423761106999416768989


Q ss_pred             HHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEECHHHHCCHHHHHH
Q ss_conf             999862577765445479999998407883299850677317016899
Q gi|254780905|r   93 DELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPATLRRTYTSNL  140 (271)
Q Consensus        93 ~~l~~~~~~ipiigii~~~~~a~~~~~~~~VgiLAT~~Ti~s~~y~~~  140 (271)
                      ..++.     |..++  ++.+.-. .+.++|.++.+.-|--...|.+.
T Consensus       233 ~R~~a-----~~~a~--aiAEyfr-d~Gk~VLli~DslTr~A~A~REi  272 (445)
T PRK06820        233 ERLKG-----LSTAT--TVAEYFR-ERGLKVLLLADSLTRYARAAREI  272 (445)
T ss_pred             HHHHH-----HHHHH--HHHHHHH-HCCCCEEEEECCHHHHHHHHHHH
T ss_conf             99999-----87611--4889998-67984899844657888899899


No 22 
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=87.59  E-value=1.2  Score=24.70  Aligned_cols=44  Identities=20%  Similarity=0.240  Sum_probs=35.7

Q ss_pred             HCCCCCEEEE--CCCCHHHHHHHHHHHCCCC-CEEEECHHHHHHHHH
Q ss_conf             1058878998--0563588999999864899-789828589999999
Q gi|254780905|r  188 EGKRTDVIVL--ACTHYPLIVHVFRQLSPWP-VDWLDNSDSIARRAR  231 (271)
Q Consensus       188 ~~~~~D~iIL--GCTHyPll~~~i~~~~~~~-v~iIDpa~~va~~~~  231 (271)
                      ....+|.+||  |+|..|.+++.++++|+.. .+-|||-++||.=+.
T Consensus       350 ~~~dId~VILVGGSTRIP~Vq~~l~~~Fgkep~~~iNPDEaVA~GAA  396 (657)
T PTZ00186        350 ELKEINDVVLVGGMTRMPKVVEEVKKFFQKDPFRGVNPDEAVALGAA  396 (657)
T ss_pred             CHHHEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
T ss_conf             98780089995784154799999999858997779791189999899


No 23 
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=87.44  E-value=2.5  Score=22.54  Aligned_cols=109  Identities=25%  Similarity=0.220  Sum_probs=61.6

Q ss_pred             CCEEEE-ECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHH
Q ss_conf             870798-7791058999999996899989999415789898989899999999999998621698489971762026338
Q gi|254780905|r   14 NSILIF-DSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIK   92 (271)
Q Consensus        14 ~~Igif-DSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~   92 (271)
                      ..+||| |||+|=-+.+..+.+. -+.+++.+|=     -|+|.+| +.++..    .++...+-+--|+-|||++.-..
T Consensus       138 QR~gIf~g~GvGKs~Ll~~ia~~-~~adv~Vial-----IGeR~re-v~efie----~~~~~~~~~~tvvv~atsd~p~~  206 (411)
T TIGR03496       138 QRIGIFAGSGVGKSVLLGMMARY-TEADVVVVGL-----IGERGRE-VKEFIE----EILGEEGLARSVVVAATADESPL  206 (411)
T ss_pred             CEEEECCCCCCCHHHHHHHHHHC-CCCCEEEEEC-----CCCCHHH-HHHHHH----HHHCCCCCCEEEEEEECCCCCHH
T ss_conf             63132279998677999999753-4898899953-----2530589-999999----86222565216999943889989


Q ss_pred             HHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEECHHHHCCHHHHHHH
Q ss_conf             9998625777654454799999984078832998506773170168998
Q gi|254780905|r   93 DELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPATLRRTYTSNLI  141 (271)
Q Consensus        93 ~~l~~~~~~ipiigii~~~~~a~~~~~~~~VgiLAT~~Ti~s~~y~~~i  141 (271)
                      ..++.     |..++  ++.+.- ..+.++|.++.+.-|--...+.+.-
T Consensus       207 ~r~~a-----~~~a~--aiAEyf-rd~G~~VLl~~Dsltr~A~A~REis  247 (411)
T TIGR03496       207 MRLRA-----AFYAT--AIAEYF-RDQGKDVLLLMDSLTRFAMAQREIA  247 (411)
T ss_pred             HHHHH-----HHHHH--HHHHHH-HHCCCCEEEEECCHHHHHHHHHHHH
T ss_conf             99999-----99999--999999-9669946999746889999998999


No 24 
>CHL00094 dnaK heat shock protein 70
Probab=87.28  E-value=1.1  Score=24.83  Aligned_cols=44  Identities=20%  Similarity=0.215  Sum_probs=34.6

Q ss_pred             CCCCCEEEE--CCCCHHHHHHHHHHHCCCC-CEEEECHHHHHHHHHH
Q ss_conf             058878998--0563588999999864899-7898285899999999
Q gi|254780905|r  189 GKRTDVIVL--ACTHYPLIVHVFRQLSPWP-VDWLDNSDSIARRARC  232 (271)
Q Consensus       189 ~~~~D~iIL--GCTHyPll~~~i~~~~~~~-v~iIDpa~~va~~~~~  232 (271)
                      ...+|.++|  |+|..|.+++.++++|+.. .+=+||-++||.=+.-
T Consensus       326 ~~dId~ViLVGGstRiP~V~~~l~~~fgk~~~~~inpDeaVA~GAAi  372 (622)
T CHL00094        326 KSDIDEVVLVGGSTRIPAIQELVKSLLGKDPNQSVNPDEVVAIGAAI  372 (622)
T ss_pred             HHHCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
T ss_conf             88943999938812567899999998589967796815899998999


No 25 
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=87.19  E-value=1.2  Score=24.71  Aligned_cols=41  Identities=17%  Similarity=0.287  Sum_probs=38.6

Q ss_pred             CCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCC
Q ss_conf             88707987791058999999996899989999415789898
Q gi|254780905|r   13 QNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYG   53 (271)
Q Consensus        13 ~~~IgifDSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG   53 (271)
                      ++.|.|.=+|..|++....||+.-++.++.-+++..+.||.
T Consensus         3 ~~~iVIIG~G~AG~~aA~~lR~~g~~g~Itli~~E~~~PY~   43 (400)
T PRK09754          3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYE   43 (400)
T ss_pred             CCEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC
T ss_conf             67299997759999999999806949979999899999886


No 26 
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=86.80  E-value=1.3  Score=24.41  Aligned_cols=45  Identities=20%  Similarity=0.208  Sum_probs=37.2

Q ss_pred             EEE--CCCCHHHHHHHHHHHCCCCCEE-EECHHHHHHHHHHHHHHCCC
Q ss_conf             998--0563588999999864899789-82858999999999864273
Q gi|254780905|r  195 IVL--ACTHYPLIVHVFRQLSPWPVDW-LDNSDSIARRARCLLPRINT  239 (271)
Q Consensus       195 iIL--GCTHyPll~~~i~~~~~~~v~i-IDpa~~va~~~~~~L~~~~~  239 (271)
                      ++|  |+|..|.+++.+++.++.++.. +||-+.||+=+...++..+-
T Consensus       285 IiLvGGsSriP~i~~~l~e~~g~~v~~~~~P~~aVA~GAAi~~~~~~~  332 (336)
T PRK13930        285 IVLTGGGALLRGLDKLLSEETGLPVHIAEDPLTCVARGTGKALENLDK  332 (336)
T ss_pred             EEEECCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCHHH
T ss_conf             999877455147999999997839888988777999999999858786


No 27 
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=86.73  E-value=1.6  Score=23.88  Aligned_cols=44  Identities=14%  Similarity=0.193  Sum_probs=35.1

Q ss_pred             HCCCCCEEEE--CCCCHHHHHHHHHHHCCCCC-EEEECHHHHHHHHH
Q ss_conf             1058878998--05635889999998648997-89828589999999
Q gi|254780905|r  188 EGKRTDVIVL--ACTHYPLIVHVFRQLSPWPV-DWLDNSDSIARRAR  231 (271)
Q Consensus       188 ~~~~~D~iIL--GCTHyPll~~~i~~~~~~~v-~iIDpa~~va~~~~  231 (271)
                      ....+|.+||  |+|..|.+++.++++|+... +-|||-++||.=+.
T Consensus       325 ~~~dId~ViLVGGsTRiP~Vq~~v~~~Fgk~~~~~inPDeaVA~GAA  371 (631)
T PRK00290        325 SVSDIDEVILVGGSTRMPAVQELVKEFFGKEPNKGVNPDEVVAVGAA  371 (631)
T ss_pred             CHHHEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
T ss_conf             82221599991782456799999999968897779691268998799


No 28 
>pfam07302 AroM AroM protein. This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL. The function of this family is unknown.
Probab=86.52  E-value=2.8  Score=22.22  Aligned_cols=180  Identities=18%  Similarity=0.232  Sum_probs=103.0

Q ss_pred             CCCCHHHHHHHHHHHCCC-CCEEEEECCCCCCCCC---CCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHH
Q ss_conf             791058999999996899-9899994157898989---898999999999999986216984899717620263389998
Q gi|254780905|r   21 SGIGGLIVLQKMRFLMPE-YHFIYVADDVGFPYGN---WEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIKDELR   96 (271)
Q Consensus        21 SGiGGLtv~~~l~~~lP~-~~~iY~~D~~~~PYG~---ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~   96 (271)
                      +.++|||--. +.+.-|. .+++.+   -|.+=|+   -|+..|..+..+.++.+ ++.|++.|++.|--.   + +.+.
T Consensus        33 GaLDgls~~e-I~~~aP~~ge~~Lv---TRL~DG~~v~~s~~~v~~~lq~~i~~L-e~~G~d~ilLlCTG~---F-~~l~  103 (221)
T pfam07302        33 GALDGLSREE-IAALAPGPGEDVLV---TRLRDGQQVTVSKQKIERRLQQVIEKL-DKEGVDVILLLCTGE---F-PKLS  103 (221)
T ss_pred             CCCCCCCHHH-HHHHCCCCCCCEEE---EEECCCCEEEEEHHHHHHHHHHHHHHH-HHCCCCEEEEEECCC---C-CCCC
T ss_conf             3557999999-99719999984416---870699878988899889899999999-867998999961477---8-9865


Q ss_pred             HHCCCCCCC---CCCHHHHHHHHHCCCCCEEEEECHHHHCCHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCCH
Q ss_conf             625777654---45479999998407883299850677317016899851278857977056422578776642677697
Q gi|254780905|r   97 STFPSMAFL---GAVPAIKQAAAYTQSGLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYACGIKIKE  173 (271)
Q Consensus        97 ~~~~~ipii---gii~~~~~a~~~~~~~~VgiLAT~~Ti~s~~y~~~i~~~~~~~~v~~~~~~~lv~~iE~~~~~~~~~~  173 (271)
                      .+-   +++   -|++....+.  ...+++||+---..-.+..- +......... +...+.|-.            .+.
T Consensus       104 ~~~---~ll~P~ril~~lV~a~--~~~~~lGVvvP~~eQ~~~~~-~kW~~~~~~~-~~~~asPy~------------~~~  164 (221)
T pfam07302       104 ARN---LLLEPQRILPPLVASI--VDGHQLGVIVPLPEQISQQA-NKWQKLVKEV-VVVAASPYH------------GSE  164 (221)
T ss_pred             CCC---CEEEHHHHHHHHHHHH--CCCCEEEEEECCHHHHHHHH-HHHHHCCCCC-EEEEECCCC------------CCH
T ss_conf             677---2441188678999986--78985999955799999999-9887458871-799718988------------988


Q ss_pred             HHHHHHHHHHHHHHHCCCCCEEEECCCCHHH-HHHHHHHHCCCCCEEEECHHHHHHHHHHHH
Q ss_conf             9999999998465410588789980563588-999999864899789828589999999998
Q gi|254780905|r  174 DEIKKEIEGCFIEKEGKRTDVIVLACTHYPL-IVHVFRQLSPWPVDWLDNSDSIARRARCLL  234 (271)
Q Consensus       174 ~~~~~~l~~~l~~~~~~~~D~iILGCTHyPl-l~~~i~~~~~~~v~iIDpa~~va~~~~~~L  234 (271)
                      ++    +...-.++.+.++|.+||-|=-|-- -++.+++.++  +.+|=|...+||-+..++
T Consensus       165 ~~----l~~Aa~~L~~~gadlivLDCiGYt~~~r~~~~~~~g--~PViLsr~lvARl~~Ell  220 (221)
T pfam07302       165 DR----LEEAARELLDQGADLIVLDCIGYTQAMKDMLQEALG--KPVLLSRVLVARLAAELL  220 (221)
T ss_pred             HH----HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHC--CCEEEHHHHHHHHHHHHH
T ss_conf             99----999999999759899999887774999999999869--999950899999999972


No 29 
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=86.41  E-value=1.8  Score=23.39  Aligned_cols=47  Identities=21%  Similarity=0.181  Sum_probs=40.4

Q ss_pred             EEE--CCCCHHHHHHHHHHHCCCCCEE-EECHHHHHHHHHHHHHHCCCCC
Q ss_conf             998--0563588999999864899789-8285899999999986427334
Q gi|254780905|r  195 IVL--ACTHYPLIVHVFRQLSPWPVDW-LDNSDSIARRARCLLPRINTHQ  241 (271)
Q Consensus       195 iIL--GCTHyPll~~~i~~~~~~~v~i-IDpa~~va~~~~~~L~~~~~~~  241 (271)
                      ++|  |.|-.|.+.+.+++.++.++.. .||-+.||+=+...|+..+.+.
T Consensus       287 IvLvGGss~ip~v~~~i~~~~g~~v~~~~~P~~~Va~GA~~~le~~~~~~  336 (338)
T PRK13927        287 IVLTGGGALLRGLDKLLSEETGLPVHVAEDPLTCVARGTGKALENIDKLG  336 (338)
T ss_pred             EEEECCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf             89987401426699999999784970179867899998999986678641


No 30 
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=86.40  E-value=1.8  Score=23.53  Aligned_cols=44  Identities=18%  Similarity=0.204  Sum_probs=34.9

Q ss_pred             HCCCCCEEEE--CCCCHHHHHHHHHHHCCCCC-EEEECHHHHHHHHH
Q ss_conf             1058878998--05635889999998648997-89828589999999
Q gi|254780905|r  188 EGKRTDVIVL--ACTHYPLIVHVFRQLSPWPV-DWLDNSDSIARRAR  231 (271)
Q Consensus       188 ~~~~~D~iIL--GCTHyPll~~~i~~~~~~~v-~iIDpa~~va~~~~  231 (271)
                      ....+|.+||  |+|..|.+++.++++|+... .=|||-+.||.=+.
T Consensus       330 ~~~dId~ViLVGGSTRiP~Vq~~v~~~Fgk~~~~~inPDeaVA~GAA  376 (621)
T PRK05183        330 EADEVLEVVMVGGSTRVPLVREAVGEFFGRTPLTSIDPDKVVALGAA  376 (621)
T ss_pred             CHHHCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
T ss_conf             83002099992885456689999999859896668990168887699


No 31 
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=86.31  E-value=2.8  Score=22.15  Aligned_cols=108  Identities=15%  Similarity=0.081  Sum_probs=58.8

Q ss_pred             CCEEEE-ECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHH
Q ss_conf             870798-7791058999999996899989999415789898989899999999999998621698489971762026338
Q gi|254780905|r   14 NSILIF-DSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIK   92 (271)
Q Consensus        14 ~~Igif-DSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~   92 (271)
                      ..+||| |+|+|==+++..+.+.....-.||.+      -|+|..| +.++    ++.+.+...-+--|+-|+|++.-..
T Consensus        70 QR~~Ifg~~g~GKt~Ll~~i~~~~~~~v~V~~~------IGer~re-v~e~----~~~~~~~~~l~~tvvv~atad~~~~  138 (326)
T cd01136          70 QRLGIFAGSGVGKSTLLGMIARGTTADVNVIAL------IGERGRE-VREF----IEKDLGEEGLKRSVVVVATSDESPL  138 (326)
T ss_pred             CEEEEECCCCCCCCHHHHHHHHCCCCCEEEEEE------ECCCHHH-HHHH----HHHHHCCCCCCCEEEEECCCCCCHH
T ss_conf             878743699998466787686414677599996------0533889-9999----9986245653222899606889989


Q ss_pred             HHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEECHHHHCCHHHHHH
Q ss_conf             999862577765445479999998407883299850677317016899
Q gi|254780905|r   93 DELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPATLRRTYTSNL  140 (271)
Q Consensus        93 ~~l~~~~~~ipiigii~~~~~a~~~~~~~~VgiLAT~~Ti~s~~y~~~  140 (271)
                      ..++.     |..++-  +.+-. ..+.++|.++-+.-|--...|.+.
T Consensus       139 ~r~~a-----~~~a~~--~AEyf-rd~G~dVL~~~Dsltr~A~A~rEi  178 (326)
T cd01136         139 LRVKA-----AYTATA--IAEYF-RDQGKDVLLLMDSLTRFAMAQREI  178 (326)
T ss_pred             HHHHH-----HHHHHH--HHHHH-HHCCCCEEEEECCHHHHHHHHHHH
T ss_conf             99998-----887777--78899-975873378752468999999998


No 32 
>PRK04117 consensus
Probab=85.75  E-value=3  Score=21.96  Aligned_cols=207  Identities=14%  Similarity=0.086  Sum_probs=99.0

Q ss_pred             CEEEEECCCCH--------HHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHH--HHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf             70798779105--------8999999996899989999415789898989899--9999999999986216984899717
Q gi|254780905|r   15 SILIFDSGIGG--------LIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHA--LKKRLMFLFSDILDKYQPVLSVIAC   84 (271)
Q Consensus        15 ~IgifDSGiGG--------Ltv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~--I~~~~~~~~~~ll~k~~~~~IVIAC   84 (271)
                      -+-|+-|..+.        |-...+++ ..-..++.-+  -=++||.-.++..  =.-.+.+.+..+++..|++-++ .-
T Consensus        52 dV~ivqs~~~p~nd~lmELll~~~a~r-~agA~~It~V--iPY~~YsRQDr~~~~ge~isak~vA~lL~~~G~d~vi-tv  127 (309)
T PRK04117         52 DVFIIQPTCAPANDNLMELLIMTDALR-RSSANSITAV--VPYFGYARQDRKAAPRVPITAKLVANLMQAAGIDRVV-TM  127 (309)
T ss_pred             CEEEECCCCCCCHHHHHHHHHHHHHHH-HCCCCEEEEE--ECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEE-EE
T ss_conf             889991799982488999999999998-7489738896--0355002144456999870189999888642776589-96


Q ss_pred             CCCCHHHHHHHHHHCCCCCCCCCC--HHHHHHHHHCCCCCEEEEECHHH--HCCHHHHHHHHHCCCCCEEEE--CCCCCH
Q ss_conf             620263389998625777654454--79999998407883299850677--317016899851278857977--056422
Q gi|254780905|r   85 NTAFTLIKDELRSTFPSMAFLGAV--PAIKQAAAYTQSGLISILSTPAT--LRRTYTSNLIHSYVSQCHIHL--VSSMIL  158 (271)
Q Consensus        85 NTasa~~~~~l~~~~~~ipiigii--~~~~~a~~~~~~~~VgiLAT~~T--i~s~~y~~~i~~~~~~~~v~~--~~~~~l  158 (271)
                      += |+   +.++.-| ++|+.++-  |............+.-|++....  -+...|.+.+   +.+.-+..  ...+.-
T Consensus       128 Dl-H~---~~i~~fF-~ip~~~l~~~~~~~~~i~~~~~~~~vvVsPD~Ga~~ra~~~A~~L---g~~~~~~~K~R~~~~~  199 (309)
T PRK04117        128 DL-HA---GQIQGFF-DIPVDNLYGSIVFRDYIKSKNLKNPIIASPDIGGVARARYFAKKL---GLDMVIVDKRREKANE  199 (309)
T ss_pred             CC-CH---HHHHHCC-CCCCCEEECCHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHC---CCCEEEEEECCCCCCC
T ss_conf             17-86---8874036-897330345387789999618887469715931999999998742---7887998511378885


Q ss_pred             H---HHHHHHHHCCC--CCHHHH--HHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHCC-----------------
Q ss_conf             5---78776642677--697999--99999984654105887899805635889999998648-----------------
Q gi|254780905|r  159 A---SRVEEYACGIK--IKEDEI--KKEIEGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSP-----------------  214 (271)
Q Consensus       159 v---~~iE~~~~~~~--~~~~~~--~~~l~~~l~~~~~~~~D~iILGCTHyPll~~~i~~~~~-----------------  214 (271)
                      +   +.+. ...+..  +-++.+  -..+-.....+++.|+..+...|||--|-.+.++++..                 
T Consensus       200 ~~~~~~~g-dV~Gk~vIIVDDiI~TGgTi~~aa~~L~~~GA~~V~~~~THglfs~~A~~rl~~s~i~~ivvTnTip~~~~  278 (309)
T PRK04117        200 SEVMNIIG-DVKGKDVILVDDMIDTAGTIVKAAEALKEKGATSVMACCTHAVLSGPAYERIAKGALDELVVTNTIPLKEE  278 (309)
T ss_pred             CCCCCCCC-CCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHCCCCEEEECCCCCCCCC
T ss_conf             43234456-64898689757256527999999999986699748999945545836999998389978998289877445


Q ss_pred             -CCCEEEECHHHHHHHHHHHH
Q ss_conf             -99789828589999999998
Q gi|254780905|r  215 -WPVDWLDNSDSIARRARCLL  234 (271)
Q Consensus       215 -~~v~iIDpa~~va~~~~~~L  234 (271)
                       ++++++|-+..+|+.+.+.-
T Consensus       279 ~~kl~~isVa~llAeaI~ri~  299 (309)
T PRK04117        279 LPKIKVLSVAPLFAEVIRRVY  299 (309)
T ss_pred             CCCEEEEEHHHHHHHHHHHHH
T ss_conf             998099883999999999986


No 33 
>cd06332 PBP1_aromatic_compounds_like Type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes. This group includes the type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes; their substrate specificities are not well characterized, however. Members also exhibit close similarity to active transport systems for short chain amides and/or urea found in bacteria and archaea.
Probab=85.49  E-value=3.1  Score=21.88  Aligned_cols=56  Identities=11%  Similarity=0.027  Sum_probs=31.6

Q ss_pred             CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf             98999941578989898989999999999999862169848997176202633899986257776544
Q gi|254780905|r   39 YHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLG  106 (271)
Q Consensus        39 ~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~~~~~ipiig  106 (271)
                      .+++ +.|+..-|          .......++|+++.++++|+=++.|..+.+...+-++. .+|++.
T Consensus        39 ielv-~~D~~~~p----------~~a~~~a~~Li~~d~V~~iiG~~~S~~~~a~~~~~~~~-~vp~i~   94 (333)
T cd06332          39 VEVV-VEDDELKP----------DVAVQAARKLIEQDKVDVVVGPVFSNVALAVVPSLTES-GTFLIS   94 (333)
T ss_pred             EEEE-EECCCCCH----------HHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHCC-CCEEEC
T ss_conf             8999-86799998----------99999999999618967997887867789864456315-841433


No 34 
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=85.27  E-value=1.9  Score=23.35  Aligned_cols=40  Identities=23%  Similarity=0.365  Sum_probs=36.9

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCC
Q ss_conf             7079877910589999999968999899994157898989
Q gi|254780905|r   15 SILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGN   54 (271)
Q Consensus        15 ~IgifDSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG~   54 (271)
                      .|.|.=+|.+|++...++++.-|+.+++-+.+..+.||..
T Consensus         3 kiVIIG~g~AG~~aA~~lrk~~~~~eItvi~~e~~~~y~~   42 (438)
T PRK13512          3 KIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFAN   42 (438)
T ss_pred             EEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCC
T ss_conf             0999898499999999999439199999996899888762


No 35 
>PRK13410 molecular chaperone DnaK; Provisional
Probab=84.99  E-value=1.7  Score=23.55  Aligned_cols=44  Identities=20%  Similarity=0.296  Sum_probs=34.6

Q ss_pred             HCCCCCEEEE--CCCCHHHHHHHHHHHCCCCC-EEEECHHHHHHHHH
Q ss_conf             1058878998--05635889999998648997-89828589999999
Q gi|254780905|r  188 EGKRTDVIVL--ACTHYPLIVHVFRQLSPWPV-DWLDNSDSIARRAR  231 (271)
Q Consensus       188 ~~~~~D~iIL--GCTHyPll~~~i~~~~~~~v-~iIDpa~~va~~~~  231 (271)
                      ....+|.|||  |+|..|.+++.++++|+... +=|+|-++||.=+.
T Consensus       325 ~~~dId~VILVGGSTRIP~Vq~~V~e~FGkep~~~iNPDEaVA~GAA  371 (719)
T PRK13410        325 SPVQIDEVVLVGGSTRMPMVKQLVRSLIDREPNQNVNPDEVVAVGAA  371 (719)
T ss_pred             CHHHEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
T ss_conf             94141399997882554889999999849997888997177503188


No 36 
>cd06359 PBP1_Nba_like Type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway. This group includes the type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway; their substrate specificities are not well characterized.
Probab=84.56  E-value=3.4  Score=21.61  Aligned_cols=55  Identities=9%  Similarity=-0.036  Sum_probs=31.2

Q ss_pred             CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf             8999941578989898989999999999999862169848997176202633899986257776544
Q gi|254780905|r   40 HFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLG  106 (271)
Q Consensus        40 ~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~~~~~ipiig  106 (271)
                      +++ +.|+..-|          .......++|+++.++.+|+=++.|..+.+...+-++. .+|++.
T Consensus        40 elv-~~D~~~dp----------~~a~~~a~~Li~~d~V~aiiG~~~S~~~~a~~~~~~~~-~vp~i~   94 (333)
T cd06359          40 EVV-VEDDGLKP----------DVAKQAAERLIKRDKVDFVTGVVFSNVLLAVVPPVLES-GTFYIS   94 (333)
T ss_pred             EEE-EECCCCCH----------HHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHC-CCEEEE
T ss_conf             999-86799998----------99999999999638963997687758899999999847-944761


No 37 
>pfam00012 HSP70 Hsp70 protein. Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region.
Probab=82.88  E-value=2.2  Score=22.82  Aligned_cols=44  Identities=16%  Similarity=0.228  Sum_probs=34.8

Q ss_pred             CCCCCEEEE--CCCCHHHHHHHHHHHCCCCC-EEEECHHHHHHHHHH
Q ss_conf             058878998--05635889999998648997-898285899999999
Q gi|254780905|r  189 GKRTDVIVL--ACTHYPLIVHVFRQLSPWPV-DWLDNSDSIARRARC  232 (271)
Q Consensus       189 ~~~~D~iIL--GCTHyPll~~~i~~~~~~~v-~iIDpa~~va~~~~~  232 (271)
                      ..++|.++|  |+|..|++++.++++|+..+ +-+||-++||.=+.-
T Consensus       323 ~~dId~ViLvGGssRiP~Vq~~l~~~fg~~~~~~inpdeaVa~GAA~  369 (598)
T pfam00012       323 KSEIDEVVLVGGSTRIPAVQELVKEFFGKEPSKTVNPDEAVAIGAAV  369 (598)
T ss_pred             HHHEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
T ss_conf             54512578618865676899999998689966686853142330899


No 38 
>PRK09099 type III secretion system ATPase; Provisional
Probab=82.78  E-value=4  Score=21.14  Aligned_cols=109  Identities=14%  Similarity=0.097  Sum_probs=62.3

Q ss_pred             CCEEEE-ECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHH
Q ss_conf             870798-7791058999999996899989999415789898989899999999999998621698489971762026338
Q gi|254780905|r   14 NSILIF-DSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIK   92 (271)
Q Consensus        14 ~~Igif-DSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~   92 (271)
                      ..+||| |||+|==|.+..+.+..-..-.||.      --|+|..| +    .+.++.++...+-+--|+-|+|++....
T Consensus       164 QR~gIf~gsGvGKstLl~~iar~~~~dv~V~~------lIGeRgrE-v----~efi~~~~~~~~l~~svvv~atsd~~~~  232 (441)
T PRK09099        164 QRMGIFAPAGVGKSTLMGMFARGTQCDVNVIA------LIGERGRE-V----REFIELILGEDGMARSVVVCATSDRSSI  232 (441)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCCCEEEE------ECCCCHHH-H----HHHHHHHHHCCCCCCEEEEEECCCCCHH
T ss_conf             63300158988789999989875136861688------63721389-9----9999997624563201798615889988


Q ss_pred             HHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEECHHHHCCHHHHHHH
Q ss_conf             9998625777654454799999984078832998506773170168998
Q gi|254780905|r   93 DELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPATLRRTYTSNLI  141 (271)
Q Consensus        93 ~~l~~~~~~ipiigii~~~~~a~~~~~~~~VgiLAT~~Ti~s~~y~~~i  141 (271)
                      ...+.     |..++  ++.+.- ..+.++|.++-..-|--...|.+.-
T Consensus       233 ~R~~a-----~~~a~--aiAEyf-rd~Gk~VLl~~DslTr~A~A~REis  273 (441)
T PRK09099        233 ERAKA-----AYAAT--AIAEYF-RDRGKRVLLMMDSLTRFARAQREIG  273 (441)
T ss_pred             HHHHH-----HHHHH--HHHHHH-HHCCCCEEEEECCHHHHHHHHHHHH
T ss_conf             99998-----77501--578899-8669818997076779999999999


No 39 
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=81.70  E-value=2.9  Score=22.10  Aligned_cols=45  Identities=13%  Similarity=0.207  Sum_probs=34.9

Q ss_pred             HCCCCCEEEE--CCCCHHHHHHHHHHHCC-CC-CEEEECHHHHHHHHHH
Q ss_conf             1058878998--05635889999998648-99-7898285899999999
Q gi|254780905|r  188 EGKRTDVIVL--ACTHYPLIVHVFRQLSP-WP-VDWLDNSDSIARRARC  232 (271)
Q Consensus       188 ~~~~~D~iIL--GCTHyPll~~~i~~~~~-~~-v~iIDpa~~va~~~~~  232 (271)
                      ....+|.++|  |+|-.|.+++.++++|+ .. .+=++|-++||.=+.-
T Consensus       329 ~~~dId~ViLVGGsTRiP~Vq~~l~~~f~gk~~~~~iNpDEaVA~GAAi  377 (657)
T PTZ00009        329 DKRSVHDVVLVGGSTRIPKVQSLISDFFNGKELNKSINPDEAVAYGAAV  377 (657)
T ss_pred             CHHHEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
T ss_conf             9525149998088146768999999981898888897831466654899


No 40 
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=81.28  E-value=4.6  Score=20.78  Aligned_cols=160  Identities=12%  Similarity=0.052  Sum_probs=81.5

Q ss_pred             HHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCC--HHHHHHHHHCCCCCEEEEECHH--HHCCHHHHH
Q ss_conf             999999986216984899717620263389998625777654454--7999999840788329985067--731701689
Q gi|254780905|r   64 LMFLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGAV--PAIKQAAAYTQSGLISILSTPA--TLRRTYTSN  139 (271)
Q Consensus        64 ~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~~~~~ipiigii--~~~~~a~~~~~~~~VgiLAT~~--Ti~s~~y~~  139 (271)
                      +.+.+..+++..|++-+ +..+= |  . +.++.-| ++|+-++-  |..............-|.+...  .-+...|.+
T Consensus       126 saklvA~lL~~aG~d~v-itvDl-H--~-~qiqgfF-~iPvd~l~a~~~l~~yi~~~~~~~~vVVsPD~G~~krA~~~A~  199 (331)
T PRK02812        126 TAKLVANLITKAGVDRV-LAMDL-H--S-AQIQGYF-DIPCDHIYGSPVLIDYLASKNLEDIVVVSPDVGGVARARAFAK  199 (331)
T ss_pred             CHHHHHHHHHHCCCCEE-EEECC-C--H-HHHHHCC-CCCCCCEECCCHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHH
T ss_conf             49999978873488758-87346-6--2-8886336-9974314676067999986288871797479408999999999


Q ss_pred             HHHHCCCCCEEE--ECCCCC------HHHHHHHHHHCCCCCHHHH--HHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHH
Q ss_conf             985127885797--705642------2578776642677697999--999999846541058878998056358899999
Q gi|254780905|r  140 LIHSYVSQCHIH--LVSSMI------LASRVEEYACGIKIKEDEI--KKEIEGCFIEKEGKRTDVIVLACTHYPLIVHVF  209 (271)
Q Consensus       140 ~i~~~~~~~~v~--~~~~~~------lv~~iE~~~~~~~~~~~~~--~~~l~~~l~~~~~~~~D~iILGCTHyPll~~~i  209 (271)
                      .+.  +....+.  ....+.      ++..++....  .+-++.+  -..+.+....+++.|+..+...|||=-|-.+.+
T Consensus       200 ~L~--~~~~a~~~K~R~~~~~~~~~~~vGdV~Gr~~--IIVDDiIdTGgTl~~aa~~Lk~~GA~~V~a~aTHgvfsg~A~  275 (331)
T PRK02812        200 KLN--DAPLAIIDKRRQAHNVAEVLNVIGDVKGKTA--ILVDDMIDTGGTICEGARLLRKEGAKRVYACATHAVFSPPAI  275 (331)
T ss_pred             HCC--CCCEEEEECCCCCCCCCEECCCCCCCCCCEE--EEECCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHH
T ss_conf             727--9958999424578884210244455456518--996214422799999999998579987899998965587799


Q ss_pred             HHHCCC---------------------CCEEEECHHHHHHHHHHH
Q ss_conf             986489---------------------978982858999999999
Q gi|254780905|r  210 RQLSPW---------------------PVDWLDNSDSIARRARCL  233 (271)
Q Consensus       210 ~~~~~~---------------------~v~iIDpa~~va~~~~~~  233 (271)
                      +++...                     +++++|-+..+|+...++
T Consensus       276 ~rl~~s~ii~~vvvTdTip~~~~~~~~ki~vlsvA~llAeaI~ri  320 (331)
T PRK02812        276 ERLSASGLFEEVIVTNTIPVPEERRFPQLKVLSVANMLGEAIWRI  320 (331)
T ss_pred             HHHHHCCCCCEEEEECCCCCCHHHCCCCCEEEEHHHHHHHHHHHH
T ss_conf             999728976779980894485000699819987389999999998


No 41 
>KOG0781 consensus
Probab=81.23  E-value=3.8  Score=21.32  Aligned_cols=31  Identities=19%  Similarity=0.185  Sum_probs=16.3

Q ss_pred             HHHHHHHHCCCCCEEEEECCCCCHHHHHHHHH
Q ss_conf             99999862169848997176202633899986
Q gi|254780905|r   66 FLFSDILDKYQPVLSVIACNTAFTLIKDELRS   97 (271)
Q Consensus        66 ~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~   97 (271)
                      +++-||+ +++....+.||+|--+=|.+.||-
T Consensus       397 KIayWLl-qNkfrVlIAACDTFRsGAvEQLrt  427 (587)
T KOG0781         397 KIAYWLL-QNKFRVLIAACDTFRSGAVEQLRT  427 (587)
T ss_pred             HHHHHHH-HCCCEEEEEECCCHHHHHHHHHHH
T ss_conf             9999998-578369998624312447899999


No 42 
>PRK13411 molecular chaperone DnaK; Provisional
Probab=80.93  E-value=3.3  Score=21.73  Aligned_cols=44  Identities=18%  Similarity=0.214  Sum_probs=33.7

Q ss_pred             HCCCCCEEEE--CCCCHHHHHHHHHHHCC-CC-CEEEECHHHHHHHHH
Q ss_conf             1058878998--05635889999998648-99-789828589999999
Q gi|254780905|r  188 EGKRTDVIVL--ACTHYPLIVHVFRQLSP-WP-VDWLDNSDSIARRAR  231 (271)
Q Consensus       188 ~~~~~D~iIL--GCTHyPll~~~i~~~~~-~~-v~iIDpa~~va~~~~  231 (271)
                      ....+|.+||  |+|..|.+++.++++|+ .. .+=|||-++||.=+.
T Consensus       324 ~~~dId~ViLVGGSTRIP~Vq~~v~~~F~gk~~~~~iNPDEaVA~GAA  371 (655)
T PRK13411        324 TPEDIDRIILVGGSTRIPAVQEAIQQFFGGKQPDRSVNPDEAVALGAA  371 (655)
T ss_pred             CHHHEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
T ss_conf             831178999988814657999999998289988889782168988699


No 43 
>PRK02118 V-type ATP synthase subunit B; Provisional
Probab=79.25  E-value=5.3  Score=20.35  Aligned_cols=108  Identities=19%  Similarity=0.143  Sum_probs=57.9

Q ss_pred             CCEEEEECCCC-HHH-HHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHH
Q ss_conf             87079877910-589-9999999689998999941578989898989999999999999862169848997176202633
Q gi|254780905|r   14 NSILIFDSGIG-GLI-VLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLI   91 (271)
Q Consensus        14 ~~IgifDSGiG-GLt-v~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~   91 (271)
                      ..|||| ||-| |-| .+..|.+.- +.+++-||     --|.|..|     ..+..+.+.+...-+-.|+-+||++--+
T Consensus       141 QKi~IF-sgsG~gks~L~~~Ia~~a-~~dvvV~~-----~iGer~~e-----~~~f~~~~~~~~~l~rtvlv~~ts~~p~  208 (432)
T PRK02118        141 QKIPIF-SSSGEPYNALLARIALQA-EADIIILG-----GMGLTFDD-----YLFFKDEFEKAGALDRTVMFVHTAVDPP  208 (432)
T ss_pred             CEEEEE-CCCCCCHHHHHHHHHHHC-CCCEEEEE-----CCEEECHH-----HHHHHHHHHHCCCCCEEEEEECCCCCCH
T ss_conf             569874-479997639999998853-89989640-----33244125-----8999998750687770799834777898


Q ss_pred             HHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEECHHHHCCHHHHHH
Q ss_conf             8999862577765445479999998407883299850677317016899
Q gi|254780905|r   92 KDELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPATLRRTYTSNL  140 (271)
Q Consensus        92 ~~~l~~~~~~ipiigii~~~~~a~~~~~~~~VgiLAT~~Ti~s~~y~~~  140 (271)
                      ...++     .|..++  ++.+-....+.++|.++.|.-|--...+.+.
T Consensus       209 ~~R~~-----~~~~al--tiAEyfr~d~G~~VLli~DdlTr~A~A~REI  250 (432)
T PRK02118        209 VECLL-----VPDMAL--AVAEKFAVEEGKKVLVLLTDMTNFADALKEI  250 (432)
T ss_pred             HHHHH-----HHHHHH--HHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
T ss_conf             99877-----888888--8999998745972999976678877788789


No 44 
>PRK10481 hypothetical protein; Provisional
Probab=78.59  E-value=5.5  Score=20.22  Aligned_cols=181  Identities=16%  Similarity=0.139  Sum_probs=99.4

Q ss_pred             CCCCHHHHHHHHHHHCCCC-CEEEEECCCCCCCCC---CCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHH
Q ss_conf             7910589999999968999-899994157898989---898999999999999986216984899717620263389998
Q gi|254780905|r   21 SGIGGLIVLQKMRFLMPEY-HFIYVADDVGFPYGN---WEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIKDELR   96 (271)
Q Consensus        21 SGiGGLtv~~~l~~~lP~~-~~iY~~D~~~~PYG~---ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~   96 (271)
                      +-++|||-- ++.+.-|.. +++.+   -|.+=|+   -|+..|..+..+.++.+ ++.|++.|++.|--.    ++.+.
T Consensus        35 GaLDgls~~-eI~~~aP~~ge~~Lv---TRL~DG~~V~~s~~~v~~~lq~~i~~l-e~~G~d~ilLlCTG~----F~~l~  105 (224)
T PRK10481         35 GLLDGLSRE-EIAAYAPEDGEDTLV---TRLRDGQQAHVSRQKVERDLQSVIEVL-DNQGYDVILLLCTGN----FPSLT  105 (224)
T ss_pred             CCCCCCCHH-HHHHCCCCCCCCEEE---EEECCCCEEEEEHHHHHHHHHHHHHHH-HHCCCCEEEEEECCC----CCCCC
T ss_conf             245789989-998619999985427---880699879988899788899999999-867998999972467----88866


Q ss_pred             HHCCCCCCC---CCCHHHHHHHHHCCCCCEEEEECHHHHCCHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCCH
Q ss_conf             625777654---45479999998407883299850677317016899851278857977056422578776642677697
Q gi|254780905|r   97 STFPSMAFL---GAVPAIKQAAAYTQSGLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYACGIKIKE  173 (271)
Q Consensus        97 ~~~~~ipii---gii~~~~~a~~~~~~~~VgiLAT~~Ti~s~~y~~~i~~~~~~~~v~~~~~~~lv~~iE~~~~~~~~~~  173 (271)
                      .+  +..++   -|++....+.  ...+++||+.--..-.+..-+ .-+...... +...+.|-.            ...
T Consensus       106 ~~--~~lll~P~ril~~lV~ai--~~~~~lGVvvP~~eQ~~~~~~-kW~~~~~~~-~~~~asPY~------------g~~  167 (224)
T PRK10481        106 AR--NTLLLEPSRILPPLVAAI--VDGHQLGVIVPVEEQLALQAK-KWQVLQKPP-VVSLASPYH------------GSE  167 (224)
T ss_pred             CC--CCEEECHHHHHHHHHHHH--CCCCEEEEEECCHHHHHHHHH-HHHHCCCCE-EEEEECCCC------------CCH
T ss_conf             67--843651588668999985--689869999627899999999-887347861-699837988------------988


Q ss_pred             HHHHHHHHHHHHHHHCCCCCEEEECCCCHHH-HHHHHHHHCCCCCEEEECHHHHHHHHHHHH
Q ss_conf             9999999998465410588789980563588-999999864899789828589999999998
Q gi|254780905|r  174 DEIKKEIEGCFIEKEGKRTDVIVLACTHYPL-IVHVFRQLSPWPVDWLDNSDSIARRARCLL  234 (271)
Q Consensus       174 ~~~~~~l~~~l~~~~~~~~D~iILGCTHyPl-l~~~i~~~~~~~v~iIDpa~~va~~~~~~L  234 (271)
                      +.    +...-.++..+++|.+||-|=-|-. -++.+++.++  +.+|=|...+||-+.++|
T Consensus       168 ~~----l~~Aa~~L~~~gadlivLDCiGYt~~~r~~~~~~~g--~PViLsr~lvARl~~Ell  223 (224)
T PRK10481        168 QK----LIDAGKELLAQGADLIVLDCLGYHQRHRDLLQKALD--VPVLLSNVLVARLAAELL  223 (224)
T ss_pred             HH----HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHC--CCEEEEHHHHHHHHHHHH
T ss_conf             99----999999998659999999877775999999999859--999951899999999862


No 45 
>pfam06506 PrpR_N Propionate catabolism activator. This domain is found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate.
Probab=78.30  E-value=5.6  Score=20.16  Aligned_cols=131  Identities=14%  Similarity=0.091  Sum_probs=75.5

Q ss_pred             HHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCC-------HHHHHHHHHCCCCCEEEEECHHHHC-C
Q ss_conf             9999999986216984899717620263389998625777654454-------7999999840788329985067731-7
Q gi|254780905|r   63 RLMFLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGAV-------PAIKQAAAYTQSGLISILSTPATLR-R  134 (271)
Q Consensus        63 ~~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~~~~~ipiigii-------~~~~~a~~~~~~~~VgiLAT~~Ti~-s  134 (271)
                      -..+....+. +.|++.|+-.=.||     ..+|++. ++|++.|.       .+++.+-..  .++||+++=+.++. .
T Consensus        20 ~av~~a~~~~-~~g~dvIIsRGgta-----~~ir~~~-~iPVv~I~~s~~Dil~al~~a~~~--~~kiavvg~~~~~~~~   90 (169)
T pfam06506        20 DAVEVARALV-AEGVDVIISRGGTA-----AYLRDRL-SVPVVEIKVSGFDLLRALARARRY--GGRIGLVGYENIIPGL   90 (169)
T ss_pred             HHHHHHHHHH-HCCCCEEEECCHHH-----HHHHHHC-CCCEEEEECCHHHHHHHHHHHHHH--CCCEEEEECCCCCHHH
T ss_conf             9999999999-77995999896589-----9999858-998899827886999999999975--8979999276303689


Q ss_pred             HHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHCC
Q ss_conf             01689985127885797705642257877664267769799999999984654105887899805635889999998648
Q gi|254780905|r  135 TYTSNLIHSYVSQCHIHLVSSMILASRVEEYACGIKIKEDEIKKEIEGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSP  214 (271)
Q Consensus       135 ~~y~~~i~~~~~~~~v~~~~~~~lv~~iE~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~iILGCTHyPll~~~i~~~~~  214 (271)
                      ..+.+.+   +-++..+....                 .++++.    .+..++.+|++ +|.|.+.-.    .+.+.++
T Consensus        91 ~~~~~il---~~~i~~~~~~~-----------------~~e~~~----~i~~l~~~G~~-vvVG~~~~~----~~A~~~G  141 (169)
T pfam06506        91 KALSELL---GLDIVQRAYQS-----------------EEEARA----AVKELKAQGIK-VIVGDGLVC----DLAEQAG  141 (169)
T ss_pred             HHHHHHH---CCCEEEEEECC-----------------HHHHHH----HHHHHHHCCCE-EEECCCHHH----HHHHHCC
T ss_conf             9999996---99359999668-----------------899999----99999986995-998582899----9999839


Q ss_pred             CCCEEEECHHHHHHHHH
Q ss_conf             99789828589999999
Q gi|254780905|r  215 WPVDWLDNSDSIARRAR  231 (271)
Q Consensus       215 ~~v~iIDpa~~va~~~~  231 (271)
                      -+--+|.+++.-.++..
T Consensus       142 l~~vli~sg~eSI~~A~  158 (169)
T pfam06506       142 LQGVLIYSGKESVREAF  158 (169)
T ss_pred             CCEEEEECCHHHHHHHH
T ss_conf             95799966789999999


No 46 
>PRK05038 consensus
Probab=77.45  E-value=6  Score=20.00  Aligned_cols=206  Identities=13%  Similarity=0.101  Sum_probs=103.2

Q ss_pred             EEEEECCCCH-------H-HHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHH--H-HHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf             0798779105-------8-9999999968999899994157898989898999--9-99999999986216984899717
Q gi|254780905|r   16 ILIFDSGIGG-------L-IVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHAL--K-KRLMFLFSDILDKYQPVLSVIAC   84 (271)
Q Consensus        16 IgifDSGiGG-------L-tv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I--~-~~~~~~~~~ll~k~~~~~IVIAC   84 (271)
                      +-|+-|..+-       | -...+++ +.-..++.-+  -=++||.-.++..-  + -.+.+.+..+++..|++-| +.+
T Consensus        53 V~ivqs~~~p~nd~lmELll~idA~r-~a~A~~It~V--iPY~~YaRQDr~~~~g~~pIsak~vA~ll~~~g~d~v-itv  128 (315)
T PRK05038         53 VFIIQSTCAPTNDNLMELVVMVDALR-RASAGRITAV--IPYFGYARQDRRVRSARVPITAKVVADFLSSVGVDRV-LTV  128 (315)
T ss_pred             EEEECCCCCCCCHHHHHHHHHHHHHH-HCCCCCEEEE--ECCCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCEE-EEE
T ss_conf             89985899995178999999999998-7388726998--3254323477555688887019999999985388759-996


Q ss_pred             CCCCHHHHHHHHHHCCCCCCCCCC--HHHHHHHHHCCCCCEEEEECHHH--HCCHHHHHHHHHCCCCCEEE--ECCCCC-
Q ss_conf             620263389998625777654454--79999998407883299850677--31701689985127885797--705642-
Q gi|254780905|r   85 NTAFTLIKDELRSTFPSMAFLGAV--PAIKQAAAYTQSGLISILSTPAT--LRRTYTSNLIHSYVSQCHIH--LVSSMI-  157 (271)
Q Consensus        85 NTasa~~~~~l~~~~~~ipiigii--~~~~~a~~~~~~~~VgiLAT~~T--i~s~~y~~~i~~~~~~~~v~--~~~~~~-  157 (271)
                      +- |+   +.++.-| ++|+-++.  |............+.-|++....  -+...|.+.+..  .+..+.  ...... 
T Consensus       129 Dl-H~---~~i~gfF-~iPvdnl~a~~~~~~~~~~~~~~~~vVVsPD~g~~~ra~~~A~~l~~--~~~~~~~K~R~~~~~  201 (315)
T PRK05038        129 DL-HA---EQIQGFF-DVPVDNVFGSPILLEDMLQKNLDNPIVVSPDIGGVVRARAIAKLLND--TDMAIIDKRRPRANV  201 (315)
T ss_pred             CC-CH---HHHHHHC-CCCHHHEECHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHCC--CCEEEEEEECCCCCC
T ss_conf             58-85---8986345-89711110419999999970888757981591499999999987089--877999850378873


Q ss_pred             -----HHHHHHHHHHCCCCCHHHH--HHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHCC----------------
Q ss_conf             -----2578776642677697999--99999984654105887899805635889999998648----------------
Q gi|254780905|r  158 -----LASRVEEYACGIKIKEDEI--KKEIEGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSP----------------  214 (271)
Q Consensus       158 -----lv~~iE~~~~~~~~~~~~~--~~~l~~~l~~~~~~~~D~iILGCTHyPll~~~i~~~~~----------------  214 (271)
                           ++..++.. ... +-++.+  -..+-.....++++|+..+..-|||--|-.+..+++..                
T Consensus       202 ~~~~~~~gdV~Gk-~~i-IVDDiIdTGgTl~~aa~~Lk~~GA~~V~~~~THglfs~~A~~~l~~s~i~~ivvTnTip~~~  279 (315)
T PRK05038        202 SQVMHIIGDVAGR-DCI-LVDDMIDTGGTLCKAAEALKERGAKRVFAYATHPVFSGNAAENIRNSVIDEVIVTDTIPLSD  279 (315)
T ss_pred             CEEECCCCCCCCC-EEE-EECCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHCCCCCEEEEECCCCCCH
T ss_conf             1440345643441-379-97572225158999999999659986359986535583699998608998899928977894


Q ss_pred             -----CCCEEEECHHHHHHHHHHHH
Q ss_conf             -----99789828589999999998
Q gi|254780905|r  215 -----WPVDWLDNSDSIARRARCLL  234 (271)
Q Consensus       215 -----~~v~iIDpa~~va~~~~~~L  234 (271)
                           ++++++|-+..+|+.+.++-
T Consensus       280 ~~~~~~kl~vlsva~llAeaI~ri~  304 (315)
T PRK05038        280 EIKALPKVRTLTLSGMLAEAIRRIS  304 (315)
T ss_pred             HHCCCCCEEEEEHHHHHHHHHHHHH
T ss_conf             5635898199982999999999985


No 47 
>COG1578 Uncharacterized conserved protein [Function unknown]
Probab=76.29  E-value=6.4  Score=19.80  Aligned_cols=16  Identities=19%  Similarity=0.391  Sum_probs=7.7

Q ss_pred             HHHCCCCCEEEEECCC
Q ss_conf             9968999899994157
Q gi|254780905|r   33 RFLMPEYHFIYVADDV   48 (271)
Q Consensus        33 ~~~lP~~~~iY~~D~~   48 (271)
                      .+.+.+++++|++|++
T Consensus       146 ~~~l~~a~VlYl~DNa  161 (285)
T COG1578         146 LELLKNASVLYLTDNA  161 (285)
T ss_pred             HHHHCCCCEEEEECCC
T ss_conf             8885158489992587


No 48 
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=76.15  E-value=6.3  Score=19.85  Aligned_cols=58  Identities=19%  Similarity=0.378  Sum_probs=45.9

Q ss_pred             CCCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCC---------CCCCHHHHHHHHHHHHH
Q ss_conf             48870798779105899999999689998999941578989---------89898999999999999
Q gi|254780905|r   12 LQNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPY---------GNWEDHALKKRLMFLFS   69 (271)
Q Consensus        12 ~~~~IgifDSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PY---------G~ks~~~I~~~~~~~~~   69 (271)
                      +...|.|.-+|-|||..++.+.+.+|+.++.-+-.+.++++         |+.+.++|.--...++.
T Consensus         2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~   68 (405)
T COG1252           2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLR   68 (405)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHCCCCCHHHEECCHHHHHC
T ss_conf             9756999898679999999764167887189991887666630335563287775652130899842


No 49 
>PRK01999 consensus
Probab=75.82  E-value=6.6  Score=19.72  Aligned_cols=194  Identities=11%  Similarity=-0.006  Sum_probs=94.7

Q ss_pred             HHHHHHHCCCCCEEEEECCCCCCCCCCCHHHH--HHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf             99999968999899994157898989898999--9999999999862169848997176202633899986257776544
Q gi|254780905|r   29 LQKMRFLMPEYHFIYVADDVGFPYGNWEDHAL--KKRLMFLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLG  106 (271)
Q Consensus        29 ~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I--~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~~~~~ipiig  106 (271)
                      +-...++.-..++.-+  -=++||.-..+.+-  .-.+.+.+..+++..|++-+ +..+- |+   +.++.-| ++|+-+
T Consensus        74 ~~dA~r~~~A~~It~V--iPY~~YaRQDr~~~~~e~isak~va~lL~~~G~d~v-itvDl-H~---~~i~gfF-~ipv~~  145 (311)
T PRK01999         74 MIDAAKRASARSITAV--IPYFGWARQDRKDKPRVSIGAKLVADLLSVAGIDRL-ITMDL-HA---DQIQGFF-DKPVDH  145 (311)
T ss_pred             HHHHHHHCCCCEEEEE--CCCCCCCCCCCCCCCCCCEEHHHHHHHHHCCCCCEE-EEEEC-CC---HHHHHCC-CCCCCC
T ss_conf             9988986588638996--255443337665689986767774434301578658-99826-83---8887447-998764


Q ss_pred             CC--HHHHHHHHHCCCCCEEEEECHHHH--CCHHHHHHHHHCCCCCEEE--ECCCC------CHHHHHHHHHHCCCCCHH
Q ss_conf             54--799999984078832998506773--1701689985127885797--70564------225787766426776979
Q gi|254780905|r  107 AV--PAIKQAAAYTQSGLISILSTPATL--RRTYTSNLIHSYVSQCHIH--LVSSM------ILASRVEEYACGIKIKED  174 (271)
Q Consensus       107 ii--~~~~~a~~~~~~~~VgiLAT~~Ti--~s~~y~~~i~~~~~~~~v~--~~~~~------~lv~~iE~~~~~~~~~~~  174 (271)
                      +-  |............++-|.+....-  +...|.+.+.   .+.-+.  ....+      .++..++ |.... +-++
T Consensus       146 l~a~~~~~~~~~~~~~~~~vvVsPD~g~~kra~~~A~~Lg---~~~~~~~K~R~~~~~v~~~~~~gdV~-Gk~~I-IVDD  220 (311)
T PRK01999        146 LYASTVFLPYIRSLKLDNLVIATPDVGGSKRASAYSKYLG---VPVVICYKSREKANEIASMQIIGDVK-GKNVI-LVDD  220 (311)
T ss_pred             CCCCHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHC---CCEEEEECCCCCCCCCEECCCCCCCC-CCEEE-EECC
T ss_conf             4375889999996398760898159049999999998617---87233110246788411313343547-96699-9754


Q ss_pred             HH--HHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHCC------------------CCCEEEECHHHHHHHHHHHH
Q ss_conf             99--99999984654105887899805635889999998648------------------99789828589999999998
Q gi|254780905|r  175 EI--KKEIEGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSP------------------WPVDWLDNSDSIARRARCLL  234 (271)
Q Consensus       175 ~~--~~~l~~~l~~~~~~~~D~iILGCTHyPll~~~i~~~~~------------------~~v~iIDpa~~va~~~~~~L  234 (271)
                      .+  -..+.+....+++.|+..+...|||--|-.+.++++..                  ++++++|-+..+|+.++++.
T Consensus       221 iIdTGgTl~~aa~~L~~~GA~~V~~~~THglfs~~A~~rl~~s~i~~iv~TdTip~~~~~~k~~visva~llAeaI~ri~  300 (311)
T PRK01999        221 MVDTAGTITKAADLMMEKGAKSVRAIASHAVMSGPASERVENSKLTEMIFTDSIPYRKKCSKVKVLSVADLFAEAIKRVM  300 (311)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCEEEEHHHHHHHHHHHHH
T ss_conf             44434789999999985599738999945545855999997489988998378558556998489876899999999986


Q ss_pred             H
Q ss_conf             6
Q gi|254780905|r  235 P  235 (271)
Q Consensus       235 ~  235 (271)
                      .
T Consensus       301 ~  301 (311)
T PRK01999        301 N  301 (311)
T ss_pred             C
T ss_conf             7


No 50 
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase).  A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=74.98  E-value=6.9  Score=19.57  Aligned_cols=110  Identities=15%  Similarity=0.103  Sum_probs=61.9

Q ss_pred             CCEEEE-ECCCCHHHHHHHHHHH-----CCCCCE-EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf             870798-7791058999999996-----899989-999415789898989899999999999998621698489971762
Q gi|254780905|r   14 NSILIF-DSGIGGLIVLQKMRFL-----MPEYHF-IYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNT   86 (271)
Q Consensus        14 ~~Igif-DSGiGGLtv~~~l~~~-----lP~~~~-iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNT   86 (271)
                      ..+||| |||+|-=+.+-.+.+.     ..+.++ ||      +--|+|.+| +.    +.++.+.+...-+--|+-++|
T Consensus        70 QR~gIfgg~GvGKs~L~~~i~~~~~~~~~~~~~v~V~------~~IGer~re-v~----e~~~~l~~~~~l~~tvvv~at  138 (276)
T cd01135          70 QKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVF------AAMGITMED-AR----FFKDDFEETGALERVVLFLNL  138 (276)
T ss_pred             CEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEE------EECCEEHHH-HH----HHHHHHHCCCCCCCEEEEEEC
T ss_conf             6633205788636789999999877513688735999------615553257-99----999998716651210146634


Q ss_pred             CCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEECHHHHCCHHHHHHH
Q ss_conf             0263389998625777654454799999984078832998506773170168998
Q gi|254780905|r   87 AFTLIKDELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPATLRRTYTSNLI  141 (271)
Q Consensus        87 asa~~~~~l~~~~~~ipiigii~~~~~a~~~~~~~~VgiLAT~~Ti~s~~y~~~i  141 (271)
                      ++.......+.     |..++  ++.+--...+.++|.++-..-|--...|.+.-
T Consensus       139 a~~~p~~r~~a-----~~~a~--aiAEyFr~~~Gk~VLl~~D~ltr~A~A~REis  186 (276)
T cd01135         139 ANDPTIERIIT-----PRMAL--TTAEYLAYEKGKHVLVILTDMTNYAEALREIS  186 (276)
T ss_pred             CCCCHHHHHHH-----HHHHH--HHHHHHHHHCCCCEEEEECCHHHHHHHHHHHH
T ss_conf             88976888788-----88877--89999887369977999456889999999999


No 51 
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=74.61  E-value=7.1  Score=19.51  Aligned_cols=107  Identities=17%  Similarity=0.135  Sum_probs=58.4

Q ss_pred             CCEEEE-ECCCCHHHHHHHHHHHCCCCCE-EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHH
Q ss_conf             870798-7791058999999996899989-99941578989898989999999999999862169848997176202633
Q gi|254780905|r   14 NSILIF-DSGIGGLIVLQKMRFLMPEYHF-IYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLI   91 (271)
Q Consensus        14 ~~Igif-DSGiGGLtv~~~l~~~lP~~~~-iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~   91 (271)
                      ..+||| +||+|==+.+..+.+..- .++ +|.+      -|+|..| +.++..    ..+...+.+--|+-|||++.-.
T Consensus       138 QRigIfag~GvGKt~Ll~~ia~~~~-adv~Vi~l------iGERgrE-v~ef~~----~~l~~~~l~rtvvv~atsd~p~  205 (413)
T TIGR03497       138 QRVGIFAGSGVGKSTLLGMIARNAK-ADINVIAL------IGERGRE-VRDFIE----KDLGEEGLKRSVVVVATSDQPA  205 (413)
T ss_pred             CEEEECCCCCCCHHHHHHHHHHHHC-CCCCEEEE------EEEECHH-HHHHHH----HHHCCCCCCEEEEEEECCCCCH
T ss_conf             5442105899877699999998743-78523888------6332289-999999----8631256421599984587887


Q ss_pred             HHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEECHHHHCCHHHHHH
Q ss_conf             8999862577765445479999998407883299850677317016899
Q gi|254780905|r   92 KDELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPATLRRTYTSNL  140 (271)
Q Consensus        92 ~~~l~~~~~~ipiigii~~~~~a~~~~~~~~VgiLAT~~Ti~s~~y~~~  140 (271)
                      ...++.     |..++  ++.+.-. .+.++|.++.+.-|--...+.+.
T Consensus       206 ~~r~~a-----~~~a~--aiAEyfr-d~Gk~VLl~~Dsltr~A~A~REi  246 (413)
T TIGR03497       206 LMRLKA-----AFTAT--AIAEYFR-DQGKDVLLMMDSVTRFAMAQREI  246 (413)
T ss_pred             HHHHHH-----HHHHH--HHHHHHH-HCCCCEEEEEECCHHHHHHHHHH
T ss_conf             999887-----74632--7899998-67996899973712988999999


No 52 
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=73.71  E-value=5.9  Score=20.02  Aligned_cols=47  Identities=19%  Similarity=0.028  Sum_probs=38.4

Q ss_pred             EEECCCCHHHHHHHHHHHCCCCCEE-EECHHHHHHHHHHHHHHCCCCC
Q ss_conf             9980563588999999864899789-8285899999999986427334
Q gi|254780905|r  195 IVLACTHYPLIVHVFRQLSPWPVDW-LDNSDSIARRARCLLPRINTHQ  241 (271)
Q Consensus       195 iILGCTHyPll~~~i~~~~~~~v~i-IDpa~~va~~~~~~L~~~~~~~  241 (271)
                      ++=|.|-.|.+.+.+++.++.++.. +||-+.||+=+...++..+.++
T Consensus       284 LvGG~srip~i~~~l~~~~~~~v~~~~nP~~~Va~GAa~~~~~i~~~~  331 (335)
T PRK13929        284 LTGGGALLNGIKEWLSQEIVVPVHVAANPLESVAIGTGRSLEVIDKLQ  331 (335)
T ss_pred             EECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             977404326799999999781987798867679998999997699999


No 53 
>cd06360 PBP1_alkylbenzenes_like Type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene. This group includes the type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; their substrate specificity is not well characterized, however.
Probab=73.47  E-value=7.5  Score=19.33  Aligned_cols=56  Identities=13%  Similarity=0.125  Sum_probs=34.0

Q ss_pred             CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf             98999941578989898989999999999999862169848997176202633899986257776544
Q gi|254780905|r   39 YHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLG  106 (271)
Q Consensus        39 ~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~~~~~ipiig  106 (271)
                      .+++ +.|+..-|          ..+...+++|+++.++++|+=++.+..+.+...+-++. .+|++.
T Consensus        39 ielv-~~D~~~~p----------~~a~~~a~~Li~~d~V~aiiG~~~S~~~~a~~~~~~~~-~vp~i~   94 (336)
T cd06360          39 VEFV-VEDDEAKP----------DVAVEKARKLIEQDKVDVVVGPVHSGEALAMVKVLREP-GTPLIN   94 (336)
T ss_pred             EEEE-EECCCCCH----------HHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHC-CCEEEC
T ss_conf             8999-86799998----------99999999998549963885576707655333999850-953431


No 54 
>pfam02548 Pantoate_transf Ketopantoate hydroxymethyltransferase. Ketopantoate hydroxymethyltransferase (EC:2.1.2.11) is the first enzyme in the pantothenate biosynthesis pathway.
Probab=71.29  E-value=8.4  Score=19.01  Aligned_cols=67  Identities=7%  Similarity=0.111  Sum_probs=41.4

Q ss_pred             HHHHHHHCCCCCEEEEECCCCCCCCC--CCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf             99999968999899994157898989--8989999999999999862169848997176202633899986257776544
Q gi|254780905|r   29 LQKMRFLMPEYHFIYVADDVGFPYGN--WEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLG  106 (271)
Q Consensus        29 ~~~l~~~lP~~~~iY~~D~~~~PYG~--ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~~~~~ipiig  106 (271)
                      .+..++--|+.- +    .+-+|||+  .|.++..+    ...++++..|+++|=+-|+.-+.-..+.|.+.  +||+.|
T Consensus        68 ~~aV~rga~~~~-i----v~DmPf~sy~~s~~~a~~----nA~rlmke~GadaVKlEgg~~~~~~I~~l~~~--GIPV~g  136 (261)
T pfam02548        68 TKAVARGAPRAF-V----VADMPFGSYEASPEQALR----NAARLMKEAGADAVKLEGGAEMADTIKALVDR--GIPVMG  136 (261)
T ss_pred             HHHHHHHCCCCE-E----EECCCCCCCCCCHHHHHH----HHHHHHHHCCCCEEEECCCCCHHHHHHHHHHC--CCCEEE
T ss_conf             999985288864-9----947875324679999999----99999985499989978885358999999988--997653


No 55 
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=68.99  E-value=9.4  Score=18.69  Aligned_cols=40  Identities=18%  Similarity=0.237  Sum_probs=34.3

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCC
Q ss_conf             7079877910589999999968999899994157898989
Q gi|254780905|r   15 SILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGN   54 (271)
Q Consensus        15 ~IgifDSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG~   54 (271)
                      .|.|.=+|.+|+|....+++.-|+.+++-+....+.||+.
T Consensus         2 kvVIIG~G~AG~saA~~l~~~~~~~~I~v~e~~~~~~y~~   41 (443)
T PRK09564          2 KIIIIGGTAAGTSAAAKAKRLNKELEIVVYEKTDIISFGA   41 (443)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC
T ss_conf             6999996099999999998149399999994889877765


No 56 
>PRK01506 consensus
Probab=68.89  E-value=9.5  Score=18.67  Aligned_cols=205  Identities=14%  Similarity=0.070  Sum_probs=101.0

Q ss_pred             EEEEECCCCH-------HHHHHHHHHHCCCCCEEEEECCCCCCCCCC-----CHHHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf             0798779105-------899999999689998999941578989898-----9899999999999998621698489971
Q gi|254780905|r   16 ILIFDSGIGG-------LIVLQKMRFLMPEYHFIYVADDVGFPYGNW-----EDHALKKRLMFLFSDILDKYQPVLSVIA   83 (271)
Q Consensus        16 IgifDSGiGG-------Ltv~~~l~~~lP~~~~iY~~D~~~~PYG~k-----s~~~I~~~~~~~~~~ll~k~~~~~IVIA   83 (271)
                      +-|+-|.-+.       |-.+-...++.-..++.-+  -=++||.-.     +.+-   .+.+.+..+++..|++-++ .
T Consensus        59 V~ivqs~~~p~nd~lmELll~i~a~r~~gA~~It~V--iPY~~YaRQDr~~~~ge~---isak~vA~ll~~~G~d~vi-t  132 (317)
T PRK01506         59 VFIIQSTSAPVNEHIMELLIMIDALKRASAKTINIV--IPYYGYARQDRKARSREP---ITAKLVANLLETAGATRVI-T  132 (317)
T ss_pred             EEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEE--CCCCCCCCCCCCCCCCCC---EEHHHHHHHHHCCCCCEEE-E
T ss_conf             899858999920899999999999887389748996--267652437643358876---1389888787415885379-9


Q ss_pred             CCCCCHHHHHHHHHHCCCCCCCCC--CHHHHHHHHHCCCCCEEEEECHHHH--CCHHHHHHHHHCCCCCEEE--ECCCCC
Q ss_conf             762026338999862577765445--4799999984078832998506773--1701689985127885797--705642
Q gi|254780905|r   84 CNTAFTLIKDELRSTFPSMAFLGA--VPAIKQAAAYTQSGLISILSTPATL--RRTYTSNLIHSYVSQCHIH--LVSSMI  157 (271)
Q Consensus        84 CNTasa~~~~~l~~~~~~ipiigi--i~~~~~a~~~~~~~~VgiLAT~~Ti--~s~~y~~~i~~~~~~~~v~--~~~~~~  157 (271)
                      .+- |  . +.++.-| ++|+-++  .|.+..........+.-|++....-  +...|.+.+.   .+..+.  ....+.
T Consensus       133 vDl-H--~-~~i~~fF-~ip~~~l~~~~~l~~~~~~~~~~~~vVVsPD~Ga~kra~~~a~~L~---~~~~~~~K~R~~~~  204 (317)
T PRK01506        133 LDL-H--A-PQIQGFF-DIPIDHLMGVPILSDYFETKGLKDIVIVSPDHGGVTRARKMADRLK---APIAIIDKRRPRPN  204 (317)
T ss_pred             ECC-C--C-HHHHHCC-CCCCCEEEECHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHCC---CCEEEEEEECCCCC
T ss_conf             627-8--4-8775016-9984315850888889985488774899049248999999999729---96688986417998


Q ss_pred             HHHHHH--HHHHCCC--CCHHHH--HHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHCC-----------------
Q ss_conf             257877--6642677--697999--99999984654105887899805635889999998648-----------------
Q gi|254780905|r  158 LASRVE--EYACGIK--IKEDEI--KKEIEGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSP-----------------  214 (271)
Q Consensus       158 lv~~iE--~~~~~~~--~~~~~~--~~~l~~~l~~~~~~~~D~iILGCTHyPll~~~i~~~~~-----------------  214 (271)
                      -+....  ....+..  +-++.+  -..+-.....++.+|+..+...|||--|..+..+++..                 
T Consensus       205 ~v~~~~~~gdV~Gr~vIIVDDiI~TGgTl~~aa~~Lk~~GA~~V~~~~THglfs~~A~~rl~~s~i~~iv~TnTip~p~~  284 (317)
T PRK01506        205 VAEVMNIIGNIEGKTAILIDDIIDTAGTITLAANALVENGASEVYACCTHPVLSGPAIERIQNSKIKELVVTNSIVLPEE  284 (317)
T ss_pred             EEEEECCCCCCCCCEEEEECCHHHCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHCCCCCEEEEECCCCCCHH
T ss_conf             04630245655796278751322135059999999986599758999977006817999986189988999388448612


Q ss_pred             ---CCCEEEECHHHHHHHHHHHH
Q ss_conf             ---99789828589999999998
Q gi|254780905|r  215 ---WPVDWLDNSDSIARRARCLL  234 (271)
Q Consensus       215 ---~~v~iIDpa~~va~~~~~~L  234 (271)
                         ++++++|-+.-+|+.+.++-
T Consensus       285 ~~~~kl~vlsva~llAeaI~ri~  307 (317)
T PRK01506        285 KKIDKVHELSVAPLIAEAIIRVY  307 (317)
T ss_pred             HCCCCCEEEEHHHHHHHHHHHHH
T ss_conf             33798399884999999999986


No 57 
>KOG1387 consensus
Probab=68.74  E-value=8.2  Score=19.08  Aligned_cols=66  Identities=21%  Similarity=0.222  Sum_probs=47.3

Q ss_pred             CCCCCEEEEE----CCCCHHHH----HHHHHHHCCCCC-EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf             3488707987----79105899----999999689998-99994157898989898999999999999986216984899
Q gi|254780905|r   11 KLQNSILIFD----SGIGGLIV----LQKMRFLMPEYH-FIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSV   81 (271)
Q Consensus        11 ~~~~~IgifD----SGiGGLtv----~~~l~~~lP~~~-~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IV   81 (271)
                      +.-...|+|-    -|=||=-|    .+..++..|+.. +||-||.      +-|+++|...+.+..+--++..++.+|-
T Consensus        41 k~~ktvgfFHPYCNAGGGGErVLW~Avr~~q~k~~n~~~viYsGD~------n~t~~~IL~k~k~~F~idlDs~nI~Fi~  114 (465)
T KOG1387          41 KNVKTVGFFHPYCNAGGGGERVLWKAVRITQRKFPNNVIVIYSGDF------NVTPENILNKVKNKFDIDLDSDNIFFIY  114 (465)
T ss_pred             HHCEEEEEECCCCCCCCCCCEEHHHHHHHHHHHCCCCEEEEEECCC------CCCHHHHHHHHHHHCCCEECCCCEEEEE
T ss_conf             4065788743654589984032369999999767884699982788------8899999999887537102666469999


Q ss_pred             E
Q ss_conf             7
Q gi|254780905|r   82 I   82 (271)
Q Consensus        82 I   82 (271)
                      +
T Consensus       115 L  115 (465)
T KOG1387         115 L  115 (465)
T ss_pred             E
T ss_conf             7


No 58 
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=68.62  E-value=9.6  Score=18.64  Aligned_cols=107  Identities=13%  Similarity=0.126  Sum_probs=54.2

Q ss_pred             CCEEEE-ECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHH
Q ss_conf             870798-7791058999999996899989999415789898989899999999999998621698489971762026338
Q gi|254780905|r   14 NSILIF-DSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIK   92 (271)
Q Consensus        14 ~~Igif-DSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~   92 (271)
                      ..+||| +||+|==+.+..|.+.. +.+++-++     --|+|..| +.++.    +..+...+.+--|+-|||+..-..
T Consensus       157 QRigIf~gsGvGKs~Ll~~iar~~-~adv~V~~-----liGeR~rE-v~efi----e~~l~~~~l~rsvvv~atsd~p~~  225 (435)
T PRK07721        157 QRVGIFAGSGVGKSTLMGMIARQT-SADLNVIA-----LIGERGRE-VREFI----ERDLGEEGLKRSIVVVATSDQPAL  225 (435)
T ss_pred             CEEEECCCCCCCHHHHHHHHHHHH-CCCEEEEE-----EECCCHHH-HHHHH----HHHHCCCCCCCEEEEEECCCCCHH
T ss_conf             541002689987899999998874-48825899-----93320289-99999----975221555323999943889999


Q ss_pred             HHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEECHHHHCCHHHHH
Q ss_conf             99986257776544547999999840788329985067731701689
Q gi|254780905|r   93 DELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPATLRRTYTSN  139 (271)
Q Consensus        93 ~~l~~~~~~ipiigii~~~~~a~~~~~~~~VgiLAT~~Ti~s~~y~~  139 (271)
                      ..++.     |..++  ++.+.-. .+.++|.++-+.-|--...+.+
T Consensus       226 ~R~~a-----~~~a~--tiAEyfr-d~G~~VLl~~Dsltr~A~A~RE  264 (435)
T PRK07721        226 MRIKG-----AYTAT--AIAEYFR-DKGQNVMLMMDSVTRVAMAQRE  264 (435)
T ss_pred             HHHHH-----HHHHH--HHHHHHH-HCCCCEEEECCCHHHHHHHHHH
T ss_conf             99999-----99988--8999999-6799789951638899999999


No 59 
>TIGR01188 drrA daunorubicin resistance ABC transporter, ATP-binding protein; InterPro: IPR005894   ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs.   ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain .    The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , .   The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , .   Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1).     This family contains the daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. In other words it functions as an ATP dependent antiporter. .
Probab=68.50  E-value=3.4  Score=21.61  Aligned_cols=58  Identities=17%  Similarity=0.167  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHH
Q ss_conf             799999999984654105887899805635889999998648997898285899999999986
Q gi|254780905|r  173 EDEIKKEIEGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSPWPVDWLDNSDSIARRARCLLP  235 (271)
Q Consensus       173 ~~~~~~~l~~~l~~~~~~~~D~iILGCTHyPll~~~i~~~~~~~v~iIDpa~~va~~~~~~L~  235 (271)
                      +...+..++.+...++... +.=||=||||  +.+.  +.|.+.|.|||-+..+|.-.-.-|.
T Consensus       160 DP~tR~~iWd~i~~lk~~~-g~TilLTThY--meEA--d~L~DriaiId~G~iiA~gt~~eLK  217 (343)
T TIGR01188       160 DPRTRRAIWDYIEALKKEE-GVTILLTTHY--MEEA--DKLCDRIAIIDHGRIIAEGTPEELK  217 (343)
T ss_pred             CHHHHHHHHHHHHHHHHCC-CCEEEEECCC--HHHH--HHHCCEEEEEECCEEEEECCCCHHH
T ss_conf             8866999999999987407-9699974378--6999--8236887886164899866920246


No 60 
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=67.99  E-value=9.3  Score=18.72  Aligned_cols=47  Identities=15%  Similarity=0.399  Sum_probs=35.4

Q ss_pred             EEEEECCCCHHHHHHHHHHH-CCCCCEEEEECCCCCCC---------CCCCHHHHHH
Q ss_conf             07987791058999999996-89998999941578989---------8989899999
Q gi|254780905|r   16 ILIFDSGIGGLIVLQKMRFL-MPEYHFIYVADDVGFPY---------GNWEDHALKK   62 (271)
Q Consensus        16 IgifDSGiGGLtv~~~l~~~-lP~~~~iY~~D~~~~PY---------G~ks~~~I~~   62 (271)
                      |.|.=.|.+|++++++|+++ .|+.++.-+-.+.+++|         |..+.+++.-
T Consensus         2 iVIvGgG~aG~~~a~~L~~~~~~~~~ItLId~~~~~~y~~~lp~~~~g~~~~~~i~~   58 (364)
T TIGR03169         2 LVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRI   58 (364)
T ss_pred             EEEECCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCEECCHHHHHHHCCCCHHHEEC
T ss_conf             999996099999999970417899839999998865162516999740477999221


No 61 
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=67.53  E-value=10  Score=18.49  Aligned_cols=74  Identities=14%  Similarity=0.154  Sum_probs=36.4

Q ss_pred             HHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCC--C--HHHHHHHHHCCCCCEEEEECHHHHCC-HHHHHH
Q ss_conf             999998621698489971762026338999862577765445--4--79999998407883299850677317-016899
Q gi|254780905|r   66 FLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGA--V--PAIKQAAAYTQSGLISILSTPATLRR-TYTSNL  140 (271)
Q Consensus        66 ~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~~~~~ipiigi--i--~~~~~a~~~~~~~~VgiLAT~~Ti~s-~~y~~~  140 (271)
                      +.+..+-+ .+.++||+---+.++.......++||+ .+++|  -  ..+-.|+-..-.++.-...|-+-.-| ..|++.
T Consensus        15 ~~L~~l~~-~~~diVvl~ADl~~St~~~~f~~~fPd-R~~NvGIaEQ~mvg~AAGLA~~Gk~Pfv~tfa~F~s~Ra~EQi   92 (312)
T COG3958          15 ETLAELGR-KNSDIVVLDADLSSSTKTGYFAKEFPD-RFFNVGIAEQDMVGTAAGLALAGKKPFVSTFAAFLSRRAWEQI   92 (312)
T ss_pred             HHHHHHHH-CCCCEEEEECCCCCCCCHHHHHHHCCH-HHEECCHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHH
T ss_conf             99999873-389979996453134110578886754-5144246788899999888744887436415899877799999


Q ss_pred             H
Q ss_conf             8
Q gi|254780905|r  141 I  141 (271)
Q Consensus       141 i  141 (271)
                      .
T Consensus        93 r   93 (312)
T COG3958          93 R   93 (312)
T ss_pred             H
T ss_conf             9


No 62 
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=67.29  E-value=10  Score=18.46  Aligned_cols=114  Identities=12%  Similarity=0.129  Sum_probs=57.5

Q ss_pred             CCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHH-------HHHHHH
Q ss_conf             9855433446348870798779105899999999689998999941578989898989999999999-------999862
Q gi|254780905|r    1 MKIDNYPCEKKLQNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFL-------FSDILD   73 (271)
Q Consensus         1 ~~~~~~~~~~~~~~~IgifDSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~-------~~~ll~   73 (271)
                      |++..+.     .+.|+|+--|.=|+++++.|.++-+. ..+..-|+.-      +..+........       -...+.
T Consensus         1 m~~~~~~-----gkkv~V~GlG~sG~aaa~~L~~~g~~-~~v~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~   68 (468)
T PRK04690          1 MRISQLE-----GKRVALWGWGREGRAAYRALRAQLPA-QPLTVFCNAE------EVREVGALADAALLVETEASAQRLA   68 (468)
T ss_pred             CCHHHCC-----CCEEEEEEECHHHHHHHHHHHHCCCE-EEEEECCCCC------CCHHHHHHCCCCCEEECCCCHHHHH
T ss_conf             9764439-----79799983478799999999966990-4999728832------4646676204575674677855761


Q ss_pred             CCCCCEEEEECCCC-CHHHHHHHHHHCCCCCCCCCCHHH-HH--HHHHCCCCCEEEEECHH
Q ss_conf             16984899717620-263389998625777654454799-99--99840788329985067
Q gi|254780905|r   74 KYQPVLSVIACNTA-FTLIKDELRSTFPSMAFLGAVPAI-KQ--AAAYTQSGLISILSTPA  130 (271)
Q Consensus        74 k~~~~~IVIACNTa-sa~~~~~l~~~~~~ipiigii~~~-~~--a~~~~~~~~VgiLAT~~  130 (271)
                        .+|+||+.=--. +.-.+...+++  ++||+|-++-. ..  .......+-|||=||.|
T Consensus        69 --~~d~vv~SPGi~~~~p~~~~a~~~--~i~i~~eiel~~~~~~~~~~~~~k~IaVTGTNG  125 (468)
T PRK04690         69 --AFEVVVKSPGISPYRPEALAAAAQ--GTPFIGGTALWFAEHAQPDGSVPGAVCVTGTKG  125 (468)
T ss_pred             --CCCEEEECCCCCCCCHHHHHHHHC--CCCEEEHHHHHHHHHHCCCCCCCCEEEEECCCC
T ss_conf             --488999899579868999999987--994886899999875311256787899969985


No 63 
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=67.20  E-value=10  Score=18.45  Aligned_cols=94  Identities=12%  Similarity=0.032  Sum_probs=38.3

Q ss_pred             CCCCCCEEEEECCCC-----HHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf             634887079877910-----589999999968999899994157898989898999999999999986216984899717
Q gi|254780905|r   10 KKLQNSILIFDSGIG-----GLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIAC   84 (271)
Q Consensus        10 ~~~~~~IgifDSGiG-----GLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIAC   84 (271)
                      ..|..-+...|.|.-     .+..+++-.+..+..+|+.-.-- ..|+|.-   -..+.+.++.++.-+-...|.||+||
T Consensus       113 ~~~G~~~~~~~~~~d~~~~~~~~~~~e~~~~~g~kpyvIp~gG-~~~~g~l---Gyv~~a~Ei~~Q~~~~~~fD~vVva~  188 (323)
T COG2515         113 KLMGAEVRAVDAGTDIGINASAEELAEEVRKQGGKPYVIPEGG-SSPLGAL---GYVRLALEIAEQAEQLLKFDSVVVAP  188 (323)
T ss_pred             HHCCCEEEEECCCCCHHHCHHHHHHHHHHHHCCCCCCEECCCC-CCCCCCC---CHHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf             3247657871588886433106789999996179983722677-6855441---28889999999996313777799967


Q ss_pred             CCCCHHHHHHHHHH--CCCCCCCCC
Q ss_conf             62026338999862--577765445
Q gi|254780905|r   85 NTAFTLIKDELRST--FPSMAFLGA  107 (271)
Q Consensus        85 NTasa~~~~~l~~~--~~~ipiigi  107 (271)
                      -|++++|.-.+.-.  -+++++||+
T Consensus       189 gs~gT~AGl~~g~~~~~~~~~ViG~  213 (323)
T COG2515         189 GSGGTHAGLLVGLAQLGPDVEVIGI  213 (323)
T ss_pred             CCCCHHHHHHHHHHHCCCCCCEEEE
T ss_conf             8851089999876510688846887


No 64 
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta).  SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane.  Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP.  SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane.  The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane.  SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon.  High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=67.09  E-value=10  Score=18.44  Aligned_cols=67  Identities=19%  Similarity=0.282  Sum_probs=38.7

Q ss_pred             CEEEEECCCCHHHHHH-HHHHHCCCC--CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHC-CCCCEEEEECCCC
Q ss_conf             7079877910589999-999968999--89999415789898989899999999999998621-6984899717620
Q gi|254780905|r   15 SILIFDSGIGGLIVLQ-KMRFLMPEY--HFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDK-YQPVLSVIACNTA   87 (271)
Q Consensus        15 ~IgifDSGiGGLtv~~-~l~~~lP~~--~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k-~~~~~IVIACNTa   87 (271)
                      .+-+.|  ++|=.=+| ++.+.+++.  -+||+-|.+-++   ++-.+.-++...++.....+ .++. |.||||=.
T Consensus        49 ~~~lvD--~PGH~klR~~~~~~~~~~~~gIVfvVDs~~~~---~~l~~~Ae~Ly~iL~~~~~~~~~iP-vLIacNKq  119 (203)
T cd04105          49 KFRLVD--VPGHPKLRDKLLETLKNSAKGIVFVVDSATFQ---KNLKDVAEFLYDILTDLEKVKNKIP-VLIACNKQ  119 (203)
T ss_pred             EEEEEE--CCCCHHHHHHHHHHHHHCCCEEEEEEECCCCC---HHHHHHHHHHHHHHHHHHHCCCCCC-EEEEEECC
T ss_conf             799998--79968899999999875498999999688751---1199999999999862664368998-89998661


No 65 
>PRK05279 N-acetylglutamate synthase; Validated
Probab=66.91  E-value=10  Score=18.45  Aligned_cols=81  Identities=9%  Similarity=0.121  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHHHCCCCCEEEECCCC-HHHHHHHHHHHCCCCCEEEECHH---HHHHHHHHHHHHCCCCCCCCCCCEEEEE
Q ss_conf             9999998465410588789980563-58899999986489978982858---9999999998642733457788779996
Q gi|254780905|r  177 KKEIEGCFIEKEGKRTDVIVLACTH-YPLIVHVFRQLSPWPVDWLDNSD---SIARRARCLLPRINTHQTRVFDDHALFL  252 (271)
Q Consensus       177 ~~~l~~~l~~~~~~~~D~iILGCTH-yPll~~~i~~~~~~~v~iIDpa~---~va~~~~~~L~~~~~~~~~~~~~~~f~~  252 (271)
                      ++.|+.-+..+.--..|..|.||-- |||-.+...++   .+-.|+|.-   +..+++.+.+++...  .....+.-.+|
T Consensus       326 re~le~eI~~f~V~e~Dg~iigCaALy~~~~~~~aEl---aclav~~~y~~~g~G~~Ll~~~e~~A~--~~g~~~lF~LT  400 (441)
T PRK05279        326 REQLEREIDQFTVIERDGVIIGCAALYPFPEEKMGEM---ACLAVHPDYRGSGRGERLLKRIEQRAR--QQGLSRLFVLT  400 (441)
T ss_pred             HHHHHHHHCCEEEEEECCCEEEEEEEEECCCCCEEEE---EEEEECHHHCCCCHHHHHHHHHHHHHH--HCCCCEEEEEE
T ss_conf             9999976463699998895999996000387780688---888987866189879999999999999--86998799996


Q ss_pred             CCCHHHHHHH
Q ss_conf             6997999999
Q gi|254780905|r  253 SGKPDIAMRR  262 (271)
Q Consensus       253 T~~~~~~~~~  262 (271)
                      |...++|.++
T Consensus       401 Tqt~hwF~e~  410 (441)
T PRK05279        401 TRTAHWFLER  410 (441)
T ss_pred             CCCHHHHHHC
T ss_conf             5638889975


No 66 
>pfam09949 DUF2183 Uncharacterized conserved protein (DUF2183). This domain, found in various hypothetical bacterial proteins, has no known function.
Probab=66.14  E-value=11  Score=18.31  Aligned_cols=56  Identities=16%  Similarity=0.248  Sum_probs=36.1

Q ss_pred             EEEEECCCCH--HHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf             0798779105--899999999689998999941578989898989999999999999862169848997
Q gi|254780905|r   16 ILIFDSGIGG--LIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVI   82 (271)
Q Consensus        16 IgifDSGiGG--Ltv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVI   82 (271)
                      .+.|-||-++  +..+++|.+.+|+..+|.+||+     |++.. ||.   .+++..+=  ..+.+|.|
T Consensus        40 ~~~~~~~~~~hK~~~i~~il~~fP~~kfiLiGDs-----gq~Dp-eiY---~~ia~~~P--~rI~aI~I   97 (100)
T pfam09949        40 LGFFRSGAQSHKRDAIERILRDFPDRKFILIGDS-----GQHDP-EIY---AEIAREFP--GRILAIYI   97 (100)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC-----CCCCH-HHH---HHHHHHCC--CCEEEEEE
T ss_conf             6552687425639999999997889708995688-----77699-999---99999797--55899998


No 67 
>cd06343 PBP1_ABC_ligand_binding_like_8 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=65.69  E-value=11  Score=18.26  Aligned_cols=56  Identities=16%  Similarity=0.043  Sum_probs=32.9

Q ss_pred             CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHH-HHHHHHCCCCCCCCC
Q ss_conf             989999415789898989899999999999998621698489971762026338-999862577765445
Q gi|254780905|r   39 YHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIK-DELRSTFPSMAFLGA  107 (271)
Q Consensus        39 ~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~-~~l~~~~~~ipiigi  107 (271)
                      .+++. .|+..-|          ....+..++|+++.++.+|+=+++|+++.+. +.+++ . .+|+++.
T Consensus        48 ielv~-~Dd~~~p----------~~a~~~~~~Li~~d~V~ai~G~~~S~~~~a~~~~~~~-~-~ip~i~~  104 (362)
T cd06343          48 IELIV-EDDGYSP----------PKTVEQTRKLVESDEVFAMVGGLGTPTNLAVQKYLNE-K-KVPQLFP  104 (362)
T ss_pred             EEEEE-ECCCCCH----------HHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHH-H-CCEEEEE
T ss_conf             89999-5599997----------9999999998840871386257687888986278886-2-7269974


No 68 
>PRK04554 consensus
Probab=65.65  E-value=11  Score=18.25  Aligned_cols=193  Identities=8%  Similarity=0.068  Sum_probs=96.2

Q ss_pred             HHHHHHHCCCCCEEEEECCCCCCCCCCCHHHH--H-HHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCC
Q ss_conf             99999968999899994157898989898999--9-99999999986216984899717620263389998625777654
Q gi|254780905|r   29 LQKMRFLMPEYHFIYVADDVGFPYGNWEDHAL--K-KRLMFLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFL  105 (271)
Q Consensus        29 ~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I--~-~~~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~~~~~ipii  105 (271)
                      ..+++ +.-..++.-+  -=++||.-..+..-  + -.+.+.+..+++..|++-+ +..+= |+   +.++.-| ++|+-
T Consensus        77 idA~r-ra~A~~It~V--iPY~~YaRQDr~~~~gr~pIsak~vA~lL~~~G~d~v-itvDl-H~---~qiqgfF-~ipvd  147 (327)
T PRK04554         77 ADALK-RASAGRITTA--IPYFGYARQDRRPRSVRVPISAKLVANMLYSAGIDRV-LTVDL-HA---DQIQGFF-DIPVD  147 (327)
T ss_pred             HHHHH-HCCCCCEEEE--ECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCC-EEECC-CH---HHHHCCC-CCCCC
T ss_conf             99998-7288727999--4465643367665788675129999855762598850-47626-84---8873436-89702


Q ss_pred             CCC--HHHHHHHHHCCCCCEEEEECHHHH--CCHHHHHHHHHCCCCCEEEE--CCCCC------HHHHHHHHHHCCCCCH
Q ss_conf             454--799999984078832998506773--17016899851278857977--05642------2578776642677697
Q gi|254780905|r  106 GAV--PAIKQAAAYTQSGLISILSTPATL--RRTYTSNLIHSYVSQCHIHL--VSSMI------LASRVEEYACGIKIKE  173 (271)
Q Consensus       106 gii--~~~~~a~~~~~~~~VgiLAT~~Ti--~s~~y~~~i~~~~~~~~v~~--~~~~~------lv~~iE~~~~~~~~~~  173 (271)
                      ++-  |.........+..+.-|.+-...-  +...+.+.+   +.+..+..  ...+.      ++..++.. ... +-+
T Consensus       148 ~l~a~~~l~~~i~~~~~~~~vvVsPD~G~~~ra~~~A~~L---~~~~a~~~K~R~~~~~~~~~~~vgdV~Gk-~~I-IVD  222 (327)
T PRK04554        148 NIYATPILLNDIKQQRIENLTVVSPDIGGVVRARAVAKSL---NADLAIIDKRRPKANVAEVMNIIGDIQGR-TCL-IVD  222 (327)
T ss_pred             CCCCHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHC---CCCEEEEEEECCCCCCEEEECCCCCCCCC-EEE-ECC
T ss_conf             1112199999998607787289837953899999999756---88779999644899822651255641222-367-204


Q ss_pred             HHH--HHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHCC---------------------CCCEEEECHHHHHHHH
Q ss_conf             999--99999984654105887899805635889999998648---------------------9978982858999999
Q gi|254780905|r  174 DEI--KKEIEGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSP---------------------WPVDWLDNSDSIARRA  230 (271)
Q Consensus       174 ~~~--~~~l~~~l~~~~~~~~D~iILGCTHyPll~~~i~~~~~---------------------~~v~iIDpa~~va~~~  230 (271)
                      +.+  -..+......++.+|+..+..-|||--|-.+..+++..                     ++++++|=+..+|+.+
T Consensus       223 DiIdTGgTl~~aa~~Lk~~GA~~V~~~aTHglfs~~A~~rl~~s~i~~ivvTnTIp~~~~~~~~~Ki~vlsva~llAeaI  302 (327)
T PRK04554        223 DMIDTANTLCKAAVALKERGAERVLAYASHAVFSGEAVSRIASSEIDQVVVTDTIPLSEAAKNCDRIRQVTIAGLLAETV  302 (327)
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHCCCCEEEEECCCCCCHHHCCCCCEEEEEHHHHHHHHH
T ss_conf             32135067999999999769987899987916063399999718997899918976874562589809988899999999


Q ss_pred             HHHHH
Q ss_conf             99986
Q gi|254780905|r  231 RCLLP  235 (271)
Q Consensus       231 ~~~L~  235 (271)
                      .++-.
T Consensus       303 ~rih~  307 (327)
T PRK04554        303 RRISN  307 (327)
T ss_pred             HHHHC
T ss_conf             99867


No 69 
>pfam04551 GcpE GcpE protein. In a variety of organisms, including plants and several eubacteria, isoprenoids are synthesized by the mevalonate-independent 2-C-methyl-D-erythritol 4-phosphate (MEP) pathway. Although different enzymes of this pathway have been described, the terminal biosynthetic steps of the MEP pathway have not been fully elucidated. GcpE gene of Escherichia coli is involved in this pathway.
Probab=64.37  E-value=12  Score=18.10  Aligned_cols=198  Identities=13%  Similarity=0.176  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCEEEEECCCC-CHHHHHHHHHHCCCCCCCCCCH-HHHHHHHHCCCCCEEEEECHHHHCC-
Q ss_conf             999999999999986216984899717620-2633899986257776544547-9999998407883299850677317-
Q gi|254780905|r   58 HALKKRLMFLFSDILDKYQPVLSVIACNTA-FTLIKDELRSTFPSMAFLGAVP-AIKQAAAYTQSGLISILSTPATLRR-  134 (271)
Q Consensus        58 ~~I~~~~~~~~~~ll~k~~~~~IVIACNTa-sa~~~~~l~~~~~~ipiigii~-~~~~a~~~~~~~~VgiLAT~~Ti~s-  134 (271)
                      .++.. +.+.+..| ++.||++|=+|||+. ++.++..++++. ++|++.-+- --+.|....+.+-=.+=--|+-+.+ 
T Consensus        28 ~Dv~a-tv~Qi~~L-~~aGceiVRvavp~~~~a~al~~I~~~~-~iPlVADIHF~~~lAl~a~~~g~~kiRINPGNig~~  104 (345)
T pfam04551        28 RDVEA-TVAQIKRL-EEAGCDIVRVAVPDMEAAEALKEIKKQS-PIPLVADIHFDYRLALEAIEAGVDKIRINPGNIGRR  104 (345)
T ss_pred             CCHHH-HHHHHHHH-HHCCCCEEEECCCCHHHHHHHHHHHHHC-CCCCEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCH
T ss_conf             20899-99999999-9859998998879999998499999858-997140042489999999986220156799774867


Q ss_pred             HHHHHHH---HHCCCCCEEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCC--HHHHHH--
Q ss_conf             0168998---512788579770564225787766426776979999999998465410588789980563--588999--
Q gi|254780905|r  135 TYTSNLI---HSYVSQCHIHLVSSMILASRVEEYACGIKIKEDEIKKEIEGCFIEKEGKRTDVIVLACTH--YPLIVH--  207 (271)
Q Consensus       135 ~~y~~~i---~~~~~~~~v~~~~~~~lv~~iE~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~iILGCTH--yPll~~--  207 (271)
                      ..+...+   .+++..+.|-....+.--.+.+..  +....+..+...++. +.-+...+.+-+++.|-.  .+...+  
T Consensus       105 ~~~~~vv~~ak~~~~pIRIGvN~GSL~~~~l~ky--~~~~~~amveSAl~~-~~~~e~~~f~~iviS~KsS~v~~~i~ay  181 (345)
T pfam04551       105 EKVKEVVEAAKERGIPIRIGVNSGSLEKRILEKY--GGPTPEAMVESALEH-VRILEELGFDDIVISLKASDVLVMIEAY  181 (345)
T ss_pred             HHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHC--CCCCHHHHHHHHHHH-HHHHHHCCCCCEEEEEECCCHHHHHHHH
T ss_conf             8789999999983997898326777688999870--898789999999999-9999878998689999718688999999


Q ss_pred             -HHHHHCCCCCE------------EEECHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCHHH---HHHHHHHHCCCCC
Q ss_conf             -99986489978------------9828589999999998642733457788779996699799---9999998568889
Q gi|254780905|r  208 -VFRQLSPWPVD------------WLDNSDSIARRARCLLPRINTHQTRVFDDHALFLSGKPDI---AMRRLMQGFGLKS  271 (271)
Q Consensus       208 -~i~~~~~~~v~------------iIDpa~~va~~~~~~L~~~~~~~~~~~~~~~f~~T~~~~~---~~~~~~~~~G~~~  271 (271)
                       .|.+..+.+..            .|-|+-++.    .      ++...-..+.+.=.|++|..   ..+.+++.+|+|.
T Consensus       182 r~la~~~dyPLHLGvTEAG~~~~G~IKSs~gig----~------LL~~GIGDTIRVSLt~dP~~EV~v~~~IL~sl~lR~  251 (345)
T pfam04551       182 RLLAEKTDYPLHLGVTEAGTGEDGTIKSAIGIG----A------LLAEGIGDTIRVSLTEDPVEEVKVAFEILQSLGLRK  251 (345)
T ss_pred             HHHHHHCCCCCEECCCCCCCCCCCEEHHHHHHH----H------HHHCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCC
T ss_conf             999975798834477477799881155898899----9------997188653999678995478999999999728775


No 70 
>pfam01118 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. This Pfam entry contains the following members: N-acetyl-glutamine semialdehyde dehydrogenase (AgrC) Aspartate-semialdehyde dehydrogenase
Probab=64.32  E-value=8.9  Score=18.84  Aligned_cols=32  Identities=16%  Similarity=0.274  Sum_probs=22.9

Q ss_pred             EEEEE-CCCCHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf             07987-7910589999999968999899994157
Q gi|254780905|r   16 ILIFD-SGIGGLIVLQKMRFLMPEYHFIYVADDV   48 (271)
Q Consensus        16 IgifD-SGiGGLtv~~~l~~~lP~~~~iY~~D~~   48 (271)
                      |||.- ||..|.-.++-|.+ .|+.++.|+..+.
T Consensus         2 vaIiGatGyvG~eLirlL~~-hp~~~i~~l~~s~   34 (121)
T pfam01118         2 VAIVGATGYVGQELLRLLAE-HPPLELVALVASS   34 (121)
T ss_pred             EEEECCCHHHHHHHHHHHHC-CCCCCCEEEEEEC
T ss_conf             99989361999999999971-8875513788505


No 71 
>cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example.
Probab=63.36  E-value=12  Score=17.98  Aligned_cols=60  Identities=17%  Similarity=0.221  Sum_probs=31.2

Q ss_pred             CCCCCE-EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf             899989-99941578989898989999999999999862169848997176202633899986257776544
Q gi|254780905|r   36 MPEYHF-IYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLG  106 (271)
Q Consensus        36 lP~~~~-iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~~~~~ipiig  106 (271)
                      +|+..+ +.+.|+.--|          ........+++++.++.+|+=++.+..+.+...+-+.+ ++|+|+
T Consensus        35 l~~~~l~l~~~D~~~~~----------~~a~~~a~~li~~~~v~aiiGp~~S~~~~~va~v~~~~-~ip~is   95 (350)
T cd06366          35 LPGYRLVLHVRDSKCDP----------VQAASAALDLLENKPVVAIIGPQCSSVAEFVAEVANEW-NVPVLS   95 (350)
T ss_pred             CCCCEEEEEEEECCCCH----------HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEC
T ss_conf             99977999998689997----------99999999998517967999356448889788876513-712503


No 72 
>cd06337 PBP1_ABC_ligand_binding_like_4 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=62.04  E-value=13  Score=17.82  Aligned_cols=55  Identities=11%  Similarity=0.061  Sum_probs=36.3

Q ss_pred             CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf             8999941578989898989999999999999862169848997176202633899986257776544
Q gi|254780905|r   40 HFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLG  106 (271)
Q Consensus        40 ~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~~~~~ipiig  106 (271)
                      ++|+ .|++.-|          +......++|+++.++++|+-++.+..+.+...+-++. .+|.|.
T Consensus        44 elv~-~Dd~~~p----------~~av~~a~kLi~~d~V~~i~G~~~S~~~~a~~~~~~~~-~vp~i~   98 (357)
T cd06337          44 EIIV-RDSQSNP----------NRAGLVAQELILTDKVDLLLAGGTPDTTNPVSDQCEAN-GVPCIS   98 (357)
T ss_pred             EEEE-ECCCCCH----------HHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHH-CCCEEE
T ss_conf             9998-3599898----------99999999998657937999567337589899999983-997786


No 73 
>cd06328 PBP1_SBP_like_2 Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=61.77  E-value=13  Score=17.79  Aligned_cols=56  Identities=14%  Similarity=0.121  Sum_probs=35.2

Q ss_pred             CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf             98999941578989898989999999999999862169848997176202633899986257776544
Q gi|254780905|r   39 YHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLG  106 (271)
Q Consensus        39 ~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~~~~~ipiig  106 (271)
                      ..+++ .|+..-|          +.+...+++|+++.++++|+=++.|.++.+...+-++. .+|++.
T Consensus        42 ielv~-~Dd~~~p----------~~a~~~a~~Li~~d~V~aviG~~~S~~~~a~~~~~~~~-~vp~i~   97 (333)
T cd06328          42 IEVIV-KDDAGNP----------EVAVSLARELIGDDGVDILVGSTSSGVALAVLPVAEEN-KKILIV   97 (333)
T ss_pred             EEEEE-ECCCCCH----------HHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHH-CCCEEE
T ss_conf             89998-5799998----------99999999999658974997897867889879999982-472441


No 74 
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=61.03  E-value=13  Score=17.70  Aligned_cols=191  Identities=11%  Similarity=0.085  Sum_probs=94.6

Q ss_pred             HHHHHHHHCCCCCEEEEECCCCCCCCC-----CCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf             999999968999899994157898989-----898999999999999986216984899717620263389998625777
Q gi|254780905|r   28 VLQKMRFLMPEYHFIYVADDVGFPYGN-----WEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSM  102 (271)
Q Consensus        28 v~~~l~~~lP~~~~iY~~D~~~~PYG~-----ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~~~~~i  102 (271)
                      ...+++ +.-..++.-+  -=++||.-     ++.+-|   +.+.+..+++..|++-| +..+ .|+   +.++.-| ++
T Consensus        70 ~i~A~r-~a~A~~It~V--iPY~~Y~RQDr~~~~re~i---sak~va~ll~~~G~d~v-it~D-lH~---~qi~gfF-~i  137 (309)
T PRK01259         70 MIDALR-RASAGRITAV--IPYFGYARQDRKASARVPI---TAKLVANLLSSAGADRV-LTVD-LHA---DQIQGFF-DI  137 (309)
T ss_pred             HHHHHH-HCCCCCEEEE--CCCCCCCCCCCCCCCCCCE---EHHHHHHHHHHCCCCEE-EEEE-CCH---HHHHHHC-CC
T ss_conf             999998-7488717997--2466503687777999867---59999999852378738-9981-676---7775424-89


Q ss_pred             CCCCCC--HHHHHHHHHCCCCCEEEEECHH--HHCCHHHHHHHHHCCCCCEEEE--CCCCCHHHHHH--HHHHCCC--CC
Q ss_conf             654454--7999999840788329985067--7317016899851278857977--05642257877--6642677--69
Q gi|254780905|r  103 AFLGAV--PAIKQAAAYTQSGLISILSTPA--TLRRTYTSNLIHSYVSQCHIHL--VSSMILASRVE--EYACGIK--IK  172 (271)
Q Consensus       103 piigii--~~~~~a~~~~~~~~VgiLAT~~--Ti~s~~y~~~i~~~~~~~~v~~--~~~~~lv~~iE--~~~~~~~--~~  172 (271)
                      |+-++-  |............+.-|.+...  .-+...|.+.+.   .+.-+..  .....-+...+  ....+..  +-
T Consensus       138 pvd~l~a~~~l~~~i~~~~~~~~vvVsPD~G~~~ra~~~A~~lg---~~~~~~~K~R~~~~~~~~~~~iGdV~Gk~vIIv  214 (309)
T PRK01259        138 PVDNLYGSPILLEDIKKKNLENLVVVSPDVGGVVRARALAKRLD---TDLAIIDKRRPRANVSEVMNIIGDVEGRDCILV  214 (309)
T ss_pred             CCEEEECCHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHC---CCEEEEEEECCCCCCCCCCCCCCCCCCCEEEEE
T ss_conf             71167440899999986388873899149868999999999729---987999986068883333444677566439997


Q ss_pred             HHHH--HHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHCC---------------------CCCEEEECHHHHHHH
Q ss_conf             7999--99999984654105887899805635889999998648---------------------997898285899999
Q gi|254780905|r  173 EDEI--KKEIEGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSP---------------------WPVDWLDNSDSIARR  229 (271)
Q Consensus       173 ~~~~--~~~l~~~l~~~~~~~~D~iILGCTHyPll~~~i~~~~~---------------------~~v~iIDpa~~va~~  229 (271)
                      ++.+  -..+-.....+++.|+..+...|||--|-.+..+++..                     ++++++|-+..+|+.
T Consensus       215 DDiI~TGgTl~~aa~~Lk~~GA~~V~~~~THglfs~~A~~rl~~s~i~~iv~TnTip~~~~~~~~~kl~vlsva~llAea  294 (309)
T PRK01259        215 DDMIDTGGTLCKAAEALKERGAKSVFAYATHPVLSGGAAERIANSVLDELVVTDSIPLSEEIKKCPKIRQLSLAPLLAEA  294 (309)
T ss_pred             CCHHHCCHHHHHHHHHHHHCCCCEEEEEEECHHCCHHHHHHHHHCCCCEEEEECCCCCCHHHCCCCCCEEEECHHHHHHH
T ss_conf             65343456599999999756996699998763139459999870899889981896686222458981899818999999


Q ss_pred             HHHH
Q ss_conf             9999
Q gi|254780905|r  230 ARCL  233 (271)
Q Consensus       230 ~~~~  233 (271)
                      +.+.
T Consensus       295 I~ri  298 (309)
T PRK01259        295 IRRI  298 (309)
T ss_pred             HHHH
T ss_conf             9998


No 75 
>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems.  The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts th
Probab=59.73  E-value=14  Score=17.56  Aligned_cols=155  Identities=12%  Similarity=0.063  Sum_probs=69.7

Q ss_pred             CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCC-----------
Q ss_conf             899994157898989898999999999999986216984899717620263389998625777654454-----------
Q gi|254780905|r   40 HFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGAV-----------  108 (271)
Q Consensus        40 ~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~~~~~ipiigii-----------  108 (271)
                      ++++ .|+..-|          ....+...++.++.++.+|+=+..+..+.+...+-++. ++|+|+.-           
T Consensus        42 el~~-~D~~~~~----------~~a~~~~~~l~~~~~v~~iiG~~~s~~~~a~~~~~~~~-~vp~i~~~~~~~~~~~~~~  109 (299)
T cd04509          42 ELVI-YDDQSDP----------ARALAAARRLCQQEGVDALVGPVSSGVALAVAPVAEAL-KIPLISPGATAPGLTDKKG  109 (299)
T ss_pred             EEEE-ECCCCCH----------HHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHH-CCCEECCCCCCCCCCCCCC
T ss_conf             9999-6799998----------99999999986116946997788748899999999982-8942226757830035678


Q ss_pred             --------H-------HHHHHHHHCCCCCEEEEECHHHHCCH---HHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCC
Q ss_conf             --------7-------99999984078832998506773170---16899851278857977056422578776642677
Q gi|254780905|r  109 --------P-------AIKQAAAYTQSGLISILSTPATLRRT---YTSNLIHSYVSQCHIHLVSSMILASRVEEYACGIK  170 (271)
Q Consensus       109 --------~-------~~~~a~~~~~~~~VgiLAT~~Ti~s~---~y~~~i~~~~~~~~v~~~~~~~lv~~iE~~~~~~~  170 (271)
                              |       ++...+...+.++|+++.....-...   .+++.+.+.+  .++.......             
T Consensus       110 ~~~~fr~~~~~~~~~~~~~~~~~~~~~~~vaiv~~~~~~g~~~~~~~~~~~~~~g--~~vv~~~~~~-------------  174 (299)
T cd04509         110 YPYLFRTGPSDEQQAEALADYIKEYNWKKVAILYDDDSYGRGLLEAFKAAFKKKG--GTVVGEEYYP-------------  174 (299)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCC--CEEEEEECCC-------------
T ss_conf             8746984388799999999999980897799955774067999999999999879--9799998469-------------


Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHCC----CCCEEEECHHHH
Q ss_conf             69799999999984654105887899805635889999998648----997898285899
Q gi|254780905|r  171 IKEDEIKKEIEGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSP----WPVDWLDNSDSI  226 (271)
Q Consensus       171 ~~~~~~~~~l~~~l~~~~~~~~D~iILGCTHyPll~~~i~~~~~----~~v~iIDpa~~v  226 (271)
                      ...    .-+...+..++..++|.|++++ +.+-....+++.-.    .+..++-+....
T Consensus       175 ~~~----~d~~~~i~~i~~~~~d~v~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  229 (299)
T cd04509         175 LGT----TDFTSLLQKLKAAKPDVIVLCG-SGEDAATILKQAAEAGLTGGYPILGITLGL  229 (299)
T ss_pred             CCC----CCHHHHHHHHHHCCCCEEEECC-CCHHHHHHHHHHHHCCCCCCCEEEEECCCC
T ss_conf             999----8999999999966999999907-718999999999975998897399956767


No 76 
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=59.41  E-value=14  Score=17.52  Aligned_cols=106  Identities=13%  Similarity=0.017  Sum_probs=55.6

Q ss_pred             CEEEE-ECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHH
Q ss_conf             70798-77910589999999968999899994157898989898999999999999986216984899717620263389
Q gi|254780905|r   15 SILIF-DSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIKD   93 (271)
Q Consensus        15 ~Igif-DSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~~   93 (271)
                      .+||| |||+|=-|++..+.+.....-++|..      .|+|.. |+.++..+...    ..-.+. |+-|+|++.-...
T Consensus       167 R~gIfgg~GvGKTtLl~~i~~~~~~d~vV~~l------IGeRgr-Ev~ef~e~~l~----~~l~~s-vvV~atsd~~p~~  234 (450)
T PRK06002        167 RIGIFAGSGVGKSTLLAMLARADAFDTVVVAL------VGERGR-EVREFLEDTLA----DHLSKA-VAVVATGDESPMM  234 (450)
T ss_pred             EEEECCCCCCCHHHHHHHHHHHCCCCEEEEEE------EEEEHH-HHHHHHHHHHH----CCCCEE-EEEEECCCCCCHH
T ss_conf             77742689998759999998625898799998------647489-99999998764----220005-9997058898288


Q ss_pred             HHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEECHHHHCCHHHHHH
Q ss_conf             99862577765445479999998407883299850677317016899
Q gi|254780905|r   94 ELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPATLRRTYTSNL  140 (271)
Q Consensus        94 ~l~~~~~~ipiigii~~~~~a~~~~~~~~VgiLAT~~Ti~s~~y~~~  140 (271)
                      ..+     -|..++  ++.+-. ..+.++|.++-..-|--...|.+.
T Consensus       235 r~~-----a~~~a~--aiAEyf-rd~G~~VLli~DslTr~A~A~REi  273 (450)
T PRK06002        235 RRL-----APKTAT--AIAEYF-RDRGENVLLIVDSVTRFAHAAREV  273 (450)
T ss_pred             HHH-----HHHHHH--HHHHHH-HHCCCCEEEEEECCHHHHHHHHHH
T ss_conf             765-----565544--379999-967996799982617888899999


No 77 
>TIGR00130 frhD coenzyme F420-reducing hydrogenase delta subunit (putative coenzyme F420 hydrogenase processing subunit).; InterPro: IPR004411   This group of sequence are classed as unassigned endopeptidases belonging to the MEROPS peptidase family A31 (HybD endopeptidase family, clan AE). The sequences in this family represent the delta subunit, frhD, of the nickel-containing 8-hydroxy-5-deazaflavin reducing hydrogenase otherwise known as coenzyme F420-reducing hydrogenase. The delta subunit is not part of the active FRH heterotrimer, which contains three known subunits, alpha, beta, and gamma. The alpha subunit contains the metallo centre, which binds nickel. When nickel binds to the metallo centre the alpha subunit is processed to the active enzyme by cleavage at a conserved site near the C-terminus. This entry contains the archaeal hydrogenase maturation endopeptidases of family A31 that are thought to be responsible for these cleavages . At present there is no direct evidence to support there classification as peptidases. ; GO: 0008233 peptidase activity, 0006464 protein modification process.
Probab=59.11  E-value=14  Score=17.49  Aligned_cols=79  Identities=15%  Similarity=0.203  Sum_probs=38.6

Q ss_pred             CCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCC-------------------HHHHHHHH-HHHHHHHH
Q ss_conf             88707987791058999999996899989999415789898989-------------------89999999-99999986
Q gi|254780905|r   13 QNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWE-------------------DHALKKRL-MFLFSDIL   72 (271)
Q Consensus        13 ~~~IgifDSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ks-------------------~~~I~~~~-~~~~~~ll   72 (271)
                      +.-|-+.|.|.||+..+..|...--..+-+=..|-  .=||.++                   ...+=++. ...+..+-
T Consensus        36 ~~~v~~~DAGtgg~~l~~~l~~e~~~~kKiiiVD~--i~fg~~PG~~~k~~v~~lpnna~k~~~~~~Hd~p~~~~L~~~~  113 (162)
T TIGR00130        36 KENVEVIDAGTGGFDLVNTLVDEEEKLKKIIIVDA--IDFGLEPGTVKKIEVEELPNNALKKYLIDAHDLPLAPVLRELS  113 (162)
T ss_pred             CCCCEEEECCCCHHHHHEECCCCCCCCCEEEEEEE--EECCCCCCEEEEECCCCCCCCCCCCCEECCCCCCHHHHHHHHH
T ss_conf             37847997675545653210034687576899988--7076798637761542066666786310115787678999987


Q ss_pred             HCCCCCEEEEECCCCCHHHHH
Q ss_conf             216984899717620263389
Q gi|254780905|r   73 DKYQPVLSVIACNTAFTLIKD   93 (271)
Q Consensus        73 ~k~~~~~IVIACNTasa~~~~   93 (271)
                      ++++...+||.|-..-..+.+
T Consensus       114 ~~q~i~~vVigc~~k~~~~p~  134 (162)
T TIGR00130       114 EKQGIEVVVIGCQEKEVSAPD  134 (162)
T ss_pred             HHHCCCEEEECCCCCEEECCC
T ss_conf             652787689746333000631


No 78 
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=58.90  E-value=14  Score=17.47  Aligned_cols=198  Identities=12%  Similarity=0.172  Sum_probs=92.4

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCEEEEECCCC-CHHHHHHHHHHCCCCCCCCCC-HHHHHHHHHCCCCCEEEEECHHHHCCH
Q ss_conf             999999999999986216984899717620-263389998625777654454-799999984078832998506773170
Q gi|254780905|r   58 HALKKRLMFLFSDILDKYQPVLSVIACNTA-FTLIKDELRSTFPSMAFLGAV-PAIKQAAAYTQSGLISILSTPATLRRT  135 (271)
Q Consensus        58 ~~I~~~~~~~~~~ll~k~~~~~IVIACNTa-sa~~~~~l~~~~~~ipiigii-~~~~~a~~~~~~~~VgiLAT~~Ti~s~  135 (271)
                      .++. -+.+.+..| ++.||++|=+|||+. ++.++..++++. ++|+++-+ ---+.|....+.+-=.+=--||-+.+.
T Consensus        39 ~Dv~-at~~Qi~~L-~~aGceiVRvavp~~~~a~al~~I~~~~-~iPlvADIHF~~~lAl~a~~~g~~kiRINPGNig~~  115 (367)
T PRK00366         39 ADVE-ATVAQIKRL-ARAGCEIVRVAVPDMEAAAALPEIKKQL-PVPLVADIHFDYRLALKAAEAGADALRINPGNIGRD  115 (367)
T ss_pred             HHHH-HHHHHHHHH-HHCCCCEEEECCCCHHHHHHHHHHHHHC-CCCEECCCCCCHHHHHHHHHHHHHHEEECCCCCCCH
T ss_conf             4389-999999999-9849998998459999999699999847-897031254148999999986411131378756864


Q ss_pred             -HHHHHHH---HCCCCCEEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCC--HHHHHHH-
Q ss_conf             -1689985---12788579770564225787766426776979999999998465410588789980563--5889999-
Q gi|254780905|r  136 -YTSNLIH---SYVSQCHIHLVSSMILASRVEEYACGIKIKEDEIKKEIEGCFIEKEGKRTDVIVLACTH--YPLIVHV-  208 (271)
Q Consensus       136 -~y~~~i~---~~~~~~~v~~~~~~~lv~~iE~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~iILGCTH--yPll~~~-  208 (271)
                       .+...++   .++..+.|-....+.--.+.+..  +..-.+..+...++. +..+...+.+-+++.|-.  .+..... 
T Consensus       116 e~~~~vv~~ak~~~ipIRIGvN~GSL~~~ll~ky--g~~~~~amveSAl~~-~~~~e~~~f~~iviS~KaS~v~~~v~ay  192 (367)
T PRK00366        116 ERFKEVVEAAKDYGIPIRIGVNAGSLEKDLLEKY--GEPTPEALVESALRH-AKILEELGFDDIKISVKASDVQDLIAAY  192 (367)
T ss_pred             HHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHC--CCCCHHHHHHHHHHH-HHHHHHCCCCCEEEEEECCCHHHHHHHH
T ss_conf             8899999999984997664467787679999870--898679999999999-9999978985599998728699999999


Q ss_pred             --HHHHCCCCCE------------EEECHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCHHH---HHHHHHHHCCCCC
Q ss_conf             --9986489978------------9828589999999998642733457788779996699799---9999998568889
Q gi|254780905|r  209 --FRQLSPWPVD------------WLDNSDSIARRARCLLPRINTHQTRVFDDHALFLSGKPDI---AMRRLMQGFGLKS  271 (271)
Q Consensus       209 --i~~~~~~~v~------------iIDpa~~va~~~~~~L~~~~~~~~~~~~~~~f~~T~~~~~---~~~~~~~~~G~~~  271 (271)
                        |.+..+.+..            .|-|+-++.    .      ++...-..+.+.=.|++|..   ..+.+++.+|+|.
T Consensus       193 r~la~~~dyPLHLGvTEAG~~~~G~IKSsvgig----~------LL~~GIGDTIRVSLT~dPv~EV~va~~IL~slglR~  262 (367)
T PRK00366        193 RLLAKRCDYPLHLGVTEAGMGFKGTVKSAAGLG----V------LLQEGIGDTIRVSLTADPVEEVKVGQEILQSLGLRS  262 (367)
T ss_pred             HHHHHHCCCCCEEEECCCCCCCCCCCCCHHHHH----H------HHHCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCC
T ss_conf             999985798834514267899783314067789----9------997599642898568881779999999999728663


No 79 
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=58.85  E-value=14  Score=17.46  Aligned_cols=187  Identities=16%  Similarity=0.116  Sum_probs=85.9

Q ss_pred             HHHHHHHHCCCCCEEEEECCCCCCCCC-----CCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf             999999968999899994157898989-----898999999999999986216984899717620263389998625777
Q gi|254780905|r   28 VLQKMRFLMPEYHFIYVADDVGFPYGN-----WEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSM  102 (271)
Q Consensus        28 v~~~l~~~lP~~~~iY~~D~~~~PYG~-----ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~~~~~i  102 (271)
                      ...+++ ..-..++.-+  -=++||.-     ++.+-   .+.+.+..+++.. ++-| +.++= |+   +.++.-| ++
T Consensus        68 ~i~A~r-~a~A~~It~V--iPY~~YsRQDr~~~~ge~---isak~va~ll~~~-~d~v-itvDl-H~---~~i~~fF-~~  134 (286)
T PRK00934         68 LLDALR-DEGVKSITLV--APYLAYARQDRRFKEGEP---ISIKALAKVYSSY-YDEI-ITINI-HE---EHTLEFF-DI  134 (286)
T ss_pred             HHHHHH-HCCCCEEEEE--CCCCCCCCCCCCCCCCCC---CCHHHHHHHHHHH-CCEE-EEEEC-CH---HHHHHCC-CC
T ss_conf             999998-7589738998--346553346434689986---5089999999753-1746-99947-88---7884046-89


Q ss_pred             CCCCCC--HHHHHHHHHCCCCCEEEEECHHH--HCCHHHHHHHHHCCCCCEEE--ECCCCCHHHH--HHHHHHCCC--CC
Q ss_conf             654454--79999998407883299850677--31701689985127885797--7056422578--776642677--69
Q gi|254780905|r  103 AFLGAV--PAIKQAAAYTQSGLISILSTPAT--LRRTYTSNLIHSYVSQCHIH--LVSSMILASR--VEEYACGIK--IK  172 (271)
Q Consensus       103 piigii--~~~~~a~~~~~~~~VgiLAT~~T--i~s~~y~~~i~~~~~~~~v~--~~~~~~lv~~--iE~~~~~~~--~~  172 (271)
                      |+.++-  |.+...... +..+.-|++....  -+...|.+.+.   .+..+.  ....+.-+..  ..-...+..  +-
T Consensus       135 p~~nl~~~~~~~~~~~~-~~~~~vVVsPD~G~~~ra~~~a~~Lg---~~~~~~~K~R~~~~~v~~~~~~~dV~Gr~~IIv  210 (286)
T PRK00934        135 PFTNLSAMPAIAEYIKE-KLVDPLVLAPDKGALERAKEVAEILG---CEYDYLEKKRISPTEVEMKPKDLDVKGKDVLIV  210 (286)
T ss_pred             CCCCCCCCHHHHHHHHH-HCCCCEEECCCCCHHHHHHHHHHHHC---CCEEEEEEECCCCCCCEEECCCCCCCCCEEEEE
T ss_conf             83111057145899984-38887898479748999999999753---646589974389985236235322258789996


Q ss_pred             HHHH--HHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHC-------------CCCCEEEECHHHHHHHHH
Q ss_conf             7999--9999998465410588789980563588999999864-------------899789828589999999
Q gi|254780905|r  173 EDEI--KKEIEGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLS-------------PWPVDWLDNSDSIARRAR  231 (271)
Q Consensus       173 ~~~~--~~~l~~~l~~~~~~~~D~iILGCTHyPll~~~i~~~~-------------~~~v~iIDpa~~va~~~~  231 (271)
                      ++.+  -..+-.....++..|+..+...|||--|-.+..+++.             |.++..|+-+..+|+.++
T Consensus       211 DDiidTGgTl~~aa~~Lk~~GA~~V~~~~THglfs~~A~~rl~~s~i~~ivvTnTip~~~~~isva~llAeair  284 (286)
T PRK00934        211 DDIISTGGTMAKAISILKEQGAKKIYVSCVHPVLVEDAINKIHSAGADELAVTNTIPSEVSKISVSPIIADLLN  284 (286)
T ss_pred             CCHHHCHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHCCCCEEEECCCCCCCCCEEEHHHHHHHHHC
T ss_conf             56221538899999999986998699999790078059999974899889985888998878781899999974


No 80 
>PRK06315 type III secretion system ATPase; Provisional
Probab=58.41  E-value=15  Score=17.41  Aligned_cols=107  Identities=19%  Similarity=0.171  Sum_probs=55.8

Q ss_pred             CCEEEE-ECCCCHHHHHHHHHHHCCCCCE-EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHH
Q ss_conf             870798-7791058999999996899989-99941578989898989999999999999862169848997176202633
Q gi|254780905|r   14 NSILIF-DSGIGGLIVLQKMRFLMPEYHF-IYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLI   91 (271)
Q Consensus        14 ~~Igif-DSGiGGLtv~~~l~~~lP~~~~-iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~   91 (271)
                      ..+||| |||+|==+.+..+.+.--+.++ +|.+      -|+|..| +.++.    +.++...+-+--|+-++|++.-.
T Consensus       165 QR~gIfagsGvGKs~Ll~~i~~~~~~adv~V~~l------IGeRgrE-v~efi----e~~~~~~~l~rsvvV~atsd~p~  233 (442)
T PRK06315        165 QRIGIFAGAGVGKSSLLGMIARNAEEADVNVIAL------IGERGRE-VREFI----EGDLGEEGMKRSVIVVSTSDQSS  233 (442)
T ss_pred             CEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEE------ECCCCHH-HHHHH----HHHHCCCCCCCEEEEECCCCCCH
T ss_conf             7764038999988899999997440389349999------5511379-99999----97520145213399961799987


Q ss_pred             HHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEECHHHHCCHHHHH
Q ss_conf             899986257776544547999999840788329985067731701689
Q gi|254780905|r   92 KDELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPATLRRTYTSN  139 (271)
Q Consensus        92 ~~~l~~~~~~ipiigii~~~~~a~~~~~~~~VgiLAT~~Ti~s~~y~~  139 (271)
                      ...++.     |..++  ++.+. ...+.++|.++...-|--...+.+
T Consensus       234 ~~R~~a-----~~~A~--aiAEy-Frd~G~~VLl~~DslTR~A~A~RE  273 (442)
T PRK06315        234 QLRLNA-----AYVGT--AIAEY-FRDQGKTVVLMMDSVTRFARALRE  273 (442)
T ss_pred             HHHHHH-----HHHHH--HHHHH-HHHCCCCEEEEECCCHHHHHHHHH
T ss_conf             887555-----88777--89999-986899489994370288889999


No 81 
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=57.95  E-value=15  Score=17.36  Aligned_cols=45  Identities=13%  Similarity=0.225  Sum_probs=36.0

Q ss_pred             CCCCCEEE--ECCCCHHHHHHHHHHHCC-CCCEEEECHHHHHHHHHHH
Q ss_conf             05887899--805635889999998648-9978982858999999999
Q gi|254780905|r  189 GKRTDVIV--LACTHYPLIVHVFRQLSP-WPVDWLDNSDSIARRARCL  233 (271)
Q Consensus       189 ~~~~D~iI--LGCTHyPll~~~i~~~~~-~~v~iIDpa~~va~~~~~~  233 (271)
                      ..++|.++  -|.|+.|++...+++.++ +..+.|+|-+++|.-..-.
T Consensus       307 ~~~I~~VilvGGstriP~V~~~v~~~f~~~~~~~inpdeava~GAa~q  354 (579)
T COG0443         307 KSDIDLVILVGGSTRIPAVQELVKEFFGKEPEKSINPDEAVALGAAIQ  354 (579)
T ss_pred             HHHCCEEEEECCEECCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
T ss_conf             532766998357755666999999982877435779747899999999


No 82 
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit; InterPro: IPR005969    Synonym: dark protochlorophyllide reductase    Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. The light-independent (dark) form of protochlorophyllide reductase plays a key role in the ability of gymnosperms, algae, and photosynthetic bacteria to form chlorophyll in the dark. Genetic and sequence analyses have indicated that dark protochlorophyllide reductase consists of three protein subunits that exhibit significant sequence similarity to the three subunits of nitrogenase, which catalyzes the reductive formation of ammonia from dinitrogen. Dark protochlorophyllide reductase activity was shown to be dependent on the presence of all three subunits, ATP, and the reductant dithionite .; GO: 0016730 oxidoreductase activity acting on iron-sulfur proteins as donors, 0015995 chlorophyll biosynthetic process, 0019685 photosynthesis dark reaction.
Probab=56.48  E-value=16  Score=17.20  Aligned_cols=192  Identities=14%  Similarity=0.138  Sum_probs=73.6

Q ss_pred             EEEEECCCCHHHHHHHHHHHCC----CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHH
Q ss_conf             0798779105899999999689----998999941578989898989999999999999862169848997176202633
Q gi|254780905|r   16 ILIFDSGIGGLIVLQKMRFLMP----EYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLI   91 (271)
Q Consensus        16 IgifDSGiGGLtv~~~l~~~lP----~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~   91 (271)
                      ||-++=|==-..=+.+|++.|-    ..+.|       +|||- |-+++.++...-++=.+-+      =++|.||    
T Consensus       169 lGp~~LGFH~r~D~~elrrlL~~LG~evN~v-------~P~GA-~i~dL~~lp~Aw~NI~pYr------E~G~~aA----  230 (562)
T TIGR01278       169 LGPASLGFHHRHDLIELRRLLKTLGIEVNVV-------APWGA-SIADLARLPAAWLNIAPYR------EIGLMAA----  230 (562)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHCCEEEEEE-------CCCCC-CHHHHHHHHHHHCCCCCCH------HHHHHHH----
T ss_conf             1411334232103389999996589479897-------37998-8588988666212235525------5899999----


Q ss_pred             HHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEECHHHHCCHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf             89998625777654454799999984078832998506773170168998512788579770564225787766426776
Q gi|254780905|r   92 KDELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYACGIKI  171 (271)
Q Consensus        92 ~~~l~~~~~~ipiigii~~~~~a~~~~~~~~VgiLAT~~Ti~s~~y~~~i~~~~~~~~v~~~~~~~lv~~iE~~~~~~~~  171 (271)
                       ..|+++| .+|-|-..|             |||-+|.-=++  ..+..+++.+-+--...++.+.+-..|-++..... 
T Consensus       231 -~YL~E~F-g~p~i~~~P-------------iGv~~T~~f~~--~i~~~l~~~G~d~G~ap~~~~~~~~f~~~~~~~~s-  292 (562)
T TIGR01278       231 -EYLKEKF-GIPYITETP-------------IGVNATRRFIR--EIAALLNQAGADKGMAPVAMPELESFILDGLSAVS-  292 (562)
T ss_pred             -HHHHHHC-CCCHHHCCC-------------CCHHHHHHHHH--HHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCC-
T ss_conf             -9998745-885012177-------------76688999999--99999986488757666673013554212567765-


Q ss_pred             CHHHHHHHHHHHHH--H-HHCCCCCEEEEC-CCCHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             97999999999846--5-410588789980-5635889999998648997898285899999999986427334577887
Q gi|254780905|r  172 KEDEIKKEIEGCFI--E-KEGKRTDVIVLA-CTHYPLIVHVFRQLSPWPVDWLDNSDSIARRARCLLPRINTHQTRVFDD  247 (271)
Q Consensus       172 ~~~~~~~~l~~~l~--~-~~~~~~D~iILG-CTHyPll~~~i~~~~~~~v~iIDpa~~va~~~~~~L~~~~~~~~~~~~~  247 (271)
                         . -..+.+..+  . +.++  -++|-| |||--=+-+.+++-+|  ++||--+-.+=....+.=++...+..     
T Consensus       293 ---~-~aWFaRsiD~~~aL~GK--ra~VFGD~tHavg~T~~L~~ElG--~~vv~AGTY~k~~a~wvr~~~~gY~d-----  359 (562)
T TIGR01278       293 ---Q-VAWFARSIDSQSALTGK--RAFVFGDATHAVGVTKLLRDELG--IHVVGAGTYCKEQADWVREQVAGYVD-----  359 (562)
T ss_pred             ---C-CCCHHHHHHHHHHCCCC--CEEEECCCHHHHHHHHHHHHHCC--CEEEEECCCCHHHHHHHHHHHHHCCC-----
T ss_conf             ---4-43022202103011588--46986784489999999886379--17987247986689999999830388-----


Q ss_pred             EEEEECCCH
Q ss_conf             799966997
Q gi|254780905|r  248 HALFLSGKP  256 (271)
Q Consensus       248 ~~f~~T~~~  256 (271)
                      .+.++|++-
T Consensus       360 GEvlv~ddf  368 (562)
T TIGR01278       360 GEVLVTDDF  368 (562)
T ss_pred             CEEEEECCH
T ss_conf             248882535


No 83 
>PRK11027 hypothetical protein; Provisional
Probab=55.64  E-value=16  Score=17.12  Aligned_cols=76  Identities=13%  Similarity=0.054  Sum_probs=37.3

Q ss_pred             EECCCCCCCC-CCCH------HHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCHH-HHHHH
Q ss_conf             9415789898-9898------99999999999998621698489971762026338999862577765445479-99999
Q gi|254780905|r   44 VADDVGFPYG-NWED------HALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGAVPA-IKQAA  115 (271)
Q Consensus        44 ~~D~~~~PYG-~ks~------~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~~~~~ipiigii~~-~~~a~  115 (271)
                      |-|.+|+||| .||.      +++.+.-=..+..|. .+.    ..+||---..++..++...  -|.=-.+.. +|...
T Consensus        11 F~DdknfPrGF~RsGdFTi~Ea~lLe~yG~~m~~L~-~G~----~~P~t~eE~~Fv~~~~G~~--~a~s~~Ek~WlKY~~   83 (110)
T PRK11027         11 FFDDKNFPRGFSRSGDFTIKEAQLLERYGYAMKALD-LGK----REPVTEEEKQFVAVCRGER--EPVTEFEKVWLKYMK   83 (110)
T ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH-HCC----CCCCCHHHHHHHHHHCCCC--CCCCHHHHHHHHHHH
T ss_conf             655677887644168755899999999879999998-088----5889878999999983887--787899999999999


Q ss_pred             HHCCCCCEEEE
Q ss_conf             84078832998
Q gi|254780905|r  116 AYTQSGLISIL  126 (271)
Q Consensus       116 ~~~~~~~VgiL  126 (271)
                      ...+.++..-|
T Consensus        84 ~~~~~krf~tl   94 (110)
T PRK11027         84 RIRRPKRFHTL   94 (110)
T ss_pred             HHCCCCCEEEC
T ss_conf             83689841753


No 84 
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=55.15  E-value=17  Score=17.06  Aligned_cols=108  Identities=19%  Similarity=0.092  Sum_probs=58.3

Q ss_pred             CCEEEE-ECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHH
Q ss_conf             870798-7791058999999996899989999415789898989899999999999998621698489971762026338
Q gi|254780905|r   14 NSILIF-DSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIK   92 (271)
Q Consensus        14 ~~Igif-DSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~   92 (271)
                      ..+||| |||+|==|++..+.+.-...-.+|.+      .|+|.+| +.++..+.    +...+-+--|+-|+|++.-..
T Consensus       157 QR~gIfg~sGvGKstLl~~i~~~~~adv~Vi~l------IGeRgrE-v~efi~~~----l~~~gl~~tvvV~atsd~p~~  225 (432)
T PRK06793        157 QKIGIFAGSGVGKSTLLGMIAKNAKADINVISL------VGERGRE-VKDFIRKE----LGEEGMRKSVVVVATSDESHL  225 (432)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEE------EEEECHH-HHHHHHHH----HHCCCCCCEEEEEECCCCCHH
T ss_conf             266663268987899999998724578657999------8886279-99999998----644675212788725889989


Q ss_pred             HHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEECHHHHCCHHHHHH
Q ss_conf             999862577765445479999998407883299850677317016899
Q gi|254780905|r   93 DELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPATLRRTYTSNL  140 (271)
Q Consensus        93 ~~l~~~~~~ipiigii~~~~~a~~~~~~~~VgiLAT~~Ti~s~~y~~~  140 (271)
                      ..++.     |..++  ++.+-- ..+.++|.++-+.-|--...|.+.
T Consensus       226 ~r~~a-----~~~a~--aiAEyf-rd~G~~VLli~DslTr~A~A~REi  265 (432)
T PRK06793        226 MQLRA-----AKLAT--SIAEYF-RDQGNNVLLMMDSVTRFADARRSV  265 (432)
T ss_pred             HHHHH-----HHHHH--HHHHHH-HHCCCCEEEEECCHHHHHHHHHHH
T ss_conf             99988-----75512--378899-866996899945678888887477


No 85 
>pfam02601 Exonuc_VII_L Exonuclease VII, large subunit. This family consist of exonuclease VII, large subunit EC:3.1.11.6 This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. This exonuclease VII enzyme is composed of one large subunit and 4 small ones.
Probab=55.06  E-value=17  Score=17.05  Aligned_cols=69  Identities=13%  Similarity=0.025  Sum_probs=47.3

Q ss_pred             CCEEEEECCCC-HH-HHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf             87079877910-58-999999996899989999415789898989899999999999998621698489971762
Q gi|254780905|r   14 NSILIFDSGIG-GL-IVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNT   86 (271)
Q Consensus        14 ~~IgifDSGiG-GL-tv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNT   86 (271)
                      ..|||.-|--| |+ -+++.+.++.|..++++|  .+-+ =|+....+|.+ ..+.++..-....+|+|||+=-=
T Consensus        15 ~~IgvITS~~gAa~~Di~~~~~~r~p~~~i~l~--p~~V-QG~~a~~~I~~-ai~~~~~~~~~~~~Dviii~RGG   85 (295)
T pfam02601        15 KRIAVITSATGAAYQDFLRTARRRGPLVEIEIY--PTLV-QGDGAAESIVS-ALERANERETALDYDVIVIIRGG   85 (295)
T ss_pred             CEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEE--CCCC-CCCHHHHHHHH-HHHHHHHCCCCCCCCEEEEECCC
T ss_conf             989998489408999999999981999679994--7357-65048999999-99999846898998389995786


No 86 
>PRK00129 upp uracil phosphoribosyltransferase; Reviewed
Probab=53.94  E-value=17  Score=16.94  Aligned_cols=99  Identities=15%  Similarity=0.207  Sum_probs=46.3

Q ss_pred             CCCHHHHHHHHHCCCCCEEEEECHHHHCCHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf             45479999998407883299850677317016899851278857977056422578776642677697999999999846
Q gi|254780905|r  106 GAVPAIKQAAAYTQSGLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYACGIKIKEDEIKKEIEGCFI  185 (271)
Q Consensus       106 gii~~~~~a~~~~~~~~VgiLAT~~Ti~s~~y~~~i~~~~~~~~v~~~~~~~lv~~iE~~~~~~~~~~~~~~~~l~~~l~  185 (271)
                      +|.++........+.++||+---+.|.+-..|-..+-..-.+..|. .-.|.++.            ...+-..++    
T Consensus        82 ~m~~~~~~~~P~a~vg~Igi~Rde~T~~p~~yy~kLP~~i~~~~Vl-llDPmlAT------------G~s~~~ai~----  144 (208)
T PRK00129         82 GMVDGVLKLIPSARVGHVGAYRDEETLEPVEYLEKLPSDIDERTVI-VVDPMLAT------------GGSMIAAID----  144 (208)
T ss_pred             HHHHHHHHHCCCCCCCEEEEEECCCCCCEEEEHHHCCCCCCCCEEE-EECCHHHC------------CHHHHHHHH----
T ss_conf             5889999868875400588995477777067563286444668799-87855643------------766999999----


Q ss_pred             HHHCCCCCEEEECC-CCHHHHHHHHHHHCCCCCEEEEC
Q ss_conf             54105887899805-63588999999864899789828
Q gi|254780905|r  186 EKEGKRTDVIVLAC-THYPLIVHVFRQLSPWPVDWLDN  222 (271)
Q Consensus       186 ~~~~~~~D~iILGC-THyPll~~~i~~~~~~~v~iIDp  222 (271)
                      .+++.+++.+++-| -=-|-=.+.+.+.+| +++++=.
T Consensus       145 ~L~~~G~~~I~~v~~ias~~Gi~~v~~~~P-~v~I~ta  181 (208)
T PRK00129        145 LLKKRGAKRIKVLCLVAAPEGIKALEEAHP-DVEIYTA  181 (208)
T ss_pred             HHHHCCCCEEEEEEEEECHHHHHHHHHHCC-CCEEEEE
T ss_conf             999669973899999964899999998787-9789999


No 87 
>TIGR02350 prok_dnaK chaperone protein DnaK; InterPro: IPR012725    Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes, the grpE protein is a co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold . DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle.    Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for the Mycoplasma sequence) found clustered with other genes of this systems. This entry excludes DnaK homologues that are not DnaK itself, such as the heat shock cognate protein HscA (IPR010236 from INTERPRO). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of DnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; the lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.; GO: 0005524 ATP binding, 0051082 unfolded protein binding, 0006457 protein folding.
Probab=53.22  E-value=18  Score=16.86  Aligned_cols=44  Identities=11%  Similarity=0.181  Sum_probs=35.6

Q ss_pred             HHHCCCCCEEEE--CCCCHHHHHHHHHHHCCCC-CEEEECHHHHHHH
Q ss_conf             541058878998--0563588999999864899-7898285899999
Q gi|254780905|r  186 EKEGKRTDVIVL--ACTHYPLIVHVFRQLSPWP-VDWLDNSDSIARR  229 (271)
Q Consensus       186 ~~~~~~~D~iIL--GCTHyPll~~~i~~~~~~~-v~iIDpa~~va~~  229 (271)
                      .+....+|.|||  |.|-.|.+....++++|+. -+=|+|-|.||-=
T Consensus       320 ~l~~~~I~~v~LVGG~TRiP~V~~~V~~~~GK~p~~~vNPDEvVAiG  366 (598)
T TIGR02350       320 GLSASDIDEVILVGGSTRIPAVQELVKEFFGKEPNKSVNPDEVVAIG  366 (598)
T ss_pred             CCCHHHCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
T ss_conf             78843666689855884124899999987298878888805888887


No 88 
>COG4995 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.95  E-value=18  Score=16.83  Aligned_cols=26  Identities=12%  Similarity=0.125  Sum_probs=11.2

Q ss_pred             CHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf             98999999999999986216984899
Q gi|254780905|r   56 EDHALKKRLMFLFSDILDKYQPVLSV   81 (271)
Q Consensus        56 s~~~I~~~~~~~~~~ll~k~~~~~IV   81 (271)
                      +..++.+....-++..+++.+++-++
T Consensus       141 ~s~~ly~wlI~Pi~~~l~~~~i~tl~  166 (420)
T COG4995         141 SSQQLYDWLISPIESLLKALEIKTLI  166 (420)
T ss_pred             HHHHHHHHHHCCHHHHHHHCCCCEEE
T ss_conf             89999888644388887536751367


No 89 
>COG4643 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.93  E-value=17  Score=17.03  Aligned_cols=10  Identities=20%  Similarity=0.468  Sum_probs=4.1

Q ss_pred             HHHHHHHHCC
Q ss_conf             9999998648
Q gi|254780905|r  205 IVHVFRQLSP  214 (271)
Q Consensus       205 l~~~i~~~~~  214 (271)
                      +...|++.+|
T Consensus       241 VA~al~~~~P  250 (366)
T COG4643         241 VASALRKKFP  250 (366)
T ss_pred             HHHHHHHHCC
T ss_conf             9999997689


No 90 
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=52.77  E-value=18  Score=16.82  Aligned_cols=121  Identities=18%  Similarity=0.221  Sum_probs=63.5

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHH-----HHHHHHHHCCCCCEEEEECCCCC
Q ss_conf             8707987791058999999996899989999415789898989899999999-----99999862169848997176202
Q gi|254780905|r   14 NSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLM-----FLFSDILDKYQPVLSVIACNTAF   88 (271)
Q Consensus        14 ~~IgifDSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~-----~~~~~ll~k~~~~~IVIACNTas   88 (271)
                      +.|.|+--|.-|+++.+.|.++-.... ++..|+.-.|-..   +++.+-..     .-.+ .++  ++++||+ .--..
T Consensus         8 KkvlV~GlG~sG~s~a~~L~~~~~~~~-v~~~D~~~~~~~~---~~l~~~~~~~~g~~~~~-~l~--~~d~vV~-SPGI~   79 (438)
T PRK04663          8 KNVVVVGLGITGLSVVKHLRKTQPQLT-VKVIDTRETPPGQ---EQLPEDVELHSGGWNQD-WLA--EADLVVT-NPGIA   79 (438)
T ss_pred             CEEEEEEECHHHHHHHHHHHHCCCCCE-EEEECCCCCHHHH---HHHHCCCEEEECCCCHH-HHC--CCCEEEE-CCCCC
T ss_conf             749999067858999999996699846-9996398893688---76206976972788967-836--8999998-99769


Q ss_pred             --HHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEECHH--HHCCHHHHHHHHHCCCCC
Q ss_conf             --633899986257776544547999999840788329985067--731701689985127885
Q gi|254780905|r   89 --TLIKDELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPA--TLRRTYTSNLIHSYVSQC  148 (271)
Q Consensus        89 --a~~~~~l~~~~~~ipiigii~~~~~a~~~~~~~~VgiLAT~~--Ti~s~~y~~~i~~~~~~~  148 (271)
                        .-.+...+++  ++||++=++-   +....+.+.|||=||.|  |..+ .....+++.+...
T Consensus        80 ~~~p~~~~a~~~--~i~i~~eiel---~~~~~~~~iIaVTGTnGKTTTts-li~~iL~~~g~~~  137 (438)
T PRK04663         80 LATPEIQPVLAK--GIPVVGDIEL---FAWAVDKPVIAITGSNGKSTVTD-LTGVMAKAAGVKV  137 (438)
T ss_pred             CCCHHHHHHHHC--CCCEECHHHH---HHHHCCCCEEEEECCCCHHHHHH-HHHHHHHHCCCCC
T ss_conf             989899999986--9937038899---97645897899948998289999-9999998289970


No 91 
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=52.48  E-value=18  Score=16.79  Aligned_cols=47  Identities=2%  Similarity=0.105  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHHHHHHCCCCCEEEEECCCC-CHHHHHHHHHHCCCCCCCCCC
Q ss_conf             99999999999986216984899717620-263389998625777654454
Q gi|254780905|r   59 ALKKRLMFLFSDILDKYQPVLSVIACNTA-FTLIKDELRSTFPSMAFLGAV  108 (271)
Q Consensus        59 ~I~~~~~~~~~~ll~k~~~~~IVIACNTa-sa~~~~~l~~~~~~ipiigii  108 (271)
                      ++.. +.+.+..| ++.||+++=++|++. ++.++..++++. ++|+++-+
T Consensus        34 Dv~a-Tv~QI~~L-~~aG~dIVRvtv~~~e~A~A~~~Ik~~~-~vPLVaDi   81 (361)
T COG0821          34 DVEA-TVAQIKAL-ERAGCDIVRVTVPDMEAAEALKEIKQRL-NVPLVADI   81 (361)
T ss_pred             CHHH-HHHHHHHH-HHCCCCEEEEECCCHHHHHHHHHHHHHC-CCCEEEEE
T ss_conf             1799-99999999-9818978999369978999999999847-99879873


No 92 
>pfam04412 DUF521 Protein of unknown function (DUF521). Family of hypothetical proteins.
Probab=52.38  E-value=14  Score=17.58  Aligned_cols=61  Identities=21%  Similarity=0.334  Sum_probs=33.3

Q ss_pred             CCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHH-HHHHHHCC-----CCC-EEEECHHHHHHHHHH
Q ss_conf             7697999999999846541058878998056358899-99998648-----997-898285899999999
Q gi|254780905|r  170 KIKEDEIKKEIEGCFIEKEGKRTDVIVLACTHYPLIV-HVFRQLSP-----WPV-DWLDNSDSIARRARC  232 (271)
Q Consensus       170 ~~~~~~~~~~l~~~l~~~~~~~~D~iILGCTHyPll~-~~i~~~~~-----~~v-~iIDpa~~va~~~~~  232 (271)
                      .++.+.+++..+.+ . -.+..+|.+.|||-|+.+-. ..+.+.+.     .++ -+|-.+..+..++.+
T Consensus       267 ~i~~~dl~~~~~~l-~-~~~~~vDlV~lGcPH~Sl~El~~la~ll~gr~~~~~~~~~V~Tsr~v~~~a~~  334 (397)
T pfam04412       267 TITAADLAAVWEEL-N-ATGEEVDLVALGCPHASLEELRELAELLAGRKKAPGVPLWVTTSRAVYSKAER  334 (397)
T ss_pred             EECHHHHHHHHHHC-C-CCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHH
T ss_conf             97899999999970-7-88987387997799999999999999972677789962999858999998776


No 93 
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=52.36  E-value=18  Score=16.77  Aligned_cols=116  Identities=17%  Similarity=0.125  Sum_probs=50.5

Q ss_pred             EEEEECCCCHHHHHHHHHHHCCCCC-----------EEEEECCCC-CCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf             0798779105899999999689998-----------999941578-9898989899999999999998621698489971
Q gi|254780905|r   16 ILIFDSGIGGLIVLQKMRFLMPEYH-----------FIYVADDVG-FPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIA   83 (271)
Q Consensus        16 IgifDSGiGGLtv~~~l~~~lP~~~-----------~iY~~D~~~-~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIA   83 (271)
                      |-|-..| ||..+++.+++..-...           -.|++|..+ .|..+  .   ..+..++.+ +.++.++++| |+
T Consensus         4 ILvt~~G-~~~~ii~~lk~~~~~~~Vi~~D~~~~a~~~~~aD~~y~~P~~~--d---~~y~~~ll~-i~~~~~id~i-iP   75 (325)
T PRK12767          4 ILVTSAG-RRVQLVKALKKSLLGGKVIGADISPLAPALYFADKFYVVPKVT--D---PNYIDALLD-ICKKENIDAL-IP   75 (325)
T ss_pred             EEEECCC-CHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHCCEEEECCCCC--C---HHHHHHHHH-HHHHHCCCEE-EE
T ss_conf             9998678-6899999999769985999968998995344548899878889--8---789999999-9998799999-97


Q ss_pred             CCCCCHHHHHHHHHHCC--CCCCCCCC-HHHHHHHHHCC----CCCEEEEECHHHHCCHHHHHH
Q ss_conf             76202633899986257--77654454-79999998407----883299850677317016899
Q gi|254780905|r   84 CNTAFTLIKDELRSTFP--SMAFLGAV-PAIKQAAAYTQ----SGLISILSTPATLRRTYTSNL  140 (271)
Q Consensus        84 CNTasa~~~~~l~~~~~--~ipiigii-~~~~~a~~~~~----~~~VgiLAT~~Ti~s~~y~~~  140 (271)
                      +.......+...++.+.  ++.+++-- +++..+....+    -+..|+ -||.|..-.-..+.
T Consensus        76 ~~d~El~~la~~~~~l~~~gi~v~~~~~e~i~~~~DK~~~~~~l~~~gi-p~P~t~~~~~~~~~  138 (325)
T PRK12767         76 LIDPELPLLAQHRDEFKEIGVKVLVSSKEVIEICNDKWLTYEFLKENGI-NTPKSYLPEDLEDL  138 (325)
T ss_pred             CCCHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCC-CCCCCCCCCCHHHH
T ss_conf             7850266899999999967998956979999985499999999997599-98982055899999


No 94 
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=52.30  E-value=12  Score=17.99  Aligned_cols=93  Identities=20%  Similarity=0.250  Sum_probs=44.2

Q ss_pred             CCEEEEECCCCH-H-HHHHHHHHH-CCCCCEEEEECCCC-----------CCCC-----C-CCHHHHHHHHHHHHHHHHH
Q ss_conf             870798779105-8-999999996-89998999941578-----------9898-----9-8989999999999999862
Q gi|254780905|r   14 NSILIFDSGIGG-L-IVLQKMRFL-MPEYHFIYVADDVG-----------FPYG-----N-WEDHALKKRLMFLFSDILD   73 (271)
Q Consensus        14 ~~IgifDSGiGG-L-tv~~~l~~~-lP~~~~iY~~D~~~-----------~PYG-----~-ks~~~I~~~~~~~~~~ll~   73 (271)
                      ..|+||=||=|. | .+++++... +|.+-..-+.|+..           .|+-     + .+++   ++-.++.+ .++
T Consensus         2 kkiavl~SG~GSNl~aii~a~~~~~l~~~i~~Visn~~~a~~l~~A~~~~Ip~~~i~~~~~~~r~---~~d~~i~~-~L~   77 (200)
T PRK05647          2 KRIVVLASGNGSNLQAIIDACAAGQLPAEVVAVISDRPDAYGLERAEQAGIPTFVLDHKDFPSRE---AFDAALVE-ALD   77 (200)
T ss_pred             CEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEECCCCCCCHH---HHHHHHHH-HHH
T ss_conf             78999991580449999999875999948999997897536659999759976996776679989---99999999-998


Q ss_pred             CCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCHHHHH
Q ss_conf             1698489971762026338999862577765445479999
Q gi|254780905|r   74 KYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGAVPAIKQ  113 (271)
Q Consensus        74 k~~~~~IVIACNTasa~~~~~l~~~~~~ipiigii~~~~~  113 (271)
                      +.++|+||+|== +.-.- +.+-++|++ .||++=|++-+
T Consensus        78 ~~~vDlIvLAGy-Mril~-~~~l~~~~~-kIiNiHPsLLP  114 (200)
T PRK05647         78 AYEPDLVVLAGF-MRILG-PTFVSAYEG-RIINIHPSLLP  114 (200)
T ss_pred             HCCCCEEEECCH-HHHCC-HHHHHHCCC-CCEEECCCCCC
T ss_conf             649999999881-33389-899953779-95677542035


No 95 
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative; InterPro: IPR004560 This family shows similarity to other isomerases. Putative identification as hexulose-6-phosphate isomerase has been reported. This family is conserved at better than 40 0dentity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.; GO: 0016861 intramolecular oxidoreductase activity interconverting aldoses and ketoses, 0005975 carbohydrate metabolic process.
Probab=52.10  E-value=17  Score=16.93  Aligned_cols=176  Identities=14%  Similarity=0.159  Sum_probs=83.9

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHH---HHCCCCCEEEEECCCCCHHHHH---HHHHHCCCCCCCCCCHHHHHHHHHCCC
Q ss_conf             5789898989899999999999998---6216984899717620263389---998625777654454799999984078
Q gi|254780905|r   47 DVGFPYGNWEDHALKKRLMFLFSDI---LDKYQPVLSVIACNTAFTLIKD---ELRSTFPSMAFLGAVPAIKQAAAYTQS  120 (271)
Q Consensus        47 ~~~~PYG~ks~~~I~~~~~~~~~~l---l~k~~~~~IVIACNTasa~~~~---~l~~~~~~ipiigii~~~~~a~~~~~~  120 (271)
                      .-|||.|+|.+ .+++..++|+++-   -.+-|...|=+|--=.  .+.+   +-+.+|    .-||..++..|....-+
T Consensus        76 HRRFPlGS~d~-~~r~~~~eIm~KAi~La~~lGIR~IQLAgYDV--YYe~~d~eT~~~F----~~gl~~~velA~~~qVt  148 (290)
T TIGR00542        76 HRRFPLGSKDK-AVRQQGLEIMEKAIQLARDLGIRIIQLAGYDV--YYEEHDEETRRRF----IEGLKKAVELAAKAQVT  148 (290)
T ss_pred             HCCCCCCCCCH-HHHHHHHHHHHHHHHHHHHCCCEEEEECCCCC--CCCCCCCHHHHHH----HHHHHHHHHHHHHHHHH
T ss_conf             13498988517-89999999999999999757960662233300--3355760458999----98899999999875465


Q ss_pred             CCEEEEECHH--HH-CCHHHHHHHHHCCCCCEEEEC--CCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCC---
Q ss_conf             8329985067--73-170168998512788579770--564225787766426776979999999998465410588---
Q gi|254780905|r  121 GLISILSTPA--TL-RRTYTSNLIHSYVSQCHIHLV--SSMILASRVEEYACGIKIKEDEIKKEIEGCFIEKEGKRT---  192 (271)
Q Consensus       121 ~~VgiLAT~~--Ti-~s~~y~~~i~~~~~~~~v~~~--~~~~lv~~iE~~~~~~~~~~~~~~~~l~~~l~~~~~~~~---  192 (271)
                      =-+=|+=||.  || +..-|.+.|.  .+...+++=  +-+.|-+.|+.-+.-+.  +..+--+++. ..|..+...   
T Consensus       149 lA~EiMDtpfm~sIs~~~~~~~~l~--~pwf~lYPDiGNLSaw~n~v~~El~lGi--d~I~a~H~KD-T~Pvt~~s~gqF  223 (290)
T TIGR00542       149 LAVEIMDTPFMSSISRWLKWDKILN--SPWFTLYPDIGNLSAWSNDVEDELALGI--DKIVAIHLKD-TKPVTETSKGQF  223 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHC--CCCEEECCCCCCHHHCCCCHHHHHHHCC--CCEEEEEEEC-CCCCCCCCCCCC
T ss_conf             3466641334789999988999860--8880653774441011510699997188--7188887414-877456888740


Q ss_pred             -CE-EEECCCCHHHHHHHHHHHCCCCCEEE------ECHHHHHHHHHHHH
Q ss_conf             -78-99805635889999998648997898------28589999999998
Q gi|254780905|r  193 -DV-IVLACTHYPLIVHVFRQLSPWPVDWL------DNSDSIARRARCLL  234 (271)
Q Consensus       193 -D~-iILGCTHyPll~~~i~~~~~~~v~iI------Dpa~~va~~~~~~L  234 (271)
                       |+ -==||-.|--..+.|++.-+..--+|      ||++.++.-+..+.
T Consensus       224 k~VPFG~G~vdF~~~f~~l~~~~y~g~~LIEMWse~dPaestv~p~~e~~  273 (290)
T TIGR00542       224 KDVPFGEGCVDFEAAFKTLKQLNYRGPFLIEMWSEKDPAESTVEPVAEII  273 (290)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHH
T ss_conf             43899875048889999998606975536632478885223555899999


No 96 
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=51.28  E-value=19  Score=16.66  Aligned_cols=80  Identities=18%  Similarity=0.012  Sum_probs=43.8

Q ss_pred             EEECCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEECHHHHCCHHHHHHHHHCCCCCEEEECCCCCHHH
Q ss_conf             97176202633899986257776544547999999840788329985067731701689985127885797705642257
Q gi|254780905|r   81 VIACNTAFTLIKDELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSSMILAS  160 (271)
Q Consensus        81 VIACNTasa~~~~~l~~~~~~ipiigii~~~~~a~~~~~~~~VgiLAT~~Ti~s~~y~~~i~~~~~~~~v~~~~~~~lv~  160 (271)
                      +=||||.. .--..+. -+ +-+..|.+.+++......+.+++.|||.-|+-++-.|.-.-. ....+.|.......-..
T Consensus        86 igavNTi~-~~~g~l~-G~-NTD~~G~~~~l~~~~~~~~~k~vlIlGaGGaarai~~al~~~-g~~~i~i~nR~~~~a~~  161 (275)
T PRK00258         86 AGAVNTLV-LEDGRLI-GD-NTDGIGFVRDLERLGLDLKGKRILLLGAGGAARAVILPLLEL-GVAEITIVNRTVERAEE  161 (275)
T ss_pred             HCCEEEEE-EECCEEE-EE-ECCHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHC-CCCEEEEEECCHHHHHH
T ss_conf             45545899-5599899-98-367789999999848785687599988871079999999976-99989999589999999


Q ss_pred             HHHH
Q ss_conf             8776
Q gi|254780905|r  161 RVEE  164 (271)
Q Consensus       161 ~iE~  164 (271)
                      +++.
T Consensus       162 l~~~  165 (275)
T PRK00258        162 LAEL  165 (275)
T ss_pred             HHHH
T ss_conf             9998


No 97 
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=50.53  E-value=19  Score=16.59  Aligned_cols=59  Identities=15%  Similarity=0.161  Sum_probs=43.2

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCHHH
Q ss_conf             98989898999999999999986216984899717620263389998625777654454799
Q gi|254780905|r   50 FPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGAVPAI  111 (271)
Q Consensus        50 ~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~~~~~ipiigii~~~  111 (271)
                      -|+|  +-.++...++..++.++++..+|++++-=-|.++.+- .|-+.+..||+.+|+-+.
T Consensus        68 ~~~~--tl~~~t~~~i~~~~~vl~~~kPD~VlVhGDT~t~lA~-alaa~~~~IpV~HvEAGl  126 (383)
T COG0381          68 KPGQ--TLGEITGNIIEGLSKVLEEEKPDLVLVHGDTNTTLAG-ALAAFYLKIPVGHVEAGL  126 (383)
T ss_pred             CCCC--CHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHH-HHHHHHHCCCEEEEECCC
T ss_conf             6688--8899999999999999986299989991785368899-999998689368874254


No 98 
>KOG2949 consensus
Probab=49.80  E-value=20  Score=16.51  Aligned_cols=43  Identities=7%  Similarity=0.028  Sum_probs=16.5

Q ss_pred             ECHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCC-HHHHHHHH
Q ss_conf             28589999999998642733457788779996699-79999999
Q gi|254780905|r  221 DNSDSIARRARCLLPRINTHQTRVFDDHALFLSGK-PDIAMRRL  263 (271)
Q Consensus       221 Dpa~~va~~~~~~L~~~~~~~~~~~~~~~f~~T~~-~~~~~~~~  263 (271)
                      +-++..-+.+++++++....--+..+.+.|-++.+ -+.|...+
T Consensus       260 n~~~~i~~al~eYi~eVe~~~fP~~~hs~fki~~~~~~~fls~l  303 (306)
T KOG2949         260 NVGEVINKALQEYIEEVEKGLFPGPSHSPFKIKESLLDGFLSEL  303 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECHHHHHHHHHHH
T ss_conf             05778999999999998626678989886152198898899986


No 99 
>PRK13148 consensus
Probab=49.63  E-value=20  Score=16.50  Aligned_cols=29  Identities=24%  Similarity=0.473  Sum_probs=21.2

Q ss_pred             CCEEEEECCCCHH-HHHHHHHHHCCCCCEE
Q ss_conf             8707987791058-9999999968999899
Q gi|254780905|r   14 NSILIFDSGIGGL-IVLQKMRFLMPEYHFI   42 (271)
Q Consensus        14 ~~IgifDSGiGGL-tv~~~l~~~lP~~~~i   42 (271)
                      ..|||.|-|+|=| ||.+++.+.-.+.+++
T Consensus         2 ~~I~IIDyg~GNl~Sv~~al~~~g~~~~~~   31 (225)
T PRK13148          2 STIAIVDYGMGNFHSVARALQHAAPDADIR   31 (225)
T ss_pred             CEEEEEECCCHHHHHHHHHHHHHCCCCCEE
T ss_conf             879999799449999999999857897399


No 100
>TIGR01464 hemE uroporphyrinogen decarboxylase; InterPro: IPR006361   This entry represents uroporphyrinogen decarboxylase (HemE), which catalyzes the fifth step in the heme biosynthetic pathway, converting uroporphyrinogen III to coproporphyrinogen III by decarboxylating the four acetate side chains of the substrate . This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products.   This activity is essential in all organisms, and subnormal activity of URO-D leads to the most common form of porphyria in humans, porphyria cutanea tarda (PCT).; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin biosynthetic process.
Probab=49.16  E-value=15  Score=17.34  Aligned_cols=28  Identities=7%  Similarity=0.156  Sum_probs=15.5

Q ss_pred             HHHCCCCCEEEECHHHHHHHHHHHHHHCC
Q ss_conf             98648997898285899999999986427
Q gi|254780905|r  210 RQLSPWPVDWLDNSDSIARRARCLLPRIN  238 (271)
Q Consensus       210 ~~~~~~~v~iIDpa~~va~~~~~~L~~~~  238 (271)
                      |--|+ +..+..|.+.+-+++.++|..-+
T Consensus       289 QGNLD-P~~L~~~~~~l~~~~~~~l~~~~  316 (351)
T TIGR01464       289 QGNLD-PAVLYAPEEALEEKVERILEAFG  316 (351)
T ss_pred             ECCCC-HHHHCCCHHHHHHHHHHHHHHHC
T ss_conf             56433-22221898999999999999731


No 101
>KOG0090 consensus
Probab=49.07  E-value=21  Score=16.44  Aligned_cols=26  Identities=15%  Similarity=0.230  Sum_probs=15.4

Q ss_pred             HHHHHHHHHCCC----CCEEEEECCCCCCC
Q ss_conf             999999996899----98999941578989
Q gi|254780905|r   27 IVLQKMRFLMPE----YHFIYVADDVGFPY   52 (271)
Q Consensus        27 tv~~~l~~~lP~----~~~iY~~D~~~~PY   52 (271)
                      ..-+++.+++|+    .-++|+-|++-+|=
T Consensus        94 rlR~kl~e~~~~~~~akaiVFVVDSa~f~k  123 (238)
T KOG0090          94 RLRRKLLEYLKHNYSAKAIVFVVDSATFLK  123 (238)
T ss_pred             HHHHHHHHHCCCCCCCEEEEEEEECCCCCH
T ss_conf             899999987346552215999983322460


No 102
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; InterPro: IPR006009    The murG gene of Escherichia coli encodes the N-acetylglucosaminyltransferase, UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase, responsible for the final step in the formation of the lipid-linked disaccharide-pentapeptide subunit of peptidoglycan. The enzyme is peripherally associated with the inner face of the cytoplasmic membrane. Therefore, the peptidoglycan subunit is completely assembled before it traverses the cytoplasmic membrane .; GO: 0050511 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase activity, 0019277 UDP-N-acetylgalactosamine biosynthetic process, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=48.90  E-value=21  Score=16.42  Aligned_cols=109  Identities=16%  Similarity=0.266  Sum_probs=59.2

Q ss_pred             CCEEEEECCCCHH----HHHHHHHHHCCCCCEEEEECCCCCCCCCCC-HH--------------------------HHHH
Q ss_conf             8707987791058----999999996899989999415789898989-89--------------------------9999
Q gi|254780905|r   14 NSILIFDSGIGGL----IVLQKMRFLMPEYHFIYVADDVGFPYGNWE-DH--------------------------ALKK   62 (271)
Q Consensus        14 ~~IgifDSGiGGL----tv~~~l~~~lP~~~~iY~~D~~~~PYG~ks-~~--------------------------~I~~   62 (271)
                      ..|-+.=.|-||+    .|.++++++-|+.+++|+|+....=..--. +.                          .+..
T Consensus         6 ~~~~~~gGGTGG~fPAlA~a~~l~~~~~~~~v~~lG~~~g~e~~lv~~~~~~~~~~i~~~gl~~~~~~~~~~~~~~~~~~   85 (368)
T TIGR01133         6 KKVALAGGGTGGIFPALAVAEELIKRGPEVEVVWLGTKRGLEERLVPSKEGIEFLTIPVGGLRRKGSKKLLKLPLLKLLK   85 (368)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf             28999727830268999999999974893699985067750000343215741777740100365510146788999999


Q ss_pred             HHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCC-CCCC---CCCHHHHHHHHHCCCCCEEE
Q ss_conf             999999998621698489971762026338999862577-7654---45479999998407883299
Q gi|254780905|r   63 RLMFLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPS-MAFL---GAVPAIKQAAAYTQSGLISI  125 (271)
Q Consensus        63 ~~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~~~~~-ipii---gii~~~~~a~~~~~~~~Vgi  125 (271)
                      -+.+ +.+++.+..+++| +.---=+|. ---+-++... ||++   +.+|+.-.-......++|++
T Consensus        86 ~~~~-a~~~l~~~~p~~v-~G~GGY~s~-P~~~AA~l~g~iP~~~EQN~~pG~~Nk~ls~~A~~V~~  149 (368)
T TIGR01133        86 AVLQ-ARRILKKFKPDVV-VGFGGYVSG-PAGLAAKLLGRIPLILEQNAVPGLTNKLLSRFAKRVLV  149 (368)
T ss_pred             HHHH-HHHHHHHCCCCEE-EECCCHHHH-HHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCEEEE
T ss_conf             9999-9999860087479-874736789-99999876679948986154125788887887443111


No 103
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=48.84  E-value=21  Score=16.42  Aligned_cols=51  Identities=8%  Similarity=0.195  Sum_probs=24.4

Q ss_pred             CCCCCC--CHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf             989898--989999999999999862169848997176202633899986257776544
Q gi|254780905|r   50 FPYGNW--EDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLG  106 (271)
Q Consensus        50 ~PYG~k--s~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~~~~~ipiig  106 (271)
                      +|||+-  |.++    +.+...++++..|+++|=+-++.-..-..+.|.+.  +||+.|
T Consensus        80 mPf~sy~~s~~~----A~~nA~rl~ke~GadaVKlEgg~~~~~~i~~L~~~--GIPV~g  132 (254)
T cd06557          80 MPFGSYQTSPEQ----ALRNAARLMKEAGADAVKLEGGAEVAETIRALVDA--GIPVMG  132 (254)
T ss_pred             CCCCCCCCCHHH----HHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHC--CCCEEE
T ss_conf             566545799999----99999999985599989979883389999999987--997665


No 104
>pfam04219 DUF413 Protein of unknown function, DUF.
Probab=48.82  E-value=21  Score=16.41  Aligned_cols=76  Identities=11%  Similarity=0.001  Sum_probs=36.8

Q ss_pred             EECCCCCCCC-CCCH------HHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCHH-HHHHH
Q ss_conf             9415789898-9898------99999999999998621698489971762026338999862577765445479-99999
Q gi|254780905|r   44 VADDVGFPYG-NWED------HALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGAVPA-IKQAA  115 (271)
Q Consensus        44 ~~D~~~~PYG-~ks~------~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~~~~~ipiigii~~-~~~a~  115 (271)
                      |-|.+|+||| .||.      +++.+.--..+..| +.+.    ..++|---..++..++..-  -|.=-.+.+ +|...
T Consensus         2 F~D~~nfPrGF~RsGdFTi~Ea~lLe~yG~~~~~L-~~G~----~~P~t~eE~~Fv~v~~Ge~--~p~s~~Ek~W~KY~~   74 (94)
T pfam04219         2 FYDDKNFPRGFSRSGDFTIKEAELLEQYGCAMLAL-ESGE----REPETEEEEQFVAVCKGEQ--APSTEIEKVWLKYLK   74 (94)
T ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH-HCCC----CCCCCHHHHHHHHHHCCCC--CCCCHHHHHHHHHHH
T ss_conf             87678788864527876799999999996999999-8399----4889988999999983888--898999999999999


Q ss_pred             HHCCCCCEEEE
Q ss_conf             84078832998
Q gi|254780905|r  116 AYTQSGLISIL  126 (271)
Q Consensus       116 ~~~~~~~VgiL  126 (271)
                      .....+++.-|
T Consensus        75 ~~~~~krf~tl   85 (94)
T pfam04219        75 LIRGKKRFYTL   85 (94)
T ss_pred             HHCCCCCEEEC
T ss_conf             85699805863


No 105
>PRK13176 consensus
Probab=48.24  E-value=18  Score=16.89  Aligned_cols=22  Identities=23%  Similarity=0.309  Sum_probs=18.3

Q ss_pred             CEEEEECCCCHH-HHHHHHHHHC
Q ss_conf             707987791058-9999999968
Q gi|254780905|r   15 SILIFDSGIGGL-IVLQKMRFLM   36 (271)
Q Consensus        15 ~IgifDSGiGGL-tv~~~l~~~l   36 (271)
                      .|||.|.|+|-| ||.+++.+..
T Consensus         2 kI~IIDyg~GNi~Sv~~al~~~g   24 (216)
T PRK13176          2 RVAIIDYGSGNLHSATKAFERAA   24 (216)
T ss_pred             EEEEEECCCCHHHHHHHHHHHHH
T ss_conf             89999069837999999999987


No 106
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=46.09  E-value=18  Score=16.77  Aligned_cols=48  Identities=17%  Similarity=0.058  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHHCCCCCE-EEECCCCHHHHHHHHHHHCCCCCEEEECHHHH
Q ss_conf             99999846541058878-99805635889999998648997898285899
Q gi|254780905|r  178 KEIEGCFIEKEGKRTDV-IVLACTHYPLIVHVFRQLSPWPVDWLDNSDSI  226 (271)
Q Consensus       178 ~~l~~~l~~~~~~~~D~-iILGCTHyPll~~~i~~~~~~~v~iIDpa~~v  226 (271)
                      .++++.+..++..+.+. +|.=|..-..+.+.+.+. +-++-=+|....+
T Consensus       215 p~~~~I~~~ik~~~~~vpiI~f~~~~~~~l~~~~~~-~~d~isiD~~~~l  263 (335)
T cd00717         215 PYLKRIIEEVKKRLPGVPVILFAKGAGGLLEDLAQL-GADVVGLDWRVDL  263 (335)
T ss_pred             HHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHC-CCCEEECCCCCCH
T ss_conf             999999999985289997899768857899999863-9877742777898


No 107
>pfam05621 TniB Bacterial TniB protein. This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein which is involved in Tn5053 mercury resistance transposition.
Probab=45.75  E-value=23  Score=16.11  Aligned_cols=99  Identities=18%  Similarity=0.281  Sum_probs=62.9

Q ss_pred             CCCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCC--------EEEEE---------------CCCCCCCCCCCHHHHH
Q ss_conf             433446348870798779105899999999689998--------99994---------------1578989898989999
Q gi|254780905|r    5 NYPCEKKLQNSILIFDSGIGGLIVLQKMRFLMPEYH--------FIYVA---------------DDVGFPYGNWEDHALK   61 (271)
Q Consensus         5 ~~~~~~~~~~~IgifDSGiGGLtv~~~l~~~lP~~~--------~iY~~---------------D~~~~PYG~ks~~~I~   61 (271)
                      ++|....|-+-.-+=|||+|==+++++..+..|...        ++|.-               +...+||.....  +.
T Consensus        54 ~~P~~~Rmp~lLlvGdsnnGKT~Iv~rF~~~hp~~~d~~~~~~PVl~vq~P~~p~~~~lY~~IL~~l~aP~~~~~~--~~  131 (302)
T pfam05621        54 AWPNKQRMPNLLLVGPTNNGKSMIVEKFRRAHPAGSDADQEHIPVLVVQMPSEPSVIRFYVALLAAMGAPLRPRPR--LP  131 (302)
T ss_pred             HCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC--HH
T ss_conf             4686468875588707988789999999996799878666702189997699988689999999983787788877--89


Q ss_pred             HHHHHHHHHHHHCCCCCEEEEE------CCCCC-----HHHHHHHHHHCCCCCCCCC
Q ss_conf             9999999998621698489971------76202-----6338999862577765445
Q gi|254780905|r   62 KRLMFLFSDILDKYQPVLSVIA------CNTAF-----TLIKDELRSTFPSMAFLGA  107 (271)
Q Consensus        62 ~~~~~~~~~ll~k~~~~~IVIA------CNTas-----a~~~~~l~~~~~~ipiigi  107 (271)
                      + -...+-.++.+.+++++||=      +.|..     -.++..|-+.. .||++++
T Consensus       132 ~-~~~~~~~ll~~~~vrmLIIDEiHnlL~Gs~~~qr~~ln~LK~L~Nel-~IpiV~v  186 (302)
T pfam05621       132 E-MEQLALALLRKVGVRMLVIDELHNVLAGNSVNRREFLNLLRFLGNEL-RIPLVGV  186 (302)
T ss_pred             H-HHHHHHHHHHHCCCCEEEEECHHHHCCCCHHHHHHHHHHHHHHHHCC-CCCEEEE
T ss_conf             9-99999999997498789985436560486889999999999986365-8786995


No 108
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=45.65  E-value=22  Score=16.28  Aligned_cols=14  Identities=36%  Similarity=0.427  Sum_probs=9.3

Q ss_pred             CEEEEECHHHHCCH
Q ss_conf             32998506773170
Q gi|254780905|r  122 LISILSTPATLRRT  135 (271)
Q Consensus       122 ~VgiLAT~~Ti~s~  135 (271)
                      -||..|-|-|+-+.
T Consensus       141 LIGF~GaPwTLasY  154 (347)
T PRK00115        141 LIGFAGSPWTLATY  154 (347)
T ss_pred             EEEECCCHHHHHHH
T ss_conf             57644765999999


No 109
>COG1911 RPL30 Ribosomal protein L30E [Translation, ribosomal structure and biogenesis]
Probab=45.34  E-value=23  Score=16.07  Aligned_cols=57  Identities=14%  Similarity=0.177  Sum_probs=30.0

Q ss_pred             HHHCCCCCEEEEECCCCCHHHHHHHH--HHCCCCCCCCCC-HHHHHHHHHCCCCCEEEEEC
Q ss_conf             86216984899717620263389998--625777654454-79999998407883299850
Q gi|254780905|r   71 ILDKYQPVLSVIACNTAFTLIKDELR--STFPSMAFLGAV-PAIKQAAAYTQSGLISILST  128 (271)
Q Consensus        71 ll~k~~~~~IVIACNTasa~~~~~l~--~~~~~ipiigii-~~~~~a~~~~~~~~VgiLAT  128 (271)
                      .+..+.+++||||-|+..-. .+.+.  +...++||+.-. -....-....+.-+|+.||-
T Consensus        30 ~lk~gkaKliiiAsN~P~~~-k~~ieyYAkLs~ipV~~y~Gt~~eLG~~cgkpf~v~~laI   89 (100)
T COG1911          30 SLKLGKAKLIIIASNCPKEL-KEDIEYYAKLSDIPVYVYEGTSVELGTVCGKPFRVAALAI   89 (100)
T ss_pred             HHHCCCCCEEEEECCCCHHH-HHHHHHHHHHCCCCEEEECCCCEEHHHHHCCCCEEEEEEE
T ss_conf             99759974999946798889-9999999987298379964886237776089805789999


No 110
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=44.60  E-value=24  Score=15.99  Aligned_cols=43  Identities=14%  Similarity=0.223  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf             99999999984654105887899805635889999998648997898
Q gi|254780905|r  174 DEIKKEIEGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSPWPVDWL  220 (271)
Q Consensus       174 ~~~~~~l~~~l~~~~~~~~D~iILGCTHyPll~~~i~~~~~~~v~iI  220 (271)
                      ++.+..++. ...+...++..++|=|.-..+-+.. .+.+  +++.|
T Consensus       153 ~~a~~l~~d-A~ale~AGa~~ivlE~vp~~la~~I-t~~~--~IPtI  195 (240)
T cd06556         153 EAGEQLIAD-ALAYAPAGADLIVMECVPVELAKQI-TEAL--AIPLA  195 (240)
T ss_pred             HHHHHHHHH-HHHHHHCCCEEEEEECCCHHHHHHH-HHCC--CCCEE
T ss_conf             999999999-9999847984998745849999999-9569--99899


No 111
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase; InterPro: IPR012698   Phosphonates are a class of organophosphorus compounds, characterised by a stable C-P bond, which are found in a variety of biologically produced molecules including antiobiotics, lipids, proteins and polysaccharides . The functions of these molecules include phosphorus storage, cell communication, host recognition and chemical warfare. Phosphoenolpyruvate (PEP) phosphomutase catalyses the reversible conversion of PEP to 3-phosphonopyruvate, forming a stable C-P bond, which is the entry point to all known phosphonate biosynthetic pathways .   This entry consists of characterised and predicted PEP phosphomutases found in bacterial and eukayotic species. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this entry, and the functional identification of some more distantly related sequences, such as from Bacteroides fragilis, Treponema denticola, and Clostridium tetani E88 is unknown.   PEP phosphomutase forms a modified TIM barrel fold where the eighth alpha helix adopts a different conformation than in the classical TIM barrel fold . The substrate binds in the central channel of the barrel and is anchored to the active site by the Mg(2+) cofactor . In the absence of substrate the active site is acessible to the solvent, while substrate-binding causes a conformational change where a large loop shields the site from solvent . This shielding appears to be required for catalysis to occur.; GO: 0050188 phosphoenolpyruvate mutase activity.
Probab=44.26  E-value=20  Score=16.57  Aligned_cols=68  Identities=18%  Similarity=0.241  Sum_probs=32.4

Q ss_pred             CEEE-EECCCCHHHHHHHHHHHCC--CCCEEEEECCCCCC-----CCCC--CHHHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf             7079-8779105899999999689--99899994157898-----9898--9899999999999998621698489971
Q gi|254780905|r   15 SILI-FDSGIGGLIVLQKMRFLMP--EYHFIYVADDVGFP-----YGNW--EDHALKKRLMFLFSDILDKYQPVLSVIA   83 (271)
Q Consensus        15 ~Igi-fDSGiGGLtv~~~l~~~lP--~~~~iY~~D~~~~P-----YG~k--s~~~I~~~~~~~~~~ll~k~~~~~IVIA   83 (271)
                      ||.| =|||.|-+--.|.+.+++-  .+.=+=|=|+. ||     +|++  .-..|.+++.++=.--=.+-.++++|+|
T Consensus        73 PvLvDgDtGyGNFNnARr~arkle~~GaaG~ClEDk~-FPK~NSf~gdrahpLAdi~EFcgkikAcKD~~~DpdFv~VA  150 (272)
T TIGR02320        73 PVLVDGDTGYGNFNNARRLARKLEDRGAAGVCLEDKV-FPKMNSFFGDRAHPLADIEEFCGKIKACKDAQRDPDFVVVA  150 (272)
T ss_pred             CEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEECCCC-CCCCCCCCCCCCCCCCCHHHHHCCHHEEECCCCCCCEEEEH
T ss_conf             1685378798714679999999974686322203555-76413342788887888154404100200678997536623


No 112
>PRK10926 ferredoxin-NADP reductase; Provisional
Probab=44.24  E-value=24  Score=15.96  Aligned_cols=25  Identities=4%  Similarity=-0.039  Sum_probs=10.5

Q ss_pred             CCCCEEEEECHHHHCCHHHHHHHHH
Q ss_conf             7883299850677317016899851
Q gi|254780905|r  119 QSGLISILSTPATLRRTYTSNLIHS  143 (271)
Q Consensus       119 ~~~~VgiLAT~~Ti~s~~y~~~i~~  143 (271)
                      ..++|-++=..-+...-+|.+.+++
T Consensus       133 ~~~~i~L~~g~R~~~dl~y~del~~  157 (248)
T PRK10926        133 RFKNLVLVHAARYAADLSYLPLMQE  157 (248)
T ss_pred             CCCCEEEEEECCCHHHHHHHHHHHH
T ss_conf             7787899995798788232899999


No 113
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB; InterPro: IPR006379   This subfamily falls within the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The Class II subfamilies are characterised by a domain that is located between the second and third conserved catalytic motifs of the superfamily domain. The IIB subfamily is distinguished from the IIA subfamily (IPR006357 from INTERPRO) by homology and the predicted secondary structure of this domain by PSI-PRED. The IIB subfamilys Class II domain has the following predicted structure: Helix-Sheet-Sheet-(Helix or Sheet)-Helix-Sheet-(variable)-Helix-Sheet-Sheet. The IIB subfamily consists of trehalose-6-phosphatase, plant and cyanobacterial sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase, a large subfamily of Cof-like hydrolases, containing many closely related bacterial sequences, a hypothetical equivalog containing the Escherichia coli YedP protein, as well as two other small clusters whose relationship to the other groups is unclear.; GO: 0003824 catalytic activity, 0008152 metabolic process.
Probab=44.22  E-value=24  Score=15.95  Aligned_cols=37  Identities=19%  Similarity=0.272  Sum_probs=21.3

Q ss_pred             CCCC-CCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf             9898-989899999999999998621698489971762
Q gi|254780905|r   50 FPYG-NWEDHALKKRLMFLFSDILDKYQPVLSVIACNT   86 (271)
Q Consensus        50 ~PYG-~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNT   86 (271)
                      +|.+ +++..++.......+.++.++.+.+++++.==+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~vTGR~   48 (261)
T TIGR01484        11 LDPGPNPEAHELSEELIEALERLREKLGVKVVLVTGRS   48 (261)
T ss_pred             CCCCCCHHHHCCCHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf             78988842210686789999999971694189973865


No 114
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=43.82  E-value=25  Score=15.91  Aligned_cols=52  Identities=12%  Similarity=0.307  Sum_probs=33.2

Q ss_pred             CCCCCCCCCCCCCEEEEECCCC---HHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHH
Q ss_conf             5543344634887079877910---5899999999689998999941578989898989999
Q gi|254780905|r    3 IDNYPCEKKLQNSILIFDSGIG---GLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALK   61 (271)
Q Consensus         3 ~~~~~~~~~~~~~IgifDSGiG---GLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~   61 (271)
                      ..+|.......+++..+=.|+|   =||+++++.+.-+..++.++       ||+|+.+++.
T Consensus       102 ~G~F~l~~~~~~~~vliAgGiGITPilSMl~~l~~~~~~~~v~l~-------y~~r~~~d~~  156 (335)
T PRK10684        102 MGEFTCDDKAEDKYLLLAAGCGVTPIMSMRRWLAKNRPQADVQVI-------FNVRTPQDVI  156 (335)
T ss_pred             CCCCEECCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEE-------EEECCCCCHH
T ss_conf             455252567898689996541215699999999961999978999-------9717710078


No 115
>COG0407 HemE Uroporphyrinogen-III decarboxylase [Coenzyme metabolism]
Probab=43.42  E-value=25  Score=15.87  Aligned_cols=36  Identities=6%  Similarity=0.041  Sum_probs=19.3

Q ss_pred             HHHHHHHHHHHHCCCCC-EEEECCCCHHHHHHHHHHH
Q ss_conf             99999984654105887-8998056358899999986
Q gi|254780905|r  177 KKEIEGCFIEKEGKRTD-VIVLACTHYPLIVHVFRQL  212 (271)
Q Consensus       177 ~~~l~~~l~~~~~~~~D-~iILGCTHyPll~~~i~~~  212 (271)
                      ..+..++.+..+..+.+ .+|+=|.--.++...+.+.
T Consensus       226 ~~~~~~i~~~vk~~~~~~pii~f~~ga~~~l~~m~~~  262 (352)
T COG0407         226 LPYMKRIVREVKEVKGGVPVIHFCKGAGHLLEDMAKT  262 (352)
T ss_pred             HHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHC
T ss_conf             5679999999887289986899778827789999862


No 116
>cd01355 AcnX Putative Aconitase X catalytic domain. Putative Aconitase X catalytic domain. It is predicted by comparative genomic analysis. The proteins are mainly found in archaea and proteobacteria. They are distantly related to Aconitase family of proteins by sequence similarity and seconary structure prediction. The functions have not yet been experimentally characterized. Thus, the prediction should be treated with caution.
Probab=42.98  E-value=15  Score=17.42  Aligned_cols=55  Identities=18%  Similarity=0.346  Sum_probs=27.3

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHH-----HHHHHHH-CCCCC-EEEECHHHHH
Q ss_conf             69799999999984654105887899805635889-----9999986-48997-8982858999
Q gi|254780905|r  171 IKEDEIKKEIEGCFIEKEGKRTDVIVLACTHYPLI-----VHVFRQL-SPWPV-DWLDNSDSIA  227 (271)
Q Consensus       171 ~~~~~~~~~l~~~l~~~~~~~~D~iILGCTHyPll-----~~~i~~~-~~~~v-~iIDpa~~va  227 (271)
                      ++...+++..+.+ .. ....+|.+.|||-|+.+-     .+.++.. ...++ -+|-.+..+.
T Consensus       260 i~~~dl~~~~~~l-~~-~~~~~DlV~lGcPH~Sl~El~~la~ll~gr~~~~~~~~~I~Tsr~v~  321 (389)
T cd01355         260 LTRADLDEARENL-NA-DGSEPDLVVLGCPHASLEELRKLADLLAGRRVAPSVPLYVTTSRAVY  321 (389)
T ss_pred             ECHHHHHHHHHHH-CC-CCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCHHHH
T ss_conf             6699999999972-68-88861089977999999999999999836777899629998799999


No 117
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase; InterPro: IPR005990    Synonyms: Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase     IMP dehydrogenase (1.1.1.205 from EC,IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP .  Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH     IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans . IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it and adopts a TIM barrel structure.; GO: 0003938 IMP dehydrogenase activity, 0006177 GMP biosynthetic process.
Probab=42.72  E-value=23  Score=16.14  Aligned_cols=71  Identities=20%  Similarity=0.277  Sum_probs=45.2

Q ss_pred             HHHCCCCCEEEECCCC------HHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHH-HCC-----CCCCCCCCCEEEEEC
Q ss_conf             5410588789980563------5889999998648997898285899999999986-427-----334577887799966
Q gi|254780905|r  186 EKEGKRTDVIVLACTH------YPLIVHVFRQLSPWPVDWLDNSDSIARRARCLLP-RIN-----THQTRVFDDHALFLS  253 (271)
Q Consensus       186 ~~~~~~~D~iILGCTH------yPll~~~i~~~~~~~v~iIDpa~~va~~~~~~L~-~~~-----~~~~~~~~~~~f~~T  253 (271)
                      .|.+.++|.||+=|-|      .-.++ .+|+.+| ++.+|=.+.+++++++.|.+ .-+     ..+-+-|.+...+--
T Consensus       246 ~L~~AGvDv~viDsshGhs~~vl~~ik-~~k~~Yp-~~~iiaGNVaT~~~a~~LI~AgADg~rVGiGpGSICTTr~V~gV  323 (476)
T TIGR01302       246 ALVEAGVDVIVIDSSHGHSIYVLDSIK-KIKKTYP-DLDIIAGNVATAEQAKALIDAGADGLRVGIGPGSICTTRIVAGV  323 (476)
T ss_pred             HHHHCCCCEEEEECCCCCCHHHHHHHH-HHHHHCC-EEEEEECCCCCHHHHHHHHHCCCCEEEECCCCCCCCEEEEEEEC
T ss_conf             999659658998166545378999999-9986388-05799434411788988985288878983688981100156512


Q ss_pred             CCHHH
Q ss_conf             99799
Q gi|254780905|r  254 GKPDI  258 (271)
Q Consensus       254 ~~~~~  258 (271)
                      |-|+-
T Consensus       324 GvPQ~  328 (476)
T TIGR01302       324 GVPQI  328 (476)
T ss_pred             CCHHH
T ss_conf             76268


No 118
>PRK11382 frlB fructoselysine-6-P-deglycase; Provisional
Probab=42.64  E-value=26  Score=15.80  Aligned_cols=40  Identities=10%  Similarity=0.343  Sum_probs=23.2

Q ss_pred             HHHHHHHHCCCCCEEEEECCCCCHHHH--HHHHHHCCCCCCC
Q ss_conf             999998621698489971762026338--9998625777654
Q gi|254780905|r   66 FLFSDILDKYQPVLSVIACNTAFTLIK--DELRSTFPSMAFL  105 (271)
Q Consensus        66 ~~~~~ll~k~~~~~IVIACNTasa~~~--~~l~~~~~~ipii  105 (271)
                      ++++.+..|.--+.+++||-|+-.+++  ..+-+++.++|+.
T Consensus        41 ~~~~e~~~k~i~rI~ivaCGTSyhA~l~~ky~~E~~~~ipv~   82 (347)
T PRK11382         41 AIVEEMVKRDIDRIYFVACGSPLNAAQTAKHLADRFSDLQVY   82 (347)
T ss_pred             HHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHHHCCCEE
T ss_conf             999998737998799997508899999999999998699848


No 119
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=42.43  E-value=26  Score=15.77  Aligned_cols=67  Identities=9%  Similarity=0.168  Sum_probs=38.7

Q ss_pred             CCEEEE-ECCCCHHHHHHHHHHHCCC---CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCH
Q ss_conf             870798-7791058999999996899---989999415789898989899999999999998621698489971762026
Q gi|254780905|r   14 NSILIF-DSGIGGLIVLQKMRFLMPE---YHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFT   89 (271)
Q Consensus        14 ~~Igif-DSGiGGLtv~~~l~~~lP~---~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa   89 (271)
                      ..+||| +||+|=-+.+.++.+..-.   .-.||.|      -|+|.+|- .++.    ..+.+.+.-+-.|+-+||++.
T Consensus       142 qrigIfggaGvGKTvL~~~ii~n~~~~~~~v~V~~~------iGER~rEv-~e~~----~el~~~g~l~~tvvV~~~~de  210 (459)
T PRK12597        142 GKTGLFGGAGVGKTVLMMELIFNISKRHQGSSVFAG------VGERSREG-HELY----LEMKESGVLDKTVMVYGQMNE  210 (459)
T ss_pred             CEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEE------ECCCHHHH-HHHH----HHHHHCCCCCEEEEEECCCCC
T ss_conf             777743689998215789999987755178368886------24546889-9999----998636875248999806889


Q ss_pred             HH
Q ss_conf             33
Q gi|254780905|r   90 LI   91 (271)
Q Consensus        90 ~~   91 (271)
                      -.
T Consensus       211 pp  212 (459)
T PRK12597        211 PP  212 (459)
T ss_pred             CH
T ss_conf             99


No 120
>pfam07355 GRDB Glycine/sarcosine/betaine reductase selenoprotein B (GRDB). This family represents a conserved region approximately 350 residues long within the selenoprotein B component of the bacterial glycine, sarcosine and betaine reductase complexes.
Probab=41.94  E-value=26  Score=15.73  Aligned_cols=103  Identities=15%  Similarity=0.164  Sum_probs=54.3

Q ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHCCC-C---CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEE-----
Q ss_conf             3488707987791058999999996899-9---899994157898989898999999999999986216984899-----
Q gi|254780905|r   11 KLQNSILIFDSGIGGLIVLQKMRFLMPE-Y---HFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSV-----   81 (271)
Q Consensus        11 ~~~~~IgifDSGiGGLtv~~~l~~~lP~-~---~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IV-----   81 (271)
                      +.+-+-.+-+.-+|-=.   .+...|.+ .   .-|+.||+=    =+-..++..+..++    ++++..+|++|     
T Consensus        22 kAd~~pe~~eg~vGpg~---~l~~~l~~~~eIv~TiICGDnY----f~en~dea~~~il~----mv~~~~pDlfiAGPAF   90 (349)
T pfam07355        22 KADIPPEVREGLVGPGL---QLNGLLKDEAEVVHTVICGDSY----FNENIEEAVAEILE----MLKEEKPDLFIAGPAF   90 (349)
T ss_pred             CCCCCCCCCCCCCCHHH---HHHHHHCCCCEEEEEEEECCHH----HHCCHHHHHHHHHH----HHHHCCCCEEEECCCC
T ss_conf             17898703448888699---9999846787899999968624----44099999999999----9984299989876632


Q ss_pred             ------EECCCCCHHHHHHHHHHCCCCCCCC-CCHHHHHHHHHCCCCCEEEEECHHH
Q ss_conf             ------7176202633899986257776544-5479999998407883299850677
Q gi|254780905|r   82 ------IACNTAFTLIKDELRSTFPSMAFLG-AVPAIKQAAAYTQSGLISILSTPAT  131 (271)
Q Consensus        82 ------IACNTasa~~~~~l~~~~~~ipiig-ii~~~~~a~~~~~~~~VgiLAT~~T  131 (271)
                            +||-|..    ..+++++ +||.+. |-+ -++.+...+ +.+-|+-|...
T Consensus        91 nAGRYGvACG~i~----kaV~e~l-~IP~vTgMy~-ENPGvdm~k-k~~yIv~t~ns  140 (349)
T pfam07355        91 NAGRYGVACGTIA----KAVKEEL-GIPAVTGMYV-ENPGVDMFK-KDVYIISTGNS  140 (349)
T ss_pred             CCCCHHHHHHHHH----HHHHHHH-CCCEEEECCC-CCCCHHHHH-CCEEEEECCCH
T ss_conf             5642588899999----9999986-9963864156-685076764-44289965841


No 121
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=41.66  E-value=27  Score=15.70  Aligned_cols=72  Identities=24%  Similarity=0.254  Sum_probs=37.4

Q ss_pred             CCEEEE-ECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHH
Q ss_conf             870798-7791058999999996899989999415789898989899999999999998621698489971762026338
Q gi|254780905|r   14 NSILIF-DSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIK   92 (271)
Q Consensus        14 ~~Igif-DSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~   92 (271)
                      ..+||| |||+|==+.+..+.+. -+.+++.++=     -|+|.+ |+.++..    .++...+-+--|+-++|++...+
T Consensus       169 QR~gIfggsGvGKS~Ll~~i~r~-~~adv~Vi~l-----IGERgr-Ev~efi~----~~l~~~~~~~svvV~atsd~~p~  237 (451)
T PRK05688        169 QRLGLFAGTGVGKSVLLGMMTRF-TEADIIVVGL-----IGERGR-EVKEFIE----HILGEEGLKRSVVVASPADDAPL  237 (451)
T ss_pred             CEEEECCCCCCCHHHHHHHHHHH-HCCCEEEEEE-----EEEEHH-HHHHHHH----HHHHCCCCCEEEEEECCCCCCHH
T ss_conf             56421048898689999999885-2798699996-----127759-9999999----98515674305898338889879


Q ss_pred             HHHH
Q ss_conf             9998
Q gi|254780905|r   93 DELR   96 (271)
Q Consensus        93 ~~l~   96 (271)
                      ..++
T Consensus       238 ~r~~  241 (451)
T PRK05688        238 MRLR  241 (451)
T ss_pred             HHHH
T ss_conf             9999


No 122
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=41.66  E-value=27  Score=15.70  Aligned_cols=196  Identities=15%  Similarity=0.169  Sum_probs=107.6

Q ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHH-HHHHHHHHHHHHHHHCCCCCEEEEECCCCC
Q ss_conf             6348870798779105899999999689998999941578989898989-999999999999862169848997176202
Q gi|254780905|r   10 KKLQNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDH-ALKKRLMFLFSDILDKYQPVLSVIACNTAF   88 (271)
Q Consensus        10 ~~~~~~IgifDSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~-~I~~~~~~~~~~ll~k~~~~~IVIACNTas   88 (271)
                      +.-..++-|.-.|=+|--.++++++. |+...+-|=|..--.-|.+=.. -+.. ..+ +..++++.+.+.|+||=.+++
T Consensus       113 ~~~~~r~lIiGAG~ag~~l~r~~~~~-~~~~pV~fiDdd~~~~g~~i~Gv~V~g-~~~-i~~~v~~~~~~~iiiAips~~  189 (588)
T COG1086         113 KDNRIRLLIIGAGSAGDLLLRALRRD-PEYTPVAFLDDDPDLTGMKIRGVPVLG-RIE-IERVVEELGIQLILIAIPSAS  189 (588)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHC-CCCCEEEEECCCHHHCCCEEECEEEEC-HHH-HHHHHHHCCCCEEEEECCCCC
T ss_conf             46788669993765899999999748-996159998887365188770226423-147-999999718766999648788


Q ss_pred             HHHHHHHHHHCCCCCC-CCCCHH----------------------------HHHHHHHCCCCCEEEEECHHHHCCHHHHH
Q ss_conf             6338999862577765-445479----------------------------99999840788329985067731701689
Q gi|254780905|r   89 TLIKDELRSTFPSMAF-LGAVPA----------------------------IKQAAAYTQSGLISILSTPATLRRTYTSN  139 (271)
Q Consensus        89 a~~~~~l~~~~~~ipi-igii~~----------------------------~~~a~~~~~~~~VgiLAT~~Ti~s~~y~~  139 (271)
                      ......+-++....|+ +-+.|.                            .......-++|+|.|-|-.|++.|.+..+
T Consensus       190 ~~~~~~i~~~l~~~~~~v~~lP~~~~l~~~~~~lreI~ieDLLgR~pV~~d~~~i~~~~~gK~vLVTGagGSiGsel~~q  269 (588)
T COG1086         190 QEERRRILLRLARTGIAVRILPQLTDLKDLNGQLREIEIEDLLGRPPVALDTELIGAMLTGKTVLVTGGGGSIGSELCRQ  269 (588)
T ss_pred             HHHHHHHHHHHHHCCCCEEECCCHHHHHHHCCCCCCCCHHHHHCCCCCCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHH
T ss_conf             99999999998755970785574899987324654377989738999987879998670798899968987367999999


Q ss_pred             HHHHCCCC-CEEEECCCCCHHHHHHHHHHC----CC----CCHHHHHHHHHHHHHHHHCCCCCEEEE--CCCCHHHHHHH
Q ss_conf             98512788-579770564225787766426----77----697999999999846541058878998--05635889999
Q gi|254780905|r  140 LIHSYVSQ-CHIHLVSSMILASRVEEYACG----IK----IKEDEIKKEIEGCFIEKEGKRTDVIVL--ACTHYPLIVHV  208 (271)
Q Consensus       140 ~i~~~~~~-~~v~~~~~~~lv~~iE~~~~~----~~----~~~~~~~~~l~~~l~~~~~~~~D~iIL--GCTHyPll~~~  208 (271)
                      .+.. ++. +.+.....-.+- .++.....    .+    +.+-.-++.+...+   ...++|.+.=  +--|.|+....
T Consensus       270 il~~-~p~~i~l~~~~E~~~~-~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~---~~~kvd~VfHAAA~KHVPl~E~n  344 (588)
T COG1086         270 ILKF-NPKEIILFSRDEYKLY-LIDMELREKFPELKLRFYIGDVRDRDRVERAM---EGHKVDIVFHAAALKHVPLVEYN  344 (588)
T ss_pred             HHHC-CCCEEEEECCCHHHHH-HHHHHHHHHCCCCCEEEEECCCCCHHHHHHHH---HCCCCCEEEEHHHHCCCCCHHCC
T ss_conf             9854-9878999617637799-99999986278751689963534689999998---63888668875555368631018


Q ss_pred             HHHHC
Q ss_conf             99864
Q gi|254780905|r  209 FRQLS  213 (271)
Q Consensus       209 i~~~~  213 (271)
                      -.+..
T Consensus       345 P~Eai  349 (588)
T COG1086         345 PEEAI  349 (588)
T ss_pred             HHHHH
T ss_conf             89999


No 123
>pfam02112 PDEase_II cAMP phosphodiesterases class-II.
Probab=41.21  E-value=19  Score=16.63  Aligned_cols=23  Identities=13%  Similarity=0.192  Sum_probs=13.3

Q ss_pred             HHHHHHHHHHH-CCCCCEEEECCC
Q ss_conf             99999846541-058878998056
Q gi|254780905|r  178 KEIEGCFIEKE-GKRTDVIVLACT  200 (271)
Q Consensus       178 ~~l~~~l~~~~-~~~~D~iILGCT  200 (271)
                      ..+.+.+.+.. ..+..+|++=|.
T Consensus       216 ~~iW~~~Ap~I~~~kLk~I~IEcS  239 (323)
T pfam02112       216 LFIWSVIASLIKQNKLKAILIECS  239 (323)
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf             999999864421244478999967


No 124
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=41.00  E-value=22  Score=16.29  Aligned_cols=17  Identities=18%  Similarity=0.382  Sum_probs=8.2

Q ss_pred             HHHHHHHHCCCCCEEEE
Q ss_conf             99999986489978982
Q gi|254780905|r  205 IVHVFRQLSPWPVDWLD  221 (271)
Q Consensus       205 l~~~i~~~~~~~v~iID  221 (271)
                      +.+.+++..|..+.+.+
T Consensus       219 ILn~iqk~~~~~v~I~~  235 (356)
T COG4956         219 ILNEIQKEDPIQVEIYE  235 (356)
T ss_pred             HHHHHHHHCCCCEEECC
T ss_conf             99999863787389745


No 125
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=40.93  E-value=27  Score=15.62  Aligned_cols=107  Identities=13%  Similarity=0.014  Sum_probs=55.6

Q ss_pred             CCEEEE-ECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHH
Q ss_conf             870798-7791058999999996899989999415789898989899999999999998621698489971762026338
Q gi|254780905|r   14 NSILIF-DSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIK   92 (271)
Q Consensus        14 ~~Igif-DSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~   92 (271)
                      ..+||| |||+|==+++..+.+..-..-.||.+      -|+|.. |+.++..+...--+    .+. |+-++|++.-..
T Consensus       159 QR~gIf~g~GvGKt~Ll~~i~~~~~~dv~V~~l------IGeR~r-Ev~efie~~~~~~l----~~t-vvvvatsd~p~~  226 (435)
T PRK08472        159 QKLGIFAGSGVGKSTLMGMIVKGCLAPIKVVAL------IGERGR-EIPEFIEKNLGGDL----SNT-VIVVATSDDSPL  226 (435)
T ss_pred             CEEECCCCCCCCCCHHHHHHHHHHCCCEEEEEE------ECEEHH-HHHHHHHHHHHHCC----CCE-EEEEECCCCCHH
T ss_conf             665123589998335788887761599889976------131227-89999998741132----225-999846889989


Q ss_pred             HHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEECHHHHCCHHHHHH
Q ss_conf             999862577765445479999998407883299850677317016899
Q gi|254780905|r   93 DELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPATLRRTYTSNL  140 (271)
Q Consensus        93 ~~l~~~~~~ipiigii~~~~~a~~~~~~~~VgiLAT~~Ti~s~~y~~~  140 (271)
                      ..++.     |..++  ++.+-- ..+.++|.++-+.-|--...|.+.
T Consensus       227 ~r~~a-----~~~a~--aiAEyf-rd~G~~VLl~~Dsltr~A~A~REi  266 (435)
T PRK08472        227 MRKYG-----AFCAM--SVAEYF-KNQGLDVLFIMDSVTRFAMAQREI  266 (435)
T ss_pred             HHHHH-----HHHHH--HHHHHH-HHCCCCEEEEECCHHHHHHHHHHH
T ss_conf             99888-----88999--999999-867984899843627889999999


No 126
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=40.00  E-value=28  Score=15.53  Aligned_cols=66  Identities=12%  Similarity=0.240  Sum_probs=36.7

Q ss_pred             HHHHHHCCCCCEEEEECCCCCCCCCC--CHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf             99999689998999941578989898--989999999999999862169848997176202633899986257776544
Q gi|254780905|r   30 QKMRFLMPEYHFIYVADDVGFPYGNW--EDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLG  106 (271)
Q Consensus        30 ~~l~~~lP~~~~iY~~D~~~~PYG~k--s~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~~~~~ipiig  106 (271)
                      +..++-.|+. ++ ++   -+|||+-  |.++-.+    ...++++..|+++|=+-++.-..-....|.+.  +||+.|
T Consensus        70 ~aV~rg~~~~-~v-v~---DmPf~sy~~s~~~a~~----nA~rl~ke~gadaVKlEgg~~~~~~i~~l~~~--GIPV~g  137 (266)
T PRK00311         70 KAVRRGAPRA-LV-VA---DMPFGSYQASPEQALR----NAGRLMKEAGAHAVKLEGGEELAETIRRLVER--GIPVMG  137 (266)
T ss_pred             HHHHHCCCCC-EE-EE---CCCCCCCCCCHHHHHH----HHHHHHHHCCCCEEEECCCCCHHHHHHHHHHC--CCCEEE
T ss_conf             9998408885-39-95---7987646899999999----99999985699989978883367999999987--997665


No 127
>cd06330 PBP1_Arsenic_SBP_like Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea that is predicted to be involved in the efflux of toxic compounds.  Members of this subgroup include proteins from Herminiimonas arsenicoxydans, which is resistant to arsenic and various heavy metals such as cadmium and zinc. Moreover, they show significant sequence similarity to the cluster of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa.
Probab=39.85  E-value=28  Score=15.52  Aligned_cols=57  Identities=9%  Similarity=0.184  Sum_probs=35.8

Q ss_pred             CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCC
Q ss_conf             989999415789898989899999999999998621698489971762026338999862577765445
Q gi|254780905|r   39 YHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGA  107 (271)
Q Consensus        39 ~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~~~~~ipiigi  107 (271)
                      .++++. |+..-|          ....+..++|+++.++++|+=.+.|..+.+...+-++. .+|++..
T Consensus        41 velv~~-Dd~~~p----------~~a~~~a~~Li~~d~V~aiiG~~~S~~~~av~~~~~~~-~ip~i~~   97 (346)
T cd06330          41 IELVVR-DEAGKP----------DEAIREARELVENEGVDMLIGLISSGVALAVAPVAEEL-KVFFIAT   97 (346)
T ss_pred             EEEEEE-CCCCCH----------HHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHC-CCCEEEC
T ss_conf             899996-799998----------99999999999618966997787757789999999983-9857844


No 128
>TIGR00040 yfcE phosphodiesterase, MJ0936 family; InterPro: IPR000979   Members of this largely uncharacterised family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterised archaeal putative phosphoesterases. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown  to act on model phosphodiesterase substrates; a divalent cation was required. The following uncharacterised proteins are members of the fsmily: Escherichia coli hypothetical protein yfcE; Bacillus subtilis hypothetical protein ysnB; Mycoplasma genitalium and Mycoplasma pneumoniae hypothetical protein MG207; and M. jannaschii hypothetical proteins MJ0623 and MJ0936. .
Probab=39.73  E-value=11  Score=18.15  Aligned_cols=33  Identities=15%  Similarity=0.264  Sum_probs=26.5

Q ss_pred             CCCCCEEEECCCCHHHHHHHHHHHCCCCCEEEECHHHHH
Q ss_conf             058878998056358899999986489978982858999
Q gi|254780905|r  189 GKRTDVIVLACTHYPLIVHVFRQLSPWPVDWLDNSDSIA  227 (271)
Q Consensus       189 ~~~~D~iILGCTHyPll~~~i~~~~~~~v~iIDpa~~va  227 (271)
                      .-++|.||-|=||-|.+.+.      ..+.+|.|++-..
T Consensus       113 ~~~~DVli~GHTH~~~~e~~------~~~l~~NPGS~~~  145 (170)
T TIGR00040       113 ELGVDVLIFGHTHIPVAEEL------RGILLINPGSLTG  145 (170)
T ss_pred             HCCCEEEEECCCCEEEEEEC------CCEEEEECCEEEE
T ss_conf             62840899887140000112------7688881883364


No 129
>pfam03721 UDPG_MGDP_dh_N UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain. The UDP-glucose/GDP-mannose dehydrogenaseses are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate.
Probab=39.67  E-value=28  Score=15.50  Aligned_cols=150  Identities=15%  Similarity=0.120  Sum_probs=77.0

Q ss_pred             CEEEEECCCC--HHHHHHHHHHHCCCCCEEEEECC----------CCCCCCCCCHHHHHHHHHH-------HHHHHHHCC
Q ss_conf             7079877910--58999999996899989999415----------7898989898999999999-------999986216
Q gi|254780905|r   15 SILIFDSGIG--GLIVLQKMRFLMPEYHFIYVADD----------VGFPYGNWEDHALKKRLMF-------LFSDILDKY   75 (271)
Q Consensus        15 ~IgifDSGiG--GLtv~~~l~~~lP~~~~iY~~D~----------~~~PYG~ks~~~I~~~~~~-------~~~~ll~k~   75 (271)
                      .|+|+  |+|  ||+..-.+.+.--  + ++--|.          ...|+.+..-+++.+....       -....+  .
T Consensus         2 kI~Vi--GlGyVGl~~a~~la~~G~--~-V~g~D~d~~~v~~ln~g~~p~~E~~l~~~l~~~~~~~~~~~~~~~~~i--~   74 (185)
T pfam03721         2 RIAVI--GLGYVGLPTAVCLAEIGH--D-VVGVDINQSKIDKLNNGKIPIYEPGLEELLKANVSGRLRFTTDVAEAI--K   74 (185)
T ss_pred             EEEEE--CCCHHHHHHHHHHHHCCC--E-EEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCEEEECCHHHHH--H
T ss_conf             79998--978748999999994899--3-999979989999986268974675889999873408969987879988--4


Q ss_pred             CCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEECHHHHCCHHHHH----HHHHCC--CCCE
Q ss_conf             9848997176202633899986257776544547999999840788329985067731701689----985127--8857
Q gi|254780905|r   76 QPVLSVIACNTAFTLIKDELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPATLRRTYTSN----LIHSYV--SQCH  149 (271)
Q Consensus        76 ~~~~IVIACNTasa~~~~~l~~~~~~ipiigii~~~~~a~~~~~~~~VgiLAT~~Ti~s~~y~~----~i~~~~--~~~~  149 (271)
                      .++.++|+=+|.+.-      ..-+++  -.+..+++......+.+.+-|+  ..|+-=+.-++    .+++..  ....
T Consensus        75 ~~d~i~I~VpTP~~~------~~~~d~--s~l~~~~~~i~~~l~~~~liii--~STVppGtt~~~~~~l~~~~~~~~~~d  144 (185)
T pfam03721        75 EADVIFIAVPTPSKK------GGAPDL--TYVESAARTIGPVLKKGKVVVV--KSTVPPGTTEEVVKPILEKRSGKKAVD  144 (185)
T ss_pred             HCCEEEEECCCCCCC------CCCCCC--HHHHHHHHHHHHHCCCCCEEEE--ECCCCCCCHHHHHHHHHHHCCCCCCCC
T ss_conf             498999973687655------767663--5999999999744679989999--189998868999999999726677874


Q ss_pred             EEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCH
Q ss_conf             97705642257877664267769799999999984654105887899805635
Q gi|254780905|r  150 IHLVSSMILASRVEEYACGIKIKEDEIKKEIEGCFIEKEGKRTDVIVLACTHY  202 (271)
Q Consensus       150 v~~~~~~~lv~~iE~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~iILGCTHy  202 (271)
                      +...-||+++.  | |            ..+..      -.+++.+|.|||.=
T Consensus       145 ~~l~~~PErl~--~-G------------~a~~d------~~~~~riv~G~~~~  176 (185)
T pfam03721       145 FNVASNPEFLR--E-G------------NAIHD------LLNPDRVVIGVTEE  176 (185)
T ss_pred             EEEEECHHHCC--C-C------------CHHHH------CCCCCEEEEECCCH
T ss_conf             48987833236--6-4------------22333------16999799907808


No 130
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=39.33  E-value=29  Score=15.46  Aligned_cols=35  Identities=11%  Similarity=0.177  Sum_probs=27.8

Q ss_pred             CCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCH
Q ss_conf             7910589999999968999899994157898989898
Q gi|254780905|r   21 SGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWED   57 (271)
Q Consensus        21 SGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~   57 (271)
                      +|+-|+--+.+++...|..++|++  |+|.-|-.+|.
T Consensus        55 p~~ngiefaeQvr~i~~~v~iifI--ssh~eya~dsf   89 (361)
T COG3947          55 PYMNGIEFAEQVRDIESAVPIIFI--SSHAEYADDSF   89 (361)
T ss_pred             CCCCHHHHHHHHHHHHCCCCEEEE--ECCHHHHHHHC
T ss_conf             786087899999875314868999--63056523203


No 131
>PRK11678 putative chaperone; Provisional
Probab=39.15  E-value=29  Score=15.44  Aligned_cols=41  Identities=29%  Similarity=0.332  Sum_probs=27.5

Q ss_pred             CCCEEEE--CCCCHHHHHHHHHHHCCC-CCEEEECHHHHHHHHH
Q ss_conf             8878998--056358899999986489-9789828589999999
Q gi|254780905|r  191 RTDVIVL--ACTHYPLIVHVFRQLSPW-PVDWLDNSDSIARRAR  231 (271)
Q Consensus       191 ~~D~iIL--GCTHyPll~~~i~~~~~~-~v~iIDpa~~va~~~~  231 (271)
                      .+|.|+|  |-|-.|++++.+++.||. ++.-.||-.+||.=+.
T Consensus       399 ~~D~V~lvGGss~iP~Vr~~~~~~Fg~~~~~~~d~~~sVa~GlA  442 (450)
T PRK11678        399 KPDVIYLTGGSARSPLIRAALAQQLPGIPIVGGDDFGSVTAGLA  442 (450)
T ss_pred             CCCEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
T ss_conf             99989984863501899999999769997447798432988699


No 132
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Probab=39.10  E-value=29  Score=15.44  Aligned_cols=151  Identities=12%  Similarity=0.148  Sum_probs=65.6

Q ss_pred             CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCC----------
Q ss_conf             9899994157898989898999999999999986216984899717620263389998625777654454----------
Q gi|254780905|r   39 YHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGAV----------  108 (271)
Q Consensus        39 ~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~~~~~ipiigii----------  108 (271)
                      .+++ +.|++.-|          ..+....++|++. ++++|+-++.|..+.+.-.+-++. .+|++..-          
T Consensus        41 i~l~-~~D~~~~p----------~~a~~~a~~li~~-~v~aiiG~~~s~~~~a~~~~~~~~-~vp~is~~a~~~~l~~~~  107 (334)
T cd06342          41 LELV-VEDDQADP----------KQAVAVAQKLVDD-GVVGVVGHLNSGVTIPASPIYADA-GIVMISPAATNPKLTERG  107 (334)
T ss_pred             EEEE-EECCCCCH----------HHHHHHHHHHHHC-CCCEEECCCCHHHHHHHHHHHHHH-CCEEECCCCCCCCCCCCC
T ss_conf             8999-86899998----------9999999999976-984886466478788755789973-970303576785123479


Q ss_pred             --------H--------HHHHHHHHCCCCCEEEEECHHHHCC---HHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCC
Q ss_conf             --------7--------9999998407883299850677317---01689985127885797705642257877664267
Q gi|254780905|r  109 --------P--------AIKQAAAYTQSGLISILSTPATLRR---TYTSNLIHSYVSQCHIHLVSSMILASRVEEYACGI  169 (271)
Q Consensus       109 --------~--------~~~~a~~~~~~~~VgiLAT~~Ti~s---~~y~~~i~~~~~~~~v~~~~~~~lv~~iE~~~~~~  169 (271)
                              +        .++.+....+.++|+++.....-..   ..+++.+.+.+.++ +.....+            .
T Consensus       108 ~~~~fr~~~~~~~~~~~~~~~l~~~~~~~~vai~~~~~~~g~~~~~~~~~~l~~~g~~v-v~~~~~~------------~  174 (334)
T cd06342         108 YKNVFRVVARDDQQGPAAAKYAVETLKAKKVAIIDDKTAYGQGLADEFKKALKAAGGKV-VAREGTT------------D  174 (334)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCEE-EEEEECC------------C
T ss_conf             98289900887899999999999875996899991565544557999999999749839-9999658------------8


Q ss_pred             CCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCHH--HHHHHHHHHCCCCCEEEEC
Q ss_conf             7697999999999846541058878998056358--8999999864899789828
Q gi|254780905|r  170 KIKEDEIKKEIEGCFIEKEGKRTDVIVLACTHYP--LIVHVFRQLSPWPVDWLDN  222 (271)
Q Consensus       170 ~~~~~~~~~~l~~~l~~~~~~~~D~iILGCTHyP--ll~~~i~~~~~~~v~iIDp  222 (271)
                        ..    .-+...+..++..++|.|+++..+-.  .+...+++ .+.+.+++-+
T Consensus       175 --~~----~d~~~~i~~l~~~~~d~v~~~~~~~~~~~~~~~~~~-~g~~~~~~~~  222 (334)
T cd06342         175 --GA----TDFSAILTKIKAANPDAVFFGGYYPEAGPLVRQMRQ-LGLKAPFMGG  222 (334)
T ss_pred             --CC----CCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH-CCCCCEEEEE
T ss_conf             --76----665789999986599999992675589999999997-6999759996


No 133
>pfam01488 Shikimate_DH Shikimate / quinate 5-dehydrogenase. This family contains both shikimate and quinate dehydrogenases. Shikimate 5-dehydrogenase catalyses the conversion of shikimate to 5-dehydroshikimate. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites 3-dehydroquinate and dehydroshikimate.
Probab=38.86  E-value=29  Score=15.42  Aligned_cols=94  Identities=14%  Similarity=0.171  Sum_probs=42.2

Q ss_pred             HCCCCCEEEEECHHHHCCHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCC---CCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             407883299850677317016899851278857977056422578776642677---69799999999984654105887
Q gi|254780905|r  117 YTQSGLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYACGIK---IKEDEIKKEIEGCFIEKEGKRTD  193 (271)
Q Consensus       117 ~~~~~~VgiLAT~~Ti~s~~y~~~i~~~~~~~~v~~~~~~~lv~~iE~~~~~~~---~~~~~~~~~l~~~l~~~~~~~~D  193 (271)
                      ...++++.|+|+ |-+.+..-+.+..+...++.+....-.....+.++.- +..   ...+.    +..++     ..+|
T Consensus         9 ~l~~~~vlVIGa-G~~~~~~~~~L~~~g~~~i~v~nRt~~ka~~la~~~~-~~~~~~~~~~~----l~~~l-----~~~D   77 (134)
T pfam01488         9 DLKGKKVLLIGA-GEMARLAAKHLLSKGAKKITIANRTLEKAKELAEEFG-GEEVEALPLDE----LEELL-----AEAD   77 (134)
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCC-CCCEEEEECHH----HHHHH-----HHCC
T ss_conf             814898999996-0999999999997599889995475789999999849-97258985135----44136-----3199


Q ss_pred             EEEECCC---CHHHHHHHHHHHCCCCCEEEECH
Q ss_conf             8998056---35889999998648997898285
Q gi|254780905|r  194 VIVLACT---HYPLIVHVFRQLSPWPVDWLDNS  223 (271)
Q Consensus       194 ~iILGCT---HyPll~~~i~~~~~~~v~iIDpa  223 (271)
                      . |..||   ||-+-++.+++.. ++.-++|=+
T Consensus        78 i-vI~aT~s~~~ii~~~~~~~~~-~~~~iiDLa  108 (134)
T pfam01488        78 I-VISATSAPTPIITKEMVEEAL-KGLLFVDIA  108 (134)
T ss_pred             E-EEEECCCCCCEECHHHHHHCC-CCEEEEEEC
T ss_conf             9-999259997364899997443-985999834


No 134
>KOG2731 consensus
Probab=38.81  E-value=16  Score=17.20  Aligned_cols=15  Identities=20%  Similarity=0.217  Sum_probs=8.4

Q ss_pred             CCEEEECHHHHHHHH
Q ss_conf             978982858999999
Q gi|254780905|r  216 PVDWLDNSDSIARRA  230 (271)
Q Consensus       216 ~v~iIDpa~~va~~~  230 (271)
                      ++.++|+-.-++.+.
T Consensus       276 dv~im~Gfsrlv~ha  290 (378)
T KOG2731         276 DVVIMDGFSRLVEHA  290 (378)
T ss_pred             CEEEECCHHHHHHHC
T ss_conf             547633447887632


No 135
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=38.71  E-value=29  Score=15.40  Aligned_cols=71  Identities=25%  Similarity=0.199  Sum_probs=40.2

Q ss_pred             CCEEEE-ECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHH
Q ss_conf             870798-7791058999999996899989999415789898989899999999999998621698489971762026338
Q gi|254780905|r   14 NSILIF-DSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIK   92 (271)
Q Consensus        14 ~~Igif-DSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~   92 (271)
                      ..+||| +||+|= |++-...-+..+++++.+|=     -|+|..| +.++..    .++...+-+--|+-++|++...+
T Consensus       161 QRigIf~gsGvGK-S~Ll~~i~r~~~advvVi~l-----IGERgrE-v~efie----~~l~~~~~~rsvvV~atsd~~p~  229 (440)
T PRK08972        161 QRMGLFAGSGVGK-SVLLGMMTRGTTADVIVVGL-----VGERGRE-VKEFIE----EILGEEGRARSVVVAAPADTSPL  229 (440)
T ss_pred             CEEEECCCCCCCH-HHHHHHHHHCCCCCEEEEEE-----ECEEHHH-HHHHHH----HHHCCCCCEEEEEEEECCCCCHH
T ss_conf             4666315789758-99998887514787899986-----2313699-999999----98504774478999704888868


Q ss_pred             HHH
Q ss_conf             999
Q gi|254780905|r   93 DEL   95 (271)
Q Consensus        93 ~~l   95 (271)
                      ..+
T Consensus       230 ~R~  232 (440)
T PRK08972        230 MRL  232 (440)
T ss_pred             HHH
T ss_conf             899


No 136
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=38.67  E-value=29  Score=15.40  Aligned_cols=20  Identities=15%  Similarity=-0.004  Sum_probs=11.6

Q ss_pred             CCCEEEEECCCCCHHHHHHHH
Q ss_conf             984899717620263389998
Q gi|254780905|r   76 QPVLSVIACNTAFTLIKDELR   96 (271)
Q Consensus        76 ~~~~IVIACNTasa~~~~~l~   96 (271)
                      .+|.+|++= -++..+...|+
T Consensus        43 ~~d~LILPG-G~f~~~m~~L~   62 (196)
T PRK13527         43 DCDALIIPG-GESTTIGRLMK   62 (196)
T ss_pred             CCCEEEECC-CCHHHHHHHHH
T ss_conf             199799899-66799999988


No 137
>PRK09483 response regulator; Provisional
Probab=38.54  E-value=30  Score=15.38  Aligned_cols=104  Identities=10%  Similarity=0.054  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCC-------CHHHHHHHHHCCCCCEEEEECHHHHCCHH
Q ss_conf             99999998621698489971762026338999862577765445-------47999999840788329985067731701
Q gi|254780905|r   64 LMFLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGA-------VPAIKQAAAYTQSGLISILSTPATLRRTY  136 (271)
Q Consensus        64 ~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~~~~~ipiigi-------i~~~~~a~~~~~~~~VgiLAT~~Ti~s~~  136 (271)
                      +.+.+..++++...--+|-.|+|.. -+++.+++.-|++=++.+       ++.++........-+|-++....  ...+
T Consensus        13 ~r~gl~~~L~~~~~~~vv~~a~~~~-~~l~~~~~~~pDvvllDl~lp~~~Gl~~~~~i~~~~p~~~vivls~~~--~~~~   89 (216)
T PRK09483         13 VRAGIRRILEDIKGIKVVGEASCGE-DAVKWCRTNAVDVVLMDMNMPGIGGLEATRKILRSTPDVKIIMLTVHT--ENPL   89 (216)
T ss_pred             HHHHHHHHHHHCCCCEEEEEECCHH-HHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEECCCC--CHHH
T ss_conf             9999999997489958999989999-999999855999999868898987523778887408998578630566--3288


Q ss_pred             HHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCC
Q ss_conf             6899851278857977056422578776642677
Q gi|254780905|r  137 TSNLIHSYVSQCHIHLVSSMILASRVEEYACGIK  170 (271)
Q Consensus       137 y~~~i~~~~~~~~v~~~~~~~lv~~iE~~~~~~~  170 (271)
                      ..+++..-..+.-....+...+...|.....+..
T Consensus        90 ~~~al~~Ga~gyl~K~~~~~~l~~ai~~v~~G~~  123 (216)
T PRK09483         90 PAKVMQAGAAGYLSKGAAPQEVVSAIRSVHSGQR  123 (216)
T ss_pred             HHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCC
T ss_conf             9999974887899479999999999999985997


No 138
>PRK07594 type III secretion system ATPase; Validated
Probab=38.39  E-value=30  Score=15.37  Aligned_cols=106  Identities=15%  Similarity=0.164  Sum_probs=51.9

Q ss_pred             CCEEEE-ECCCCHHHHHHHHHHHCCCCCE-EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHH
Q ss_conf             870798-7791058999999996899989-99941578989898989999999999999862169848997176202633
Q gi|254780905|r   14 NSILIF-DSGIGGLIVLQKMRFLMPEYHF-IYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLI   91 (271)
Q Consensus        14 ~~Igif-DSGiGGLtv~~~l~~~lP~~~~-iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~   91 (271)
                      ..+||| |||+|=-|.+..+.+.. +.++ ||.+      -|+|..| +.++.    +.++...+-+--|+-++|+..-.
T Consensus       156 QR~gIfgg~GvGKTtLl~~i~~~~-~adv~V~~l------IGERgrE-v~efi----e~~~~~~~~~rsvvV~atsd~p~  223 (433)
T PRK07594        156 QRVGIFSAPGVGKSTLLAMLCNAP-DADSNVLVL------IGERGRE-VREFI----DFTLSEETRKRCVIVVATSDRPA  223 (433)
T ss_pred             CEEEECCCCCCCHHHHHHHHHHCC-CCCCEEEEE------ECCCHHH-HHHHH----HHHHHCCCCCEEEEEEECCCCCH
T ss_conf             874204789998558999998424-798159999------4100488-99999----98653366203899995588999


Q ss_pred             HHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEECHHHHCCHHHHH
Q ss_conf             899986257776544547999999840788329985067731701689
Q gi|254780905|r   92 KDELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPATLRRTYTSN  139 (271)
Q Consensus        92 ~~~l~~~~~~ipiigii~~~~~a~~~~~~~~VgiLAT~~Ti~s~~y~~  139 (271)
                      ...++.     |..++  ++.+- ...+.++|.++...-|--...|.+
T Consensus       224 ~~R~~a-----~~~a~--aiAEy-Frd~G~~VLl~~DslTR~A~A~RE  263 (433)
T PRK07594        224 LERVRA-----LFVAT--TIAEF-FRDNGKRVVLLADSLTRYARAARE  263 (433)
T ss_pred             HHHHHH-----HHHHH--HHHHH-HHHCCCEEEEEECCHHHHHHHHHH
T ss_conf             999999-----87766--78999-986696489973438889999878


No 139
>pfam06057 VirJ Bacterial virulence protein (VirJ). This family consists of several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localized to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium.
Probab=38.22  E-value=30  Score=15.35  Aligned_cols=70  Identities=14%  Similarity=0.201  Sum_probs=52.3

Q ss_pred             CCEEEEECCCCHH-----HHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf             8707987791058-----999999996899989999415789898989899999999999998621698489971762
Q gi|254780905|r   14 NSILIFDSGIGGL-----IVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNT   86 (271)
Q Consensus        14 ~~IgifDSGiGGL-----tv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNT   86 (271)
                      +...||=||=||.     +|..+|.+.  ...+|=+ |+.+.=+-.||++|.-.-...+++...++.+.+-+++.=-+
T Consensus         2 dtlav~~SGDGGW~~lD~~va~~L~~~--GvpVvGv-dSLrYFW~~ktP~q~a~Dl~~ii~~Y~~~w~~~~v~LiGYS   76 (192)
T pfam06057         2 DTVAVFYSGDGGWRDLDKEVGSALQKQ--GVPVVGV-DSLRYFWSERTPEEVADDLDRIIDTYRKRWKVKNVVLIGYS   76 (192)
T ss_pred             CEEEEEEECCCCHHHHHHHHHHHHHHC--CCCEEEE-CHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf             779999946887355519999999977--9836553-26888756599899999999999999998589659999617


No 140
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=38.00  E-value=30  Score=15.33  Aligned_cols=26  Identities=27%  Similarity=0.441  Sum_probs=17.5

Q ss_pred             CCCHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf             91058999999996899989999415
Q gi|254780905|r   22 GIGGLIVLQKMRFLMPEYHFIYVADD   47 (271)
Q Consensus        22 GiGGLtv~~~l~~~lP~~~~iY~~D~   47 (271)
                      +..||..+++|+++.|+..++-+...
T Consensus        52 ~~dGL~~~~~L~r~~P~vriLVLTm~   77 (205)
T PRK11475         52 RREGLSCLTELAIKFPRMRRLVIADD   77 (205)
T ss_pred             CCCHHHHHHHHHHHCCCCEEEEEECC
T ss_conf             97669999999997899718999747


No 141
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=37.95  E-value=30  Score=15.32  Aligned_cols=107  Identities=15%  Similarity=0.092  Sum_probs=53.5

Q ss_pred             CCEEEE-ECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHH
Q ss_conf             870798-7791058999999996899989999415789898989899999999999998621698489971762026338
Q gi|254780905|r   14 NSILIF-DSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIK   92 (271)
Q Consensus        14 ~~Igif-DSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~   92 (271)
                      ..+||| |||+|==+.+..|.+.. +.+++.++=     -|+|.+ |+.++..+    ++...+.+--|+-++|++....
T Consensus       156 QRigIfggsGvGKs~Ll~~I~r~~-~advvVi~l-----IGeRgr-Ev~efi~~----~~~~~~l~~svvv~atsd~~p~  224 (434)
T PRK07196        156 QRVGLMAGSGVGKSVLLGMITRYT-QADVVVVGL-----IGERGR-EVKEFIEH----SLQAAGMAKSVVVAAPADESPL  224 (434)
T ss_pred             CEEEECCCCCCCHHHHHHHHHHHH-CCCEEEEEE-----CCEEHH-HHHHHHHH----HHHCCCCCEEEEEEECCCCCHH
T ss_conf             242101478997899999998973-799899974-----222349-99999998----7424674326999845889878


Q ss_pred             HHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEECHHHHCCHHHHH
Q ss_conf             99986257776544547999999840788329985067731701689
Q gi|254780905|r   93 DELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPATLRRTYTSN  139 (271)
Q Consensus        93 ~~l~~~~~~ipiigii~~~~~a~~~~~~~~VgiLAT~~Ti~s~~y~~  139 (271)
                      ..++.     |..++  ++.+.- ..+.++|.++.+.-|--...+.+
T Consensus       225 ~r~~a-----~~~a~--aiAEyf-rd~G~~VLl~~Dsltr~A~A~RE  263 (434)
T PRK07196        225 MRIKA-----TELCH--AIATYY-RDKGHDVLLLVDSLTRYAMAQRE  263 (434)
T ss_pred             HHHHH-----HHHHH--HHHHHH-HHCCCCEEEEECCHHHHHHHHHH
T ss_conf             88899-----98899--899999-86798569995474688999999


No 142
>PRK01132 consensus
Probab=37.84  E-value=30  Score=15.31  Aligned_cols=55  Identities=7%  Similarity=-0.058  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHCC------------CCCEEEECHHHHHHHHHHH
Q ss_conf             999984654105887899805635889999998648------------9978982858999999999
Q gi|254780905|r  179 EIEGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSP------------WPVDWLDNSDSIARRARCL  233 (271)
Q Consensus       179 ~l~~~l~~~~~~~~D~iILGCTHyPll~~~i~~~~~------------~~v~iIDpa~~va~~~~~~  233 (271)
                      .+.+....++.+|+..+..-|||--|..+.++++..            .++.-||=+..+|..+++.
T Consensus       218 Tl~~aa~~Lk~~GA~~V~a~~THglfs~~A~~ri~~~~~~iv~TdTi~~~~s~isva~~ia~~l~~~  284 (286)
T PRK01132        218 TIAKSSRILRDKGASKIYVSAVHGLFVNNSEAKILENADEIHVTDTVETKFSDISVYQDVCNYIEKK  284 (286)
T ss_pred             HHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHCCCEEEECCCCCCCCCEEEEHHHHHHHHHHH
T ss_conf             9999999999879984999996820671699998806998999189779887046679999999875


No 143
>COG0155 CysI Sulfite reductase, beta subunit (hemoprotein) [Inorganic ion transport and metabolism]
Probab=37.80  E-value=17  Score=16.96  Aligned_cols=74  Identities=14%  Similarity=0.127  Sum_probs=38.3

Q ss_pred             CCCEEE---ECCCCHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHCCCCCCCCCCCEEEEE-CCCHHHHHHHHHHH
Q ss_conf             887899---80563588999999864899789828589999999998642733457788779996-69979999999985
Q gi|254780905|r  191 RTDVIV---LACTHYPLIVHVFRQLSPWPVDWLDNSDSIARRARCLLPRINTHQTRVFDDHALFL-SGKPDIAMRRLMQG  266 (271)
Q Consensus       191 ~~D~iI---LGCTHyPll~~~i~~~~~~~v~iIDpa~~va~~~~~~L~~~~~~~~~~~~~~~f~~-T~~~~~~~~~~~~~  266 (271)
                      +...+|   ||+|| |-+...+.+.+|.     +-.-.+++.+.....+..........+.++.+ .-..|.|.+.+...
T Consensus       204 Gf~v~VGGglg~~~-~~~~~~~~~~v~~-----~~~~~~~~aiv~~~~d~G~R~nr~~aR~k~lv~~~G~E~f~~~ve~~  277 (510)
T COG0155         204 GFNVLVGGGLGRTH-PKTAPRLAEFVPP-----EDVLEVVEAIVRVYRDYGRRANRKKARLKYLVEALGVEKFRREVEPR  277 (510)
T ss_pred             CEEEEECCCCCCCC-CCHHHHHHHCCCH-----HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_conf             51789855246677-4145677631688-----88999999999999750334454433589899873759899998886


Q ss_pred             CCCC
Q ss_conf             6888
Q gi|254780905|r  267 FGLK  270 (271)
Q Consensus       267 ~G~~  270 (271)
                      ||.+
T Consensus       278 ~g~~  281 (510)
T COG0155         278 LGKP  281 (510)
T ss_pred             HCCC
T ss_conf             4766


No 144
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=37.35  E-value=31  Score=15.26  Aligned_cols=56  Identities=14%  Similarity=0.281  Sum_probs=33.6

Q ss_pred             CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf             98999941578989898989999999999999862169848997176202633899986257776544
Q gi|254780905|r   39 YHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLG  106 (271)
Q Consensus        39 ~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~~~~~ipiig  106 (271)
                      .++++ .|++.-|          +.......+|+++.++.+|+=+++|..+.+...+-++. .+|+|.
T Consensus        45 ielv~-~D~~~~p----------~~a~~~a~~Li~~d~V~~viG~~~S~~~~a~~~~~~~~-~ip~i~  100 (345)
T cd06338          45 VELIY-YDDQSNP----------ARAARAYERLITQDKVDFLLGPYSSGLTLAAAPVAEKY-GVPMVA  100 (345)
T ss_pred             EEEEE-ECCCCCH----------HHHHHHHHHHHHCCCCEEEECCCCHHHHHCCCHHHHHC-CCEEEC
T ss_conf             89998-6799998----------99999999999618953997686614320010378871-966625


No 145
>PRK13171 consensus
Probab=37.33  E-value=31  Score=15.26  Aligned_cols=22  Identities=23%  Similarity=0.317  Sum_probs=16.9

Q ss_pred             CCEEEEECCCCHH-HHHHHHHHH
Q ss_conf             8707987791058-999999996
Q gi|254780905|r   14 NSILIFDSGIGGL-IVLQKMRFL   35 (271)
Q Consensus        14 ~~IgifDSGiGGL-tv~~~l~~~   35 (271)
                      ..|||.|-|+|-+ ||.+++.+.
T Consensus         2 ~~I~IiDyg~gNi~Sv~~al~~l   24 (200)
T PRK13171          2 TDVALIDAGGANLGSVRYALERL   24 (200)
T ss_pred             CEEEEEECCCCHHHHHHHHHHHC
T ss_conf             87999968951799999999984


No 146
>PRK11544 hycI hydrogenase 3 maturation protease; Provisional
Probab=37.05  E-value=21  Score=16.35  Aligned_cols=33  Identities=24%  Similarity=0.013  Sum_probs=17.7

Q ss_pred             CCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCHHH
Q ss_conf             84899717620263389998625777654454799
Q gi|254780905|r   77 PVLSVIACNTAFTLIKDELRSTFPSMAFLGAVPAI  111 (271)
Q Consensus        77 ~~~IVIACNTasa~~~~~l~~~~~~ipiigii~~~  111 (271)
                      ....||=|-|+--..+..+++.-|+.  +=+++|+
T Consensus        32 ~~~~vidgGt~pe~~~~~i~~~~p~~--iIiVDA~   64 (156)
T PRK11544         32 GGWVVIDGGSAPENDIVAIRELRPTR--LLIVDAT   64 (156)
T ss_pred             CCEEEEECCCCHHHHHHHHHCCCCCE--EEEEECH
T ss_conf             98499979888699999987018997--9999714


No 147
>PRK10403 transcriptional regulator NarP; Provisional
Probab=37.03  E-value=31  Score=15.23  Aligned_cols=15  Identities=20%  Similarity=0.592  Sum_probs=7.9

Q ss_pred             HHHHHHHHHHCCCCC
Q ss_conf             999999998568889
Q gi|254780905|r  257 DIAMRRLMQGFGLKS  271 (271)
Q Consensus       257 ~~~~~~~~~~~G~~~  271 (271)
                      +...+++.+.+|.+|
T Consensus       186 ~~h~~~I~~KLgv~n  200 (215)
T PRK10403        186 KVHIRNLLRKLNVRS  200 (215)
T ss_pred             HHHHHHHHHHHCCCC
T ss_conf             999999999868998


No 148
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=35.96  E-value=32  Score=15.12  Aligned_cols=139  Identities=9%  Similarity=0.072  Sum_probs=71.6

Q ss_pred             HHHHHHHHCC-----CCCEEEEECCCCCCCCC-CCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCC
Q ss_conf             9999999689-----99899994157898989-89899999999999998621698489971762026338999862577
Q gi|254780905|r   28 VLQKMRFLMP-----EYHFIYVADDVGFPYGN-WEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPS  101 (271)
Q Consensus        28 v~~~l~~~lP-----~~~~iY~~D~~~~PYG~-ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~~~~~  101 (271)
                      +++.+.+.+.     +.+++-+.|-. .|+.. ...++...-+.+..+.. +  .+|.+|+++-.=+...--.+++-   
T Consensus        18 l~~~v~~~l~~~~g~ev~~idL~dl~-~~l~~~~~~~~~~~~~~~~~~~V-~--~AD~lIiaTP~Y~gSysG~lKn~---   90 (174)
T TIGR03566        18 LVEALVAELAARLGISPRTIDLADLA-PSLGGALWRSQLPPDAERILQAI-E--SADLLVVGSPVYRGSYTGLFKHL---   90 (174)
T ss_pred             HHHHHHHHHHHHCCCEEEEEECCCCC-CCCCCCCCCCCCCHHHHHHHHHH-H--HCCEEEEECCCCCCCCCHHHHHH---
T ss_conf             99999999888759818998622378-12155400135899999999999-8--67968997563277776899999---


Q ss_pred             CCCCCCCHHHHHHHHHCCCCCEEEEECHHHHCCHH---HH-H-HHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCCHHHH
Q ss_conf             76544547999999840788329985067731701---68-9-9851278857977056422578776642677697999
Q gi|254780905|r  102 MAFLGAVPAIKQAAAYTQSGLISILSTPATLRRTY---TS-N-LIHSYVSQCHIHLVSSMILASRVEEYACGIKIKEDEI  176 (271)
Q Consensus       102 ipiigii~~~~~a~~~~~~~~VgiLAT~~Ti~s~~---y~-~-~i~~~~~~~~v~~~~~~~lv~~iE~~~~~~~~~~~~~  176 (271)
                      ++.++.        .....|.|+++||-|+.+...   |+ + .+..++.    +..+...++  ..+.+.++.+.++.+
T Consensus        91 lD~l~~--------~al~gKpv~l~atgGs~~h~l~~e~~Lrpvl~~l~a----~~vp~~Vfa--~~~d~~~~~i~~~~~  156 (174)
T TIGR03566        91 FDLVDP--------NALIGKPVLLAATGGSERHALMVEHQLRPLFGFFQA----LTLPTGVYA--SDADFADYRLASEAL  156 (174)
T ss_pred             HHHCCH--------HHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCC----EECCCEEEE--CHHHCCCCCCCCHHH
T ss_conf             994698--------886798599997168620147788889999998484----865743672--142215675158899


Q ss_pred             HHHHHHHHHHH
Q ss_conf             99999984654
Q gi|254780905|r  177 KKEIEGCFIEK  187 (271)
Q Consensus       177 ~~~l~~~l~~~  187 (271)
                      ++.++....++
T Consensus       157 ~~Ri~~~~~e~  167 (174)
T TIGR03566       157 RARIALAVDRA  167 (174)
T ss_pred             HHHHHHHHHHH
T ss_conf             99999999999


No 149
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=35.65  E-value=33  Score=15.09  Aligned_cols=69  Identities=22%  Similarity=0.188  Sum_probs=37.2

Q ss_pred             CCEEEE-ECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHH
Q ss_conf             870798-7791058999999996899989999415789898989899999999999998621698489971762026338
Q gi|254780905|r   14 NSILIF-DSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIK   92 (271)
Q Consensus        14 ~~Igif-DSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~   92 (271)
                      ..+||| |||+|==+.+..+.+. .+.+++-++=     -|+|.+| +.++..    .++...+.+--|+-++|++...+
T Consensus       176 QRigIfagsGvGKs~Ll~~iar~-~~adv~Vi~l-----IGERgrE-v~efi~----~~l~~~~~~rsvvv~atsd~~p~  244 (455)
T PRK07960        176 QRMGLFAGSGVGKSVLLGMMARY-TRADVIVVGL-----IGERGRE-VKDFIE----NILGAEGRARSVVIAAPADVSPL  244 (455)
T ss_pred             CEEECCCCCCCCHHHHHHHHHHH-HCCCEEEEEE-----ECEEHHH-HHHHHH----HHHCCCCCCCEEEEEECCCCCHH
T ss_conf             77632489988499999999886-0898589972-----0406289-999999----97514774212799842666848


Q ss_pred             H
Q ss_conf             9
Q gi|254780905|r   93 D   93 (271)
Q Consensus        93 ~   93 (271)
                      .
T Consensus       245 ~  245 (455)
T PRK07960        245 L  245 (455)
T ss_pred             H
T ss_conf             8


No 150
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=35.52  E-value=33  Score=15.07  Aligned_cols=108  Identities=18%  Similarity=0.106  Sum_probs=58.0

Q ss_pred             CCEEEE-ECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHH
Q ss_conf             870798-7791058999999996899989999415789898989899999999999998621698489971762026338
Q gi|254780905|r   14 NSILIF-DSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIK   92 (271)
Q Consensus        14 ~~Igif-DSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~   92 (271)
                      ..+||| +||+|=-+.+..+.+.. +.+++.+|=     -|+|.. |+.++..+    ++...+-+--|+-+||++.-..
T Consensus       141 QRigIfgg~GvGKt~Ll~~i~~~~-~adv~V~al-----iGeRgr-Ev~efi~~----~~~~~~l~~tvvv~atsd~p~~  209 (418)
T TIGR03498       141 QRLGIFAGSGVGKSTLLSMLARNT-DADVVVIAL-----VGERGR-EVREFLED----DLGEEGLKRSVVVVATSDESPL  209 (418)
T ss_pred             CEEECCCCCCCCHHHHHHHHHHHC-CCCEEEEEE-----EEEEHH-HHHHHHHH----HHHCCCCCCEEEEEECCCCCHH
T ss_conf             664113789998889999998750-798689988-----302689-99999998----6531564426999944889878


Q ss_pred             HHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEECHHHHCCHHHHHH
Q ss_conf             999862577765445479999998407883299850677317016899
Q gi|254780905|r   93 DELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPATLRRTYTSNL  140 (271)
Q Consensus        93 ~~l~~~~~~ipiigii~~~~~a~~~~~~~~VgiLAT~~Ti~s~~y~~~  140 (271)
                      ..++.     |..++  ++.+.- ..+.++|.++.+.-|--...|.+.
T Consensus       210 ~R~~a-----~~~a~--aiAEyF-rd~G~~VLl~~Dsltr~A~A~REi  249 (418)
T TIGR03498       210 MRRQA-----AYTAT--AIAEYF-RDQGKDVLLLMDSVTRFAMAQREI  249 (418)
T ss_pred             HHHHH-----HHHHH--HHHHHH-HHCCCCEEEEECCHHHHHHHHHHH
T ss_conf             88888-----87877--899999-867983899955725889999999


No 151
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=35.32  E-value=33  Score=15.05  Aligned_cols=68  Identities=13%  Similarity=0.110  Sum_probs=48.4

Q ss_pred             CCEEEEECCCCH-H-HHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC
Q ss_conf             870798779105-8-99999999689998999941578989898989999999999999862169848997176202
Q gi|254780905|r   14 NSILIFDSGIGG-L-IVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAF   88 (271)
Q Consensus        14 ~~IgifDSGiGG-L-tv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTas   88 (271)
                      +.|||.-|=-|- + -|++-+.++.|..+++++  ..-+ =|+...++|.+    .+..+.+...+|.+++|=---|
T Consensus       136 ~~IGVITS~tgAairDIl~~~~rR~P~~~viv~--pt~V-QG~~A~~eIv~----aI~~an~~~~~DvlIVaRGGGS  205 (440)
T COG1570         136 KKIGVITSPTGAALRDILHTLSRRFPSVEVIVY--PTLV-QGEGAAEEIVE----AIERANQRGDVDVLIVARGGGS  205 (440)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEE--ECCC-CCCCCHHHHHH----HHHHHHCCCCCCEEEEECCCCH
T ss_conf             868998187058999999998753888729998--2144-17870999999----9998634589988999168634


No 152
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=35.29  E-value=24  Score=15.99  Aligned_cols=20  Identities=35%  Similarity=0.343  Sum_probs=12.9

Q ss_pred             CEEEEECHHHHCCHHHHHHH
Q ss_conf             32998506773170168998
Q gi|254780905|r  122 LISILSTPATLRRTYTSNLI  141 (271)
Q Consensus       122 ~VgiLAT~~Ti~s~~y~~~i  141 (271)
                      +|+|-|||||=|+..-..+-
T Consensus         2 ~I~ITGTPGvGKTT~~~~L~   21 (180)
T COG1936           2 LIAITGTPGVGKTTVCKLLR   21 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHH
T ss_conf             37993799986687999999


No 153
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=34.81  E-value=34  Score=15.00  Aligned_cols=190  Identities=13%  Similarity=0.087  Sum_probs=95.1

Q ss_pred             HHHHHHHCCCCCEEEEECCCCCCCC--CC---CHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCC
Q ss_conf             9999996899989999415789898--98---989999999999999862169848997176202633899986257776
Q gi|254780905|r   29 LQKMRFLMPEYHFIYVADDVGFPYG--NW---EDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMA  103 (271)
Q Consensus        29 ~~~l~~~lP~~~~iY~~D~~~~PYG--~k---s~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~~~~~ip  103 (271)
                      ..+++ +.-..++.-+  -=++||.  +|   +.+-|   +.+.+..+++..|++-+ +..+- |+   +.++.-| ++|
T Consensus        80 idA~r-~agA~~It~V--iPY~~YaRQDr~~~~gepI---sak~vA~lL~~~G~d~v-itvDl-H~---~~i~gfF-~ip  147 (323)
T PRK02458         80 IDACK-RASANTVNVV--LPYFGYARQDRIAKPREPI---TAKLVANMLVKAGVDRV-LTLDL-HA---VQVQGFF-DIP  147 (323)
T ss_pred             HHHHH-HCCCCEEEEE--ECCCCCCCCCCCCCCCCCC---CHHHHHHHHHHCCCCEE-EEECC-CC---HHHHHCC-CCC
T ss_conf             99998-7388718998--3246545477665899874---19999999875388657-88427-81---8774046-897


Q ss_pred             CCCCC--HHHHHHHHHC--CCCCEEEEECH-HHH-CCHHHHHHHHHCCCCCEEE--ECC-----CCCHHHHHHHHHHCCC
Q ss_conf             54454--7999999840--78832998506-773-1701689985127885797--705-----6422578776642677
Q gi|254780905|r  104 FLGAV--PAIKQAAAYT--QSGLISILSTP-ATL-RRTYTSNLIHSYVSQCHIH--LVS-----SMILASRVEEYACGIK  170 (271)
Q Consensus       104 iigii--~~~~~a~~~~--~~~~VgiLAT~-~Ti-~s~~y~~~i~~~~~~~~v~--~~~-----~~~lv~~iE~~~~~~~  170 (271)
                      +.++.  |.........  ....+-|++-. +-+ +...+.+.+.   ....+.  ...     ...++..++.. .. -
T Consensus       148 v~nl~a~~~~~~~~~~~~~~~~~~vvVsPD~G~~~ra~~~A~~L~---~~~~~i~k~r~~~~~~~~~ivgdV~Gr-~v-I  222 (323)
T PRK02458        148 VDNLFTVPLFAEHYSKLGLSGSDVVVVSPKNSGIKRARSLAEYLD---SPIAIIDYAQDDSEREEGYIIGDVSGK-KA-I  222 (323)
T ss_pred             CCEEEEEHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHC---CCEEEEEEECCCCCCCEEEECCCCCCC-EE-E
T ss_conf             234771099999999837997670897578305688999998605---871379862168974122313666896-67-8


Q ss_pred             CCHHHH--HHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHC-------------------CCCCEEEECHHHHHHH
Q ss_conf             697999--9999998465410588789980563588999999864-------------------8997898285899999
Q gi|254780905|r  171 IKEDEI--KKEIEGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLS-------------------PWPVDWLDNSDSIARR  229 (271)
Q Consensus       171 ~~~~~~--~~~l~~~l~~~~~~~~D~iILGCTHyPll~~~i~~~~-------------------~~~v~iIDpa~~va~~  229 (271)
                      +-++.+  -..+......++..|+..+...|||--|-.+..+++.                   +++++++|-+.-+|+.
T Consensus       223 IVDDiIdTGgTl~~aa~~Lk~~GA~~V~~~~THglfs~~A~~rl~~s~i~~ivvTnTi~~~~~~~~ki~vlsva~llAea  302 (323)
T PRK02458        223 LIDDILNTGKTFAEAAKILERSGATEIYAVASHGLFAGGAAEVLETAPIKEILVTDSVKTKERVPKNVTYLSASELIAEA  302 (323)
T ss_pred             EECCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHCCCCCEEEECCCCCCHHHCCCCCEEEEHHHHHHHH
T ss_conf             76202322488999999999649976899997642570799998649986899858978722448988898779999999


Q ss_pred             HHHHHH
Q ss_conf             999986
Q gi|254780905|r  230 ARCLLP  235 (271)
Q Consensus       230 ~~~~L~  235 (271)
                      +.++-.
T Consensus       303 I~rih~  308 (323)
T PRK02458        303 IIRIHE  308 (323)
T ss_pred             HHHHHC
T ss_conf             999867


No 154
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase; InterPro: IPR011183    Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyses the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (2.7.1.90 from EC). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes . IPR012828 from INTERPRO represents the ATP-dependent 6-phosphofructokinase enzyme contained within Phosphofructokinase. This entry contains primarily bacterial, plant alpha, and plant beta sequences. These may be dimeric nonallosteric enzymes (bacteria) or allosteric heterotetramers (plants) .   For additional information please see , , , .; GO: 0005524 ATP binding, 0047334 diphosphate-fructose-6-phosphate 1-phosphotransferase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex.
Probab=34.56  E-value=34  Score=14.97  Aligned_cols=94  Identities=17%  Similarity=0.239  Sum_probs=54.9

Q ss_pred             CCCEEEEECC---CCHHH----HHHHHHHHCCC---------------CCEEEEECCCCCCC---------C-----CCC
Q ss_conf             8870798779---10589----99999996899---------------98999941578989---------8-----989
Q gi|254780905|r   13 QNSILIFDSG---IGGLI----VLQKMRFLMPE---------------YHFIYVADDVGFPY---------G-----NWE   56 (271)
Q Consensus        13 ~~~IgifDSG---iGGLt----v~~~l~~~lP~---------------~~~iY~~D~~~~PY---------G-----~ks   56 (271)
                      .-.|||.=||   =||==    .+..|++..|+               .+++=+-+.-=-+|         |     -+|
T Consensus        74 ~l~~GviLSGGqAPGGHNVi~GLFD~lk~~np~SkLyGF~~Gp~GL~~~~~~elT~~~i~~YRN~GGFD~iGSGRtKI~T  153 (566)
T TIGR02477        74 PLKVGVILSGGQAPGGHNVISGLFDALKKLNPESKLYGFLGGPEGLLDNNYVELTKELIDEYRNTGGFDIIGSGRTKIET  153 (566)
T ss_pred             CCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECHHHHHCCCCCCCEEEECCCCCCCCC
T ss_conf             75688987579897711467778999997377672001020744431587157637887222788774200168545568


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCEEEEE---CCCCCHHHHHHHHHHCCCCCCCCCCHH
Q ss_conf             899999999999998621698489971---762026338999862577765445479
Q gi|254780905|r   57 DHALKKRLMFLFSDILDKYQPVLSVIA---CNTAFTLIKDELRSTFPSMAFLGAVPA  110 (271)
Q Consensus        57 ~~~I~~~~~~~~~~ll~k~~~~~IVIA---CNTasa~~~~~l~~~~~~ipiigii~~  110 (271)
                      +|+. +.+++.+..+  +. --+|||.   .||..|...+...++-.+++||||-..
T Consensus       154 ~Eq~-~~al~~~k~l--~L-dgLVIIGGDdSNTnAA~LAEyF~~~~~~t~viGVPKT  206 (566)
T TIGR02477       154 EEQF-AKALETAKKL--KL-DGLVIIGGDDSNTNAALLAEYFAKKGLKTQVIGVPKT  206 (566)
T ss_pred             HHHH-HHHHHHHHHH--CC-CEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf             8899-9999998760--89-6489974798679999999999973899227864025


No 155
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=34.16  E-value=35  Score=14.93  Aligned_cols=121  Identities=13%  Similarity=0.105  Sum_probs=60.5

Q ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHH----H-HHHHHHCCCCCEEEEEC
Q ss_conf             634887079877910589999999968999899994157898989898999999999----9-99986216984899717
Q gi|254780905|r   10 KKLQNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMF----L-FSDILDKYQPVLSVIAC   84 (271)
Q Consensus        10 ~~~~~~IgifDSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~----~-~~~ll~k~~~~~IVIAC   84 (271)
                      +-.++.|+|+--|.-|+++++.|.+.   ...+.+-|....      .+...+....    . -+..+  .++++||+.=
T Consensus         3 ~~~~K~v~V~GlG~sG~a~~~~L~~~---~~~~~~dd~~~~------~~~~~~~~~~~~~~~~~~~~~--~~~d~iV~SP   71 (450)
T PRK01368          3 SHTKQKIGVFGLGKTGISVYEELQNK---YDLIVYDDLKAN------RDIFEELFSKNAIIALSDSRW--QNLDKIVLSP   71 (450)
T ss_pred             CCCCCEEEEEEECHHHHHHHHHHHHC---CCEEEEECCCCC------HHHHHHHHCCCCEECCCCCCH--HCCCEEEECC
T ss_conf             66899089995878799999999719---998999899656------478997521483602571115--2199999899


Q ss_pred             CCC-CHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCC-CCEEEEECHH--HHCCHHHHHHHHHCCCC
Q ss_conf             620-263389998625777654454799999984078-8329985067--73170168998512788
Q gi|254780905|r   85 NTA-FTLIKDELRSTFPSMAFLGAVPAIKQAAAYTQS-GLISILSTPA--TLRRTYTSNLIHSYVSQ  147 (271)
Q Consensus        85 NTa-sa~~~~~l~~~~~~ipiigii~~~~~a~~~~~~-~~VgiLAT~~--Ti~s~~y~~~i~~~~~~  147 (271)
                      -=. +.-.+...+++  ++||++=++-   +....+. +-|||=||.|  |.. ......+.+.+.+
T Consensus        72 GI~~~~p~~~~a~~~--~i~i~~eiel---~~~~~~~~~~IaITGTnGKTTTt-~li~~iL~~~g~~  132 (450)
T PRK01368         72 GIPLTHEIVKIAKNF--NIPITSDIDL---LFEKSKNLKFIAITGTNGKSTTT-ALISHILNSNGLD  132 (450)
T ss_pred             CCCCCCHHHHHHHHC--CCCEEEHHHH---HHHHCCCCCEEEEECCCCCHHHH-HHHHHHHHHCCCC
T ss_conf             619989999999987--9958769999---99766799779996899974899-9999999975996


No 156
>COG3946 VirJ Type IV secretory pathway, VirJ component [Intracellular trafficking and secretion]
Probab=33.22  E-value=36  Score=14.83  Aligned_cols=81  Identities=12%  Similarity=0.183  Sum_probs=54.8

Q ss_pred             CCCCCCCCCCCEEEEECCCCHHH-HHHHHHHHCC--CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf             43344634887079877910589-9999999689--99899994157898989898999999999999986216984899
Q gi|254780905|r    5 NYPCEKKLQNSILIFDSGIGGLI-VLQKMRFLMP--EYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSV   81 (271)
Q Consensus         5 ~~~~~~~~~~~IgifDSGiGGLt-v~~~l~~~lP--~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IV   81 (271)
                      .+|+..+..+...||=||=||-- +=|++-+.|-  ...+|=+ |+.|.=|-+|++|++-.-...++.+--.+.+.+-++
T Consensus       251 e~~a~~~~sd~~av~~SGDGGWr~lDk~v~~~l~~~gvpVvGv-dsLRYfW~~rtPe~~a~Dl~r~i~~y~~~w~~~~~~  329 (456)
T COG3946         251 EVPAKPGNSDTVAVFYSGDGGWRDLDKEVAEALQKQGVPVVGV-DSLRYFWSERTPEQIAADLSRLIRFYARRWGAKRVL  329 (456)
T ss_pred             EECCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEE-EHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEEE
T ss_conf             4336788765699998368736564499999999779955643-002355156897888777999999998863764389


Q ss_pred             EECCC
Q ss_conf             71762
Q gi|254780905|r   82 IACNT   86 (271)
Q Consensus        82 IACNT   86 (271)
                      +.--+
T Consensus       330 liGyS  334 (456)
T COG3946         330 LIGYS  334 (456)
T ss_pred             EEEEC
T ss_conf             99604


No 157
>PTZ00318 NADH dehydrogenase; Provisional
Probab=33.10  E-value=29  Score=15.39  Aligned_cols=58  Identities=10%  Similarity=0.278  Sum_probs=34.8

Q ss_pred             CCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCC-CCC---------CCCCHHHHHHHHHHH
Q ss_conf             3446348870798779105899999999689998999941578-989---------898989999999999
Q gi|254780905|r    7 PCEKKLQNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVG-FPY---------GNWEDHALKKRLMFL   67 (271)
Q Consensus         7 ~~~~~~~~~IgifDSGiGGLtv~~~l~~~lP~~~~iY~~D~~~-~PY---------G~ks~~~I~~~~~~~   67 (271)
                      |.-.-+++.|.|.-+|-|||+.+++|.+.+.  +++-+ |.-| +=|         |.-+...|..-...+
T Consensus         4 ~~~~~~KprVVIlGgGfaGl~~ak~L~~~~~--~VtLV-dp~ny~lF~PLL~qvAtGtLe~r~I~~Pir~i   71 (514)
T PTZ00318          4 PTHRLLKPNVVVVGTGWAGCYFARHLNPKLA--NLHVL-STRNHMVFTPLLPQTTTGTLEFRSVCEPITRI   71 (514)
T ss_pred             CCCCCCCCEEEEECCCHHHHHHHHHHCCCCC--CEEEE-CCCCCCCCCHHHHHHHHCCCCHHHEECCHHHH
T ss_conf             8866788858999976999999997386898--28999-99998501021676620577757722217887


No 158
>TIGR02708 L_lactate_ox L-lactate oxidase; InterPro: IPR014080   Members of this entry oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence..
Probab=33.01  E-value=36  Score=14.81  Aligned_cols=15  Identities=27%  Similarity=0.525  Sum_probs=5.9

Q ss_pred             HHHCCCCCEEEEECC
Q ss_conf             996899989999415
Q gi|254780905|r   33 RFLMPEYHFIYVADD   47 (271)
Q Consensus        33 ~~~lP~~~~iY~~D~   47 (271)
                      .+-.|+.-|=|+|--
T Consensus        24 ~~ViP~gaF~YIA~~   38 (368)
T TIGR02708        24 QQVIPKGAFGYIASG   38 (368)
T ss_pred             HHCCCCCCCCCCCCC
T ss_conf             312676434330136


No 159
>COG5212 PDE1 Low-affinity cAMP phosphodiesterase [Signal transduction mechanisms]
Probab=32.97  E-value=36  Score=14.81  Aligned_cols=25  Identities=16%  Similarity=0.280  Sum_probs=12.5

Q ss_pred             HHHHHHHHHHHHH-CCCCCEEEECCC
Q ss_conf             9999999846541-058878998056
Q gi|254780905|r  176 IKKEIEGCFIEKE-GKRTDVIVLACT  200 (271)
Q Consensus       176 ~~~~l~~~l~~~~-~~~~D~iILGCT  200 (271)
                      +...+.+++.+.. .+....++.-|.
T Consensus       242 ll~~~Wr~~ae~I~q~~LkgiliEcS  267 (356)
T COG5212         242 LLDTVWRKLAEKITQQQLKGILIECS  267 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHCCEEEEEC
T ss_conf             79999999987646876271699943


No 160
>KOG1579 consensus
Probab=32.62  E-value=37  Score=14.77  Aligned_cols=62  Identities=16%  Similarity=0.190  Sum_probs=35.9

Q ss_pred             CCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCC-CCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHH
Q ss_conf             887079877910589999999968999899994157898-989898999999999999986216984899717620263
Q gi|254780905|r   13 QNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFP-YGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTL   90 (271)
Q Consensus        13 ~~~IgifDSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~P-YG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~   90 (271)
                      ...|-|.|.|.|-     +|.++ +       .|..+.| ++.+.-....+.+.++-..+|+ .|+|.|  --||=++.
T Consensus        16 ~~~vlvlDGG~~t-----~Ler~-g-------~~~~~~PlWs~~~~~s~Pe~V~~~H~efL~-aGadIi--~T~Tyqas   78 (317)
T KOG1579          16 TGRVLVLDGGFGT-----QLERR-G-------YDKVDSPLWSAEALASNPEAVEQVHKEFLR-AGADII--STNTYQAS   78 (317)
T ss_pred             CCCEEEEECHHHH-----HHHHH-C-------CCCCCCCCCCCHHHCCCHHHHHHHHHHHHH-CCCCEE--EEEEEEEC
T ss_conf             6868998470778-----88761-4-------322379877853321186999999999997-068589--97655303


No 161
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=32.50  E-value=37  Score=14.76  Aligned_cols=68  Identities=16%  Similarity=0.138  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHH---HCCCCCCCCCC---H---HHHHHHHHCCCCCEEEEECHHHHC
Q ss_conf             9999999862169848997176202633899986---25777654454---7---999999840788329985067731
Q gi|254780905|r   64 LMFLFSDILDKYQPVLSVIACNTAFTLIKDELRS---TFPSMAFLGAV---P---AIKQAAAYTQSGLISILSTPATLR  133 (271)
Q Consensus        64 ~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~---~~~~ipiigii---~---~~~~a~~~~~~~~VgiLAT~~Ti~  133 (271)
                      +-+...++ .+.+-+..++||.|--+.|.+.|+.   +. ++|+++..   +   .++.++...+.-.+-++-|.|-..
T Consensus       114 ~aKLA~~~-kk~g~kv~lvaaDt~RpaA~eQL~~la~~~-~v~~~~~~~~~dp~~i~~~a~~~~k~~DvviiDTAGRl~  190 (433)
T PRK00771        114 AAKLARYF-QKKGLKVGVICADTWRPGAYEQLKQLCEKI-NVPFYGDPKEKDAVKIVKEGLEKLKKVDVIIVDTAGRHK  190 (433)
T ss_pred             HHHHHHHH-HHCCCCEEEEECCCCCHHHHHHHHHHHHHC-CCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf             99999999-977994678506788368999999999863-887317889999999999999984569889997765210


No 162
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=31.83  E-value=38  Score=14.68  Aligned_cols=52  Identities=13%  Similarity=0.106  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCHH
Q ss_conf             99999999999998621698489971762026338999862577765445479
Q gi|254780905|r   58 HALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGAVPA  110 (271)
Q Consensus        58 ~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~~~~~ipiigii~~  110 (271)
                      .+.......-++..+++..+|+|++-=-|.|+++.-.. +.+-++||++++-+
T Consensus        75 ~~~~~~~~~~~~~~l~~~kPD~VlV~GDt~stla~ala-A~~~~Ipv~HveaG  126 (365)
T TIGR03568        75 AKSMGLTIIGFSDAFERLKPDLVVVLGDRFEMLAAAIA-AALLNIPIAHIHGG  126 (365)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHH-HHHHCCEEEEEECC
T ss_conf             99999999999999854399899994898607799999-99819818999678


No 163
>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed
Probab=31.73  E-value=38  Score=14.67  Aligned_cols=14  Identities=21%  Similarity=0.261  Sum_probs=6.7

Q ss_pred             HHCCCCCEEEECCC
Q ss_conf             41058878998056
Q gi|254780905|r  187 KEGKRTDVIVLACT  200 (271)
Q Consensus       187 ~~~~~~D~iILGCT  200 (271)
                      +..++++..|+-++
T Consensus       185 L~~rg~~V~VvP~~  198 (356)
T PRK12838        185 LSKRGCNVTVLPYN  198 (356)
T ss_pred             HHHCCCEEEEECCC
T ss_conf             99789889998998


No 164
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=31.38  E-value=38  Score=14.64  Aligned_cols=193  Identities=8%  Similarity=0.027  Sum_probs=82.7

Q ss_pred             HHHHHHHHHCCC--CCE-EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHH--HHHHHHHHCCC
Q ss_conf             999999996899--989-9994157898989898999999999999986216984899717620263--38999862577
Q gi|254780905|r   27 IVLQKMRFLMPE--YHF-IYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTL--IKDELRSTFPS  101 (271)
Q Consensus        27 tv~~~l~~~lP~--~~~-iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~--~~~~l~~~~~~  101 (271)
                      .+.+.+.+..-.  ..+ ++++|+.+      +.+    .-.+.++.++.+ ++|.|++.....++.  .+..+++  .+
T Consensus        16 ~~~~gie~~a~~~g~~~~v~~~~~~~------d~~----~q~~~i~~li~~-~vDgIii~~~~~~~~~~~i~~a~~--~g   82 (271)
T cd06321          16 ALAKGAEAAAKKLNPGVKVTVVSADY------DLN----KQVSQIDNFIAA-KVDLILLNAVDSKGIAPAVKRAQA--AG   82 (271)
T ss_pred             HHHHHHHHHHHHCCCCEEEEEECCCC------CHH----HHHHHHHHHHHC-CCCEEEEECCCCCHHHHHHHHHHH--CC
T ss_conf             99999999999719976999807988------999----999999999974-998899934784035999999997--49


Q ss_pred             CCCCCC---C------------HHHHHHHH----H-CCCCCEEEEECHHH---H-CCHHHHHHHHHCCCCCEE--EECCC
Q ss_conf             765445---4------------79999998----4-07883299850677---3-170168998512788579--77056
Q gi|254780905|r  102 MAFLGA---V------------PAIKQAAA----Y-TQSGLISILSTPAT---L-RRTYTSNLIHSYVSQCHI--HLVSS  155 (271)
Q Consensus       102 ipiigi---i------------~~~~~a~~----~-~~~~~VgiLAT~~T---i-~s~~y~~~i~~~~~~~~v--~~~~~  155 (271)
                      +|++.+   .            .+.+.+..    . ...++|+++.-+..   . +-.-|.+.++++ ++..+  ....+
T Consensus        83 IpvV~~d~~~~~~~~~V~~dn~~~g~~a~~~L~~~~~~~~~i~~~~g~~~~~~~~R~~G~~~~l~~~-~~~~~~~~~~~~  161 (271)
T cd06321          83 IVVVAVDVAAEGADATVTTDNVQAGEISCQYLADRLGGKGNVAILNGPPVSAVLDRVAGCKAALAKY-PGIKLLSDDQNG  161 (271)
T ss_pred             CEEEEEEECCCCCCCEEEECHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHC-CCCEEEEEEECC
T ss_conf             9189986058998728997699999999987887528960799975998535999999999999877-997688767228


Q ss_pred             CCHH----HHHHHHHHCCC-------CCHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHCCCC-CEEEECH
Q ss_conf             4225----78776642677-------6979999999998465410588789980563588999999864899-7898285
Q gi|254780905|r  156 MILA----SRVEEYACGIK-------IKEDEIKKEIEGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSPWP-VDWLDNS  223 (271)
Q Consensus       156 ~~lv----~~iE~~~~~~~-------~~~~~~~~~l~~~l~~~~~~~~D~iILGCTHyPll~~~i~~~~~~~-v~iIDpa  223 (271)
                      ..-.    ...++.....+       ..+......++ .+.....  -|..+.|-.-+|-....++.--+.- .++.-|.
T Consensus       162 ~~~~~~~~~~~~~ll~~~p~~~aifa~nD~~A~Ga~~-a~~~~G~--~~i~ivg~dg~~~~~~~~~~~~~~~~~tv~Q~~  238 (271)
T cd06321         162 KGSRDGGLRVMQGLLTRFPKLDGVFAINDPTAIGADL-AAKQAGR--NDIKITSVDGAPDAEKAILSGNSLIIATAAQDP  238 (271)
T ss_pred             CCCHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHH-HHHHCCC--CCCEEEEEECCHHHHHHHHCCCCCCEEEEECCH
T ss_conf             8789999999999985088677899778689999999-9997597--999899996967999998669997279984899


Q ss_pred             HHHHHHHHHHHHH
Q ss_conf             8999999999864
Q gi|254780905|r  224 DSIARRARCLLPR  236 (271)
Q Consensus       224 ~~va~~~~~~L~~  236 (271)
                      ....+...++|-+
T Consensus       239 ~~mG~~av~~l~~  251 (271)
T cd06321         239 RAMARKAVEIGYD  251 (271)
T ss_pred             HHHHHHHHHHHHH
T ss_conf             9999999999999


No 165
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=30.87  E-value=39  Score=14.58  Aligned_cols=29  Identities=24%  Similarity=0.304  Sum_probs=21.0

Q ss_pred             CCEEEEECCCCHH-HHHHHHHHHCCCCCEE
Q ss_conf             8707987791058-9999999968999899
Q gi|254780905|r   14 NSILIFDSGIGGL-IVLQKMRFLMPEYHFI   42 (271)
Q Consensus        14 ~~IgifDSGiGGL-tv~~~l~~~lP~~~~i   42 (271)
                      ..|||.|-|+|=+ ||.+++.+..-..+++
T Consensus         2 ~kI~IiDyg~gNi~Sv~~al~~~~~~~~i~   31 (208)
T PRK13146          2 MSVAIIDYGSGNLRSAARALERAAPGADVT   31 (208)
T ss_pred             CEEEEEECCCCHHHHHHHHHHHHCCCCEEE
T ss_conf             889999379558999999999857997399


No 166
>PRK13147 consensus
Probab=30.72  E-value=39  Score=14.56  Aligned_cols=21  Identities=14%  Similarity=0.246  Sum_probs=17.4

Q ss_pred             CEEEEECCCCHH-HHHHHHHHH
Q ss_conf             707987791058-999999996
Q gi|254780905|r   15 SILIFDSGIGGL-IVLQKMRFL   35 (271)
Q Consensus        15 ~IgifDSGiGGL-tv~~~l~~~   35 (271)
                      .|||.|-|+|-| ||.+++.+.
T Consensus         2 kI~IIDyg~GNi~Sv~~al~~~   23 (211)
T PRK13147          2 RVVVIDYNGGNLASAARALEKA   23 (211)
T ss_pred             EEEEECCCCHHHHHHHHHHHHH
T ss_conf             8999937943699999999988


No 167
>KOG3120 consensus
Probab=30.72  E-value=39  Score=14.56  Aligned_cols=26  Identities=31%  Similarity=0.460  Sum_probs=14.4

Q ss_pred             HHHHHHCCCCCCC-CCCHHHHHHHHHC
Q ss_conf             9998625777654-4547999999840
Q gi|254780905|r   93 DELRSTFPSMAFL-GAVPAIKQAAAYT  118 (271)
Q Consensus        93 ~~l~~~~~~ipii-gii~~~~~a~~~~  118 (271)
                      +++++.+..+|+. ||+++++.+.+..
T Consensus        74 ~~ik~~~r~iP~~Pgmv~lik~~ak~g  100 (256)
T KOG3120          74 AEIKQVLRSIPIVPGMVRLIKSAAKLG  100 (256)
T ss_pred             HHHHHHHHCCCCCCCHHHHHHHHHHCC
T ss_conf             999999851889834899999998678


No 168
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=30.68  E-value=39  Score=14.56  Aligned_cols=57  Identities=9%  Similarity=0.036  Sum_probs=33.2

Q ss_pred             CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHH--HHHHHHHCCCCCCCCC
Q ss_conf             998999941578989898989999999999999862169848997176202633--8999862577765445
Q gi|254780905|r   38 EYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLI--KDELRSTFPSMAFLGA  107 (271)
Q Consensus        38 ~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~--~~~l~~~~~~ipiigi  107 (271)
                      +.++.|.++..    +  +.+    .-.+.++.++.+ ++|.|+++++..++..  ++..++  .+||++.+
T Consensus        30 Gv~v~~~~~~~----~--d~~----~Q~~~i~~~i~~-~vDaIii~p~~~~~~~~~i~~a~~--agIpVv~~   88 (271)
T cd06312          30 GVDVEYRGPET----F--DVA----DMARLIEAAIAA-KPDGIVVTIPDPDALDPAIKRAVA--AGIPVISF   88 (271)
T ss_pred             CCEEEEEECCC----C--CHH----HHHHHHHHHHHC-CCCEEEEECCCCCHHHHHHHHHHH--CCCEEEEE
T ss_conf             99899996898----9--999----999999999975-999899937883002699999996--59869999


No 169
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=30.55  E-value=39  Score=14.54  Aligned_cols=196  Identities=11%  Similarity=0.034  Sum_probs=92.1

Q ss_pred             HHHHHHHHHCCCCCEEEEECCCCCCCCCC-----CHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCC
Q ss_conf             99999999689998999941578989898-----9899999999999998621698489971762026338999862577
Q gi|254780905|r   27 IVLQKMRFLMPEYHFIYVADDVGFPYGNW-----EDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPS  101 (271)
Q Consensus        27 tv~~~l~~~lP~~~~iY~~D~~~~PYG~k-----s~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~~~~~  101 (271)
                      -...++++ .-..++.-+  -=++||.-.     +.+-|   +.+.+..++.. +++-| +..+ .|.+....++.-| +
T Consensus        70 l~idA~r~-a~A~~It~V--iPY~~YaRQDr~~~~ge~i---sak~vA~ll~~-~~d~v-itvD-lH~h~~~~i~~ff-~  139 (301)
T PRK07199         70 FAAEAARE-LGARRVVLV--APYLAYMRQDIRFHPGEAI---SSRHFARLLSG-SFDRL-ITVD-PHLHRYHSLSEVY-P  139 (301)
T ss_pred             HHHHHHHH-CCCCEEEEE--ECCCCHHCCCCCCCCCCCC---CHHHHHHHHHH-HCCEE-EEEC-CCCCCHHHHCCCC-C
T ss_conf             99999987-488748998--1566210132234799851---08999999985-27768-9970-4532267752677-8


Q ss_pred             CCCCCC--CHHHHHHHHHCCCCCEEEEECHHHHCCHHHHHHHHHCCCCCEEE--ECCCCCHH----HHHHHHHHCCC--C
Q ss_conf             765445--47999999840788329985067731701689985127885797--70564225----78776642677--6
Q gi|254780905|r  102 MAFLGA--VPAIKQAAAYTQSGLISILSTPATLRRTYTSNLIHSYVSQCHIH--LVSSMILA----SRVEEYACGIK--I  171 (271)
Q Consensus       102 ipiigi--i~~~~~a~~~~~~~~VgiLAT~~Ti~s~~y~~~i~~~~~~~~v~--~~~~~~lv----~~iE~~~~~~~--~  171 (271)
                      +|+.++  .+.+....... ..+.-|.+....-. ...+..-+.++.+..+.  ......-+    +.+.. ..+..  +
T Consensus       140 ip~~nl~~~~~l~~~i~~~-~~~~vvVsPD~G~~-~ra~~~a~~lg~~~~~~~K~R~~~~~v~i~~~~~~~-v~gk~~II  216 (301)
T PRK07199        140 IPARVLHAAPAIAAWIRAH-VPKPLLIGPDSESE-QWVSAVAGRAGAPHAVLRKTRHGDRDVEISLPDLSA-WAGRTPVL  216 (301)
T ss_pred             CCCEEEEECHHHHHHHHHH-CCCCEEECCCCCHH-HHHHHHHHHCCCCEEEEEEEECCCCCCEEECCCCCC-CCCCCEEE
T ss_conf             9817767058789999851-87753678887779-999999986599879999886589863374465545-58995478


Q ss_pred             CHHHH--HHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHCCC-------------CCEEEECHHHHHHHHHHHHH
Q ss_conf             97999--999999846541058878998056358899999986489-------------97898285899999999986
Q gi|254780905|r  172 KEDEI--KKEIEGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSPW-------------PVDWLDNSDSIARRARCLLP  235 (271)
Q Consensus       172 ~~~~~--~~~l~~~l~~~~~~~~D~iILGCTHyPll~~~i~~~~~~-------------~v~iIDpa~~va~~~~~~L~  235 (271)
                      -++.+  -..+.+....++..|+..+...|||=-|-.+.++++...             +...||-+..+|+.++++..
T Consensus       217 VDDiIdTGgTl~~aa~~Lk~~GA~~V~~~aTHgvfs~~A~~~i~~s~i~~ivvTnTip~~~~~isva~llAeaI~ri~~  295 (301)
T PRK07199        217 VDDIVSTGRTLIEAARQLLAAGAASPVCVGVHALFAPDAYSALLAAGAARVVSTDTVPHPTNAISLAPLLAEALRDLFG  295 (301)
T ss_pred             ECCHHHCHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHCCCCEEEECCCCCCCCCEEEHHHHHHHHHHHHHC
T ss_conf             6642214377999999999869985899997864785699999848998899828846898745589999999999867


No 170
>pfam08821 CGGC CGGC domain. This putative domain contains a quite highly conserved sequence of CGGC in its central region. The domain has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=30.24  E-value=40  Score=14.51  Aligned_cols=37  Identities=14%  Similarity=0.268  Sum_probs=26.0

Q ss_pred             HHHHCCCCCEEEEC-----------CCCHHHHHHHHHHHCCCCCEEEECH
Q ss_conf             65410588789980-----------5635889999998648997898285
Q gi|254780905|r  185 IEKEGKRTDVIVLA-----------CTHYPLIVHVFRQLSPWPVDWLDNS  223 (271)
Q Consensus       185 ~~~~~~~~D~iILG-----------CTHyPll~~~i~~~~~~~v~iIDpa  223 (271)
                      ..++.+++|+|-|+           |-|+.-+++.+++.++  +++|+..
T Consensus        59 ~~lk~~~~d~IHlasC~~~~~~~~~CP~~~~~~~~i~~~~g--i~VV~GT  106 (107)
T pfam08821        59 KKLKKNGADTIHLSSCIRKGNPIGPCPHIDELKKIIEKKYG--IKVVGGT  106 (107)
T ss_pred             HHHHHCCCCEEEECCCEECCCCCCCCCCHHHHHHHHHHHHC--CCEEECC
T ss_conf             99987799999975656148989999889999999999759--9664115


No 171
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=30.13  E-value=40  Score=14.50  Aligned_cols=53  Identities=11%  Similarity=0.113  Sum_probs=32.2

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHH-----HHHHHHHHCCCCCCC
Q ss_conf             898989898999999999999986216984899717620263-----389998625777654
Q gi|254780905|r   49 GFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTL-----IKDELRSTFPSMAFL  105 (271)
Q Consensus        49 ~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~-----~~~~l~~~~~~ipii  105 (271)
                      ..|+|.-+.+++.+...+.+..|++ .|+|+++  |-|.+..     ++...|+. .++|++
T Consensus       113 ~~~~~~~~~~e~~~~f~eQ~~~L~e-~GvD~il--lET~~dl~E~~~Al~aar~~-~~lPvi  170 (608)
T PRK08645        113 DGPQGDLSLEEILEEFREQIDALLE-EGVDGLL--LETFYDLEELLEALKAARKK-TDLPII  170 (608)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHH-CCCCEEE--EEHHCCHHHHHHHHHHHHHH-CCCCEE
T ss_conf             9999999999999999999999975-7998999--86305999999999999975-699799


No 172
>KOG1576 consensus
Probab=30.11  E-value=40  Score=14.50  Aligned_cols=57  Identities=5%  Similarity=-0.033  Sum_probs=32.7

Q ss_pred             HHHHHHHHHHCCCCCEEEEECCCCCCCC-------CCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf             8999999996899989999415789898-------9898999999999999986216984899717620
Q gi|254780905|r   26 LIVLQKMRFLMPEYHFIYVADDVGFPYG-------NWEDHALKKRLMFLFSDILDKYQPVLSVIACNTA   87 (271)
Q Consensus        26 Ltv~~~l~~~lP~~~~iY~~D~~~~PYG-------~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTa   87 (271)
                      ..++-..++..|.+.|+--  |+-.-||       +-|.+.+++-+.+-++.| +---+|+  +-|.-+
T Consensus        83 e~~lg~al~~vPR~aYyIa--TKvgRy~ld~~~~FdfsadkvreSv~rSlerL-qldyvDi--lqiHDv  146 (342)
T KOG1576          83 EEGLGLALKDVPREAYYIA--TKVGRYELDYANMFDFSADKVRESVKRSLERL-QLDYVDI--LQIHDV  146 (342)
T ss_pred             HHHHHHHHHHCCHHHEEEE--EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEE--EEEECC
T ss_conf             8888788763882343654--43321245731014511899999999999985-7762678--886220


No 173
>PRK05259 consensus
Probab=29.82  E-value=41  Score=14.46  Aligned_cols=189  Identities=10%  Similarity=0.016  Sum_probs=93.8

Q ss_pred             HHHHHCCCCCEEEEECCCCCCCC-----CCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCC
Q ss_conf             99996899989999415789898-----9898999999999999986216984899717620263389998625777654
Q gi|254780905|r   31 KMRFLMPEYHFIYVADDVGFPYG-----NWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFL  105 (271)
Q Consensus        31 ~l~~~lP~~~~iY~~D~~~~PYG-----~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~~~~~ipii  105 (271)
                      ...++.-..++.-+  --++||.     .++.+-|   +.+.+..+++..|++-| +.++= |+   +.++.-| ++|+-
T Consensus        72 ~A~r~~~A~~It~V--iPY~~YsRQDr~~~~~e~i---sak~vA~lL~~~G~d~v-itvDl-H~---~~i~gfF-~ip~d  140 (310)
T PRK05259         72 DALRRSSARRITAV--IPYFGYARQDRKPGPRTPI---SAKLVANLITEAGADRV-LTLDL-HA---GQIQGFF-DIPTD  140 (310)
T ss_pred             HHHHHCCCCCEEEE--ECCCCCCCCCCCCCCCCCE---EHHHHHHHHHCCCCCEE-EEECC-CC---HHHHHHC-CCCCC
T ss_conf             99987388717999--4145511155778999866---58887511210477668-99627-85---7778515-99766


Q ss_pred             CCC--HHHHHHHH-HCCCCCEEEEECHH--HHCCHHHHHHHHHCCCCCEEEE--CCCCCHHH---HHHHHHHCC--CCCH
Q ss_conf             454--79999998-40788329985067--7317016899851278857977--05642257---877664267--7697
Q gi|254780905|r  106 GAV--PAIKQAAA-YTQSGLISILSTPA--TLRRTYTSNLIHSYVSQCHIHL--VSSMILAS---RVEEYACGI--KIKE  173 (271)
Q Consensus       106 gii--~~~~~a~~-~~~~~~VgiLAT~~--Ti~s~~y~~~i~~~~~~~~v~~--~~~~~lv~---~iE~~~~~~--~~~~  173 (271)
                      ++-  |....... .....++-|++-..  .-+...+.+.+   +.+..+..  ...+.-+.   .+. ...+.  .+-+
T Consensus       141 nl~a~~~l~~~i~~~~~~~~~vvVsPD~G~~~ra~~~a~~l---~~~~~~~~K~R~~~~~~~~~~~~g-dV~Gk~~IIvD  216 (310)
T PRK05259        141 NLYAAPVMARDIKARYDLGNVMVVSPDVGGVVRARALAKRL---DAPLAIVDKRRERPGESEVMNVIG-DVSGRDCILID  216 (310)
T ss_pred             EEEEEEEHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHC---CCCEEEEEEEECCCCCCCCCCCCC-CCCCCEEEEEC
T ss_conf             49826711678986389766399914926999999999981---996789998606899543345456-62312489517


Q ss_pred             HHH--HHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHCC---------------------CCCEEEECHHHHHHHH
Q ss_conf             999--99999984654105887899805635889999998648---------------------9978982858999999
Q gi|254780905|r  174 DEI--KKEIEGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSP---------------------WPVDWLDNSDSIARRA  230 (271)
Q Consensus       174 ~~~--~~~l~~~l~~~~~~~~D~iILGCTHyPll~~~i~~~~~---------------------~~v~iIDpa~~va~~~  230 (271)
                      +.+  -..+.+....++.+|+..+...|||--|-.+..+++..                     ++++++|=+..+|+.+
T Consensus       217 DiIdTGgTl~~aa~~Lk~~GA~~V~~~~THgvfs~~A~~ri~~s~i~~vvvTdTi~~~~~~~~~~kl~vlsva~llAeaI  296 (310)
T PRK05259        217 DIVDSGGTLCNAAEALLANGANSVTAYITHGVLSGGAVARIASSKLKELVITDSIQPTEAVNDAPNIRVLSIAPLIGEAI  296 (310)
T ss_pred             CHHHCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHCCCCCEEEEECCCCCCHHHHCCCCCEEEEHHHHHHHHH
T ss_conf             34416889999999998779986999997853685699998628997899938978884570589939998299999999


Q ss_pred             HHHH
Q ss_conf             9998
Q gi|254780905|r  231 RCLL  234 (271)
Q Consensus       231 ~~~L  234 (271)
                      .+.-
T Consensus       297 ~r~~  300 (310)
T PRK05259        297 RRTA  300 (310)
T ss_pred             HHHH
T ss_conf             9986


No 174
>PRK09453 phosphodiesterase; Provisional
Probab=29.23  E-value=13  Score=17.71  Aligned_cols=30  Identities=20%  Similarity=0.267  Sum_probs=23.8

Q ss_pred             CCCCEEEECCCCHHHHHHHHHHHCCCCCEEEECHHH
Q ss_conf             588789980563588999999864899789828589
Q gi|254780905|r  190 KRTDVIVLACTHYPLIVHVFRQLSPWPVDWLDNSDS  225 (271)
Q Consensus       190 ~~~D~iILGCTHyPll~~~i~~~~~~~v~iIDpa~~  225 (271)
                      .++|.++.|=||.|++..     . .++.+|+|+..
T Consensus       117 ~~~Dvvi~GHTH~p~~~~-----~-~g~l~iNPGSv  146 (183)
T PRK09453        117 HAGDVLVYGHTHIPVAEK-----Q-GGIILFNPGSV  146 (183)
T ss_pred             CCCCEEEECCCCCCEEEE-----E-CCEEEEECCCC
T ss_conf             289999989756414799-----7-99999969998


No 175
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family; InterPro: IPR005966    Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). PLP is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination , , . PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors . Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy .   PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalyzed reactions, enzymatic and non-enzymatic .   This entry represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as) 1-aminocyclopropane-1-carboxylate deaminase. However, the members of this family are less well conserved.; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding.
Probab=28.98  E-value=42  Score=14.37  Aligned_cols=36  Identities=14%  Similarity=0.057  Sum_probs=15.4

Q ss_pred             EEECHHHHHHHHHHHHHHCCCCC--CCCCCCEEEEECCC
Q ss_conf             98285899999999986427334--57788779996699
Q gi|254780905|r  219 WLDNSDSIARRARCLLPRINTHQ--TRVFDDHALFLSGK  255 (271)
Q Consensus       219 iIDpa~~va~~~~~~L~~~~~~~--~~~~~~~~f~~T~~  255 (271)
                      |.|| ..++|...=+++......  =...++.=|.=||-
T Consensus       291 iLDP-VYtGKA~~GLid~~~~~~kC~~~~G~iLFIHTGG  328 (339)
T TIGR01275       291 ILDP-VYTGKAFYGLIDLIRKKEKCLEDKGKILFIHTGG  328 (339)
T ss_pred             EECC-CHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCC
T ss_conf             5575-2158999988886516850002688786786275


No 176
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=28.97  E-value=42  Score=14.37  Aligned_cols=121  Identities=15%  Similarity=0.129  Sum_probs=59.9

Q ss_pred             CCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHH----HHHHHHHHCCCCCEEEEECCCC-
Q ss_conf             88707987791058999999996899989999415789898989899999999----9999986216984899717620-
Q gi|254780905|r   13 QNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLM----FLFSDILDKYQPVLSVIACNTA-   87 (271)
Q Consensus        13 ~~~IgifDSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~----~~~~~ll~k~~~~~IVIACNTa-   87 (271)
                      .+.|.|+=-|.-|+++++.|.++  ..+ ++..|..-.|-.   .+.+.+-+.    ..-..++  ..+++||+- --. 
T Consensus         6 ~k~v~V~GlG~sG~s~~~~L~~~--G~~-v~~~D~~~~~~~---~~~l~~~~~~~~g~~~~~~~--~~~d~vV~S-PGI~   76 (438)
T PRK03806          6 GKNVVIIGLGLTGLSCVDFFLAR--GVT-PRVMDTRMTPPG---LDKLPENVERHTGSLNDEWL--LAADLIVAS-PGIA   76 (438)
T ss_pred             CCEEEEEEECHHHHHHHHHHHHC--CCE-EEEEECCCCCHH---HHHHHCCCCEEECCCCHHHH--CCCCEEEEC-CCCC
T ss_conf             99899994578889999999978--996-999989999005---78864588466577796680--679999989-9789


Q ss_pred             -CHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEECHH--HHCCHHHHHHHHHCCCCC
Q ss_conf             -2633899986257776544547999999840788329985067--731701689985127885
Q gi|254780905|r   88 -FTLIKDELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPA--TLRRTYTSNLIHSYVSQC  148 (271)
Q Consensus        88 -sa~~~~~l~~~~~~ipiigii~~~~~a~~~~~~~~VgiLAT~~--Ti~s~~y~~~i~~~~~~~  148 (271)
                       +.-.+...++  .++||++=++   .+....+.+-|||=||.|  |.. ......+++.+.+.
T Consensus        77 ~~~p~~~~a~~--~~i~i~seie---l~~~~~~~~iIaVTGTnGKTTTt-~li~~iL~~~g~~~  134 (438)
T PRK03806         77 LAHPSLSAAAD--AGVEIVGDIE---LFCREAQAPIVAITGSNGKSTVT-TLVGEMAKAAGVNV  134 (438)
T ss_pred             CCCHHHHHHHH--CCCCEEEHHH---HHHCCCCCCEEEEECCCCCHHHH-HHHHHHHHHCCCCE
T ss_conf             98989999998--7994776999---97222799889994899848999-99999998659975


No 177
>pfam10442 FIST_C FIST C domain. The FIST C domain is a novel sensory domain, which is present in signal transduction proteins from Bacteria, Archaea and Eukarya. Chromosomal proximity of FIST-encoding genes to those coding for proteins involved in amino acid metabolism and transport suggest that FIST domains bind small ligands, such as amino acids.
Probab=28.82  E-value=42  Score=14.35  Aligned_cols=89  Identities=12%  Similarity=0.143  Sum_probs=54.4

Q ss_pred             CCCEEEEECCCCHHHHHHHHHHHCC-CCCEEEEECCCCCCCCC------CCHHHHHHHHHHHHHHHHHCC-CCC-EEEEE
Q ss_conf             8870798779105899999999689-99899994157898989------898999999999999986216-984-89971
Q gi|254780905|r   13 QNSILIFDSGIGGLIVLQKMRFLMP-EYHFIYVADDVGFPYGN------WEDHALKKRLMFLFSDILDKY-QPV-LSVIA   83 (271)
Q Consensus        13 ~~~IgifDSGiGGLtv~~~l~~~lP-~~~~iY~~D~~~~PYG~------ks~~~I~~~~~~~~~~ll~k~-~~~-~IVIA   83 (271)
                      ..|.|+-|   ||-.+++.+....+ +-.+.+++   .+|=|+      .+.+.+.+.+.+.++.+.++. .+. .+++-
T Consensus        24 ~~PLg~~~---~~~~~vr~~~~v~~~~gsl~~~~---~i~eG~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~   97 (137)
T pfam10442        24 LFPLGVER---GGEYFVRHPLGVDPEDGSLTFAG---DVPEGEELQLMLRDAEDLIEDLRRALEAAREGGRPPAGALLFS   97 (137)
T ss_pred             HCCEEEEE---CCEEEEECHHHCCCCCCCEEEEC---CCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEEEE
T ss_conf             09888998---99589976101556799589823---5899989999948999999999999999985389965999998


Q ss_pred             CCCCCH-------HHHHHHHHHCCCCCCCCC
Q ss_conf             762026-------338999862577765445
Q gi|254780905|r   84 CNTAFT-------LIKDELRSTFPSMAFLGA  107 (271)
Q Consensus        84 CNTasa-------~~~~~l~~~~~~ipiigi  107 (271)
                      |..-..       .-++.+++.+.+.|++|.
T Consensus        98 C~~R~~~l~~~~~~e~~~~~~~~~~~P~~Gf  128 (137)
T pfam10442        98 CIGRGLLLFGEPDEELEAVREVLGDAPVIGF  128 (137)
T ss_pred             CHHHHHHHCCCHHHHHHHHHHHHCCCCEEEE
T ss_conf             6313766614658999999998189988831


No 178
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=28.71  E-value=20  Score=16.47  Aligned_cols=32  Identities=19%  Similarity=0.241  Sum_probs=25.1

Q ss_pred             CCCCCEEEECCCCHHHHHHHHHHHCCCCCEEEECHHHH
Q ss_conf             05887899805635889999998648997898285899
Q gi|254780905|r  189 GKRTDVIVLACTHYPLIVHVFRQLSPWPVDWLDNSDSI  226 (271)
Q Consensus       189 ~~~~D~iILGCTHyPll~~~i~~~~~~~v~iIDpa~~v  226 (271)
                      ..++|.+|.|=||-|.....      ..+.+++|++..
T Consensus       107 ~~~~Dvli~GHTH~p~~~~~------~~i~~vNPGS~s  138 (172)
T COG0622         107 ELGADVLIFGHTHKPVAEKV------GGILLVNPGSVS  138 (172)
T ss_pred             HCCCCEEEECCCCCCEEEEE------CCEEEECCCCCC
T ss_conf             46998999798675408998------999998499867


No 179
>COG3560 FMR2 Predicted oxidoreductase related to nitroreductase [General function prediction only]
Probab=28.71  E-value=26  Score=15.80  Aligned_cols=62  Identities=16%  Similarity=0.174  Sum_probs=32.3

Q ss_pred             HHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHH---HHCCCCCEEEEECCCCCHHHHHHHHH
Q ss_conf             999999996899989999415789898989899999999999998---62169848997176202633899986
Q gi|254780905|r   27 IVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDI---LDKYQPVLSVIACNTAFTLIKDELRS   97 (271)
Q Consensus        27 tv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~l---l~k~~~~~IVIACNTasa~~~~~l~~   97 (271)
                      +.++.+.++..    || +=.++.|-+   .++|.+.+..++..-   ...+ ..-+||=-+-.|--.++..+.
T Consensus         5 ~~~~ai~~RRT----iY-aL~k~lp~~---~e~i~~~v~~avk~tPsaFNSQ-ssR~ViL~gd~h~KlWdivk~   69 (200)
T COG3560           5 TFLNAIENRRT----IY-ALKKNLPVS---DEEIKEIVKEAVKHTPSAFNSQ-SSRVVILFGDEHDKLWDIVKD   69 (200)
T ss_pred             HHHHHHHHHHH----HH-HCCCCCCCC---HHHHHHHHHHHHHCCCCCCCCC-CCEEEEEECCCHHHHHHHHHH
T ss_conf             79999986566----76-148888874---8999999999996198420267-740899956624788987899


No 180
>PRK04040 adenylate kinase; Provisional
Probab=28.69  E-value=42  Score=14.34  Aligned_cols=27  Identities=26%  Similarity=0.427  Sum_probs=21.6

Q ss_pred             CCCCHHHHHHHHHHHCC-CCCEEEEECC
Q ss_conf             79105899999999689-9989999415
Q gi|254780905|r   21 SGIGGLIVLQKMRFLMP-EYHFIYVADD   47 (271)
Q Consensus        21 SGiGGLtv~~~l~~~lP-~~~~iY~~D~   47 (271)
                      .|+|-=||++.+.+.++ +..++=|||-
T Consensus        11 PGvGKTTv~~~~~~~l~~~~~~vn~G~~   38 (189)
T PRK04040         11 PGVGKTTVLNKALEKLKEDYKIVNFGDV   38 (189)
T ss_pred             CCCCHHHHHHHHHHHHCCCCEEEEHHHH
T ss_conf             9887899999999972358759867799


No 181
>KOG1529 consensus
Probab=28.66  E-value=28  Score=15.55  Aligned_cols=62  Identities=6%  Similarity=0.053  Sum_probs=30.5

Q ss_pred             EEECCCCHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCHHHHHHHHHHHCC
Q ss_conf             99805635889999998648997898285899999999986427334577887799966997999999998568
Q gi|254780905|r  195 IVLACTHYPLIVHVFRQLSPWPVDWLDNSDSIARRARCLLPRINTHQTRVFDDHALFLSGKPDIAMRRLMQGFG  268 (271)
Q Consensus       195 iILGCTHyPll~~~i~~~~~~~v~iIDpa~~va~~~~~~L~~~~~~~~~~~~~~~f~~T~~~~~~~~~~~~~~G  268 (271)
                      =|-|--|+|+-     +.+.+. ..+-|+    .++...+....+..  ......-|-||-.......+..+.|
T Consensus       199 HIpGa~n~P~~-----~~~~~~-g~~k~~----edl~~~f~~~~l~~--~~p~~~sC~~Gisa~~i~~al~r~g  260 (286)
T KOG1529         199 HIPGAINFPFD-----EVLDPD-GFIKPA----EDLKHLFAQKGLKL--SKPVIVSCGTGISASIIALALERSG  260 (286)
T ss_pred             CCCCCCCCCHH-----HHCCCC-CCCCCH----HHHHHHHHHCCCCC--CCCEEEEECCCHHHHHHHHHHHHCC
T ss_conf             67886357838-----750765-660787----88888886506344--7977876055403889999998628


No 182
>TIGR02456 treS_nterm trehalose synthase; InterPro: IPR012810    Trehalose synthase interconverts maltose and alpha,alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor .   More information about this protein can be found at Protein of the Month: alpha-Amylase .; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process.
Probab=28.62  E-value=43  Score=14.33  Aligned_cols=29  Identities=17%  Similarity=0.395  Sum_probs=15.6

Q ss_pred             EECCCCHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf             87791058999999996899989999415
Q gi|254780905|r   19 FDSGIGGLIVLQKMRFLMPEYHFIYVADD   47 (271)
Q Consensus        19 fDSGiGGLtv~~~l~~~lP~~~~iY~~D~   47 (271)
                      .|--.=-+=.+.+|+-.||.-.++||||-
T Consensus       356 LdnDR~~iELl~aLLLsLpGsPilYYGDE  384 (560)
T TIGR02456       356 LDNDRRRIELLTALLLSLPGSPILYYGDE  384 (560)
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCEEECCCC
T ss_conf             23308899999999996389978876752


No 183
>pfam00481 PP2C Protein phosphatase 2C. Protein phosphatase 2C is a Mn++ or Mg++ dependent protein serine/threonine phosphatase.
Probab=28.62  E-value=43  Score=14.33  Aligned_cols=52  Identities=23%  Similarity=0.280  Sum_probs=27.7

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             707987791058999999996899989999415789898989899999999999998
Q gi|254780905|r   15 SILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDI   71 (271)
Q Consensus        15 ~IgifDSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~l   71 (271)
                      -.|||| |.||-.+-....+.+|.    ++.....+|-++.-.+.+.+-..++-..+
T Consensus        36 ~~~V~D-GhGG~~~~~~~~~~l~~----~l~~~~~~~~~~~~~~~l~~af~~~~~~~   87 (253)
T pfam00481        36 FFAVFD-GHGGSQAAKYAGKHLET----ILALRRSFPEGRDLEDALRKSFLETDEEL   87 (253)
T ss_pred             EEEEEE-CCCCHHHHHHHHHHHHH----HHHHCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             999997-99986999999999999----99945224772379999999999999999


No 184
>TIGR01331 bisphos_cysQ 3'(2'),5'-bisphosphate nucleotidase; InterPro: IPR006240    Sulphate is incorporated into 3-phosphoadenylylsulphate, PAPS, for utilization in pathways such as methionine biosynthesis. Transfer of sulphate from PAPS to an acceptor leaves adenosine 3'-5'-bisphosphate, APS. These sequences describe a form found in bacteria of the enzyme 3'(2'),5'-bisphosphate nucleotidase, which removes the 3'-phosphate from APS to regenerate AMP and help drive the cycle..
Probab=28.51  E-value=28  Score=15.56  Aligned_cols=21  Identities=24%  Similarity=0.420  Sum_probs=15.5

Q ss_pred             CHHHHHHHHHHCCCCCCCCCC
Q ss_conf             263389998625777654454
Q gi|254780905|r   88 FTLIKDELRSTFPSMAFLGAV  108 (271)
Q Consensus        88 sa~~~~~l~~~~~~ipiigii  108 (271)
                      |-+.++.||+.+|+|||++=+
T Consensus        45 ~~~i~e~L~~l~P~IPvlSEE   65 (263)
T TIGR01331        45 HKIILEGLRALTPDIPVLSEE   65 (263)
T ss_pred             HHHHHHHHHHHCCCCCEECCC
T ss_conf             688754566417888676136


No 185
>COG0787 Alr Alanine racemase [Cell envelope biogenesis, outer membrane]
Probab=28.14  E-value=43  Score=14.28  Aligned_cols=62  Identities=19%  Similarity=0.093  Sum_probs=25.8

Q ss_pred             HHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCC-CCCC
Q ss_conf             9999996899989999415789898989899999999999998621698489971762026338999862577-7654
Q gi|254780905|r   29 LQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPS-MAFL  105 (271)
Q Consensus        29 ~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~~~~~-ipii  105 (271)
                      ++.++++.|+..+.-+  -|.--||-=        ..++...++ ..|++..-+||.-= +   -.||+...+ .||+
T Consensus        18 ~~~i~~~~~~~~~~AV--VKAnAYGhG--------~~~va~~l~-~~g~~~f~VA~l~E-A---i~LR~~gi~~~~Il   80 (360)
T COG0787          18 LRALRELAGPAKLMAV--VKANAYGHG--------AVRVAKALL-DAGADGFGVASLEE-A---IELREAGITGAPIL   80 (360)
T ss_pred             HHHHHHHCCCCEEEEE--EECCCCCCC--------HHHHHHHHH-HCCCCEEEECCHHH-H---HHHHHCCCCCCCEE
T ss_conf             9999974788579999--965436778--------999999999-85999899862999-9---99997188899789


No 186
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=27.99  E-value=44  Score=14.26  Aligned_cols=79  Identities=9%  Similarity=0.058  Sum_probs=35.7

Q ss_pred             CEEEEECCCCH---HHHHHHHHHHCC--CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECC--CC
Q ss_conf             70798779105---899999999689--998999941578989898989999999999999862169848997176--20
Q gi|254780905|r   15 SILIFDSGIGG---LIVLQKMRFLMP--EYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACN--TA   87 (271)
Q Consensus        15 ~IgifDSGiGG---Ltv~~~l~~~lP--~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACN--Ta   87 (271)
                      +|||.=+.+.-   -.+++.+.+..-  +.++++ .++.+      +.+.    -.+.++.++.+ +++.|++...  ++
T Consensus         1 TIGvivp~l~npff~~~~~gi~~~a~~~Gy~~~i-~~s~~------~~~~----e~~~i~~l~~~-~vdgiI~~p~~~~~   68 (268)
T cd06323           1 TIGLSVSTLNNPFFVTLKDGAQKEAKELGYELTV-LDAQN------DAAK----QLNDIEDLITR-GVDAIIINPTDSDA   68 (268)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEE-EECCC------CHHH----HHHHHHHHHHC-CCCEEEECCCCCCC
T ss_conf             9899988897999999999999999975998999-81999------9999----99999999964-99989975654212


Q ss_pred             CHHHHHHHHHHCCCCCCCCC
Q ss_conf             26338999862577765445
Q gi|254780905|r   88 FTLIKDELRSTFPSMAFLGA  107 (271)
Q Consensus        88 sa~~~~~l~~~~~~ipiigi  107 (271)
                      +...++.+++.  ++|++.+
T Consensus        69 ~~~~i~~~~~~--~iPvV~i   86 (268)
T cd06323          69 VVPAVKAANEA--GIPVFTI   86 (268)
T ss_pred             CHHHHHHHHHC--CCCEEEE
T ss_conf             46999999976--9968996


No 187
>PRK13462 acid phosphatase; Provisional
Probab=27.77  E-value=44  Score=14.23  Aligned_cols=41  Identities=7%  Similarity=0.003  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHCCC
Q ss_conf             99999999846541058878998056358899999986489
Q gi|254780905|r  175 EIKKEIEGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSPW  215 (271)
Q Consensus       175 ~~~~~l~~~l~~~~~~~~D~iILGCTHyPll~~~i~~~~~~  215 (271)
                      .+...+...+........+.=||=+||=-.++-.+...++-
T Consensus       121 ~~~~Rv~~~l~~i~~~~~~~~vlvVsHg~~iR~ll~~~lg~  161 (203)
T PRK13462        121 QVNERADRAVALALEHMESRDVVFVSHGHFSRAVITRWVEL  161 (203)
T ss_pred             HHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCC
T ss_conf             99999999999999877998189994848999999999597


No 188
>PRK06936 type III secretion system ATPase; Provisional
Probab=27.39  E-value=45  Score=14.19  Aligned_cols=107  Identities=14%  Similarity=0.103  Sum_probs=54.2

Q ss_pred             CCEEEE-ECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHH
Q ss_conf             870798-7791058999999996899989999415789898989899999999999998621698489971762026338
Q gi|254780905|r   14 NSILIF-DSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIK   92 (271)
Q Consensus        14 ~~Igif-DSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~   92 (271)
                      ..|||| +||+|==+.+..+.+.. +.+++-+     +--|+|..| +.++.    +..+...+-+--|+-+||+..-..
T Consensus       163 QR~gIfagsGvGKs~Ll~~i~r~~-~adv~V~-----alIGERgrE-v~efi----e~~l~~~gl~rsvvV~atsd~p~~  231 (439)
T PRK06936        163 QRMGIFAAAGGGKSTLLASLIRSA-EVDVTVL-----ALIGERGRE-VREFI----ESDLGEEGLRKAVLVVATSDRPSM  231 (439)
T ss_pred             CEEECCCCCCCCHHHHHHHHHHHH-CCCCEEE-----EEECCCHHH-HHHHH----HHHHHCCCCCEEEEEECCCCCCHH
T ss_conf             701023699998899999997643-2695799-----980730899-99999----986412543106999618989989


Q ss_pred             HHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEECHHHHCCHHHHH
Q ss_conf             99986257776544547999999840788329985067731701689
Q gi|254780905|r   93 DELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPATLRRTYTSN  139 (271)
Q Consensus        93 ~~l~~~~~~ipiigii~~~~~a~~~~~~~~VgiLAT~~Ti~s~~y~~  139 (271)
                      ..++.-     ..++  ++.+. ...+.++|.++.+.-|--...+.+
T Consensus       232 ~R~~aa-----~~a~--aiAEy-Frd~G~~VLl~~DslTR~A~A~RE  270 (439)
T PRK06936        232 ERAKAG-----FVAT--SIAEY-FRDQGKRVLLLMDSVTRFARAQRE  270 (439)
T ss_pred             HHHHHH-----HHHH--HHHHH-HHHCCCCEEEEECCHHHHHHHHHH
T ss_conf             999999-----8877--88999-985898489993567899999989


No 189
>TIGR01968 minD_bact septum site-determining protein MinD; InterPro: IPR010223   This entry describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. In Escherichia coli, the cell division site is determined by the cooperative activity of min operon products MinC, MinD, and MinE . MinD is a membrane-associated ATPase and is a septum site-determining factor through the activation and regulation of MinC and MinE. MinD is also known to undergo a rapid pole-to-pole oscillation movement in vivo as observed by fluorescent microscopy. In plants, chloroplast division requires the dimerisation of stromal MinD . The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.; GO: 0016887 ATPase activity, 0000918 selection of site for barrier septum formation.
Probab=27.26  E-value=19  Score=16.69  Aligned_cols=54  Identities=15%  Similarity=0.252  Sum_probs=30.0

Q ss_pred             HHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEECHHHHCCHHHHHHHHHCCC
Q ss_conf             8999862577765445479999998407883299850677317016899851278
Q gi|254780905|r   92 KDELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPATLRRTYTSNLIHSYVS  146 (271)
Q Consensus        92 ~~~l~~~~~~ipiigii~~~~~a~~~~~~~~VgiLAT~~Ti~s~~y~~~i~~~~~  146 (271)
                      .+++++.. ++|.||+||.=...+..|+.|-=.+|--.-|-.+..|++.-.|...
T Consensus       195 i~Dv~~~L-~i~LiGviPeD~~iI~stN~GEP~vl~~~L~~~g~Af~~~ArRi~G  248 (272)
T TIGR01968       195 IDDVLEIL-SIPLIGVIPEDEEIIVSTNKGEPVVLNKKLSRAGKAFENIARRILG  248 (272)
T ss_pred             HHHHHHHC-CCCCEEEECCCCCEEEEECCCEEEEECCCCCHHHHHHHHHHHHHCC
T ss_conf             89999860-8861686329986576645614354460026167889999875348


No 190
>pfam11084 DUF2621 Protein of unknown function (DUF2621). This family is conserved in the Bacillaceae family. Several members are named as YneK. The function is not known.
Probab=27.21  E-value=34  Score=14.95  Aligned_cols=19  Identities=26%  Similarity=0.565  Sum_probs=17.6

Q ss_pred             CCCHHHHHHHHHHHCCCCC
Q ss_conf             9105899999999689998
Q gi|254780905|r   22 GIGGLIVLQKMRFLMPEYH   40 (271)
Q Consensus        22 GiGGLtv~~~l~~~lP~~~   40 (271)
                      .|||.=.+|+..++||.+|
T Consensus        22 ~IGGfFMFRKFLKrlPKeD   40 (141)
T pfam11084        22 AIGGFFMFRKFLKRLPKED   40 (141)
T ss_pred             HHHHHHHHHHHHHHCCCCC
T ss_conf             9867999999998687202


No 191
>KOG1374 consensus
Probab=26.91  E-value=46  Score=14.13  Aligned_cols=71  Identities=20%  Similarity=0.326  Sum_probs=43.8

Q ss_pred             ECCCCHHHHHHHHHHHCCCCCE-EEEECCCCCCCCCCCHHHHHHHHH--HHHHHHHHCCCCCEEEEECCCCC-HHHHHHH
Q ss_conf             7791058999999996899989-999415789898989899999999--99999862169848997176202-6338999
Q gi|254780905|r   20 DSGIGGLIVLQKMRFLMPEYHF-IYVADDVGFPYGNWEDHALKKRLM--FLFSDILDKYQPVLSVIACNTAF-TLIKDEL   95 (271)
Q Consensus        20 DSGiGGLtv~~~l~~~lP~~~~-iY~~D~~~~PYG~ks~~~I~~~~~--~~~~~ll~k~~~~~IVIACNTas-a~~~~~l   95 (271)
                      -||+|.+ ++..|..+.|+-=+ -|    -=|||++-+.+-+..--.  =.+.+|.+  ..|++|+-=|||- -.+.+.+
T Consensus       146 GSGlGS~-llErL~drypkkliqty----sVfPn~d~ssdVVVQpYNsiLtL~rL~~--nsD~vVVlDN~AL~ria~~~l  218 (448)
T KOG1374         146 GSGLGSF-LLERLNDRYPKKLVQTY----SVFPNQDESSDVVVQPYNSILTLKRLTE--NSDCVVVLDNTALHRIAADRL  218 (448)
T ss_pred             CCCHHHH-HHHHHHHHCHHHHHEEE----EECCCCCCCCCEEEECCHHHHHHHHHHH--CCCEEEEECCHHHHHHHHHHH
T ss_conf             7656799-99999875305352166----6556898756458733167888998862--888599943288888888871


Q ss_pred             HH
Q ss_conf             86
Q gi|254780905|r   96 RS   97 (271)
Q Consensus        96 ~~   97 (271)
                      +-
T Consensus       219 ~i  220 (448)
T KOG1374         219 HI  220 (448)
T ss_pred             CC
T ss_conf             58


No 192
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=26.79  E-value=46  Score=14.12  Aligned_cols=194  Identities=10%  Similarity=0.038  Sum_probs=94.0

Q ss_pred             HHHHHCCCCCEEEEECCCCCCCCCCCHHHH--H-HHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCC
Q ss_conf             999968999899994157898989898999--9-9999999998621698489971762026338999862577765445
Q gi|254780905|r   31 KMRFLMPEYHFIYVADDVGFPYGNWEDHAL--K-KRLMFLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGA  107 (271)
Q Consensus        31 ~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I--~-~~~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~~~~~ipiigi  107 (271)
                      ...++.-..++.-+  -=++||.-..+..-  + -.+.+.+..+++..|++-|+ ..+   .+ .+.++.-| ++|+-++
T Consensus        78 dAlr~a~A~rIt~V--iPY~~YsRQDr~~~~g~~pIsak~vA~lL~~~gvdrvi-tvD---lH-~~qi~gfF-~ipv~~l  149 (319)
T PRK04923         78 DALKRASASSVTAV--IPYFGYSRQDRRMRSSRVPITAKVAAKMICAMGADRVL-TVD---LH-ADQIQGFF-DVPVDNV  149 (319)
T ss_pred             HHHHHCCCCEEEEE--ECCCCHHHCCCCCCCCCCCEEHHHHHHHHCCCCCCEEE-EEC---CC-HHHHHHHC-CCCCCCC
T ss_conf             99987588727998--32553200013346676870299999886125876279-844---88-79985405-9974541


Q ss_pred             C--HHHHH-HHHHCCCCCEEEEECHH--HHCCHHHHHHHHHCCCCCEEE--ECCCCCHHHHHH--HHHHCCC--CCHHHH
Q ss_conf             4--79999-99840788329985067--731701689985127885797--705642257877--6642677--697999
Q gi|254780905|r  108 V--PAIKQ-AAAYTQSGLISILSTPA--TLRRTYTSNLIHSYVSQCHIH--LVSSMILASRVE--EYACGIK--IKEDEI  176 (271)
Q Consensus       108 i--~~~~~-a~~~~~~~~VgiLAT~~--Ti~s~~y~~~i~~~~~~~~v~--~~~~~~lv~~iE--~~~~~~~--~~~~~~  176 (271)
                      -  |.... .....+..++-|++-..  .-+...|.+.+..  .+.-+.  ....+.-+....  ....+..  +-++.+
T Consensus       150 ~a~~~l~~~~~~~~~~~~~vvVsPD~G~~~ra~~~A~~Lg~--~~~~~~~K~R~~~~~~~~~~~~gdV~Gk~~IIVDDiI  227 (319)
T PRK04923        150 YASPLLLADIWRAYGTDNLIVVSPDVGGVVRARAVAKRLDD--ADLAIIDKRRPRANVATVMNIIGDVQGKTCVLVDDLV  227 (319)
T ss_pred             CCCHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCC--CCEEEEEEECCCCCCCEECCCCCCCCCCEEEEECCHH
T ss_conf             17299999999845987718984794288999999987089--8679998544899821102444443796699966432


Q ss_pred             --HHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHCC---------------------CCCEEEECHHHHHHHHHHH
Q ss_conf             --99999984654105887899805635889999998648---------------------9978982858999999999
Q gi|254780905|r  177 --KKEIEGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSP---------------------WPVDWLDNSDSIARRARCL  233 (271)
Q Consensus       177 --~~~l~~~l~~~~~~~~D~iILGCTHyPll~~~i~~~~~---------------------~~v~iIDpa~~va~~~~~~  233 (271)
                        -..+.+....+++.|+..+...|||--|-.+..+++..                     ++++++|-+.-+|+.+.++
T Consensus       228 dTGgTl~~aa~~Lk~~GA~~V~~~~THglfs~~A~~rl~~s~i~~ivvTnTip~~~~~~~~~kl~vlsva~llA~aI~ri  307 (319)
T PRK04923        228 DTAGTLCAAAAALKQRGALKVVAYITHPVLSGPAVDNINNSQLDELVVTDTIPLSEAARTCAKIRQLSVAELLAETIRRI  307 (319)
T ss_pred             CCCHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHCCCCEEEEECCCCCCHHHCCCCCCEEEEHHHHHHHHHHHH
T ss_conf             06512999999998759986899997976886799999708998899828965862233589838997389999999998


Q ss_pred             H
Q ss_conf             8
Q gi|254780905|r  234 L  234 (271)
Q Consensus       234 L  234 (271)
                      -
T Consensus       308 ~  308 (319)
T PRK04923        308 A  308 (319)
T ss_pred             H
T ss_conf             6


No 193
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=26.74  E-value=46  Score=14.11  Aligned_cols=84  Identities=20%  Similarity=0.219  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHHCCCCCEEEEECCCCCCCCCCC---HHHH---------------HHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf             58999999996899989999415789898989---8999---------------99999999998621698489971762
Q gi|254780905|r   25 GLIVLQKMRFLMPEYHFIYVADDVGFPYGNWE---DHAL---------------KKRLMFLFSDILDKYQPVLSVIACNT   86 (271)
Q Consensus        25 GLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ks---~~~I---------------~~~~~~~~~~ll~k~~~~~IVIACNT   86 (271)
                      |=-++++++.+.|+.+|+=+|+-+=.-=|-+|   .+|+               ..+..+.+..+++ ..+|. +|.|-.
T Consensus        17 Ga~LikaLk~~~~~~efvGvgG~~m~aeG~~sl~~~~elsvmGf~EVL~~lp~llk~~~~~~~~i~~-~kpD~-~i~IDs   94 (381)
T COG0763          17 GAGLIKALKARYPDVEFVGVGGEKMEAEGLESLFDMEELSVMGFVEVLGRLPRLLKIRRELVRYILA-NKPDV-LILIDS   94 (381)
T ss_pred             HHHHHHHHHHHCCCEEEEEECCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCE-EEEECC
T ss_conf             8999999986389838998176788865576555889987822999999889999999999999985-59988-999678


Q ss_pred             CCH--HHHHHHHHHCCCCCCCCCC-HH
Q ss_conf             026--3389998625777654454-79
Q gi|254780905|r   87 AFT--LIKDELRSTFPSMAFLGAV-PA  110 (271)
Q Consensus        87 asa--~~~~~l~~~~~~ipiigii-~~  110 (271)
                      ..-  -....+|+..|++|+|+-| |.
T Consensus        95 PdFnl~vak~lrk~~p~i~iihYV~Ps  121 (381)
T COG0763          95 PDFNLRVAKKLRKAGPKIKIIHYVSPS  121 (381)
T ss_pred             CCCCHHHHHHHHHHCCCCCEEEEECCC
T ss_conf             988649999999708999869997853


No 194
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=26.72  E-value=46  Score=14.11  Aligned_cols=40  Identities=8%  Similarity=-0.065  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHCCCCCEEEEECCCCCHHH--HHHHHHHCCCCCCCC
Q ss_conf             9999999862169848997176202633--899986257776544
Q gi|254780905|r   64 LMFLFSDILDKYQPVLSVIACNTAFTLI--KDELRSTFPSMAFLG  106 (271)
Q Consensus        64 ~~~~~~~ll~k~~~~~IVIACNTasa~~--~~~l~~~~~~ipiig  106 (271)
                      -.+.++.++.+ ++|.|++.++...+..  ++..++  .+||+|-
T Consensus        49 Q~~~ie~lI~q-gvDaIiv~p~d~~a~~~~v~~a~~--aGIpVV~   90 (274)
T cd06311          49 QNAQQDLLINR-KIDALVILPFESAPLTQPVAKAKK--AGIFVVV   90 (274)
T ss_pred             HHHHHHHHHHC-CCCEEEEECCCHHHHHHHHHHHHH--CCCEEEE
T ss_conf             99999999974-999999957977888999999998--6997999


No 195
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=26.69  E-value=42  Score=14.39  Aligned_cols=16  Identities=25%  Similarity=0.339  Sum_probs=7.9

Q ss_pred             CCCHHHHHHHHHHHCC
Q ss_conf             6997999999998568
Q gi|254780905|r  253 SGKPDIAMRRLMQGFG  268 (271)
Q Consensus       253 T~~~~~~~~~~~~~~G  268 (271)
                      .....-|..++..+|+
T Consensus       256 ~~~kkg~~~~l~~~~~  271 (272)
T COG2894         256 EEEKKGFLARLKGGFS  271 (272)
T ss_pred             HHHHHHHHHHHHHHHC
T ss_conf             3444129999865525


No 196
>TIGR00095 TIGR00095 putative methyltransferase; InterPro: IPR004398 This is a family of conserved hypothetical proteins, which includes a putative methylase..
Probab=26.67  E-value=46  Score=14.11  Aligned_cols=40  Identities=5%  Similarity=0.058  Sum_probs=18.4

Q ss_pred             CCEEEEECHHHHCCHHHHHHHHHCCCCCEEEECCCCCHHHHHHH
Q ss_conf             83299850677317016899851278857977056422578776
Q gi|254780905|r  121 GLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSSMILASRVEE  164 (271)
Q Consensus       121 ~~VgiLAT~~Ti~s~~y~~~i~~~~~~~~v~~~~~~~lv~~iE~  164 (271)
                      .-+=+.|-.|++.    -+++.+....+...+........++|+
T Consensus        58 ~~LD~FAGsG~LG----~EALSRgA~~~~f~E~d~~~~~~l~~N   97 (210)
T TIGR00095        58 HFLDLFAGSGSLG----LEALSRGAKSAVFVEQDKKVAQTLKEN   97 (210)
T ss_pred             EEEEEECCCHHHH----HHHHHHCCCEEEEEECCHHHHHHHHHH
T ss_conf             2788540644653----766401416237873686799999999


No 197
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=26.52  E-value=46  Score=14.09  Aligned_cols=110  Identities=13%  Similarity=0.089  Sum_probs=59.2

Q ss_pred             CCEEEE-ECCCCHHHHHH-HHHHHC-CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHH
Q ss_conf             870798-77910589999-999968-999899994157898989898999999999999986216984899717620263
Q gi|254780905|r   14 NSILIF-DSGIGGLIVLQ-KMRFLM-PEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTL   90 (271)
Q Consensus        14 ~~Igif-DSGiGGLtv~~-~l~~~l-P~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~   90 (271)
                      +.+||| +||+|==+++. .+.++. .+.-.||.+      -|+|.. |+.++    ++.+.+...-+-.|+-|||++.-
T Consensus        70 Qr~~If~~~g~GKt~l~~~~i~~~~~~~~~~V~~~------IGer~r-Ev~ef----~~~~~~~~~l~~tv~v~~t~~~p  138 (274)
T cd01132          70 QRELIIGDRQTGKTAIAIDTIINQKGKKVYCIYVA------IGQKAS-TVAQV----VKTLEEHGAMEYTIVVAATASDP  138 (274)
T ss_pred             CEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEE------ECCCHH-HHHHH----HHHHHHCCCCCCCEEEECCCCCC
T ss_conf             67515588875578899999997413696599997------324522-69999----99876057620114774047787


Q ss_pred             HHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEECHHHHCCHHHHHHHH
Q ss_conf             3899986257776544547999999840788329985067731701689985
Q gi|254780905|r   91 IKDELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPATLRRTYTSNLIH  142 (271)
Q Consensus        91 ~~~~l~~~~~~ipiigii~~~~~a~~~~~~~~VgiLAT~~Ti~s~~y~~~i~  142 (271)
                      ....++     .|..++  ++.+-. ..+.++|.++-+.-|--...|.+.-.
T Consensus       139 ~~~r~~-----a~~~a~--~iAEyf-rd~Gk~VLll~DslTr~A~A~rEisl  182 (274)
T cd01132         139 APLQYL-----APYTGC--AMGEYF-MDNGKHALIIYDDLSKQAVAYRQMSL  182 (274)
T ss_pred             HHHHHH-----HHHHCC--CHHHHH-HHCCCCEEEEEECHHHHHHHHHHHHH
T ss_conf             587776-----544122--267899-87799479999788999999999999


No 198
>PRK08324 short chain dehydrogenase; Validated
Probab=26.48  E-value=46  Score=14.08  Aligned_cols=42  Identities=10%  Similarity=-0.039  Sum_probs=18.0

Q ss_pred             EEEEECCCCHHHHHH---HHHHHCCCCCEEEEECCCCCCCCCCCH
Q ss_conf             079877910589999---999968999899994157898989898
Q gi|254780905|r   16 ILIFDSGIGGLIVLQ---KMRFLMPEYHFIYVADDVGFPYGNWED   57 (271)
Q Consensus        16 IgifDSGiGGLtv~~---~l~~~lP~~~~iY~~D~~~~PYG~ks~   57 (271)
                      +++.+==+=|+...+   ++.+..|+.+=+-+.-.-.|-+|+-++
T Consensus       157 ~~~VPyvmPGF~Lak~~~~~~~~~p~~~G~vL~~HGlfTfgdtAk  201 (676)
T PRK08324        157 VGWVPYIRPGFDLALAAAEAFRANPGAEGVVLGKHGLFTWGDTAK  201 (676)
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCEECCCCHH
T ss_conf             368612378199999999999858996189970777254068879


No 199
>TIGR00339 sopT sulfate adenylyltransferase; InterPro: IPR002650 This entry consists of ATP-sulphurylase or sulphate adenylyltransferase (2.7.7.4 from EC0 some of which are part of a bifunctional polypeptide chain associated with adenosyl phosphosulphate (APS) kinase, IPR002891 from INTERPRO. Both enzymes are required for PAPS (phosphoadenosine-phosphosulphate) synthesis from inorganic sulphate . ATP sulphurylase catalyses the synthesis of adenosine-phosphosulphate APS from ATP and inorganic sulphate .; GO: 0004781 sulfate adenylyltransferase (ATP) activity, 0000103 sulfate assimilation.
Probab=26.46  E-value=18  Score=16.74  Aligned_cols=18  Identities=28%  Similarity=0.348  Sum_probs=8.5

Q ss_pred             HHHHCCHHHH-HHHHHCCC
Q ss_conf             6773170168-99851278
Q gi|254780905|r  129 PATLRRTYTS-NLIHSYVS  146 (271)
Q Consensus       129 ~~Ti~s~~y~-~~i~~~~~  146 (271)
                      +.-++-..|+ -+...+-+
T Consensus       263 P~~~R~~~y~~vl~~~y~~  281 (424)
T TIGR00339       263 PAEVRMRAYEAVLKEGYYN  281 (424)
T ss_pred             CHHHHHHHHHHHHHCCCCC
T ss_conf             6689999999987426889


No 200
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems.  Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2).  MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster.  Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=26.44  E-value=46  Score=14.08  Aligned_cols=13  Identities=15%  Similarity=0.422  Sum_probs=5.0

Q ss_pred             CCCCEEEEECCCC
Q ss_conf             4887079877910
Q gi|254780905|r   12 LQNSILIFDSGIG   24 (271)
Q Consensus        12 ~~~~IgifDSGiG   24 (271)
                      +++.|.|--+.+|
T Consensus        30 I~D~~hlvHGP~g   42 (421)
T cd01976          30 IKDMVHISHGPVG   42 (421)
T ss_pred             CCCEEEEECCCCC
T ss_conf             0557997327310


No 201
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=26.25  E-value=47  Score=14.06  Aligned_cols=172  Identities=10%  Similarity=0.062  Sum_probs=77.4

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCC-------------CCH--HHHHHHHHHCCCCCC-CCCC--HHH
Q ss_conf             9898989899999999999998621698489971762-------------026--338999862577765-4454--799
Q gi|254780905|r   50 FPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNT-------------AFT--LIKDELRSTFPSMAF-LGAV--PAI  111 (271)
Q Consensus        50 ~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNT-------------asa--~~~~~l~~~~~~ipi-igii--~~~  111 (271)
                      .||-..|-++|+++..+-...+ +.+|+|.|++ -|-             .++  ...+.++... .+|+ |+|.  +++
T Consensus        22 sp~~~~~~~~vid~A~~dA~~l-eegG~Daviv-EN~gD~Pf~k~v~~~tvaaMa~iv~~v~r~v-~iPvGvNVLrNd~v   98 (263)
T COG0434          22 SPYDAGSLEAVIDRAVRDAAAL-EEGGVDAVIV-ENYGDAPFLKDVGPETVAAMAVIVREVVREV-SIPVGVNVLRNDAV   98 (263)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHH-HHCCCCEEEE-ECCCCCCCCCCCCHHHHHHHHHHHHHHHHHC-CCCCEEEEECCCCH
T ss_conf             9455678799999999899999-8489768997-1357887777797478899999999998750-76610321026628


Q ss_pred             HHH--HHHCCCC--CE----EEEECH-HHHCCHHHH--HHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf             999--9840788--32----998506-773170168--998512788579770564225787766426776979999999
Q gi|254780905|r  112 KQA--AAYTQSG--LI----SILSTP-ATLRRTYTS--NLIHSYVSQCHIHLVSSMILASRVEEYACGIKIKEDEIKKEI  180 (271)
Q Consensus       112 ~~a--~~~~~~~--~V----giLAT~-~Ti~s~~y~--~~i~~~~~~~~v~~~~~~~lv~~iE~~~~~~~~~~~~~~~~l  180 (271)
                      ...  +.....+  ||    |+.+|+ +-+....++  +...+...++++..  . ..   +.....-..   .-+...+
T Consensus        99 aA~~IA~a~gA~FIRVN~~tg~~~tdqGiieg~A~e~~r~r~~L~~~v~vlA--D-v~---VKHa~~l~~---~~~~~~v  169 (263)
T COG0434          99 AALAIAYAVGADFIRVNVLTGAYATDQGIIEGNAAELARYRARLGSRVKVLA--D-VH---VKHAVHLGN---RSLEEAV  169 (263)
T ss_pred             HHHHHHHHCCCCEEEEEEEECEEECCCCCCCCHHHHHHHHHHHCCCCCEEEE--E-CH---HHCCCCCCC---CCHHHHH
T ss_conf             8899998607977998734342763565014448899998986167737976--1-11---321532378---6889999


Q ss_pred             HHHHHHHHCCCCCEEEECC-C--CHH--HHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHCC
Q ss_conf             9984654105887899805-6--358--89999998648997898285899999999986427
Q gi|254780905|r  181 EGCFIEKEGKRTDVIVLAC-T--HYP--LIVHVFRQLSPWPVDWLDNSDSIARRARCLLPRIN  238 (271)
Q Consensus       181 ~~~l~~~~~~~~D~iILGC-T--HyP--ll~~~i~~~~~~~v~iIDpa~~va~~~~~~L~~~~  238 (271)
                      +..   .....+|++|+-- +  |=|  =-....++..+- -.++-|+. .-+.+..+|...+
T Consensus       170 ~dt---ver~~aDaVI~tG~~TG~~~d~~el~~a~~~~~~-pvlvGSGv-~~eN~~~~l~~ad  227 (263)
T COG0434         170 KDT---VERGLADAVIVTGSRTGSPPDLEELKLAKEAVDT-PVLVGSGV-NPENIEELLKIAD  227 (263)
T ss_pred             HHH---HHCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCC-CEEEECCC-CHHHHHHHHHHCC
T ss_conf             999---9704887799956667899998999999862698-78973688-8889999998728


No 202
>pfam05378 Hydant_A_N Hydantoinase/oxoprolinase N-terminal region. This family is found at the N-terminus of the pfam01968 family.
Probab=25.70  E-value=39  Score=14.56  Aligned_cols=28  Identities=11%  Similarity=0.306  Sum_probs=18.7

Q ss_pred             CCCHHHHHHHHHHHHHHHHCCCCCEEEECCCC
Q ss_conf             76979999999998465410588789980563
Q gi|254780905|r  170 KIKEDEIKKEIEGCFIEKEGKRTDVIVLACTH  201 (271)
Q Consensus       170 ~~~~~~~~~~l~~~l~~~~~~~~D~iILGCTH  201 (271)
                      +++.++    ++..+..+++++++++...+-|
T Consensus       129 ~ld~~~----v~~~~~~l~~~gv~aiAI~~~f  156 (175)
T pfam05378       129 PLDEEA----VREALKELKDAGVEAVAVSLLH  156 (175)
T ss_pred             CCCHHH----HHHHHHHHHHCCCCEEEEEEEC
T ss_conf             489999----9999999997799899999532


No 203
>PRK04457 spermidine synthase; Provisional
Probab=25.61  E-value=48  Score=13.98  Aligned_cols=164  Identities=9%  Similarity=-0.005  Sum_probs=73.2

Q ss_pred             CCEEEEECCCCCC--CCCCCHHHHHHHHHHHHHHHHHCCCCC-EEEEECCCCCHHHHHHHHHHCCCCCCCCCC--HHHHH
Q ss_conf             9899994157898--989898999999999999986216984-899717620263389998625777654454--79999
Q gi|254780905|r   39 YHFIYVADDVGFP--YGNWEDHALKKRLMFLFSDILDKYQPV-LSVIACNTAFTLIKDELRSTFPSMAFLGAV--PAIKQ  113 (271)
Q Consensus        39 ~~~iY~~D~~~~P--YG~ks~~~I~~~~~~~~~~ll~k~~~~-~IVIACNTasa~~~~~l~~~~~~ipiigii--~~~~~  113 (271)
                      ..+++||+..-=-  .=.++..-...|+..++.+++-.-.++ ..+|.=-..| . ...+...+|+..+-.|+  |.+..
T Consensus        27 ~R~L~fg~~~~QS~m~~~~P~~L~l~Ytr~Mm~~LLf~p~Pk~vl~iGLGgGs-l-~k~~~~~~P~~~i~~VEIdp~Vi~  104 (262)
T PRK04457         27 IRSLHLGSDTIQSSMRLDRPSELVLSYSRAMMGFLLFNPRPQHILQIGLGGGS-F-AKFIDTYLPDTRQTAVEINPQVIA  104 (262)
T ss_pred             EEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHH-H-HHHHHHHCCCCEEEEEECCHHHHH
T ss_conf             89999789863823542788502128899999998658997869999257019-9-999998398675899987889999


Q ss_pred             HHHH-----CCCCCEEEEECHHHHCCHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             9984-----07883299850677317016899851278857977056422578776642677697999999999846541
Q gi|254780905|r  114 AAAY-----TQSGLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYACGIKIKEDEIKKEIEGCFIEKE  188 (271)
Q Consensus       114 a~~~-----~~~~~VgiLAT~~Ti~s~~y~~~i~~~~~~~~v~~~~~~~lv~~iE~~~~~~~~~~~~~~~~l~~~l~~~~  188 (271)
                      ++..     ....++-|+-..|-    .|-+   +......+..      ++.-............+   .++.+-..+.
T Consensus       105 vAr~~F~lP~dd~Rl~V~~~Dg~----~fv~---~~~~~~DvI~------vD~fd~~g~~~~L~t~~---Fy~~c~~~L~  168 (262)
T PRK04457        105 VARNHFELPFEDEKFEIIEADGA----EYIK---VFPASTDVIL------VDGFDGEQIVDALVTQP---FFRDCRNALS  168 (262)
T ss_pred             HHHHHCCCCCCCCCEEEEECCHH----HHHH---HCCCCCCEEE------EECCCCCCCCCCCCCHH---HHHHHHHHCC
T ss_conf             99986579999972699955389----9985---4867778899------96889888860008299---9999998649


Q ss_pred             CCCCCEEE--ECCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf             05887899--805635889999998648997898
Q gi|254780905|r  189 GKRTDVIV--LACTHYPLIVHVFRQLSPWPVDWL  220 (271)
Q Consensus       189 ~~~~D~iI--LGCTHyPll~~~i~~~~~~~v~iI  220 (271)
                      ..|+=++=  =...+|+.....+++.|+..+-++
T Consensus       169 ~~Gvlv~Nl~~~~~~~~~~l~~i~~~F~~~~~~~  202 (262)
T PRK04457        169 SDGVFVTNLWSGDKRYQRYIERLLSVFEGRVLEL  202 (262)
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHCCEEEEE
T ss_conf             8939999868899865999999999728739997


No 204
>KOG3935 consensus
Probab=25.54  E-value=48  Score=13.97  Aligned_cols=34  Identities=6%  Similarity=-0.132  Sum_probs=15.2

Q ss_pred             HHHHCCCCCEEEEE----CCCCCCCCCCCHHHHHHHHH
Q ss_conf             99968999899994----15789898989899999999
Q gi|254780905|r   32 MRFLMPEYHFIYVA----DDVGFPYGNWEDHALKKRLM   65 (271)
Q Consensus        32 l~~~lP~~~~iY~~----D~~~~PYG~ks~~~I~~~~~   65 (271)
                      ..+.+-..++.+.+    -.+-.|--.++-|+=+....
T Consensus        96 ~aee~~~q~i~~~~isg~G~~~~p~pp~TLe~k~~l~~  133 (446)
T KOG3935          96 DAEETRPQEICWSGISGGGSALLPMPPRTLEAKIRLEI  133 (446)
T ss_pred             HHHHCCHHHEEEEEEECCCEECCCCCCCCHHHHHHHHH
T ss_conf             88750523436787505732126899812888888999


No 205
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=25.46  E-value=48  Score=13.96  Aligned_cols=40  Identities=10%  Similarity=0.019  Sum_probs=26.5

Q ss_pred             HHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCC
Q ss_conf             999998621698489971762026338999862577765445
Q gi|254780905|r   66 FLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGA  107 (271)
Q Consensus        66 ~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~~~~~ipiigi  107 (271)
                      +.++.++.+ ++|.|+++.+...++. +.++..-.+||+|.+
T Consensus        48 ~~ie~~i~~-gvDaIii~p~d~~al~-~~~~a~~agIPVV~~   87 (268)
T cd06306          48 AQLEDCAAW-GADAILLGAVSPDGLN-EILQQVAASIPVIAL   87 (268)
T ss_pred             HHHHHHHHC-CCCEEEECCCCHHHHH-HHHHHHHCCCEEEEE
T ss_conf             999999983-9999998679867778-999999869829999


No 206
>pfam01583 APS_kinase Adenylylsulphate kinase. Enzyme that catalyses the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulfate. This domain contains an ATP binding P-loop motif.
Probab=25.19  E-value=49  Score=13.93  Aligned_cols=79  Identities=10%  Similarity=0.120  Sum_probs=48.0

Q ss_pred             CCCCHHHHHHHHHHHCCCC---CEEEEECCCC------CCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHH
Q ss_conf             7910589999999968999---8999941578------989898989999999999999862169848997176202633
Q gi|254780905|r   21 SGIGGLIVLQKMRFLMPEY---HFIYVADDVG------FPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLI   91 (271)
Q Consensus        21 SGiGGLtv~~~l~~~lP~~---~~iY~~D~~~------~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~   91 (271)
                      ||-|==|+.+++.+.|...   -++.=||..|      ..|..+++.+...+..+++.++ .++|. .++++..+...-.
T Consensus        11 sGsGKTTlA~~l~~~L~~~~~~~~~LDGD~~R~~l~~dlgys~~~R~~n~~r~~~lak~l-~~~g~-~VIvs~isp~~~~   88 (157)
T pfam01583        11 SGSGKSTIANALERKLFAQGISVYVLDGDNVRHGLNKDLGFSEEDRTENIRRIAEVAKLF-ADAGL-IVITSFISPYRAD   88 (157)
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH-HCCCC-EEEEECCCCCHHH
T ss_conf             999999999999999997599779976887750125777989899999999999999998-42896-5887215789999


Q ss_pred             HHHHHHHCCC
Q ss_conf             8999862577
Q gi|254780905|r   92 KDELRSTFPS  101 (271)
Q Consensus        92 ~~~l~~~~~~  101 (271)
                      -+..|+.+++
T Consensus        89 R~~~r~~~~~   98 (157)
T pfam01583        89 RDMARELHED   98 (157)
T ss_pred             HHHHHHHCCC
T ss_conf             9999986478


No 207
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; InterPro: IPR003700   The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production .; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process.
Probab=25.05  E-value=49  Score=13.91  Aligned_cols=152  Identities=14%  Similarity=0.132  Sum_probs=71.1

Q ss_pred             CCCCEEEEECCCCCCC-CCC-----CHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCC---
Q ss_conf             9998999941578989-898-----9899999999999998621698489971762026338999862577765445---
Q gi|254780905|r   37 PEYHFIYVADDVGFPY-GNW-----EDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGA---  107 (271)
Q Consensus        37 P~~~~iY~~D~~~~PY-G~k-----s~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~~~~~ipiigi---  107 (271)
                      +..|+|-+||+.++-. |--     |-+.+.=.|     +-+.|+.....||                 .|+||..=   
T Consensus        36 ~Gv~viLVGDSLgM~~lg~~~Tl~vsv~~m~yHT-----~AV~rGa~~~liv-----------------~DlPF~sY~~S   93 (267)
T TIGR00222        36 AGVDVILVGDSLGMVVLGLDSTLPVSVADMIYHT-----KAVKRGAPNALIV-----------------TDLPFMSYKES   93 (267)
T ss_pred             CCCCEEEEECCCCCEEECCCCCCCCCHHHHHHHH-----HHHHCCCCCCEEE-----------------ECCCHHHHHCC
T ss_conf             7980899732110666044776110188888788-----9985479873466-----------------33740001126


Q ss_pred             -CHHHHHHHHHCC---CCCEEEEECH-HHHCCHHHHHHHHHCCC-CCEEEE--CCCCCHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf             -479999998407---8832998506-77317016899851278-857977--056422578776642677697999999
Q gi|254780905|r  108 -VPAIKQAAAYTQ---SGLISILSTP-ATLRRTYTSNLIHSYVS-QCHIHL--VSSMILASRVEEYACGIKIKEDEIKKE  179 (271)
Q Consensus       108 -i~~~~~a~~~~~---~~~VgiLAT~-~Ti~s~~y~~~i~~~~~-~~~v~~--~~~~~lv~~iE~~~~~~~~~~~~~~~~  179 (271)
                       ..+.+.|+...+   ..-|=+=|=+ .-+      +.++.+-. .+-|..  ==+|..|...= |+.-...+++.-++.
T Consensus        94 ~~~Al~nA~~v~~e~gA~avKLEGG~P~~~------e~v~~LT~~GvpV~GH~GLtPQsV~~~G-GYk~qGk~~~~~~kL  166 (267)
T TIGR00222        94 PEQALKNAARVLQETGADAVKLEGGEPELV------ETVKALTEEGVPVVGHLGLTPQSVRLLG-GYKVQGKDEEAAKKL  166 (267)
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEECCCHHHH------HHHHHHHHCCCEEEECCCCCCCEEEECC-CEEECCCCHHHHHHH
T ss_conf             788999999997323776576207880688------9999986278458741478873340057-400027887888889


Q ss_pred             HHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf             999846541058878998056358899999986489978982
Q gi|254780905|r  180 IEGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSPWPVDWLD  221 (271)
Q Consensus       180 l~~~l~~~~~~~~D~iILGCTHyPll~~~i~~~~~~~v~iID  221 (271)
                      |+..| .+.+.|+-.|||=|==-||-++.- +.+  .|++|-
T Consensus       167 L~dAl-~LeeAGv~lLVLE~vp~eLA~~It-e~L--~IP~IG  204 (267)
T TIGR00222       167 LEDAL-ALEEAGVQLLVLECVPAELAAKIT-EKL--KIPVIG  204 (267)
T ss_pred             HHHHH-HHHHHHHHHHHHCCCCHHHHHHHH-HCC--CCCEEE
T ss_conf             99999-999876674353276825788897-307--998674


No 208
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=25.03  E-value=49  Score=13.91  Aligned_cols=37  Identities=19%  Similarity=0.025  Sum_probs=20.7

Q ss_pred             EEECCCCHHHHHHHHHHHC--CCCCEEEECHHHHHHHHHHHH
Q ss_conf             9980563588999999864--899789828589999999998
Q gi|254780905|r  195 IVLACTHYPLIVHVFRQLS--PWPVDWLDNSDSIARRARCLL  234 (271)
Q Consensus       195 iILGCTHyPll~~~i~~~~--~~~v~iIDpa~~va~~~~~~L  234 (271)
                      -+||.  .|.=. .+++.-  +.++-..||....|+.-.++-
T Consensus       204 ~~l~~--IP~d~-~v~EA~~~g~pi~~~~P~S~~A~ay~~LA  242 (270)
T cd02040         204 QMIHF--VPRDN-VVQRAELRGKTVIEYDPESKQADEYRELA  242 (270)
T ss_pred             CEEEE--CCCCH-HHHHHHHCCCEEEEECCCCHHHHHHHHHH
T ss_conf             52877--79971-78751342970799798998999999999


No 209
>TIGR01367 pyrE_Therm orotate phosphoribosyltransferase; InterPro: IPR006273   This group of sequences are a distinct clade of orotate phosphoribosyltransferases. Members include the experimentally determined example from Thermus aquaticus and additional examples from Caulobacter crescentus, Helicobacter pylori (Campylobacter pylori), Mesorhizobium loti, and related species. ; GO: 0004588 orotate phosphoribosyltransferase activity, 0019856 pyrimidine base biosynthetic process.
Probab=24.93  E-value=49  Score=13.90  Aligned_cols=16  Identities=19%  Similarity=0.409  Sum_probs=6.4

Q ss_pred             HHHHHHHHCCCCCEEE
Q ss_conf             9999999689998999
Q gi|254780905|r   28 VLQKMRFLMPEYHFIY   43 (271)
Q Consensus        28 v~~~l~~~lP~~~~iY   43 (271)
                      |.|+|.+.+|+...||
T Consensus        76 ~AR~L~etlPd~R~iF   91 (205)
T TIGR01367        76 VARALSETLPDVRSIF   91 (205)
T ss_pred             HHHHHHHCCCCCCEEE
T ss_conf             9987410068885267


No 210
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=24.86  E-value=50  Score=13.89  Aligned_cols=57  Identities=18%  Similarity=0.202  Sum_probs=34.6

Q ss_pred             CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCC
Q ss_conf             989999415789898989899999999999998621698489971762026338999862577765445
Q gi|254780905|r   39 YHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGA  107 (271)
Q Consensus        39 ~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~~~~~ipiigi  107 (271)
                      .++++ .|+..-|          ..+.+..++|+++.++.+|+=+++|..+.+...+-++. .+|+++.
T Consensus        41 ielv~-~D~~~~p----------~~a~~~a~~Li~~~~V~aviG~~~S~~~~A~~~~~~~~-~vp~i~~   97 (347)
T cd06335          41 LELVE-RDDRGNP----------ARGLQNAQELAADEKVVAVLGGLHTPVALANLEFIQQN-KIPLIGP   97 (347)
T ss_pred             EEEEE-ECCCCCH----------HHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHC-CEEEECC
T ss_conf             79998-4799998----------99999999999549926874577722345532157757-9438636


No 211
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=24.84  E-value=50  Score=13.89  Aligned_cols=78  Identities=17%  Similarity=0.177  Sum_probs=35.4

Q ss_pred             HHHHHHHHHCCCCCEEEEECCC--CCHHHHHHHHHHCCCCCCCCC------------C-----HHHHHH----HHH-CCC
Q ss_conf             9999998621698489971762--026338999862577765445------------4-----799999----984-078
Q gi|254780905|r   65 MFLFSDILDKYQPVLSVIACNT--AFTLIKDELRSTFPSMAFLGA------------V-----PAIKQA----AAY-TQS  120 (271)
Q Consensus        65 ~~~~~~ll~k~~~~~IVIACNT--asa~~~~~l~~~~~~ipiigi------------i-----~~~~~a----~~~-~~~  120 (271)
                      .+.++.++.+ +++.|++....  .....++.+++.  ++|++-+            +     .+...+    +.. .+.
T Consensus        45 ~~~i~~~~~~-~vdgiI~~~~~~~~~~~~~~~~~~~--~iPvV~~d~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~~g~  121 (267)
T cd01536          45 IQQIEDLIAQ-GVDGIIISPVDSAALTPALKKANAA--GIPVVTVDSDIDGGNRLAYVGTDNYEAGRLAGEYLAKLLGGK  121 (267)
T ss_pred             HHHHHHHHHC-CCCEEEEECCCCHHHHHHHHHHHHC--CCCEEEEECCCCCCCCCEEEECCHHHHHHHHHHHHHHHCCCC
T ss_conf             9999999975-9999999315841558999999987--996999825667888645996288999999999999974999


Q ss_pred             CCEEEEECHHHH-----CCHHHHHHHHHCC
Q ss_conf             832998506773-----1701689985127
Q gi|254780905|r  121 GLISILSTPATL-----RRTYTSNLIHSYV  145 (271)
Q Consensus       121 ~~VgiLAT~~Ti-----~s~~y~~~i~~~~  145 (271)
                      ++|+++..+...     +-.-|.+.+++.+
T Consensus       122 ~~i~~i~g~~~~~~~~~R~~Gf~~al~~~~  151 (267)
T cd01536         122 GKVAIIEGPPGSSNAQERVKGFRDALKEYP  151 (267)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf             479995489988689999999999998455


No 212
>COG4475 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.79  E-value=50  Score=13.88  Aligned_cols=57  Identities=19%  Similarity=0.396  Sum_probs=31.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECC---CCCHHHHHHHHHHCCCCCCCCCCHH
Q ss_conf             9898989999999999999862169848997176---2026338999862577765445479
Q gi|254780905|r   52 YGNWEDHALKKRLMFLFSDILDKYQPVLSVIACN---TAFTLIKDELRSTFPSMAFLGAVPA  110 (271)
Q Consensus        52 YG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACN---Tasa~~~~~l~~~~~~ipiigii~~  110 (271)
                      -|.-|.-||-+.....+...+++-|+.+-+=+|-   -|-.. .....+.+ ..++++++|-
T Consensus        41 IGt~sS~evae~i~~~l~~~~~~tGv~lA~Q~CEHlNRAlvv-Er~~ae~~-~~e~VsvvP~  100 (180)
T COG4475          41 IGTVSSMEVAETIVSALLDVLKKTGVHLAFQGCEHLNRALVV-EREVAEPF-GLEIVSVVPV  100 (180)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHH-HHHHHCCC-CCEEEEEECC
T ss_conf             276215889999999999998636628985016665367622-08553305-8706886404


No 213
>PRK05922 type III secretion system ATPase; Validated
Probab=24.78  E-value=50  Score=13.88  Aligned_cols=108  Identities=9%  Similarity=0.059  Sum_probs=52.2

Q ss_pred             CCEEEE-ECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHH
Q ss_conf             870798-7791058999999996899989999415789898989899999999999998621698489971762026338
Q gi|254780905|r   14 NSILIF-DSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIK   92 (271)
Q Consensus        14 ~~Igif-DSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~   92 (271)
                      ..|||| |||+|==+.+..+.+.- +.++.-+     +.-|+|.. |+.++..+.    .+...-+--|+-++|++....
T Consensus       158 QR~gIf~g~GvGKt~Ll~~ia~~~-~~~v~V~-----alIGeR~r-Ev~efie~~----~~~~~~~~tvvv~atsd~p~~  226 (434)
T PRK05922        158 QRIGVFSEPGSGKSSLLSTIAKGS-KSTINVI-----ALIGERGR-EVREYIEQH----KEGLKAQRTIIIASPAHETAP  226 (434)
T ss_pred             CEEEECCCCCCCHHHHHHHHHHCC-CCCEEEE-----EEEEEEHH-HHHHHHHHH----HHCCCCCEEEEEEECCCCCHH
T ss_conf             677730799997899998676536-7875999-----84551389-999999986----613452103787503778878


Q ss_pred             HHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEECHHHHCCHHHHHH
Q ss_conf             999862577765445479999998407883299850677317016899
Q gi|254780905|r   93 DELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPATLRRTYTSNL  140 (271)
Q Consensus        93 ~~l~~~~~~ipiigii~~~~~a~~~~~~~~VgiLAT~~Ti~s~~y~~~  140 (271)
                      ..++.     |..++  ++.+.. ..+.++|.++-+.-|--...|.+.
T Consensus       227 ~r~~a-----~~~a~--aiAEyf-rd~G~~VLl~~Dsltr~A~A~REi  266 (434)
T PRK05922        227 TKVIA-----GRAAM--TIAEYF-RDQGHRVLFIMDSLSRWIAALQEV  266 (434)
T ss_pred             HHHHH-----HHHHH--HHHHHH-HHCCCCEEEEECCHHHHHHHHHHH
T ss_conf             88999-----98876--799999-977996799954788999999899


No 214
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase; InterPro: IPR010237   This family of proteins includes the SDT1/SSM1 gene from yeast, which has been shown to code for a pyrimidine (UMP/CMP) 5'nucleotidase. The family spans plants, fungi and bacteria. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily..
Probab=24.74  E-value=50  Score=13.88  Aligned_cols=30  Identities=20%  Similarity=0.377  Sum_probs=18.9

Q ss_pred             CCCCCCCCEEEEECCCHHHHHHHHHHHCCCC
Q ss_conf             3457788779996699799999999856888
Q gi|254780905|r  240 HQTRVFDDHALFLSGKPDIAMRRLMQGFGLK  270 (271)
Q Consensus       240 ~~~~~~~~~~f~~T~~~~~~~~~~~~~~G~~  270 (271)
                      .+|...++.-+||+|+.. ..+++.++||+.
T Consensus        99 pqsGK~~Rk~iFTN~~~~-Ha~r~l~~LGi~  128 (205)
T TIGR01993        99 PQSGKKGRKIIFTNGDRA-HARRALNRLGIE  128 (205)
T ss_pred             HHCCCCCCEEEEECCCHH-HHHHHHHHCCHH
T ss_conf             412655556776158789-999999864721


No 215
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=24.74  E-value=50  Score=13.88  Aligned_cols=56  Identities=11%  Similarity=0.026  Sum_probs=31.3

Q ss_pred             CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHH-HHHHHHHCCCCCCCC
Q ss_conf             98999941578989898989999999999999862169848997176202633-899986257776544
Q gi|254780905|r   39 YHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLI-KDELRSTFPSMAFLG  106 (271)
Q Consensus        39 ~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~-~~~l~~~~~~ipiig  106 (271)
                      .+++ +.|+..-|          .......++|+++.++.+|+=+..+..+.+ ...+-++. .+|+|+
T Consensus        41 ielv-~~D~~~~p----------~~a~~~a~~Lv~~~~V~aviG~~~S~~~~a~~~~v~~~~-~v~~is   97 (312)
T cd06346          41 VTLV-TADTQTDP----------AAGVAAATKLVNVDGVPGIVGAACSGVTIAALTSVAVPN-GVVMIS   97 (312)
T ss_pred             EEEE-EECCCCCH----------HHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHC-CCCEEC
T ss_conf             8999-82599998----------999999998764088069746766188898899999865-981762


No 216
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=24.66  E-value=36  Score=14.77  Aligned_cols=28  Identities=21%  Similarity=0.414  Sum_probs=16.9

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf             707987791058999999996899989999415
Q gi|254780905|r   15 SILIFDSGIGGLIVLQKMRFLMPEYHFIYVADD   47 (271)
Q Consensus        15 ~IgifDSGiGGLtv~~~l~~~lP~~~~iY~~D~   47 (271)
                      .+-+| ||+||++.-  +.+.  ..+.++.-|.
T Consensus         3 v~dLF-sG~GG~s~G--l~~a--G~~~~~a~e~   30 (275)
T cd00315           3 VIDLF-AGIGGFRLG--LEKA--GFEIVAANEI   30 (275)
T ss_pred             EEEEC-CCCCHHHHH--HHHC--CCEEEEEEEC
T ss_conf             99976-780789999--9986--9989999968


No 217
>TIGR01036 pyrD_sub2 dihydroorotate oxidase; InterPro: IPR005719   Dihydroorotate dehydrogenase (1.3.3.1 from EC) (DHOdehase) catalyzes the fourth step in the de novo biosynthesis of pyrimidine, the conversion of dihydroorotate into orotate. DHOdehase is a ubiquitous FAD flavoprotein. In bacteria (gene pyrD), DHOdease is located on the inner side of the cytosolic membrane. In some yeasts, such as in Saccharomyces cerevisiae (gene URA1, subfamily 2), it is a cytosolic protein while in other eukaryotes it is found in the mitochondria .    This model describes dihydroorotate dehydrogenase subfamily 2 and includes members from bacteria and eukaryotes. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus, however subfamily 2 has a longer N-terminal region.; GO: 0004158 dihydroorotate oxidase activity, 0006207 'de novo' pyrimidine base biosynthetic process, 0016020 membrane.
Probab=24.39  E-value=47  Score=14.06  Aligned_cols=23  Identities=22%  Similarity=0.362  Sum_probs=15.6

Q ss_pred             HHCCCCCEEEEECHHHHCCHH-HH
Q ss_conf             840788329985067731701-68
Q gi|254780905|r  116 AYTQSGLISILSTPATLRRTY-TS  138 (271)
Q Consensus       116 ~~~~~~~VgiLAT~~Ti~s~~-y~  138 (271)
                      ..-+.+-=||+||..||.... -+
T Consensus       244 ~~v~~~~dG~IATNTT~sR~~Gv~  267 (370)
T TIGR01036       244 SAVELGIDGIIATNTTVSRDLGVT  267 (370)
T ss_pred             HHHHCCCCEEEEECCEECCCCCCC
T ss_conf             998718984898445102520025


No 218
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=24.36  E-value=51  Score=13.83  Aligned_cols=37  Identities=16%  Similarity=0.243  Sum_probs=27.2

Q ss_pred             CCCCEEEECCC---CHHHHHHHHHHHCCCCCEE--EECHHHHH
Q ss_conf             58878998056---3588999999864899789--82858999
Q gi|254780905|r  190 KRTDVIVLACT---HYPLIVHVFRQLSPWPVDW--LDNSDSIA  227 (271)
Q Consensus       190 ~~~D~iILGCT---HyPll~~~i~~~~~~~v~i--IDpa~~va  227 (271)
                      ..+|.+|-|+=   |+-=+...|++..|+ +++  +||...+.
T Consensus       168 ~~~d~fVagvGTGGTitGvar~Lk~~~p~-i~iv~vdP~~S~~  209 (300)
T COG0031         168 GKVDAFVAGVGTGGTITGVARYLKERNPN-VRIVAVDPEGSVL  209 (300)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHHCCC-CEEEEECCCCCCC
T ss_conf             99998999378526589999999862898-3799977788855


No 219
>pfam01866 Diphthamide_syn Putative diphthamide synthesis protein. Human DPHL2 is a candidate tumour suppressor gene. DPH2 from yeast, which confers resistance to diphtheria toxin has been found to be involved in diphthamide synthesis. Diphtheria toxin inhibits eukaryotic protein synthesis by ADP-ribosylating diphthamide, a posttranslationally modified histidine residue present in EF2. The exact function of the members of this family is unknown.
Probab=24.31  E-value=51  Score=13.82  Aligned_cols=29  Identities=14%  Similarity=0.177  Sum_probs=14.5

Q ss_pred             HHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHH
Q ss_conf             9999999968999899994157898989898999
Q gi|254780905|r   27 IVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHAL   60 (271)
Q Consensus        27 tv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I   60 (271)
                      .|...|.+.  ..+++-+||+.   ||.=.-+++
T Consensus        11 ~ia~~l~~~--~~~v~Il~D~t---YGaCcvD~~   39 (300)
T pfam01866        11 EIADILEEF--GEEVIISGDPT---YGACDIDDY   39 (300)
T ss_pred             HHHHHHHHC--CCEEEEEECCC---CCCCCCCHH
T ss_conf             999999854--97499990895---016767888


No 220
>COG4914 Predicted nucleotidyltransferase [General function prediction only]
Probab=24.30  E-value=51  Score=13.82  Aligned_cols=16  Identities=19%  Similarity=0.335  Sum_probs=7.2

Q ss_pred             HHHHHHHCCCCCEEEEE
Q ss_conf             99998621698489971
Q gi|254780905|r   67 LFSDILDKYQPVLSVIA   83 (271)
Q Consensus        67 ~~~~ll~k~~~~~IVIA   83 (271)
                      ...-|+++ +.++++|.
T Consensus        13 vl~~L~d~-g~~FviIG   28 (190)
T COG4914          13 VLKSLNDK-GVEFVIIG   28 (190)
T ss_pred             HHHHHHHC-CEEEEEEC
T ss_conf             99999854-80899987


No 221
>PRK00889 adenylylsulfate kinase; Provisional
Probab=24.17  E-value=51  Score=13.80  Aligned_cols=88  Identities=13%  Similarity=0.197  Sum_probs=49.6

Q ss_pred             CCCCEEEEE---CCCCHHHHHHHHHHHCCCC---CEEEEECCCCC------CCCCCCHHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf             488707987---7910589999999968999---89999415789------89898989999999999999862169848
Q gi|254780905|r   12 LQNSILIFD---SGIGGLIVLQKMRFLMPEY---HFIYVADDVGF------PYGNWEDHALKKRLMFLFSDILDKYQPVL   79 (271)
Q Consensus        12 ~~~~IgifD---SGiGGLtv~~~l~~~lP~~---~~iY~~D~~~~------PYG~ks~~~I~~~~~~~~~~ll~k~~~~~   79 (271)
                      |++++.|+=   ||-|==|+.+++.+.|...   -++.=||..|.      -|...++.+-.++..+++.++ .++|. .
T Consensus         1 ~~kg~viWltGlsgSGKTTia~~l~~~L~~~~~~~~~LDGD~lR~~l~~~lgfs~~dR~~n~~r~~~la~~l-~~~g~-~   78 (175)
T PRK00889          1 MQRGVTVWFTGLSGAGKTTISHALAEKLRARGYPVEVLDGDIVRTNLSKGLGFSKEDRDTNIRRIGFVAHLL-TRHGV-I   78 (175)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH-HHCCC-E
T ss_conf             998889998898999999999999999998699679977688887536788989899999999999999999-81898-6


Q ss_pred             EEEECCCCCHHHHHHHHHHCCC
Q ss_conf             9971762026338999862577
Q gi|254780905|r   80 SVIACNTAFTLIKDELRSTFPS  101 (271)
Q Consensus        80 IVIACNTasa~~~~~l~~~~~~  101 (271)
                      ++++.-+...-.-+..|+.+++
T Consensus        79 vIvs~isp~~~~R~~~r~~~~~  100 (175)
T PRK00889         79 VLVSAISPYRETREEVRGTIGN  100 (175)
T ss_pred             EEEEECCCCHHHHHHHHHHCCC
T ss_conf             8885047999999999985787


No 222
>PRK06705 argininosuccinate lyase; Provisional
Probab=24.05  E-value=51  Score=13.79  Aligned_cols=85  Identities=15%  Similarity=0.164  Sum_probs=42.2

Q ss_pred             HHHHHHHHHCCCCCEEEECCCCHHHHHHH-HHHHCCCCCEEEECHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCHHH
Q ss_conf             99984654105887899805635889999-99864899789828589999999998642733457788779996699799
Q gi|254780905|r  180 IEGCFIEKEGKRTDVIVLACTHYPLIVHV-FRQLSPWPVDWLDNSDSIARRARCLLPRINTHQTRVFDDHALFLSGKPDI  258 (271)
Q Consensus       180 l~~~l~~~~~~~~D~iILGCTHyPll~~~-i~~~~~~~v~iIDpa~~va~~~~~~L~~~~~~~~~~~~~~~f~~T~~~~~  258 (271)
                      +...+..+-.+..|+++-|-||+---.+. |...      +.-=++.+.+...++..-....+..+.|...+.-|+-|-.
T Consensus       142 l~~~l~~~A~~~~~timPgYTHlQ~AQP~t~gh~------l~a~~~~l~RD~~Rl~~~~~r~n~sPLGa~AlaGt~~piD  215 (502)
T PRK06705        142 LQESILQLAADHKETIMPAYTHTQPAQPTTFGHY------TLAIYDTMQRDLERMKKTYKLLNQSPMGAAALSTTSFPIK  215 (502)
T ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCCEECHHHHH------HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCC
T ss_conf             9999999999756863236444631101069899------9999999999999999999985048731001257888778


Q ss_pred             HHHHHHHHCCCCC
Q ss_conf             9999998568889
Q gi|254780905|r  259 AMRRLMQGFGLKS  271 (271)
Q Consensus       259 ~~~~~~~~~G~~~  271 (271)
                       ..+..+.+||+.
T Consensus       216 -R~~~A~lLGF~~  227 (502)
T PRK06705        216 -RERVADLLGFTN  227 (502)
T ss_pred             -HHHHHHHCCCCC
T ss_conf             -899998779998


No 223
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=24.03  E-value=51  Score=13.79  Aligned_cols=86  Identities=10%  Similarity=0.105  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCC-CC--CHHHHHHHHHCCCCCEEEEECHHHHCCHHHHHH
Q ss_conf             999999986216984899717620263389998625777654-45--479999998407883299850677317016899
Q gi|254780905|r   64 LMFLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFL-GA--VPAIKQAAAYTQSGLISILSTPATLRRTYTSNL  140 (271)
Q Consensus        64 ~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~~~~~ipii-gi--i~~~~~a~~~~~~~~VgiLAT~~Ti~s~~y~~~  140 (271)
                      +=+++.+++++++...+++=-|-..   .+.+|+ + +.|++ |-  -+.+-.++... .-++-|++.+-.-.+..--+.
T Consensus       411 ~Gq~var~L~~~gi~~vviD~d~~~---V~~~r~-~-G~~v~yGDat~~~vL~~AGi~-~A~~vViai~d~~~~~~iv~~  484 (602)
T PRK03659        411 FGQVIGRLLMANKMRITVLERDISA---VNLMRK-Y-GYKVYYGDATQLELLRAAGAE-KAEAIVITCNEPEDTMKLVEL  484 (602)
T ss_pred             HHHHHHHHHHHCCCCEEEEECCHHH---HHHHHH-C-CCEEEEECCCCHHHHHHCCCC-CCCEEEEEECCHHHHHHHHHH
T ss_conf             6899999999789998999786799---999997-8-990897589999999867904-058899982989999999999


Q ss_pred             HHHCCCCCEEEECCC
Q ss_conf             851278857977056
Q gi|254780905|r  141 IHSYVSQCHIHLVSS  155 (271)
Q Consensus       141 i~~~~~~~~v~~~~~  155 (271)
                      .++.+|+..|...+-
T Consensus       485 ~r~~~P~l~I~aRar  499 (602)
T PRK03659        485 CQQHFPHLHILARAR  499 (602)
T ss_pred             HHHHCCCCEEEEEEC
T ss_conf             998786996999869


No 224
>TIGR01366 serC_3 phosphoserine aminotransferase, putative; InterPro: IPR006272   These sequences represent a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria. ; GO: 0009058 biosynthetic process.
Probab=23.94  E-value=30  Score=15.29  Aligned_cols=57  Identities=26%  Similarity=0.421  Sum_probs=35.4

Q ss_pred             CEEEEE--CCCCHHHHHHHHHHHCCCCCEEEEECCCCCCC------CCCCHHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf             707987--79105899999999689998999941578989------8989899999999999998621698489
Q gi|254780905|r   15 SILIFD--SGIGGLIVLQKMRFLMPEYHFIYVADDVGFPY------GNWEDHALKKRLMFLFSDILDKYQPVLS   80 (271)
Q Consensus        15 ~IgifD--SGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PY------G~ks~~~I~~~~~~~~~~ll~k~~~~~I   80 (271)
                      ...+.|  ||-|||.|      -..+.|.+||+-++.|--      +-.|+..+. |..++-.  -.++-++++
T Consensus       157 ~lv~~datsGaGGlPv------di~~~d~yyf~Pqk~fasdGGlW~~~~sPaa~~-r~e~~~a--~~r~~P~fl  221 (362)
T TIGR01366       157 ALVVIDATSGAGGLPV------DIKETDVYYFAPQKSFASDGGLWLAVMSPAALE-RIEKIAA--SGRFVPEFL  221 (362)
T ss_pred             EEEEEECCCCCCCCCE------EECCCCEEEECCCCCCCCCCCCHHHHHCHHHHH-HHHHHHH--CCCCCCHHH
T ss_conf             0799974678887520------000261355235422123553023152558899-8887652--256340243


No 225
>PRK11106 queuosine biosynthesis protein QueC; Provisional
Probab=23.52  E-value=52  Score=13.72  Aligned_cols=53  Identities=17%  Similarity=0.280  Sum_probs=36.2

Q ss_pred             CCCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             488707987791058999999996899989999415789898989899999999999998
Q gi|254780905|r   12 LQNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDI   71 (271)
Q Consensus        12 ~~~~IgifDSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~l   71 (271)
                      |++.+.+|-.|+-.-|.+....+...+..      ...|=||.|...|+. .+.++++.+
T Consensus         1 MkkavVLlSGGlDStt~L~~a~~~~~~v~------alsfdYGQrh~~El~-~A~~ia~~~   53 (231)
T PRK11106          1 MKRAVVVFSGGQDSTTCLIQALQQYDEVH------CITFDYGQRHRAEID-VARELALKL   53 (231)
T ss_pred             CCEEEEEECCCHHHHHHHHHHHHCCCEEE------EEEEECCCCCHHHHH-HHHHHHHHC
T ss_conf             98089990787899999999998199499------998777867199999-999999985


No 226
>COG0035 Upp Uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=23.41  E-value=53  Score=13.71  Aligned_cols=146  Identities=13%  Similarity=0.109  Sum_probs=64.5

Q ss_pred             CHHHHHHHHHHHHHHHHHCCCCC------EEEEECCCCCHHHHHHHHHHCCCCCCC----CCCHHHHHHHHHCCCCCEEE
Q ss_conf             98999999999999986216984------899717620263389998625777654----45479999998407883299
Q gi|254780905|r   56 EDHALKKRLMFLFSDILDKYQPV------LSVIACNTAFTLIKDELRSTFPSMAFL----GAVPAIKQAAAYTQSGLISI  125 (271)
Q Consensus        56 s~~~I~~~~~~~~~~ll~k~~~~------~IVIACNTasa~~~~~l~~~~~~ipii----gii~~~~~a~~~~~~~~Vgi  125 (271)
                      +..+.+.++.++...+.....-+      -|--++.++....+.  .....-+||+    +|++++.......+.++||+
T Consensus        25 ~~~~Fr~~~~ei~~lL~yEa~~~l~~e~~~ieTP~~~~~~~~~~--~~~i~~V~ILRAGl~m~~gl~~~~P~a~vG~ig~  102 (210)
T COG0035          25 GTKEFRELLDEIGRLLAYEATRDLPLEKVEIETPLGPTEGVQIA--GKKIVIVPILRAGLGMVEGLLKLIPSARVGHIGI  102 (210)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEC--CCCEEEEEEEECCCCHHHHHHHHCCCCEEEEEEE
T ss_conf             91899999999999999998576860589997798635653654--8827999986245428899998697663889888


Q ss_pred             EECHHHHCCHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH-HCCCCCEEEECCCCHHH
Q ss_conf             85067731701689985127885797705642257877664267769799999999984654-10588789980563588
Q gi|254780905|r  126 LSTPATLRRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYACGIKIKEDEIKKEIEGCFIEK-EGKRTDVIVLACTHYPL  204 (271)
Q Consensus       126 LAT~~Ti~s~~y~~~i~~~~~~~~v~~~~~~~lv~~iE~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~D~iILGCTHyPl  204 (271)
                      ---+-|.+-..|-..+-+...+-.| -+..|.|+.            ...+-..++ .|... ...++-.+.+=|  .|-
T Consensus       103 ~Rdeet~~p~~yy~KLP~~~~~~~v-iv~DPMLAT------------G~s~i~ai~-~L~~~G~~~~I~~v~~vA--ape  166 (210)
T COG0035         103 YRDEETLEPVLYYEKLPEDIDERTV-IVLDPMLAT------------GGSAIAAID-LLKKRGGPKNIKVVSLVA--APE  166 (210)
T ss_pred             EECCCCCCEEHHHHHCCCCCCCCEE-EEECCHHHC------------CHHHHHHHH-HHHHHCCCCEEEEEEEEE--CHH
T ss_conf             8437667600358758986468859-997861412------------676999999-999718975289999996--489


Q ss_pred             HHHHHHHHCCCCCEEE
Q ss_conf             9999998648997898
Q gi|254780905|r  205 IVHVFRQLSPWPVDWL  220 (271)
Q Consensus       205 l~~~i~~~~~~~v~iI  220 (271)
                      =.+.+++.+| +|.++
T Consensus       167 Gi~~v~~~~p-~v~I~  181 (210)
T COG0035         167 GIKAVEKAHP-DVEIY  181 (210)
T ss_pred             HHHHHHHHCC-CCEEE
T ss_conf             9999998689-97599


No 227
>pfam03618 DUF299 Domain of unknown function (DUF299). Family of bacterial proteins with no known function.
Probab=23.39  E-value=53  Score=13.71  Aligned_cols=104  Identities=13%  Similarity=0.096  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHH---HCCC
Q ss_conf             5899999999689998999941578989898989999999999999862169848997176202633899986---2577
Q gi|254780905|r   25 GLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIKDELRS---TFPS  101 (271)
Q Consensus        25 GLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~---~~~~  101 (271)
                      .-+|.+++.-++|+.++-    ..++|| -+|.+++.+...++-+    +.+   +|+ |--...-.-+.+++   .. +
T Consensus        12 ae~varAalaQF~~~~~~----~~~~p~-V~t~e~l~~il~~i~~----~~~---iV~-~TlVd~~lr~~l~~~c~~~-~   77 (255)
T pfam03618        12 AETVGRAALSQFPGVEFE----IHRFPF-IRTEEKLEEVLEEINE----EDG---IVF-YTLVDPELREILEEFAEAL-G   77 (255)
T ss_pred             HHHHHHHHHHHCCCCCEE----EEEECC-CCCHHHHHHHHHHHHH----CCC---EEE-EECCCHHHHHHHHHHHHHC-C
T ss_conf             999999999848999717----999589-4999999999999985----498---899-9628899999999999983-9


Q ss_pred             CCCCCCC-HHHHHHHHHCCCCCEEEEECHHHHCCHHHHHHHHH
Q ss_conf             7654454-79999998407883299850677317016899851
Q gi|254780905|r  102 MAFLGAV-PAIKQAAAYTQSGLISILSTPATLRRTYTSNLIHS  143 (271)
Q Consensus       102 ipiigii-~~~~~a~~~~~~~~VgiLAT~~Ti~s~~y~~~i~~  143 (271)
                      +|.+.+. |.+.........+....-|-.-.+...||+ .+++
T Consensus        78 i~~idll~~~i~~l~~~lg~~~~~~pG~~h~ld~~Yf~-RIeA  119 (255)
T pfam03618        78 IPCVDLLGPLLEPLESELGIKPSPEPGRQHGLDEDYFK-RIEA  119 (255)
T ss_pred             CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHH-HHHH
T ss_conf             97415779999999999787955454445776278999-9999


No 228
>CHL00095 clpC Clp protease ATP binding subunit
Probab=23.34  E-value=53  Score=13.70  Aligned_cols=76  Identities=14%  Similarity=0.216  Sum_probs=56.4

Q ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHCCC--------CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf             63488707987791058999999996899--------9899994157898989898999999999999986216984899
Q gi|254780905|r   10 KKLQNSILIFDSGIGGLIVLQKMRFLMPE--------YHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSV   81 (271)
Q Consensus        10 ~~~~~~IgifDSGiGGLtv~~~l~~~lP~--------~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IV   81 (271)
                      +.-++||-|=++|||=-+|+..|.++.-+        -.-||-=|....=-|.|-+-+..+|...+++.+- +.+ .. +
T Consensus       198 R~KNNpiLvGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~sLDl~~L~AGtkyRGeFEeRlk~il~ei~-~~~-~i-I  274 (823)
T CHL00095        198 RTKNNPILIGEPGVGKTAIAEGLAQRIANRDVPDILEDKLVLTLDIGLLLAGTKYRGEFEERIKKIMDEIK-KAN-NI-I  274 (823)
T ss_pred             HCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCCEEEEEHHHHHHCCCCCHHHHHHHHHHHHHHH-HCC-CE-E
T ss_conf             32488502379998799999999997608899868759936884288775334222679999999999998-579-86-9


Q ss_pred             EECCCCC
Q ss_conf             7176202
Q gi|254780905|r   82 IACNTAF   88 (271)
Q Consensus        82 IACNTas   88 (271)
                      +=+--.|
T Consensus       275 LFIDEiH  281 (823)
T CHL00095        275 LVIDEIH  281 (823)
T ss_pred             EEECCHH
T ss_conf             9973516


No 229
>PRK13151 consensus
Probab=23.18  E-value=53  Score=13.68  Aligned_cols=57  Identities=12%  Similarity=0.102  Sum_probs=31.1

Q ss_pred             CEEEEECCCCHH-HHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHH
Q ss_conf             707987791058-9999999968999899994157898989898999999999999986216984899717620263389
Q gi|254780905|r   15 SILIFDSGIGGL-IVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIKD   93 (271)
Q Consensus        15 ~IgifDSGiGGL-tv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~~   93 (271)
                      .|+|.|-|+|-+ ||.+++. ++ +.++....|.          +++            +  .++.+|++=--+-..+.+
T Consensus         2 kI~IiDyg~GNi~Sv~~al~-~l-g~~~~i~~~~----------~~i------------~--~~d~lIlPGVGsf~~~m~   55 (195)
T PRK13151          2 KIIIIDTACANLASLKFCLD-RL-GFNATISRDL----------KEL------------E--SADKLFLPGVGTAKEAMK   55 (195)
T ss_pred             EEEEEECCCHHHHHHHHHHH-HC-CCCEEEECCH----------HHH------------H--HCCEEEECCCCCHHHHHH
T ss_conf             89999479609999999999-85-9987996799----------999------------4--489699888899999999


Q ss_pred             HHHH
Q ss_conf             9986
Q gi|254780905|r   94 ELRS   97 (271)
Q Consensus        94 ~l~~   97 (271)
                      .|++
T Consensus        56 ~L~~   59 (195)
T PRK13151         56 NLEQ   59 (195)
T ss_pred             HHHH
T ss_conf             9987


No 230
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=23.13  E-value=53  Score=13.67  Aligned_cols=116  Identities=13%  Similarity=0.158  Sum_probs=61.1

Q ss_pred             HHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHH---HHCCCCCEEEEECCCCCHHHH---HHHHHHCC
Q ss_conf             999999996899989999415789898989899999999999998---621698489971762026338---99986257
Q gi|254780905|r   27 IVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDI---LDKYQPVLSVIACNTAFTLIK---DELRSTFP  100 (271)
Q Consensus        27 tv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~l---l~k~~~~~IVIACNTasa~~~---~~l~~~~~  100 (271)
                      .+.+.+.+.--...-.-+--.-|||+|+|.+.. ++..++++.+-   -.+.|+..|=+|---.  ...   +.-+++| 
T Consensus        58 ~l~~ai~etgv~ipSmClSaHRRfPfGS~D~~~-r~~aleiM~KaI~LA~dLGIRtIQLAGYDV--YYE~~d~eT~~rF-  133 (287)
T COG3623          58 ALVNAIQETGVRIPSMCLSAHRRFPFGSKDEAT-RQQALEIMEKAIQLAQDLGIRTIQLAGYDV--YYEEADEETRQRF-  133 (287)
T ss_pred             HHHHHHHHHCCCCCCHHHHHCCCCCCCCCCHHH-HHHHHHHHHHHHHHHHHHCCEEEEECCCEE--EECCCCHHHHHHH-
T ss_conf             999999980998663113310468899998789-999999999999999970842676324234--4146887899999-


Q ss_pred             CCCCCCCCHHHHHHHHHCCCCCEEEEECHH--HHC-CHHHHHHHHHCCCCCEEE
Q ss_conf             776544547999999840788329985067--731-701689985127885797
Q gi|254780905|r  101 SMAFLGAVPAIKQAAAYTQSGLISILSTPA--TLR-RTYTSNLIHSYVSQCHIH  151 (271)
Q Consensus       101 ~ipiigii~~~~~a~~~~~~~~VgiLAT~~--Ti~-s~~y~~~i~~~~~~~~v~  151 (271)
                         +-||.-++..|....-.--|-++-|+.  |+. -..|.+.|.  .|-..|+
T Consensus       134 ---i~g~~~a~~lA~~aqV~lAvEiMDtpfm~sIsk~~~~~~~I~--sP~f~vY  182 (287)
T COG3623         134 ---IEGLKWAVELAARAQVMLAVEIMDTPFMNSISKWLKYDKYIN--SPWFTVY  182 (287)
T ss_pred             ---HHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHHHC--CCCEEEC
T ss_conf             ---998999999998617288754216187889999999998737--9766844


No 231
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=23.13  E-value=53  Score=13.67  Aligned_cols=115  Identities=17%  Similarity=0.179  Sum_probs=65.1

Q ss_pred             CCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHH--HHHHHHHH--HHHHH---HHCCCCCEEEEECC
Q ss_conf             8870798779105899999999689998999941578989898989--99999999--99998---62169848997176
Q gi|254780905|r   13 QNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDH--ALKKRLMF--LFSDI---LDKYQPVLSVIACN   85 (271)
Q Consensus        13 ~~~IgifDSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~--~I~~~~~~--~~~~l---l~k~~~~~IVIACN   85 (271)
                      +..|.+|--|--|+.+++.|+..+-.++=||+-|+...-|-+++.-  .-..+...  ..+..   ..-.+++. .|+|-
T Consensus       199 d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~~~~~~~~~~~~~~adv-~iG~S  277 (432)
T COG0281         199 DQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRKGLLYDGREDLTMNQKKYAKAIEDTGERTLDLALAGADV-LIGVS  277 (432)
T ss_pred             CEEEEEECCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCE-EEECC
T ss_conf             03899967758899999999982898445899816763458864344214678877765145551121368988-99767


Q ss_pred             CCCHHHHHHHHHHCCCCCCC----CCCHHHHHHHHHCCCCCEEEEECH
Q ss_conf             20263389998625777654----454799999984078832998506
Q gi|254780905|r   86 TAFTLIKDELRSTFPSMAFL----GAVPAIKQAAAYTQSGLISILSTP  129 (271)
Q Consensus        86 Tasa~~~~~l~~~~~~ipii----gii~~~~~a~~~~~~~~VgiLAT~  129 (271)
                      ++-++-.+.+++--.+ |||    +-.|.+.+........--.++||-
T Consensus       278 ~~G~~t~e~V~~Ma~~-PiIfalaNP~pEi~Pe~a~~~~~~aaivaTG  324 (432)
T COG0281         278 GVGAFTEEMVKEMAKH-PIIFALANPTPEITPEDAKEWGDGAAIVATG  324 (432)
T ss_pred             CCCCCCHHHHHHHCCC-CEEEECCCCCCCCCHHHHHHCCCCCEEEEEC
T ss_conf             7887699999975649-8787548997326999996458897899828


No 232
>COG4844 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.01  E-value=54  Score=13.66  Aligned_cols=51  Identities=14%  Similarity=0.153  Sum_probs=33.9

Q ss_pred             HCCCCCEEEECC-CCHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHCC
Q ss_conf             105887899805-635889999998648997898285899999999986427
Q gi|254780905|r  188 EGKRTDVIVLAC-THYPLIVHVFRQLSPWPVDWLDNSDSIARRARCLLPRIN  238 (271)
Q Consensus       188 ~~~~~D~iILGC-THyPll~~~i~~~~~~~v~iIDpa~~va~~~~~~L~~~~  238 (271)
                      ++.+.|.+=.|| ||--.-...+-.+....+.-=++++.+...+...++++.
T Consensus        25 ~Dp~lDvlEYgCLt~Cg~Ca~~lfALVnGevV~Get~eeLv~NIY~~i~Enp   76 (78)
T COG4844          25 KDPNLDVLEYGCLTHCGICAASLFALVNGEVVEGETPEELVENIYTFIEENP   76 (78)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCCHHHHHHHHHHHHHCCC
T ss_conf             3999550223247664358776888716744328998999999999874067


No 233
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=22.94  E-value=54  Score=13.65  Aligned_cols=32  Identities=19%  Similarity=0.460  Sum_probs=14.6

Q ss_pred             CCEEEEECCC---CHHHHHHHHHHHCCCCCEEEEE
Q ss_conf             8707987791---0589999999968999899994
Q gi|254780905|r   14 NSILIFDSGI---GGLIVLQKMRFLMPEYHFIYVA   45 (271)
Q Consensus        14 ~~IgifDSGi---GGLtv~~~l~~~lP~~~~iY~~   45 (271)
                      +-+.++|=++   .|+.+++.+++..|+..++-+.
T Consensus        47 pdvvl~Dl~mP~~~G~e~~~~l~~~~p~~~vvvlt   81 (211)
T COG2197          47 PDVVLLDLSMPGMDGLEALKQLRARGPDIKVVVLT   81 (211)
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEE
T ss_conf             98899837889987599999999868997299996


No 234
>cd06367 PBP1_iGluR_NMDA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors.  While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. The function of the NMDA subtype receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer comprising two NR1 and two NR2 (A, B, C, and D) or NR3 (A and B) subunits
Probab=22.90  E-value=54  Score=13.65  Aligned_cols=46  Identities=13%  Similarity=-0.021  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHHHCCCCCEEEEECCCCC---HHHHHHHHHHCCCCCCCCCC
Q ss_conf             9999999999862169848997176202---63389998625777654454
Q gi|254780905|r   61 KKRLMFLFSDILDKYQPVLSVIACNTAF---TLIKDELRSTFPSMAFLGAV  108 (271)
Q Consensus        61 ~~~~~~~~~~ll~k~~~~~IVIACNTas---a~~~~~l~~~~~~ipiigii  108 (271)
                      ......+|+.+.. ..+..||..=++-+   ++.++.+-+.+ .+|+||+.
T Consensus        49 ~~~~~~vc~~l~~-~~v~~iv~~~~~~~~~~a~~ls~~s~~~-~vPvis~~   97 (362)
T cd06367          49 ISLLLSVCDLLVV-QVVAGVVFSDPTDEEAVAQILDFTSAQT-RIPVVGIS   97 (362)
T ss_pred             HHHHHHHHHHHHH-CEEEEEEECCCCCCCCHHHHHHHHHCCC-CCCEEEEE
T ss_conf             9999999998744-8379999558997531446888874157-78889845


No 235
>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=22.83  E-value=54  Score=13.64  Aligned_cols=21  Identities=24%  Similarity=0.332  Sum_probs=15.9

Q ss_pred             EEEEECCCCHH-HHHHHHHHHCC
Q ss_conf             07987791058-99999999689
Q gi|254780905|r   16 ILIFDSGIGGL-IVLQKMRFLMP   37 (271)
Q Consensus        16 IgifDSGiGGL-tv~~~l~~~lP   37 (271)
                      |||.|-|+|=+ ||.++++ ++-
T Consensus         2 I~IiDyg~gNi~Sv~~al~-~lg   23 (201)
T PRK13152          2 IALIDYKAGNLNSVAKAFE-KIG   23 (201)
T ss_pred             EEEEECCCCHHHHHHHHHH-HCC
T ss_conf             9999559427999999999-869


No 236
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily; InterPro: IPR006378   This family of sequences includes both the members of the sucrose-phosphate phosphatase (SPP) family, encompassing plants and cyanobacteria, as well as those archaeal sequences which are the closest relatives. It remains to be shown whether these archaeal sequences catalyze the same reaction as SPP. .
Probab=22.58  E-value=55  Score=13.60  Aligned_cols=35  Identities=9%  Similarity=0.069  Sum_probs=13.8

Q ss_pred             HHHHHHHHHHHHHHCCCCC---EEEEECCCCCHHHHHHHHH
Q ss_conf             9999999999986216984---8997176202633899986
Q gi|254780905|r   60 LKKRLMFLFSDILDKYQPV---LSVIACNTAFTLIKDELRS   97 (271)
Q Consensus        60 I~~~~~~~~~~ll~k~~~~---~IVIACNTasa~~~~~l~~   97 (271)
                      +..+..+...+. ++.+|.   ++++.=|+.  .+.+.|+.
T Consensus        16 ~~~~~~~~~~~~-e~~~Ce~~~~~l~TGr~~--~~~~~l~~   53 (247)
T TIGR01482        16 LNLRAIEAIRKA-ESVYCEKIPVVLVTGRSV--KFARALAK   53 (247)
T ss_pred             HHHHHHHHHHHH-HCCCCCEEEEEEEECCHH--HHHHHHHH
T ss_conf             455389988875-103665157999738818--99999985


No 237
>TIGR00589 ogt methylated-DNA-[protein]-cysteine S-methyltransferase; InterPro: IPR014048   Synonym(s): 6-O-methylguanine-DNA methyltransferase, O-6-methylguanine-DNA-alkyltransferase   This entry represents the DNA binding region of 6-O-methylguanine-DNA methyltransferases.   The repair of DNA containing O6-alkylated guanine is carried out by DNA-[protein]-cysteine S-methyltransferase (2.1.1.63 from EC). The major mutagenic and carcinogenic effect of methylating agents in DNA is the formation of O6-alkylguanine. The alkyl group at the O-6 position is transferred to a cysteine residue in the enzyme . This is a suicide reaction since the enzyme is irreversibly inactivated and the methylated protein accumulates as a dead-end product. Most, but not all of the methyltransferases are also able to repair O-4-methylthymine. DNA-[protein]-cysteine S-methyltransferases are widely distributed and are found in various prokaryotic and eukaryotic sources .; GO: 0003824 catalytic activity, 0006281 DNA repair.
Probab=22.53  E-value=55  Score=13.60  Aligned_cols=38  Identities=21%  Similarity=0.444  Sum_probs=24.5

Q ss_pred             CCCCCCC-CCHHHHHHHH-----HHHHHHHHHCCCCCEEEEECCC
Q ss_conf             7898989-8989999999-----9999998621698489971762
Q gi|254780905|r   48 VGFPYGN-WEDHALKKRL-----MFLFSDILDKYQPVLSVIACNT   86 (271)
Q Consensus        48 ~~~PYG~-ks~~~I~~~~-----~~~~~~ll~k~~~~~IVIACNT   86 (271)
                      .++|||+ +|=.||-++.     -..+..-+.+ ++=.|+|+|.=
T Consensus        12 ~~Ip~G~t~sY~~lA~~iG~P~A~RAVG~A~~~-Np~~I~vPCHR   55 (80)
T TIGR00589        12 RTIPYGETKSYGELAKRIGNPKAVRAVGGANGR-NPLAIIVPCHR   55 (80)
T ss_pred             CCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHC-CCCCEEECCEE
T ss_conf             337887632689999971889871279887405-99976507802


No 238
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=22.51  E-value=55  Score=13.59  Aligned_cols=90  Identities=16%  Similarity=0.183  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHHHHHCCCCCEEEECCCCHH--HHHHHH---HHHCCCCCEEE----ECHHH--HHH--HHHH-HHHHCCC
Q ss_conf             999999999846541058878998056358--899999---98648997898----28589--999--9999-9864273
Q gi|254780905|r  174 DEIKKEIEGCFIEKEGKRTDVIVLACTHYP--LIVHVF---RQLSPWPVDWL----DNSDS--IAR--RARC-LLPRINT  239 (271)
Q Consensus       174 ~~~~~~l~~~l~~~~~~~~D~iILGCTHyP--ll~~~i---~~~~~~~v~iI----Dpa~~--va~--~~~~-~L~~~~~  239 (271)
                      .-+...++..+..-.... =.++.|+..--  ++.+.+   .+..+ +++++    ++...  ..+  .+.+ +++... 
T Consensus       217 aPi~Sml~~~~~~~~~~~-i~L~~G~R~~~dly~~e~l~~l~~~~~-~~~~~~vls~~~~~~w~G~~G~v~~~v~~~~~-  293 (337)
T PRK07609        217 APIKSIVEHLRAKGIQRP-VHLYWGVRRPKDLYLSALAEQWAEELP-NFRYVPVVSDPDAEDWTGRTGFVHQAVLEDFP-  293 (337)
T ss_pred             HHHHHHHHHHHHCCCCCC-EEEEEECCCHHHHHHHHHHHHHHHHCC-CCEEEEEECCCCCCCCCCCCCCHHHHHHHHCC-
T ss_conf             789999999997399981-899983598798643999999986489-84899997778877767760538899996579-


Q ss_pred             CCCCCCCCEEEEECCCHHH--HHHHHHHHCCCC
Q ss_conf             3457788779996699799--999999856888
Q gi|254780905|r  240 HQTRVFDDHALFLSGKPDI--AMRRLMQGFGLK  270 (271)
Q Consensus       240 ~~~~~~~~~~f~~T~~~~~--~~~~~~~~~G~~  270 (271)
                          ......||+-|-|..  ..+....-.|+.
T Consensus       294 ----~~~~~~vYlCGPp~Mv~a~~~~L~~~Gv~  322 (337)
T PRK07609        294 ----DLSGHQVYACGSPVMVYAARDDFVAAGLP  322 (337)
T ss_pred             ----CCCCCEEEEECCHHHHHHHHHHHHHCCCC
T ss_conf             ----96688999979999999999999985998


No 239
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=22.43  E-value=55  Score=13.58  Aligned_cols=78  Identities=10%  Similarity=-0.004  Sum_probs=42.5

Q ss_pred             EECCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEECHHHHCCHHHHHHHHHCCCCCEEEECCCCCHHHH
Q ss_conf             71762026338999862577765445479999998407883299850677317016899851278857977056422578
Q gi|254780905|r   82 IACNTAFTLIKDELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSSMILASR  161 (271)
Q Consensus        82 IACNTasa~~~~~l~~~~~~ipiigii~~~~~a~~~~~~~~VgiLAT~~Ti~s~~y~~~i~~~~~~~~v~~~~~~~lv~~  161 (271)
                      =||||.. .--..+. -+ +-+..|.+.+++......+.+++.+||+-|+-++-.|.-.-. ....+.|....-.....+
T Consensus        92 gAvNTi~-~~~g~l~-G~-NTD~~G~~~~l~~~~~~~~~~~vlilGaGGaa~ai~~al~~~-g~~~i~I~nR~~~r~~~l  167 (284)
T PRK12549         92 GAVNTVV-FRDGRRI-GH-NTDWSGFAEGFRRGLPDASLERVVQLGAGGAGAAVAHALLTL-GVERLTLFDVDPARAQAL  167 (284)
T ss_pred             CCEEEEE-EECCEEE-EE-ECCHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHC-CCCEEEEEECCHHHHHHH
T ss_conf             6521489-7599899-98-066688999999746453557189965661689999999976-999899997988999999


Q ss_pred             HH
Q ss_conf             77
Q gi|254780905|r  162 VE  163 (271)
Q Consensus       162 iE  163 (271)
                      ++
T Consensus       168 ~~  169 (284)
T PRK12549        168 AD  169 (284)
T ss_pred             HH
T ss_conf             99


No 240
>PRK08195 4-hydroxy-2-ketovalerate aldolase; Validated
Probab=22.42  E-value=55  Score=13.58  Aligned_cols=10  Identities=30%  Similarity=0.474  Sum_probs=5.3

Q ss_pred             CCEEEEECCC
Q ss_conf             8707987791
Q gi|254780905|r   14 NSILIFDSGI   23 (271)
Q Consensus        14 ~~IgifDSGi   23 (271)
                      +.|-|+|+.+
T Consensus         2 kkI~I~D~TL   11 (337)
T PRK08195          2 KKIYIHDVTL   11 (337)
T ss_pred             CEEEEEECCC
T ss_conf             8489997997


No 241
>pfam10977 DUF2797 Protein of unknown function (DUF2797). This family of proteins has no known function.
Probab=22.40  E-value=18  Score=16.79  Aligned_cols=16  Identities=38%  Similarity=0.187  Sum_probs=7.3

Q ss_pred             EEEECCCCCHHHHHHH
Q ss_conf             7977056422578776
Q gi|254780905|r  149 HIHLVSSMILASRVEE  164 (271)
Q Consensus       149 ~v~~~~~~~lv~~iE~  164 (271)
                      .+...+...++.++|.
T Consensus       105 ~i~~v~nR~~AG~~Ev  120 (233)
T pfam10977       105 PILRVPNRRLAGIVEV  120 (233)
T ss_pred             EEEECCCCCHHHHHHH
T ss_conf             9998578600558899


No 242
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=22.23  E-value=56  Score=13.56  Aligned_cols=40  Identities=13%  Similarity=0.125  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHCCCCCEEEEECCCCCHHH--HHHHHHHCCCCCCCC
Q ss_conf             9999999862169848997176202633--899986257776544
Q gi|254780905|r   64 LMFLFSDILDKYQPVLSVIACNTAFTLI--KDELRSTFPSMAFLG  106 (271)
Q Consensus        64 ~~~~~~~ll~k~~~~~IVIACNTasa~~--~~~l~~~~~~ipiig  106 (271)
                      -.+.++.++.+ ++|.|+++++..++..  ++..++  .+||++.
T Consensus        44 Q~~~i~~lia~-~vD~Iii~p~d~~a~~~~l~~a~~--agIPVV~   85 (288)
T cd01538          44 QISQIENMIAK-GVDVLVIAPVDGEALASAVEKAAD--AGIPVIA   85 (288)
T ss_pred             HHHHHHHHHHC-CCCEEEECCCCHHHHHHHHHHHHH--CCCEEEE
T ss_conf             99999999984-998999867753443999999997--5999999


No 243
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=22.13  E-value=56  Score=13.54  Aligned_cols=60  Identities=15%  Similarity=0.232  Sum_probs=40.2

Q ss_pred             CCEEEEECCCCHHHHHH---HHH----HHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf             87079877910589999---999----968999899994157898989898999999999999986216
Q gi|254780905|r   14 NSILIFDSGIGGLIVLQ---KMR----FLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKY   75 (271)
Q Consensus        14 ~~IgifDSGiGGLtv~~---~l~----~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~   75 (271)
                      .+..|.--|+||-|.-.   .+.    ..-|+.=+++.|.+.  -...++.+++.+...++++.+.++.
T Consensus        21 ~~~~viN~Gi~G~tt~~~l~r~~~~v~~~~P~~Vvi~~G~ND--l~~~~~~~~i~~~~~~ii~~i~~~~   87 (171)
T cd04502          21 APLPVVNRGFGGSTLADCLHYFDRLVLPYQPRRVVLYAGDND--LASGRTPEEVLRDFRELVNRIRAKL   87 (171)
T ss_pred             CCCCEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCC--CCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf             898768636374207889999861012679988999971254--0249899999999999999999988


No 244
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=22.00  E-value=56  Score=13.53  Aligned_cols=41  Identities=7%  Similarity=-0.021  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHCCCCCEEEEECCCCCHHH--HHHHHHHCCCCCCCCC
Q ss_conf             9999999862169848997176202633--8999862577765445
Q gi|254780905|r   64 LMFLFSDILDKYQPVLSVIACNTAFTLI--KDELRSTFPSMAFLGA  107 (271)
Q Consensus        64 ~~~~~~~ll~k~~~~~IVIACNTasa~~--~~~l~~~~~~ipiigi  107 (271)
                      -.+.++.++.+ ++|.||++.+..++..  ++.+++  .+||++.+
T Consensus        44 Q~~~i~~~i~~-~vDgIii~p~d~~~~~~~l~~a~~--aGIPVV~~   86 (273)
T cd06305          44 QADQIDQAIAQ-KVDAIIIQHGRAEVLKPWVKRALD--AGIPVVAF   86 (273)
T ss_pred             HHHHHHHHHHC-CCCEEEEECCCHHHHHHHHHHHHH--CCCCEEEE
T ss_conf             99999999985-999999946871444899999998--59978998


No 245
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=21.97  E-value=56  Score=13.52  Aligned_cols=118  Identities=14%  Similarity=0.042  Sum_probs=61.3

Q ss_pred             EECCCCHHHHHHHHHHHCCCCCEEEEECC---CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHH-H--
Q ss_conf             87791058999999996899989999415---78989898989999999999999862169848997176202633-8--
Q gi|254780905|r   19 FDSGIGGLIVLQKMRFLMPEYHFIYVADD---VGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLI-K--   92 (271)
Q Consensus        19 fDSGiGGLtv~~~l~~~lP~~~~iY~~D~---~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~-~--   92 (271)
                      +.+--|.+.-++.....-  +|-||+|-+   +|.+..+-|.++    ..+.+++ .++.|.+. .+++||+.... +  
T Consensus         9 ll~pag~l~~l~~ai~~G--ADaVY~G~~~~~~R~~a~nfs~~~----l~e~i~~-ah~~gkk~-~V~~N~~~~~~~~~~   80 (347)
T COG0826           9 LLAPAGNLEDLKAAIAAG--ADAVYIGEKEFGLRRRALNFSVED----LAEAVEL-AHSAGKKV-YVAVNTLLHNDELET   80 (347)
T ss_pred             EECCCCCHHHHHHHHHCC--CCEEEECCCCCCCCCCCCCCCHHH----HHHHHHH-HHHCCCEE-EEEECCCCCCCHHHH
T ss_conf             665888889999999769--998995775011546533489899----9999999-99869949-999655416410568


Q ss_pred             --HHHHHHCCCCCCCCCC---HHHHHHHHHCCCCCEEEEECHHHHCCHHHHHHHHHCC
Q ss_conf             --9998625777654454---7999999840788329985067731701689985127
Q gi|254780905|r   93 --DELRSTFPSMAFLGAV---PAIKQAAAYTQSGLISILSTPATLRRTYTSNLIHSYV  145 (271)
Q Consensus        93 --~~l~~~~~~ipiigii---~~~~~a~~~~~~~~VgiLAT~~Ti~s~~y~~~i~~~~  145 (271)
                        +.++.-. ++-+-++|   |++...+......-=-.+.|++++.+..--+...+.+
T Consensus        81 ~~~~l~~l~-e~GvDaviv~Dpg~i~l~~e~~p~l~ih~S~q~~v~N~~~~~f~~~~G  137 (347)
T COG0826          81 LERYLDRLV-ELGVDAVIVADPGLIMLARERGPDLPIHVSTQANVTNAETAKFWKELG  137 (347)
T ss_pred             HHHHHHHHH-HCCCCEEEECCHHHHHHHHHHCCCCCEEEEEEEECCCHHHHHHHHHCC
T ss_conf             999999999-759878997188999999975899868996567217899999999769


No 246
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=21.96  E-value=38  Score=14.65  Aligned_cols=33  Identities=18%  Similarity=0.309  Sum_probs=17.7

Q ss_pred             HHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHH
Q ss_conf             9999968999899994157898989898999999999
Q gi|254780905|r   30 QKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMF   66 (271)
Q Consensus        30 ~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~   66 (271)
                      .++..+.| .-++=| |.+ +|||+|-.+. .+++.+
T Consensus        12 dKvi~~f~-~~lVKF-D~a-yPYGeKhdaF-~~~a~~   44 (116)
T cd03007          12 YKVIPKFK-YSLVKF-DTA-YPYGEKHEAF-TRLAES   44 (116)
T ss_pred             HHHHCCCC-EEEEEE-ECC-CCCCCHHHHH-HHHHHH
T ss_conf             55011376-179997-134-7776227999-999999


No 247
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=21.96  E-value=56  Score=13.52  Aligned_cols=66  Identities=12%  Similarity=0.092  Sum_probs=43.9

Q ss_pred             CCEEEEECCCC-HH-HHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf             87079877910-58-999999996899989999415789898989899999999999998621698489971762
Q gi|254780905|r   14 NSILIFDSGIG-GL-IVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNT   86 (271)
Q Consensus        14 ~~IgifDSGiG-GL-tv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNT   86 (271)
                      ..|||.-|-=| ++ -+++.+.++.|..+++++  .+.+ =|+....+|.+ ..+.++   ....+|+|||+=-=
T Consensus       136 ~~IgvITS~tgAa~~Di~~~~~~R~p~~~i~l~--p~~V-QG~~A~~~I~~-ai~~~~---~~~~~DvIIi~RGG  203 (443)
T PRK00286        136 KRIGVITSPTGAAIRDILTVLSRRFPSVEVIIY--PTLV-QGEGAAASIVE-AIERAN---ARGEVDVLIVARGG  203 (443)
T ss_pred             CEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEE--ECCC-CHHHHHHHHHH-HHHHHH---HHCCCCEEEEECCC
T ss_conf             579998368438999999998504996599998--1456-26547999999-999985---22488889993687


No 248
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers
Probab=21.93  E-value=56  Score=13.52  Aligned_cols=36  Identities=19%  Similarity=0.092  Sum_probs=17.9

Q ss_pred             HHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf             999999986216984899717620263389998625777
Q gi|254780905|r   64 LMFLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSM  102 (271)
Q Consensus        64 ~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~~~~~i  102 (271)
                      ..+.+..++++.|... ..|.| .. .+++.+++.-+++
T Consensus         9 ~~~~l~~~L~~~g~~v-~~a~~-g~-~al~~~~~~~~dl   44 (113)
T cd00156           9 IRELLRRLLEKEGYEV-VEAED-GE-EALALLAEEKPDL   44 (113)
T ss_pred             HHHHHHHHHHHCCCEE-EEECC-HH-HHHHHHHHCCCCE
T ss_conf             9999999999889999-99899-99-9999987579999


No 249
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=21.93  E-value=56  Score=13.52  Aligned_cols=30  Identities=23%  Similarity=0.376  Sum_probs=24.7

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf             707987791058999999996899989999
Q gi|254780905|r   15 SILIFDSGIGGLIVLQKMRFLMPEYHFIYV   44 (271)
Q Consensus        15 ~IgifDSGiGGLtv~~~l~~~lP~~~~iY~   44 (271)
                      .|.|.-+|+-|||-.-.|++..|+.++.-|
T Consensus         2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lf   31 (444)
T COG1232           2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLF   31 (444)
T ss_pred             EEEEECCCHHHHHHHHHHHHHCCCCCEEEE
T ss_conf             399987828889999999985899867998


No 250
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=21.91  E-value=56  Score=13.52  Aligned_cols=22  Identities=14%  Similarity=0.036  Sum_probs=14.2

Q ss_pred             CEEEEECCCCHHHHHHHHHHHC
Q ss_conf             7079877910589999999968
Q gi|254780905|r   15 SILIFDSGIGGLIVLQKMRFLM   36 (271)
Q Consensus        15 ~IgifDSGiGGLtv~~~l~~~l   36 (271)
                      .||+.==|.=|..+.+.|.+.-
T Consensus         3 kIgfIGlG~MG~~ma~~L~~~G   24 (295)
T PRK11559          3 KVGFIGLGIMGKPMSKNLLKAG   24 (295)
T ss_pred             EEEEECCHHHHHHHHHHHHHCC
T ss_conf             8999840576999999999789


No 251
>pfam07912 ERp29_N ERp29, N-terminal domain. ERp29 is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organized into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI). However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that ERp29's function is similar to the chaperone function of PDI. The N-terminal domain is exclusively responsible for the homodimerization of the protein, without covalent linkages or additional contacts with other domains.
Probab=21.86  E-value=38  Score=14.63  Aligned_cols=34  Identities=18%  Similarity=0.314  Sum_probs=18.5

Q ss_pred             HHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHH
Q ss_conf             99999968999899994157898989898999999999
Q gi|254780905|r   29 LQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMF   66 (271)
Q Consensus        29 ~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~   66 (271)
                      +.++..+.| .-++=| |.+ +|||+|-.+. .+++.+
T Consensus        14 FdKvv~~f~-~~lVKF-Dva-yPYGeKHdaF-~~~A~e   47 (126)
T pfam07912        14 FYKVIPKFK-YSLVKF-DTA-YPYGEKHEAF-TRLAKE   47 (126)
T ss_pred             HHHHHCCCC-EEEEEE-ECC-CCCCCHHHHH-HHHHHH
T ss_conf             555121376-179997-234-7776227999-999998


No 252
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=21.83  E-value=57  Score=13.51  Aligned_cols=63  Identities=11%  Similarity=0.015  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCC-------CCCHHHHHHHHHCCCCCEEEEECH
Q ss_conf             999999986216984899717620263389998625777654-------454799999984078832998506
Q gi|254780905|r   64 LMFLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFL-------GAVPAIKQAAAYTQSGLISILSTP  129 (271)
Q Consensus        64 ~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~~~~~ipii-------gii~~~~~a~~~~~~~~VgiLAT~  129 (271)
                      +.+.+..+++..+-  .|.+..++. .+++.+++.-|++=++       +-++.++........-+|.+|...
T Consensus        15 vr~gl~~lL~~~~~--~v~~~~~~~-~~l~~~~~~~pdlvllDi~mP~~~G~e~l~~l~~~~p~~~vivlT~~   84 (202)
T PRK09390         15 MRDSLAFLLDSAGF--EVRLFESAQ-AFLDALPGLRFGCVVTDVRMPGIDGIELLRRLKARGSPLPVIVMTGH   84 (202)
T ss_pred             HHHHHHHHHHHCCC--EEEEECCHH-HHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCEEEEEEC
T ss_conf             99999999998899--899989999-99999765797999877999998960799998722899867999745


No 253
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=21.71  E-value=57  Score=13.49  Aligned_cols=67  Identities=13%  Similarity=0.140  Sum_probs=37.0

Q ss_pred             CCEEEE-ECCCCHHHHHHHHHHHCC--CCCE-EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCH
Q ss_conf             870798-779105899999999689--9989-999415789898989899999999999998621698489971762026
Q gi|254780905|r   14 NSILIF-DSGIGGLIVLQKMRFLMP--EYHF-IYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFT   89 (271)
Q Consensus        14 ~~Igif-DSGiGGLtv~~~l~~~lP--~~~~-iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa   89 (271)
                      ..+||| |||+|=-+++.++.+...  +..+ ||.      --|+|++|- .++..    .+.+...-+--|+-++|++.
T Consensus       139 qr~gIfggaGvGKT~Ll~e~i~n~~~~~~~v~V~~------~IGER~rE~-~e~~~----el~~~g~l~~tv~V~a~~de  207 (449)
T TIGR03305       139 GKAGLFGGAGVGKTVLLTEMIHNMVGQHQGVSIFC------GIGERCREG-EELYR----EMKEAGVLDNTVMVFGQMNE  207 (449)
T ss_pred             CEEEEECCCCCCCCCHHHHHHHHHHHHCCCEEEEE------EEEEEHHHH-HHHHH----HHHHCCCCCEEEEEEECCCC
T ss_conf             56566527999841018999986564148868999------974521679-99999----98753665426999836989


Q ss_pred             HH
Q ss_conf             33
Q gi|254780905|r   90 LI   91 (271)
Q Consensus        90 ~~   91 (271)
                      -+
T Consensus       208 pp  209 (449)
T TIGR03305       208 PP  209 (449)
T ss_pred             CH
T ss_conf             87


No 254
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain.  DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=21.57  E-value=29  Score=15.41  Aligned_cols=24  Identities=17%  Similarity=-0.013  Sum_probs=15.7

Q ss_pred             HHHHHCCCCCEEEECCCCHHHHHH
Q ss_conf             465410588789980563588999
Q gi|254780905|r  184 FIEKEGKRTDVIVLACTHYPLIVH  207 (271)
Q Consensus       184 l~~~~~~~~D~iILGCTHyPll~~  207 (271)
                      .....+.++|.+++.=|-+....+
T Consensus       182 a~~~~~~ga~gv~~~Nt~~~~~~~  205 (289)
T cd02810         182 AKAAERAGADGLTAINTISGRVVD  205 (289)
T ss_pred             HHHHHHCCCCEEEEECCCCCCCCC
T ss_conf             999997599689996787765554


No 255
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=21.52  E-value=57  Score=13.47  Aligned_cols=141  Identities=12%  Similarity=0.084  Sum_probs=78.8

Q ss_pred             CEEEEECHHHHCCHH---HHHHHHHCCCCCEEEECCCCCHH----HHHHHHHHCCCCCHHH-HHHHHHHHHHHHHCCCCC
Q ss_conf             329985067731701---68998512788579770564225----7877664267769799-999999984654105887
Q gi|254780905|r  122 LISILSTPATLRRTY---TSNLIHSYVSQCHIHLVSSMILA----SRVEEYACGIKIKEDE-IKKEIEGCFIEKEGKRTD  193 (271)
Q Consensus       122 ~VgiLAT~~Ti~s~~---y~~~i~~~~~~~~v~~~~~~~lv----~~iE~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~D  193 (271)
                      .||+-|++++-||..   .+.++.+......|..++...+-    .+-+++.-..+...+- -...+...+..++.    
T Consensus        84 IIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGFhy~n~~L~~~glm~rKGfPeSyD~~~ll~fl~~vK~----  159 (283)
T COG1072          84 IIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGFHYPNAVLDERGLMARKGFPESYDVAALLRFLSDVKA----  159 (283)
T ss_pred             EEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHC----
T ss_conf             9996057665577899999999963889873378714545467677522122001899853568999999999965----


Q ss_pred             EEEECCC--CHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHCCCC-CCCCCCCEEEEECCCHHHH-HHHHHHHCCC
Q ss_conf             8998056--3588999999864899789828589999999998642733-4577887799966997999-9999985688
Q gi|254780905|r  194 VIVLACT--HYPLIVHVFRQLSPWPVDWLDNSDSIARRARCLLPRINTH-QTRVFDDHALFLSGKPDIA-MRRLMQGFGL  269 (271)
Q Consensus       194 ~iILGCT--HyPll~~~i~~~~~~~v~iIDpa~~va~~~~~~L~~~~~~-~~~~~~~~~f~~T~~~~~~-~~~~~~~~G~  269 (271)
                          ||+  --|...+.+.+..|+...++++.+.+.-+--.+|.....+ --..+-.-.+|+-.+.+.- .+-+.+|+++
T Consensus       160 ----~~~~v~aPvysh~~yD~vp~~~~v~~~pdIlI~EG~nvLq~~~p~~~~sdffDfSIyvDa~~~~le~wyi~Rfl~~  235 (283)
T COG1072         160 ----GKPDVFAPVYSHLIYDPVPDAFQVVPQPDILIVEGNNVLQDGEPWLFLSDFFDFSIYVDADEELLEERYIERFLKF  235 (283)
T ss_pred             ----CCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEECHHHHCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHH
T ss_conf             ----9985124323311025678850205899889991526625898511125622179993699999999999999850


Q ss_pred             C
Q ss_conf             8
Q gi|254780905|r  270 K  270 (271)
Q Consensus       270 ~  270 (271)
                      +
T Consensus       236 g  236 (283)
T COG1072         236 G  236 (283)
T ss_pred             C
T ss_conf             4


No 256
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=21.47  E-value=58  Score=13.46  Aligned_cols=189  Identities=13%  Similarity=0.099  Sum_probs=85.9

Q ss_pred             HHHHHHHHCC--CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC--HHHHHHHHHHCCCCC
Q ss_conf             9999999689--998999941578989898989999999999999862169848997176202--633899986257776
Q gi|254780905|r   28 VLQKMRFLMP--EYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAF--TLIKDELRSTFPSMA  103 (271)
Q Consensus        28 v~~~l~~~lP--~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTas--a~~~~~l~~~~~~ip  103 (271)
                      +.+.+.+..-  +.+++ +.|+.+      +.    +.-.+.++.++++ ++|.|+++....+  ...++.+++  .++|
T Consensus        17 v~~gie~~a~~~G~~~~-i~~s~~------d~----~~q~~~i~~li~~-~vDgiIi~p~~~~~~~~~~~~~~~--~gIP   82 (267)
T cd06322          17 LANAMKEEAKKQKVNLI-VSIANQ------DL----NKQLSDVEDFITK-KVDAIVLSPVDSKGIRAAIAKAKK--AGIP   82 (267)
T ss_pred             HHHHHHHHHHHCCCEEE-EECCCC------CH----HHHHHHHHHHHHC-CCCEEEEECCCCCHHHHHHHHHHH--CCCC
T ss_conf             99999999997499999-983999------99----9999999999974-999999906761010699999997--5997


Q ss_pred             CCCCC--------------H---HHHHH----HHH-CCCCCEEEEECHHH---H-CCHHHHHHHHHCCCCCEEEEC-CCC
Q ss_conf             54454--------------7---99999----984-07883299850677---3-170168998512788579770-564
Q gi|254780905|r  104 FLGAV--------------P---AIKQA----AAY-TQSGLISILSTPAT---L-RRTYTSNLIHSYVSQCHIHLV-SSM  156 (271)
Q Consensus       104 iigii--------------~---~~~~a----~~~-~~~~~VgiLAT~~T---i-~s~~y~~~i~~~~~~~~v~~~-~~~  156 (271)
                      ++.+-              +   +.+.+    +.. ...++|++++.+..   . +..-|++.+.++ ++.++... .+.
T Consensus        83 vV~~d~~~~~~~~~~~V~~Dn~~~g~~a~~~l~~~l~g~~~i~~i~~~~~~~~~~R~~Gf~~al~~~-~~~~~~~~~~~~  161 (267)
T cd06322          83 VITVDIAAEGVAVVSHVATDNYAGGVLAGELAAKVLNGKGQVAIIDYPTVQSVVDRVRGFKEALADY-PNIKIVAVQPGI  161 (267)
T ss_pred             EEEEECCCCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHC-CCCEEEEEECCC
T ss_conf             8998346555664329962628999999999999733894599991799736999999999999977-994699983578


Q ss_pred             CHH---HHHHHHHHCCC-------CCHHHHHHHHHHHHHHHHCCCC-CEEEECCCCHHHHHHHHHHHCCCCCE-EEECHH
Q ss_conf             225---78776642677-------6979999999998465410588-78998056358899999986489978-982858
Q gi|254780905|r  157 ILA---SRVEEYACGIK-------IKEDEIKKEIEGCFIEKEGKRT-DVIVLACTHYPLIVHVFRQLSPWPVD-WLDNSD  224 (271)
Q Consensus       157 ~lv---~~iE~~~~~~~-------~~~~~~~~~l~~~l~~~~~~~~-D~iILGCTHyPll~~~i~~~~~~~v~-iIDpa~  224 (271)
                      ...   ...++.....+       ..+......+    ..++..+. |..|.|+--.|.....++. .++... +--|..
T Consensus       162 ~~~~~~~~~~~~L~~~p~~~aI~~~nD~~A~Ga~----~al~~~g~~di~vvGfD~~~~a~~~i~~-~~p~~ttv~Q~~~  236 (267)
T cd06322         162 TRAEALTAAQNILQANPDLDGIFAFGDDAALGAV----SAIKAAGRDNVKVIGFDGMPEARKAVDG-EPPFVAVIRQYPD  236 (267)
T ss_pred             CHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHH----HHHHHCCCCCCEEEEECCCHHHHHHHHH-CCCCEEEEECCHH
T ss_conf             8799999999998628777489981879999999----9999759999889999494999999970-8987899968999


Q ss_pred             HHHHHHHHHHHH
Q ss_conf             999999999864
Q gi|254780905|r  225 SIARRARCLLPR  236 (271)
Q Consensus       225 ~va~~~~~~L~~  236 (271)
                      .+.+...+.|-+
T Consensus       237 ~~G~~av~~l~~  248 (267)
T cd06322         237 QMGKKAIDAAAD  248 (267)
T ss_pred             HHHHHHHHHHHH
T ss_conf             999999999999


No 257
>TIGR03307 PhnP phosphonate metabolism protein PhnP. This family of proteins found in operons encoding phosphonate C-P lyase systems as is observed in E. coli and is a member of the metallo-beta-lactamase superfamily (pfam00753). As defined by this model, all instances of this protein are associated with the C-P lyase, but not all genomes containing the C-P lyase system contain phnP.
Probab=21.44  E-value=58  Score=13.45  Aligned_cols=16  Identities=25%  Similarity=0.623  Sum_probs=12.4

Q ss_pred             HHCCCCCEEEECCCCH
Q ss_conf             4105887899805635
Q gi|254780905|r  187 KEGKRTDVIVLACTHY  202 (271)
Q Consensus       187 ~~~~~~D~iILGCTHy  202 (271)
                      ++..++|.+|+.|||.
T Consensus       174 L~~~~lD~li~d~~~~  189 (249)
T TIGR03307       174 LKNHPLDLLILDCSHP  189 (249)
T ss_pred             HCCCCCCEEEECCCCC
T ss_conf             7289988899627877


No 258
>pfam09439 SRPRB Signal recognition particle receptor beta subunit. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase which anchors the alpha subunit to the endoplasmic reticulum membrane.
Probab=21.36  E-value=58  Score=13.44  Aligned_cols=10  Identities=10%  Similarity=0.487  Sum_probs=4.5

Q ss_pred             CCEEEEECHH
Q ss_conf             8329985067
Q gi|254780905|r  121 GLISILSTPA  130 (271)
Q Consensus       121 ~~VgiLAT~~  130 (271)
                      +.+-++=+||
T Consensus        49 ~~~~lvD~PG   58 (181)
T pfam09439        49 NSLTLIDFPG   58 (181)
T ss_pred             CEEEEEECCC
T ss_conf             6689998899


No 259
>KOG2420 consensus
Probab=21.28  E-value=32  Score=15.13  Aligned_cols=12  Identities=25%  Similarity=0.050  Sum_probs=5.7

Q ss_pred             CHHHHHHHHHHH
Q ss_conf             058999999996
Q gi|254780905|r   24 GGLIVLQKMRFL   35 (271)
Q Consensus        24 GGLtv~~~l~~~   35 (271)
                      +|++.+..+++.
T Consensus        48 ~~~~~~~~~~~~   59 (382)
T KOG2420          48 WGAAGLAYLRRQ   59 (382)
T ss_pred             CCHHHHHHHHCC
T ss_conf             521342233216


No 260
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=21.28  E-value=58  Score=13.43  Aligned_cols=41  Identities=10%  Similarity=0.080  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHCCCCCEEEEECCCCCHHH--HHHHHHHCCCCCCCCC
Q ss_conf             9999999862169848997176202633--8999862577765445
Q gi|254780905|r   64 LMFLFSDILDKYQPVLSVIACNTAFTLI--KDELRSTFPSMAFLGA  107 (271)
Q Consensus        64 ~~~~~~~ll~k~~~~~IVIACNTasa~~--~~~l~~~~~~ipiigi  107 (271)
                      -.+.++.++.+ +++.|++.++...+..  ++.+++  .+||++.+
T Consensus        44 Q~~~i~~~i~~-~vd~iii~~~d~~~~~~~~~~a~~--aGIPVv~~   86 (282)
T cd06318          44 QIADVEDLLTR-GVNVLIINPVDPEGLVPAVAAAKA--AGVPVVVV   86 (282)
T ss_pred             HHHHHHHHHHC-CCCEEEEECCCHHHHHHHHHHHHH--CCCCEEEE
T ss_conf             99999999976-998799811680566999999997--79988997


No 261
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=21.07  E-value=59  Score=13.40  Aligned_cols=83  Identities=12%  Similarity=0.149  Sum_probs=49.8

Q ss_pred             CCCCHHHHHHHHHHHCCC---CCEEEEECCCC------CCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHH
Q ss_conf             791058999999996899---98999941578------989898989999999999999862169848997176202633
Q gi|254780905|r   21 SGIGGLIVLQKMRFLMPE---YHFIYVADDVG------FPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLI   91 (271)
Q Consensus        21 SGiGGLtv~~~l~~~lP~---~~~iY~~D~~~------~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~   91 (271)
                      ||-|==|+.+++.+.+-.   --++.=||.-|      ..|..+++.+...+..+++.++. ++|. .+|++-.+.....
T Consensus         8 sgsGKTTlA~~l~~~L~~~~~~~~~lDGD~iR~~l~~~lgys~~~R~~n~~r~~~lak~l~-~qg~-~VIvs~isp~~~~   85 (149)
T cd02027           8 SGSGKSTIARALEEKLFQRGRPVYVLDGDNVRHGLNKDLGFSREDREENIRRIAEVAKLLA-DAGL-IVIAAFISPYRED   85 (149)
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH-HCCC-EEEEECCCCCHHH
T ss_conf             9999999999999999986997599774889977365559887889999999999999998-3798-2788416788999


Q ss_pred             HHHHHHHCCCCCCC
Q ss_conf             89998625777654
Q gi|254780905|r   92 KDELRSTFPSMAFL  105 (271)
Q Consensus        92 ~~~l~~~~~~ipii  105 (271)
                      -+..|+.+..-+++
T Consensus        86 R~~~r~~i~~~~y~   99 (149)
T cd02027          86 REAARKIIGGGDFL   99 (149)
T ss_pred             HHHHHHHCCCCCEE
T ss_conf             99999874777669


No 262
>TIGR01506 ribC_arch riboflavin synthase; InterPro: IPR006399   These archaeal proteins, bacterial riboflavin biosynthesis alpha chain, catalyze the final step in riboflavin biosynthesis. However, it is more similar in sequence to 6,7-dimethyl-8-ribityllumazine synthase, which catalyzes the previous reaction and which (in bacteria) is called the riboflavin synthase beta chain. ; GO: 0004746 riboflavin synthase activity, 0009231 riboflavin biosynthetic process.
Probab=21.03  E-value=36  Score=14.78  Aligned_cols=47  Identities=19%  Similarity=0.266  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHCCCCCCCC-CCH-------HHHHHHHHCCCCCEEEEECHHHHCCH
Q ss_conf             633899986257776544-547-------99999984078832998506773170
Q gi|254780905|r   89 TLIKDELRSTFPSMAFLG-AVP-------AIKQAAAYTQSGLISILSTPATLRRT  135 (271)
Q Consensus        89 a~~~~~l~~~~~~ipiig-ii~-------~~~~a~~~~~~~~VgiLAT~~Ti~s~  135 (271)
                      .+|.|.||.+.++++++- .||       |.|..+......-|--||-.|--+..
T Consensus        16 ~~AideLr~~~~gi~i~R~TVPGIKDLP~AaKklleE~GCe~VitLGwvG~~ekD   70 (152)
T TIGR01506        16 KVAIDELRKKLAGIKIVRRTVPGIKDLPVAAKKLLEEKGCEIVITLGWVGREEKD   70 (152)
T ss_pred             HHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHCCCCCCEEEECCCCCCCHHH
T ss_conf             6789987642589635751068950446788764121688558866889960247


No 263
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=20.93  E-value=59  Score=13.39  Aligned_cols=65  Identities=17%  Similarity=0.172  Sum_probs=32.5

Q ss_pred             HHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHH---HCCCCCCCCCC---HH---HHHHHHHCCCC--CEEEEECHHH
Q ss_conf             999999862169848997176202633899986---25777654454---79---99999840788--3299850677
Q gi|254780905|r   65 MFLFSDILDKYQPVLSVIACNTAFTLIKDELRS---TFPSMAFLGAV---PA---IKQAAAYTQSG--LISILSTPAT  131 (271)
Q Consensus        65 ~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~---~~~~ipiigii---~~---~~~a~~~~~~~--~VgiLAT~~T  131 (271)
                      -+...|| .+.+-+..++||-|--..|.+.|+.   +. ++|+++..   ++   ++.++..-+..  -|-|+-|.|-
T Consensus       118 ~KLA~~l-kk~~~kvllVaaD~~RpAA~eQL~~La~q~-~v~~f~~~~~~~Pv~Iak~al~~ak~~~~DvvIvDTAGR  193 (451)
T COG0541         118 GKLAKYL-KKKGKKVLLVAADTYRPAAIEQLKQLAEQV-GVPFFGSGTEKDPVEIAKAALEKAKEEGYDVVIVDTAGR  193 (451)
T ss_pred             HHHHHHH-HHCCCCEEEEECCCCCHHHHHHHHHHHHHC-CCCEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf             9999999-974994589850567868999999999860-985316778899799999999999974998899968873


No 264
>COG0683 LivK ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]
Probab=20.92  E-value=59  Score=13.38  Aligned_cols=211  Identities=7%  Similarity=-0.026  Sum_probs=83.2

Q ss_pred             CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHC
Q ss_conf             98999941578989898989999999999999862169848997176202633899986257776544547999999840
Q gi|254780905|r   39 YHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGAVPAIKQAAAYT  118 (271)
Q Consensus        39 ~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~~~~~ipiigii~~~~~a~~~~  118 (271)
                      .+++ ..|++.=|          ....+...+|+.+.++++|+=.++|.++.+...+-++- .+|+|+..-.. +.....
T Consensus        52 velv-~~D~~~dp----------~~a~~~a~~li~~~~V~~vvG~~~S~~~~a~~~v~~~~-~i~~i~p~st~-~~~~~~  118 (366)
T COG0683          52 VELV-VEDDASDP----------ATAAAVARKLITQDGVDAVVGPTTSGVALAASPVAEEA-GVPLISPSATA-PQLTGR  118 (366)
T ss_pred             EEEE-EECCCCCH----------HHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEECCCC-CCCCCC
T ss_conf             9999-83389883----------89999999999872973999806847778769999766-92599945777-210356


Q ss_pred             CCCC-EEEE-ECHHHHCCHHH-HHHHHHCCCCCEEEE-CCC----CCHHHHHHHHHHCCCCC--H-H---HHHHHHHHHH
Q ss_conf             7883-2998-50677317016-899851278857977-056----42257877664267769--7-9---9999999984
Q gi|254780905|r  119 QSGL-ISIL-STPATLRRTYT-SNLIHSYVSQCHIHL-VSS----MILASRVEEYACGIKIK--E-D---EIKKEIEGCF  184 (271)
Q Consensus       119 ~~~~-VgiL-AT~~Ti~s~~y-~~~i~~~~~~~~v~~-~~~----~~lv~~iE~~~~~~~~~--~-~---~~~~~l~~~l  184 (271)
                      ..++ |--. ++... ..... +-+...... -.+.. ...    ..+..............  . +   .....+..++
T Consensus       119 ~~~~~vfr~~~~~~~-q~~~~~~~l~~~~~~-k~v~ii~~~~~yg~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~v  196 (366)
T COG0683         119 GLKPNVFRTGPTDNQ-QAAAAADYLVKKGGK-KRVAIIGDDYAYGEGLADAFKAALKALGGEVVVEEVYAPGDTDFSALV  196 (366)
T ss_pred             CCCCCEEEECCCHHH-HHHHHHHHHHHHCCC-CEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHH
T ss_conf             778776995787036-799999999973788-579999479877789999999999965993323456587887999999


Q ss_pred             HHHHCCCCCEEEECCCCHH---HHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHCCCCCCCCCCCEEEEE-CC--CHHH
Q ss_conf             6541058878998056358---8999999864899789828589999999998642733457788779996-69--9799
Q gi|254780905|r  185 IEKEGKRTDVIVLACTHYP---LIVHVFRQLSPWPVDWLDNSDSIARRARCLLPRINTHQTRVFDDHALFL-SG--KPDI  258 (271)
Q Consensus       185 ~~~~~~~~D~iILGCTHyP---ll~~~i~~~~~~~v~iIDpa~~va~~~~~~L~~~~~~~~~~~~~~~f~~-T~--~~~~  258 (271)
                      .+.+..++|+|++++.|-+   |++..-+.-+...+...|....  ....+.+.......  ......++. ..  ....
T Consensus       197 ~~i~~~~~d~v~~~~~~~~~~~~~r~~~~~G~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~~~~~p~~~~  272 (366)
T COG0683         197 AKIKAAGPDAVLVGGYGPDAALFLRQAREQGLKAKLIGGDGAGT--AEFEEIAGAGGAGA--GLLATAYSTPDDSPANKK  272 (366)
T ss_pred             HHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEECCCCCC--HHHHHHHCCCCCCC--EEEEECCCCCCCCCCHHH
T ss_conf             99875699999987887636999999997688750441366672--34666512234442--699861465456850089


Q ss_pred             HHHHHHHHCC
Q ss_conf             9999998568
Q gi|254780905|r  259 AMRRLMQGFG  268 (271)
Q Consensus       259 ~~~~~~~~~G  268 (271)
                      |.+...+++|
T Consensus       273 f~~~~~~~~g  282 (366)
T COG0683         273 FVEAYKAKYG  282 (366)
T ss_pred             HHHHHHHHHC
T ss_conf             9999999738


No 265
>pfam01396 zf-C4_Topoisom Topoisomerase DNA binding C4 zinc finger.
Probab=20.89  E-value=29  Score=15.40  Aligned_cols=10  Identities=30%  Similarity=0.903  Sum_probs=7.9

Q ss_pred             EEECCCCHHH
Q ss_conf             9980563588
Q gi|254780905|r  195 IVLACTHYPL  204 (271)
Q Consensus       195 iILGCTHyPl  204 (271)
                      --+|||.||=
T Consensus        20 ~F~gCs~yP~   29 (39)
T pfam01396        20 KFVGCSNYPE   29 (39)
T ss_pred             EEEECCCCCC
T ss_conf             0872899989


No 266
>KOG4549 consensus
Probab=20.86  E-value=59  Score=13.38  Aligned_cols=73  Identities=14%  Similarity=0.097  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCC---CCCEEEEECHHHHCCHHHH
Q ss_conf             9999999998621698489971762026338999862577765445479999998407---8832998506773170168
Q gi|254780905|r   62 KRLMFLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGAVPAIKQAAAYTQ---SGLISILSTPATLRRTYTS  138 (271)
Q Consensus        62 ~~~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~~~~~ipiigii~~~~~a~~~~~---~~~VgiLAT~~Ti~s~~y~  138 (271)
                      .-...++..+- +.|+.++ +|.||...-.....-+.+ .++.-|+..+...-.....   ..++|-+ |+.|-+|+.-.
T Consensus        47 ~Di~rIL~dLk-~~GVtl~-~ASRt~ap~iA~q~L~~f-kvk~~Gvlkps~e~ft~~~~g~gsklghf-ke~~n~s~~~~  122 (144)
T KOG4549          47 DDIRRILVDLK-KLGVTLI-HASRTMAPQIASQGLETF-KVKQTGVLKPSLEEFTFEAVGDGSKLGHF-KEFTNNSNSIE  122 (144)
T ss_pred             CCHHHHHHHHH-HCCCEEE-EECCCCCHHHHHHHHHHH-CCCCCCCCCHHHHCCCEEEECCCCCCHHH-HHHHHCCCCCH
T ss_conf             43567899998-6592899-952778889999999985-55755443323323850356276441267-88760467302


No 267
>TIGR00520 asnASE_II L-asparaginases, type II; InterPro: IPR004550   L-asparaginase catalyses the conversion of L-asparagine to L-aspartate. Two related families of asparaginase (L-asparagine amidohydrolase, 3.5.1.1 from EC) are designated type I and type II according to the terminology in Escherichia coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity periplasmic enzyme synthesized with a cleavable signal sequence. This family describes L-asparaginases related to type II of E. coli. Both the cytoplasmic and the cell wall asparaginases of Saccharomyces cerevisiae belong to this set. Members of this set from Acinetobacter glutaminasificans and Pseudomonas fluorescens are described as having both glutaminase and asparaginase activities , . All members are homotetrameric. ; GO: 0004067 asparaginase activity, 0006528 asparagine metabolic process.
Probab=20.85  E-value=59  Score=13.38  Aligned_cols=77  Identities=21%  Similarity=0.166  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHCCCCCEEEEECCCCCCC------CCCC--HHHHHHHHHHHHHHHHHCCCCCEEEEECCCC----CHHHHH
Q ss_conf             899999999689998999941578989------8989--8999999999999986216984899717620----263389
Q gi|254780905|r   26 LIVLQKMRFLMPEYHFIYVADDVGFPY------GNWE--DHALKKRLMFLFSDILDKYQPVLSVIACNTA----FTLIKD   93 (271)
Q Consensus        26 Ltv~~~l~~~lP~~~~iY~~D~~~~PY------G~ks--~~~I~~~~~~~~~~ll~k~~~~~IVIACNTa----sa~~~~   93 (271)
                      ||| +.|.+-.|...     |-||.-|      |+++  .+-..++...+-+ .++....+=|||-=-|=    ||.+++
T Consensus        54 lgv-~~Li~AvP~l~-----~~Ani~gEQi~NvGS~d~N~~~l~kLaK~i~~-~L~~~d~~G~ViTHGTDTlEETAyFL~  126 (360)
T TIGR00520        54 LGV-EDLIEAVPSLK-----DIANIKGEQIVNVGSQDMNEEVLLKLAKRINE-LLASDDVDGIVITHGTDTLEETAYFLD  126 (360)
T ss_pred             EEH-HHHHHHHHHHH-----HHHCCCCCEEEECCCCCCCHHHHHHHHHHHHH-HHHHCCCCEEEEECCCCCHHHHHHHHH
T ss_conf             307-67877405468-----77277762687507767555678999999878-765257872799247884678887776


Q ss_pred             H-HHHHCCCCCCC--C-CCHHH
Q ss_conf             9-98625777654--4-54799
Q gi|254780905|r   94 E-LRSTFPSMAFL--G-AVPAI  111 (271)
Q Consensus        94 ~-l~~~~~~ipii--g-ii~~~  111 (271)
                      . ++.  .+.||+  | |-|+.
T Consensus       127 LTv~s--G~KPVV~VGaMRPaT  146 (360)
T TIGR00520       127 LTVKS--GDKPVVLVGAMRPAT  146 (360)
T ss_pred             HHHHC--CCCCEEEEECCCCHH
T ss_conf             43204--897679870785245


No 268
>TIGR00114 lumazine-synth 6,7-dimethyl-8-ribityllumazine synthase; InterPro: IPR002180 This family includes the beta chain of 6,7-dimethyl-8-ribityllumazine synthase 2.5.1.9 from EC, an enzyme involved in riboflavin biosynthesis. The family also includes a subfamily of distant archaebacterial proteins that may also have the same function for example O28856 from SWISSPROT.; GO: 0004746 riboflavin synthase activity, 0009231 riboflavin biosynthetic process, 0009349 riboflavin synthase complex.
Probab=20.79  E-value=59  Score=13.37  Aligned_cols=19  Identities=21%  Similarity=0.506  Sum_probs=11.5

Q ss_pred             CCCCEEE-ECC------CCHHHHHHH
Q ss_conf             5887899-805------635889999
Q gi|254780905|r  190 KRTDVIV-LAC------THYPLIVHV  208 (271)
Q Consensus       190 ~~~D~iI-LGC------THyPll~~~  208 (271)
                      +-.|++| |||      +||-++.+.
T Consensus        64 kP~DAVi~LG~VIrG~T~HfeyV~~~   89 (148)
T TIGR00114        64 KPYDAVIALGAVIRGGTPHFEYVADE   89 (148)
T ss_pred             CCCCEEEECCEEEECCCCCHHHHHHH
T ss_conf             96335885114773796655777778


No 269
>PRK10651 transcriptional regulator NarL; Provisional
Probab=20.78  E-value=36  Score=14.79  Aligned_cols=15  Identities=20%  Similarity=0.525  Sum_probs=8.9

Q ss_pred             HHHHHHHHHHCCCCC
Q ss_conf             999999998568889
Q gi|254780905|r  257 DIAMRRLMQGFGLKS  271 (271)
Q Consensus       257 ~~~~~~~~~~~G~~~  271 (271)
                      +...+++.+.+|++|
T Consensus       188 ~~h~~~i~~KLgv~n  202 (216)
T PRK10651        188 KVHVKHMLKKMKLKS  202 (216)
T ss_pred             HHHHHHHHHHHCCCC
T ss_conf             999999999848999


No 270
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=20.78  E-value=27  Score=15.62  Aligned_cols=53  Identities=17%  Similarity=0.179  Sum_probs=31.8

Q ss_pred             CCEEEEECCCCCCCCCCC-HHHHHHHHHHHHHH--HHH-------CCCCCEEEEECCCCCHHH
Q ss_conf             989999415789898989-89999999999999--862-------169848997176202633
Q gi|254780905|r   39 YHFIYVADDVGFPYGNWE-DHALKKRLMFLFSD--ILD-------KYQPVLSVIACNTAFTLI   91 (271)
Q Consensus        39 ~~~iY~~D~~~~PYG~ks-~~~I~~~~~~~~~~--ll~-------k~~~~~IVIACNTasa~~   91 (271)
                      .+.+.|.|.-|.|||.+- ++.++-+.+..+++  ++.       ...--.++=|||+.+.-.
T Consensus      1563 K~lVLFcDeInLp~~~~y~~~~vI~FlR~l~e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~g 1625 (3164)
T COG5245        1563 KDLVLFCDEINLPYGFEYYPPTVIVFLRPLVERQGFWSSIAVSWVTICGIILYGACNPGTDEG 1625 (3164)
T ss_pred             HHEEEEEECCCCCCCCCCCCCCEEEEEHHHHHHCCCCCCHHHHHHHHCCEEEECCCCCCCCCC
T ss_conf             321787311477420013897448862877875255553666576211359983689999966


No 271
>PRK08149 ATP synthase SpaL; Validated
Probab=20.65  E-value=60  Score=13.35  Aligned_cols=107  Identities=11%  Similarity=0.093  Sum_probs=56.6

Q ss_pred             CCEEEE-ECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHH
Q ss_conf             870798-7791058999999996899989999415789898989899999999999998621698489971762026338
Q gi|254780905|r   14 NSILIF-DSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIK   92 (271)
Q Consensus        14 ~~Igif-DSGiGGLtv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~   92 (271)
                      ..+||| +||+|==+.+..+.+.- +.+++-+|     =-|+|.. |+.++..    .+....+-+--|+-+||+..-..
T Consensus       151 QR~gIf~gsGvGKs~Ll~~i~~~~-~adv~Via-----~IGeRgr-Ev~efi~----~~~~~~~l~rsvvv~atsd~p~~  219 (427)
T PRK08149        151 QRMGIFASAGCGKTMLMNMLIEHT-EADVFVIG-----LIGERGR-EVTEFVE----MLRASHKKEKCVLVYATSDFSSV  219 (427)
T ss_pred             CEEECCCCCCCCHHHHHHHHHHHC-CCCEEEEE-----EECCCHH-HHHHHHH----HHHCCCCCCEEEEEEECCCCCHH
T ss_conf             540002789986779999888635-89989999-----7023378-9999999----75036852036899715889989


Q ss_pred             HHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEECHHHHCCHHHHH
Q ss_conf             99986257776544547999999840788329985067731701689
Q gi|254780905|r   93 DELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPATLRRTYTSN  139 (271)
Q Consensus        93 ~~l~~~~~~ipiigii~~~~~a~~~~~~~~VgiLAT~~Ti~s~~y~~  139 (271)
                      ..++.     |..++  ++.+-. ..+.++|.++.+.-|--...+.+
T Consensus       220 ~R~~a-----~~~a~--tiAEyf-rd~G~~VLl~~Dsltr~A~A~RE  258 (427)
T PRK08149        220 DRCNA-----ALVAT--TVAEYF-RDQGKRVVLFIDSMTRYARALRD  258 (427)
T ss_pred             HHHHH-----HHHHH--HHHHHH-HHCCCCEEEEECCHHHHHHHHHH
T ss_conf             99999-----98877--899999-86798379961757888889989


No 272
>KOG1268 consensus
Probab=20.64  E-value=60  Score=13.35  Aligned_cols=28  Identities=18%  Similarity=0.339  Sum_probs=16.4

Q ss_pred             CCEEEEECCCC--CHHHHHHHHHHCCCCCC
Q ss_conf             84899717620--26338999862577765
Q gi|254780905|r   77 PVLSVIACNTA--FTLIKDELRSTFPSMAF  104 (271)
Q Consensus        77 ~~~IVIACNTa--sa~~~~~l~~~~~~ipi  104 (271)
                      -.+|.|||-|.  |++|-..+-+....+|+
T Consensus       356 rRli~iacgtSyhs~~A~R~ilEEL~eiPV  385 (670)
T KOG1268         356 RRLIMVACGTSYHSALATRPILEELSEIPV  385 (670)
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHHHHCCCE
T ss_conf             564799844408888777899999856975


No 273
>pfam03446 NAD_binding_2 NAD binding domain of 6-phosphogluconate dehydrogenase. The NAD binding domain of 6-phosphogluconate dehydrogenase adopts a Rossmann fold.
Probab=20.42  E-value=60  Score=13.32  Aligned_cols=21  Identities=14%  Similarity=0.058  Sum_probs=11.9

Q ss_pred             CEEEEECCCCHHHHHHHHHHH
Q ss_conf             707987791058999999996
Q gi|254780905|r   15 SILIFDSGIGGLIVLQKMRFL   35 (271)
Q Consensus        15 ~IgifDSGiGGLtv~~~l~~~   35 (271)
                      .||+.==|.=|..+.+.|.+.
T Consensus         3 ~Ig~IGlG~MG~~ma~~L~~~   23 (163)
T pfam03446         3 KIGFIGLGVMGSPMALNLLKA   23 (163)
T ss_pred             EEEEEEEHHHHHHHHHHHHHC
T ss_conf             899983679899999999977


No 274
>TIGR02637 RhaS rhamnose ABC transporter, rhamnose-binding protein; InterPro: IPR013459   ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs.   ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain .    The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , .   The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , .   Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1).     This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of the gene in Rhizobium leguminosarum  abolishes rhamnose transport and prevents growth on rhamnose as a carbon source..
Probab=20.36  E-value=61  Score=13.31  Aligned_cols=96  Identities=16%  Similarity=0.224  Sum_probs=50.3

Q ss_pred             HHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHH-HCCCCCCCC--
Q ss_conf             99999689998999941578989898989999999999999862169848997176202633899986-257776544--
Q gi|254780905|r   30 QKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAFTLIKDELRS-TFPSMAFLG--  106 (271)
Q Consensus        30 ~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTasa~~~~~l~~-~~~~ipiig--  106 (271)
                      ++..|.|-..+++|-|-+.     .-...||     +++.-|+.| .+++|.|--|=+.|++ +.||+ .--+|+||.  
T Consensus        21 ~eAaKeLG~~~~i~~~p~~-----~~~~gQi-----~~vNsLiaQ-~V~AIaiSAnDpdAlv-palkkA~~rgI~Vv~~D   88 (307)
T TIGR02637        21 EEAAKELGSVEIIYTGPTA-----TTAEGQI-----EVVNSLIAQ-KVDAIAISANDPDALV-PALKKAMKRGIKVVTWD   88 (307)
T ss_pred             HHHHHHHCCEEEEECCCCC-----CCCHHHH-----HHHHHHHHC-CEEEEEECCCCCCHHH-HHHHHHHHCCCEEEEEC
T ss_conf             7888760974799807876-----6400132-----210003105-7006997027852278-99999985698299852


Q ss_pred             --CCHH------------------HHHHHH-HCCC-CCEEEEECHHHH-CCHHH
Q ss_conf             --5479------------------999998-4078-832998506773-17016
Q gi|254780905|r  107 --AVPA------------------IKQAAA-YTQS-GLISILSTPATL-RRTYT  137 (271)
Q Consensus       107 --ii~~------------------~~~a~~-~~~~-~~VgiLAT~~Ti-~s~~y  137 (271)
                        +-|.                  ++.++. .... +.|+||.-..|. +.+..
T Consensus        89 S~v~pegR~l~~n~a~~~~IG~~~vql~A~~~~~~kG~~AILSAa~T~tNQN~W  142 (307)
T TIGR02637        89 SGVAPEGRKLFLNQADAELIGRTQVQLAAEQLEEGKGEIAILSAASTATNQNAW  142 (307)
T ss_pred             CCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHH
T ss_conf             788813454422646831288999999999717898858885033100146799


No 275
>PRK13690 hypothetical protein; Provisional
Probab=20.18  E-value=61  Score=13.28  Aligned_cols=32  Identities=16%  Similarity=0.287  Sum_probs=12.4

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf             89898999999999999986216984899717
Q gi|254780905|r   53 GNWEDHALKKRLMFLFSDILDKYQPVLSVIAC   84 (271)
Q Consensus        53 G~ks~~~I~~~~~~~~~~ll~k~~~~~IVIAC   84 (271)
                      |.-|..++-+-..+.+..++++.|+.+-+=.|
T Consensus        44 G~~~s~eva~~i~~~l~~~~~~~gi~LA~QcC   75 (183)
T PRK13690         44 GTAGSMEVAEAIVEALLEVLNETGIHLAVQGC   75 (183)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHCCCEEEEECH
T ss_conf             77777999999999999998753827876136


No 276
>cd06378 PBP1_iGluR_NMDA_NR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR2 subunit of NMDA receptor family. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR2 subunit of NMDA receptor family. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer composed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. Among NMDA receptor subtypes, the NR2B subunit containing receptors appear particularly important for pain perception; thus NR2B-selective antagonists may be useful in
Probab=20.10  E-value=61  Score=13.27  Aligned_cols=151  Identities=12%  Similarity=0.061  Sum_probs=75.5

Q ss_pred             CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC---HHHHHHHHHHCCCCCCCCCCHHHHHH
Q ss_conf             998999941578989898989999999999999862169848997176202---63389998625777654454799999
Q gi|254780905|r   38 EYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKYQPVLSVIACNTAF---TLIKDELRSTFPSMAFLGAVPAIKQA  114 (271)
Q Consensus        38 ~~~~iY~~D~~~~PYG~ks~~~I~~~~~~~~~~ll~k~~~~~IVIACNTas---a~~~~~l~~~~~~ipiigii~~~~~a  114 (271)
                      +.+.+++.=+..-|         .....++|+.+.. .++..||..=||-+   +..++....++ .+||+|+.-.  .+
T Consensus        34 ~~~~~~~~~n~~~P---------~s~l~~lC~~l~~-~~v~~vv~~~~~~~e~~a~~ldf~S~q~-~iPvigi~g~--~~  100 (362)
T cd06378          34 DVNVVTLLVNETDP---------KSILTQLCDLLST-TKVHGVVFEDDTDQEAVAQILDFISAQT-FLPILGIHGG--SS  100 (362)
T ss_pred             CCCEEEEEECCCCH---------HHHHHHHHHHHHH-CCEEEEEEECCCCCCHHHHHHHHHHHHH-CCCEEEEECC--CC
T ss_conf             44269999258987---------8999999999864-5348999967988522577887654410-2778997056--44


Q ss_pred             -HHHCCCCCEEEEECHHHHC--CHHHHHHHHHCCCCC-EEEE---CCCCCHHHHHHHHHHCCCC--CHHH-----H--HH
Q ss_conf             -9840788329985067731--701689985127885-7977---0564225787766426776--9799-----9--99
Q gi|254780905|r  115 -AAYTQSGLISILSTPATLR--RTYTSNLIHSYVSQC-HIHL---VSSMILASRVEEYACGIKI--KEDE-----I--KK  178 (271)
Q Consensus       115 -~~~~~~~~VgiLAT~~Ti~--s~~y~~~i~~~~~~~-~v~~---~~~~~lv~~iE~~~~~~~~--~~~~-----~--~~  178 (271)
                       +...|+.+.-.|=|...+.  ...--+.+++++=.. -|..   .+-..++..++....+...  ..+.     +  ..
T Consensus       101 ~~~~~k~~~s~FLQ~~ps~~hQa~vm~~iLe~y~W~~FsVVtS~~~G~~~Fl~~v~t~~~~s~~~~~~~~~~~l~~~~~~  180 (362)
T cd06378         101 MIMAAKDSGSTFLQFGPSIEQQAAVMLKIMEEYDWHAFSVVTSRFPGYDDFVSAVRTTVDNSFVGWELQSVLTLDMSDDD  180 (362)
T ss_pred             CEECCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCC
T ss_conf             10068886765660489989999999999997797289999827888799999999864202221024247899723797


Q ss_pred             HHHHHHHHHHCCCCCEEEECCCC
Q ss_conf             99998465410588789980563
Q gi|254780905|r  179 EIEGCFIEKEGKRTDVIVLACTH  201 (271)
Q Consensus       179 ~l~~~l~~~~~~~~D~iILGCTH  201 (271)
                      .....+..+++...-+++|.|++
T Consensus       181 ~~~~~~~~Lk~~esrViLLycS~  203 (362)
T cd06378         181 GDARTQRQLKKLESQVILLYCSK  203 (362)
T ss_pred             CCHHHHHHHHHCCCCEEEEECCH
T ss_conf             50789999772478589996189


Done!