RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780905|ref|YP_003065318.1| glutamate racemase [Candidatus
Liberibacter asiaticus str. psy62]
         (271 letters)



>2jfn_A Glutamate racemase; cell WALL, isomerase, cell shape, UDP-
           murnac-Ala, peptidoglycan biosynthesis, peptidoglycan
           synthesis; HET: GLU UMA; 1.9A {Escherichia coli}
           (A:1-97,A:209-267)
          Length = 156

 Score =  104 bits (260), Expect = 2e-23
 Identities = 40/107 (37%), Positives = 67/107 (62%), Gaps = 3/107 (2%)

Query: 13  QNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDIL 72
           + ++L+FDSG+GGL V  ++R L+P+ H+IY  D+V FPYG   +  + +R++ + + + 
Sbjct: 2   RPTVLVFDSGVGGLSVYDEIRHLLPDLHYIYAFDNVAFPYGEKSEAFIVERVVAIVTAVQ 61

Query: 73  DKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGAVP--AIKQAAAY 117
           ++Y   L+V+ACNTA T+    LR  F     +G VP  AI +  A+
Sbjct: 62  ERYPLALAVVACNTASTVSLPALREKFD-FPVVGVVPGAAIARRTAW 107


>3ist_A Glutamate racemase; structural genomics, cell WALL
           biogenesis/degradation, isomerase, peptidoglycan
           synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB:
           3hfr_A* 3isv_A* (A:1-97,A:210-269)
          Length = 157

 Score =  100 bits (251), Expect = 2e-22
 Identities = 27/124 (21%), Positives = 44/124 (35%), Gaps = 2/124 (1%)

Query: 11  KLQNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSD 70
             + +I   DSG+GGL V++++   +P     Y+ D    PYG  +   + K       +
Sbjct: 3   AXKQAIGFIDSGVGGLTVVREVLKQLPHEQVYYLGDTARCPYGPRDKEEVAKFTWEXT-N 61

Query: 71  ILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGAVPAIKQAAAY-TQSGLISILSTP 129
            L        VIACNTA      ++R                + +A      L+      
Sbjct: 62  FLVDRGIKXLVIACNTATAAALYDIREKLDIPVIGVGEETASEVSALLDYHNLLDATDEE 121

Query: 130 ATLR 133
              R
Sbjct: 122 IEHR 125


>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A
           {Bacillus anthracis} (A:1-96,A:208-267)
          Length = 156

 Score = 99.4 bits (248), Expect = 4e-22
 Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 8/124 (6%)

Query: 11  KLQNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSD 70
           KL  +I + DSG+GGL V +++   +P+   IY+ D    PYG      +++    +  +
Sbjct: 1   KLNRAIGVIDSGVGGLTVAKELIRQLPKERIIYLGDTARCPYGPRSREEVRQFTWEMT-E 59

Query: 71  ILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPA 130
            L      + VIACNTA  ++ +E++   P       +P +      T   + +IL    
Sbjct: 60  HLLDLNIKMLVIACNTATAVVLEEMQKQLP-------IPVVGVIGDETAREVSTILYHSK 112

Query: 131 TLRR 134
            L  
Sbjct: 113 MLNE 116


>2dwu_A Glutamate racemase; isomerase; HET: DGL; 1.60A {Bacillus
           anthracis} (A:1-99,A:212-276)
          Length = 164

 Score = 99.1 bits (247), Expect = 5e-22
 Identities = 26/130 (20%), Positives = 51/130 (39%), Gaps = 4/130 (3%)

Query: 10  KKLQNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFS 69
               + I + DSG+GGL V  ++   +P+    Y+ D+   PYG      ++  +  +  
Sbjct: 4   CHKHSVIGVLDSGVGGLTVASEIIRQLPKESICYIGDNERCPYGPRSVEEVQSFVFEMV- 62

Query: 70  DILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGAVPAIKQAAAY-TQSGLISILST 128
           + L ++     V+ACNTA       L+          A     + +      G+++    
Sbjct: 63  EFLKQFPLKALVVACNTAAAATLAALQEALSIPVIGVAEETAIELSTILQHKGILA--DN 120

Query: 129 PATLRRTYTS 138
                R +T+
Sbjct: 121 LNPKHRFFTT 130


>1b73_A Glutamate racemase; isomerase; 2.30A {Aquifex pyrophilus}
           (A:1-93,A:213-254)
          Length = 135

 Score = 94.8 bits (236), Expect = 1e-20
 Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 1/85 (1%)

Query: 16  ILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKY 75
           I IFDSG+GGL VL+ +R    +   +Y+ D    PYG      + +  +      L   
Sbjct: 3   IGIFDSGVGGLTVLKAIRNRYRKVDIVYLGDTARVPYGIRSKDTIIRYSLECA-GFLKDK 61

Query: 76  QPVLSVIACNTAFTLIKDELRSTFP 100
              + V+ACNTA     + L+    
Sbjct: 62  GVDIIVVACNTASAYALERLKKEIN 86


>2jfz_A Glutamate racemase; cell WALL, isomerase, cell shape,
           peptidoglycan synthesis, peptidoglycan biosynthesis;
           HET: 003 DGL; 1.86A {Helicobacter pylori} PDB: 2jfx_A*
           2jfy_A* 2w4i_A* (A:1-93,A:210-255)
          Length = 139

 Score = 94.5 bits (235), Expect = 1e-20
 Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 2/93 (2%)

Query: 16  ILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKY 75
           I +FDSG+GG  VL+ +         IY  D    PYG  +   +K+  +    D    +
Sbjct: 3   IGVFDSGVGGFSVLKSLLKARLFDEIIYYGDSARVPYGTKDPTTIKQFGLEAL-DFFKPH 61

Query: 76  QPVLSVIACNTAFTLIKDELRSTFPSMAFLGAV 108
           +  L ++ACNTA  L  +E++     +  +G +
Sbjct: 62  EIELLIVACNTASALALEEMQKYSK-IPIVGVI 93


>1zuw_A Glutamate racemase 1; (R)-glutamate, peptidoglycan
           biosynthesis, isomerase; HET: DGL; 1.75A {Bacillus
           subtilis} (A:1-96,A:209-272)
          Length = 160

 Score = 94.1 bits (234), Expect = 2e-20
 Identities = 29/127 (22%), Positives = 59/127 (46%), Gaps = 2/127 (1%)

Query: 13  QNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDIL 72
           +  I + DSG+GGL V +++   +P+ + IYV D    PYG   +  + +    L + +L
Sbjct: 3   EQPIGVIDSGVGGLTVAKEIMRQLPKENIIYVGDTKRCPYGPRPEEEVLQYTWELTNYLL 62

Query: 73  DKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGAVPAIKQAAAY-TQSGLISILSTPAT 131
           + +   + VIACNTA  +  D+++ +             ++ +   +  GL++       
Sbjct: 63  ENHHIKMLVIACNTATAIALDDIQRSVGIPVVGVGDETAREVSTILSYKGLLNQSPIAPD 122

Query: 132 LRRTYTS 138
             +  T+
Sbjct: 123 -HQFLTT 128


>2vvt_A Glutamate racemase; isomerase, peptidoglycan synthesis, cell
           WALL biogenesis/degradation, cell shape, benzyl purine,
           MURI inhibitor; HET: I24 DGL; 1.65A {Enterococcus
           faecalis} PDB: 2jfp_A* 2jfo_A* 2jfu_A 2jfv_A* 2jfw_A*
           (A:1-117,A:229-290)
          Length = 179

 Score = 92.6 bits (230), Expect = 5e-20
 Identities = 34/136 (25%), Positives = 56/136 (41%), Gaps = 8/136 (5%)

Query: 9   EKKLQNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLF 68
               Q +I + DSG+GGL VL++    +P    IY+ D    PYG      + +    + 
Sbjct: 20  HMSNQEAIGLIDSGVGGLTVLKEALKQLPNERLIYLGDTARCPYGPRPAEQVVQFTWEMA 79

Query: 69  SDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILST 128
            D L K +  + VIACNTA  +  +E+++  P       +P +    A T   +  +L  
Sbjct: 80  -DFLLKKRIKMLVIACNTATAVALEEIKAALP-------IPVVGVIGAETVGEVSMLLDY 131

Query: 129 PATLRRTYTSNLIHSY 144
                        H +
Sbjct: 132 FDIAHTPEAPTQPHEF 147



 Score = 26.0 bits (57), Expect = 6.3
 Identities = 14/89 (15%), Positives = 28/89 (31%), Gaps = 6/89 (6%)

Query: 173 EDEIKKEIEGCFIEKEGKRTDVIVLAC-THYPLIVHVFRQLSPWPVDWLDNSDSIARRAR 231
            +++ +           KR  ++V+AC T   + +   +   P PV              
Sbjct: 68  AEQVVQFTWEMADFLLKKRIKMLVIACNTATAVALEEIKAALPIPV-VGVIGAETVGEVS 126

Query: 232 CLLPR---INTHQTRVFDDHALFLSGKPD 257
            LL      +T +      H  + +G   
Sbjct: 127 MLLDYFDIAHTPEAPTQ-PHEFYTTGSAK 154


>2oho_A Glutamate racemase; isomerase; 2.25A {Streptococcus pyogenes
           m1 gas} PDB: 2ohg_A 2ohv_A* (A:106-236)
          Length = 131

 Score = 87.7 bits (217), Expect = 1e-18
 Identities = 25/127 (19%), Positives = 44/127 (34%), Gaps = 5/127 (3%)

Query: 108 VPAIKQAAAYTQSGLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYAC 167
           +P    A   T  G + ++ TP T+        I        +  ++       VE    
Sbjct: 1   LPGASAAIKSTTKGQVGVIGTPMTVASDIYRKKIQLLAPSIQVRSLACPKFVPIVESNEM 60

Query: 168 GIKIKEDEIKKEIEGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSPWPVDWLDNSDSIA 227
              I +  +   +          + D +VL CTHYPL+  + + +    V  +D+     
Sbjct: 61  CSSIAKKIVYDSLAPLV-----GKIDTLVLGCTHYPLLRPIIQNVMGPSVKLIDSGAECV 115

Query: 228 RRARCLL 234
           R    LL
Sbjct: 116 RDISVLL 122


>2jfq_A Glutamate racemase; cell WALL, isomerase, cell shape,
           peptidoglycan synthesis, peptidoglycan biosynthesis;
           HET: DGL; 2.15A {Staphylococcus aureus}
           (A:1-115,A:228-286)
          Length = 174

 Score = 87.6 bits (217), Expect = 2e-18
 Identities = 28/136 (20%), Positives = 53/136 (38%), Gaps = 8/136 (5%)

Query: 11  KLQNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSD 70
            +   I + DSG+GGL V +++   +P     Y+ D    PYG      +K+  + +   
Sbjct: 20  HMNKPIGVIDSGVGGLTVAKEIMRQLPNETIYYLGDIGRCPYGPRPGEQVKQYTVEIA-R 78

Query: 71  ILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPA 130
            L ++   + VIACNTA  +  + L+ T         +  I      T   + ++L+   
Sbjct: 79  KLMEFDIKMLVIACNTATAVALEYLQKTLS-------ISVIGVIGLETAREVSALLTFSN 131

Query: 131 TLRRTYTSNLIHSYVS 146
                        + +
Sbjct: 132 EHASYTEHPDHRFFAT 147


>1zuw_A Glutamate racemase 1; (R)-glutamate, peptidoglycan
           biosynthesis, isomerase; HET: DGL; 1.75A {Bacillus
           subtilis} (A:97-208)
          Length = 112

 Score = 86.5 bits (214), Expect = 3e-18
 Identities = 18/114 (15%), Positives = 44/114 (38%), Gaps = 4/114 (3%)

Query: 108 VPAIKQAAAYTQSGLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYAC 167
            P  + A   T +  I ++ T  T++       + +      +  ++  +L   VE    
Sbjct: 2   QPGARAAIKVTDNQHIGVIGTENTIKSNAYEEALLALNPDLKVENLACPLLVPFVESGKF 61

Query: 168 GIKIKEDEIKKEIEGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSPWPVDWLD 221
             +  ++ +K  +       +    D ++L CTHYP++    ++     V+ + 
Sbjct: 62  LDQTADEIVKTSLY----PLKDTSIDSLILGCTHYPILKEAIQRYMGEHVNIIS 111


>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A
           {Bacillus anthracis} (A:97-207)
          Length = 111

 Score = 86.1 bits (213), Expect = 4e-18
 Identities = 19/113 (16%), Positives = 47/113 (41%), Gaps = 4/113 (3%)

Query: 109 PAIKQAAAYTQSGLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYACG 168
           P  + A   T +  + I+ T  T++       + S  ++  +  ++       VE     
Sbjct: 2   PGSRTALKVTNTYHVGIIGTIGTVKSGAYEEALKSINNRVMVESLACPPFVELVESGNFE 61

Query: 169 IKIKEDEIKKEIEGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSPWPVDWLD 221
            ++  + +++ ++      +    D ++L CTHYP++  V +Q+    V  + 
Sbjct: 62  SEMAYEVVRETLQ----PLKNTDIDTLILGCTHYPILGPVIKQVMGDKVQLIS 110


>2vvt_A Glutamate racemase; isomerase, peptidoglycan synthesis, cell
           WALL biogenesis/degradation, cell shape, benzyl purine,
           MURI inhibitor; HET: I24 DGL; 1.65A {Enterococcus
           faecalis} PDB: 2jfp_A* 2jfo_A* 2jfu_A 2jfv_A* 2jfw_A*
           (A:118-228)
          Length = 111

 Score = 86.1 bits (213), Expect = 4e-18
 Identities = 22/114 (19%), Positives = 45/114 (39%), Gaps = 4/114 (3%)

Query: 108 VPAIKQAAAYTQSGLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYAC 167
           +P  + A   T++  I ++ T  T++       I S      +  ++       VE    
Sbjct: 1   LPGARAAVKVTKNNKIGVIGTLGTIKSASYEIAIKSKAPAIEVTSLACPKFVPIVESNQY 60

Query: 168 GIKIKEDEIKKEIEGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSPWPVDWLD 221
              + +  + + ++        K  D ++L CTHYPL+  V + +    V  +D
Sbjct: 61  RSSVAKKIVAETLQALQ----LKGLDTLILGCTHYPLLRPVIQNVMGSHVTLID 110


>3ist_A Glutamate racemase; structural genomics, cell WALL
           biogenesis/degradation, isomerase, peptidoglycan
           synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB:
           3hfr_A* 3isv_A* (A:98-209)
          Length = 112

 Score = 84.9 bits (210), Expect = 1e-17
 Identities = 22/114 (19%), Positives = 43/114 (37%), Gaps = 4/114 (3%)

Query: 108 VPAIKQAAAYTQSGLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYAC 167
            P  + A   T++  I +L T  T+        +     +  +  ++     S VE    
Sbjct: 2   QPGSRAALKATRNNKIGVLGTLGTVESXAYPTALKGLNRRVEVDSLACPKFVSVVESG-- 59

Query: 168 GIKIKEDEIKKEIEGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSPWPVDWLD 221
             + K    KK +    +  +  + D ++L CTHYPL+  +        V  ++
Sbjct: 60  --EYKSAIAKKVVAESLLPLKSTKIDTVILGCTHYPLLKPIIENFXGDGVAVIN 111


>2oho_A Glutamate racemase; isomerase; 2.25A {Streptococcus pyogenes
           m1 gas} PDB: 2ohg_A 2ohv_A* (A:1-105,A:237-273)
          Length = 142

 Score = 84.4 bits (209), Expect = 1e-17
 Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 1/91 (1%)

Query: 10  KKLQNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFS 69
                 I   DSG+GGL V+ ++   +P    +Y+ D    PYG      +K+    L  
Sbjct: 9   MMDTRPIGFLDSGVGGLTVVCELIRQLPHEKIVYIGDSARAPYGPRPKKQIKEYTWELV- 67

Query: 70  DILDKYQPVLSVIACNTAFTLIKDELRSTFP 100
           + L      + V ACNTA  +  +E+++   
Sbjct: 68  NFLLTQNVKMIVFACNTATAVAWEEVKAALD 98


>2jfq_A Glutamate racemase; cell WALL, isomerase, cell shape,
           peptidoglycan synthesis, peptidoglycan biosynthesis;
           HET: DGL; 2.15A {Staphylococcus aureus} (A:116-227)
          Length = 112

 Score = 82.4 bits (203), Expect = 6e-17
 Identities = 20/113 (17%), Positives = 38/113 (33%), Gaps = 3/113 (2%)

Query: 109 PAIKQAAAYTQSGLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYACG 168
           P  + A   T++  + +L T  T++       I        +H V+       VE+    
Sbjct: 2   PGARTAIMTTRNQNVLVLGTEGTIKSEAYRTHIKRINPHVEVHGVACPGFVPLVEQMRYS 61

Query: 169 IKIKEDEIKKEIEGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSPWPVDWLD 221
                  +  +    +   E   +D ++L CTHYPL+              + 
Sbjct: 62  DPTITSIVIHQTLKRWRNSE---SDTVILGCTHYPLLYKPIYDYFGGKKTVIS 111


>2jfn_A Glutamate racemase; cell WALL, isomerase, cell shape, UDP-
           murnac-Ala, peptidoglycan biosynthesis, peptidoglycan
           synthesis; HET: GLU UMA; 1.9A {Escherichia coli}
           (A:98-208)
          Length = 111

 Score = 82.0 bits (202), Expect = 8e-17
 Identities = 35/112 (31%), Positives = 58/112 (51%), Gaps = 2/112 (1%)

Query: 110 AIKQAAAYTQSGLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYACGI 169
           AIK AA  T +G++ +L+T  T++R+YT  LI  + ++C I ++ S  +    E    G 
Sbjct: 1   AIKPAARLTANGIVGLLATRGTVKRSYTHELIARFANECQIEMLGSAEMVELAEAKLHGE 60

Query: 170 KIKEDEIKKEIEGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSPWPVDWLD 221
            +  D +K+ +      KE    D +VL CTH+PL+     Q+ P     +D
Sbjct: 61  DVSLDALKRILRPWLRMKEP--PDTVVLGCTHFPLLQEELLQVLPEGTRLVD 110


>2dwu_A Glutamate racemase; isomerase; HET: DGL; 1.60A {Bacillus
           anthracis} (A:100-211)
          Length = 112

 Score = 81.5 bits (201), Expect = 1e-16
 Identities = 23/114 (20%), Positives = 45/114 (39%), Gaps = 4/114 (3%)

Query: 108 VPAIKQAAAYTQSGLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYAC 167
            P  + A   T+ G I ++ T  T++       +H   +   +H  +   LA+ VE    
Sbjct: 2   HPGARAAIKVTKKGKIGVIGTVGTIQSNMYEKALHELDTYLKVHSHACPTLATVVENRLE 61

Query: 168 GIKIKEDEIKKEIEGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSPWPVDWLD 221
                  ++K+ +         +  D ++L CTHYPL+    ++     V  + 
Sbjct: 62  DTAYVTQQVKQALL----PLTKEDIDTLILGCTHYPLLESYIKKELGEDVTIIS 111


>1jfl_A Aspartate racemase; alpha-beta structure, HOMO-dimer,
           homologous domains, isomerase; 1.90A {Pyrococcus
           horikoshii OT3} (A:103-212)
          Length = 110

 Score = 76.9 bits (189), Expect = 3e-15
 Identities = 13/109 (11%), Positives = 27/109 (24%), Gaps = 5/109 (4%)

Query: 108 VPAIKQAAAYTQSGLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSSMILASR--VEEY 165
           +    +           +L+T  T+           Y  +             R   E  
Sbjct: 2   IEETAKKVKELGFKKAGLLATTGTIVSGVYEKEFSKYGVEIMTPTEDEQKDVMRGIYEGV 61

Query: 166 ACGIKIKEDEIKKEIEGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSP 214
             G      E+  +      E+     + I+  CT   +++       P
Sbjct: 62  KAGNLKLGRELLLKTAKILEERG---AECIIAGCTEVSVVLKQDDLKVP 107


>1b73_A Glutamate racemase; isomerase; 2.30A {Aquifex pyrophilus}
           (A:94-212)
          Length = 119

 Score = 76.5 bits (188), Expect = 4e-15
 Identities = 22/126 (17%), Positives = 54/126 (42%), Gaps = 8/126 (6%)

Query: 109 PAIKQAAAYTQSGLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYACG 168
           P +K+A   +++  I ++ TPAT++       +        +   +  + A   EE    
Sbjct: 2   PGVKEALKKSRNKKIGVIGTPATVKSGAYQRKLEEG--GADVFAKACPLFAPLAEEGLLE 59

Query: 169 IKIKEDEIKKEIEGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSPWPVDWLDNSDSIAR 228
            +I    ++  ++         + D ++L CTHYPL+    ++      + +D+S++++ 
Sbjct: 60  GEITRKVVEHYLKEFK-----GKIDTLILGCTHYPLLKKEIKKFLG-DAEVVDSSEALSL 113

Query: 229 RARCLL 234
                +
Sbjct: 114 SLHNFI 119


>2jfz_A Glutamate racemase; cell WALL, isomerase, cell shape,
           peptidoglycan synthesis, peptidoglycan biosynthesis;
           HET: 003 DGL; 1.86A {Helicobacter pylori} PDB: 2jfx_A*
           2jfy_A* 2w4i_A* (A:94-209)
          Length = 116

 Score = 75.3 bits (185), Expect = 8e-15
 Identities = 24/120 (20%), Positives = 43/120 (35%), Gaps = 8/120 (6%)

Query: 109 PAIKQA--AAYTQSGLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYA 166
           P+I         ++  I +L T AT++     N +       +I  +++ +    +EE  
Sbjct: 2   PSILAIKRQVEDKNAPILVLGTKATIQSNAYDNALKQQ-GYLNISHLATSLFVPLIEE-- 58

Query: 167 CGIKIKEDEIKKEIEGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSPWPVDWLDNSDSI 226
               I E E+ +     +        +VI+L CTH+PLI                    I
Sbjct: 59  ---SILEGELLETCMHYYFTPLEILPEVIILGCTHFPLIAQKIEGYFMGHFALPTPPLLI 115


>2zsk_A PH1733, 226AA long hypothetical aspartate racemase;
           alpha/beta fold, unknown function; 2.55A {Pyrococcus
           horikoshii} (A:102-212)
          Length = 111

 Score = 73.1 bits (179), Expect = 3e-14
 Identities = 16/110 (14%), Positives = 36/110 (32%), Gaps = 5/110 (4%)

Query: 108 VPAIKQAAAYTQSGLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSSMILASRVE--EY 165
           + A+ +         + +L T  T+   +    +     +  +         +R+   E 
Sbjct: 2   IDAVAEEILKRGVRKVLLLGTKTTMTADFYIKTLEEKGLEVVVPNDEEKEELNRIIFEEL 61

Query: 166 ACGIKIKEDEIKKEIEGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSPW 215
           A G    ++ I + IE     +     + ++L CT  PL +         
Sbjct: 62  AFGNLKNKEWIVRLIEKYRESEG---IEGVILGCTELPLAIKQGDVSVEV 108


>3iwa_A FAD-dependent pyridine nucleotide-disulphide
          oxidoreductase; structural genomics, PSI-2, protein
          structure initiative; 2.30A {Desulfovibrio vulgaris
          DP4} (A:1-131,A:255-332)
          Length = 209

 Score = 27.9 bits (61), Expect = 1.5
 Identities = 7/41 (17%), Positives = 14/41 (34%)

Query: 16 ILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWE 56
          +++  +   G     + + L PE H   +       YG   
Sbjct: 6  VVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRISYGGCG 46


>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase,
           translation termination, ATP-binding, cytoplasm,
           hydrolase, membrane; 2.80A {Schizosaccharomyces pombe}
           (A:1-326)
          Length = 326

 Score = 26.3 bits (57), Expect = 5.0
 Identities = 7/94 (7%), Positives = 19/94 (20%), Gaps = 16/94 (17%)

Query: 188 EGKRTDVIVLACT--------HYPLIVHVFRQLSPWPVDWL----DNSDSIARRARCLLP 235
                ++I  + +           ++  V   +       L    + +  I      +  
Sbjct: 155 SNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGK 214

Query: 236 RIN-THQTRVFDDHALFLSGKPDIA---MRRLMQ 265
                    + D           I       +M 
Sbjct: 215 YTEVKTAFGIKDSVPKGAKIDAQIVIGTPGTVMD 248


>2ffc_A Orotidine 5-monophosphate decarboxylase; PV-PF10_0225,
          SGC, structural genomics, structural genomics
          consortium, lyase; HET: U5P; 1.70A {Plasmodium vivax}
          (A:)
          Length = 353

 Score = 26.1 bits (56), Expect = 5.5
 Identities = 7/25 (28%), Positives = 9/25 (36%)

Query: 10 KKLQNSILIFDSGIGGLIVLQKMRF 34
              +S  +   G    I LQK R 
Sbjct: 6  HHHHHSSGLVPRGSNLKIKLQKRRD 30


>2eq5_A 228AA long hypothetical hydantoin racemase; structural
           genomics, NPPSFA, national project on protein structural
           and functional analyses; 2.20A {Pyrococcus horikoshii
           OT3} (A:104-204)
          Length = 101

 Score = 25.4 bits (56), Expect = 7.9
 Identities = 14/91 (15%), Positives = 31/91 (34%), Gaps = 12/91 (13%)

Query: 110 AIKQAAAYTQSGLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYACGI 169
           +   A A      + +L+      +     +I S +    I       +++ ++      
Sbjct: 2   SSVSALALAYGRRVGVLNLTEETPK-----VIRSILGNNLIAEDHPSGVSNTLDLLT--- 53

Query: 170 KIKEDEIKKEIEGCFIEKEGKRTDVIVLACT 200
               D  ++E+       + K  +VI L CT
Sbjct: 54  ----DWGRREVINAAKRLKEKGVEVIALGCT 80


>1mty_D Methane monooxygenase hydroxylase; dinuclear iron center
           monooxygenase; 1.70A {Methylococcus capsulatus str}
           (D:1-248)
          Length = 248

 Score = 25.2 bits (55), Expect = 9.8
 Identities = 9/88 (10%), Positives = 19/88 (21%), Gaps = 6/88 (6%)

Query: 39  YHFIYVADDVGFPYGN-----WEDHALKKRLMFLFSDILDKYQPVLSVIACNTAF-TLIK 92
            ++ +  +       N          L K +  +FSD       V   +           
Sbjct: 140 VNYYFAKNGQDPAGHNDARRTRTIGPLWKGMKRVFSDGFISGDAVECSLNLQLVGEACFT 199

Query: 93  DELRSTFPSMAFLGAVPAIKQAAAYTQS 120
           + L       A               ++
Sbjct: 200 NPLIVAVTEWAAANGDEITPTVFLSIET 227


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.326    0.140    0.426 

Gapped
Lambda     K      H
   0.267   0.0487    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 2,131,004
Number of extensions: 95480
Number of successful extensions: 351
Number of sequences better than 10.0: 1
Number of HSP's gapped: 330
Number of HSP's successfully gapped: 32
Length of query: 271
Length of database: 4,956,049
Length adjustment: 87
Effective length of query: 184
Effective length of database: 2,015,014
Effective search space: 370762576
Effective search space used: 370762576
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.2 bits)