RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780905|ref|YP_003065318.1| glutamate racemase [Candidatus Liberibacter asiaticus str. psy62] (271 letters) >2jfn_A Glutamate racemase; cell WALL, isomerase, cell shape, UDP- murnac-Ala, peptidoglycan biosynthesis, peptidoglycan synthesis; HET: GLU UMA; 1.9A {Escherichia coli} (A:1-97,A:209-267) Length = 156 Score = 104 bits (260), Expect = 2e-23 Identities = 40/107 (37%), Positives = 67/107 (62%), Gaps = 3/107 (2%) Query: 13 QNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDIL 72 + ++L+FDSG+GGL V ++R L+P+ H+IY D+V FPYG + + +R++ + + + Sbjct: 2 RPTVLVFDSGVGGLSVYDEIRHLLPDLHYIYAFDNVAFPYGEKSEAFIVERVVAIVTAVQ 61 Query: 73 DKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGAVP--AIKQAAAY 117 ++Y L+V+ACNTA T+ LR F +G VP AI + A+ Sbjct: 62 ERYPLALAVVACNTASTVSLPALREKFD-FPVVGVVPGAAIARRTAW 107 >3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A* (A:1-97,A:210-269) Length = 157 Score = 100 bits (251), Expect = 2e-22 Identities = 27/124 (21%), Positives = 44/124 (35%), Gaps = 2/124 (1%) Query: 11 KLQNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSD 70 + +I DSG+GGL V++++ +P Y+ D PYG + + K + Sbjct: 3 AXKQAIGFIDSGVGGLTVVREVLKQLPHEQVYYLGDTARCPYGPRDKEEVAKFTWEXT-N 61 Query: 71 ILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGAVPAIKQAAAY-TQSGLISILSTP 129 L VIACNTA ++R + +A L+ Sbjct: 62 FLVDRGIKXLVIACNTATAAALYDIREKLDIPVIGVGEETASEVSALLDYHNLLDATDEE 121 Query: 130 ATLR 133 R Sbjct: 122 IEHR 125 >2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis} (A:1-96,A:208-267) Length = 156 Score = 99.4 bits (248), Expect = 4e-22 Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 8/124 (6%) Query: 11 KLQNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSD 70 KL +I + DSG+GGL V +++ +P+ IY+ D PYG +++ + + Sbjct: 1 KLNRAIGVIDSGVGGLTVAKELIRQLPKERIIYLGDTARCPYGPRSREEVRQFTWEMT-E 59 Query: 71 ILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPA 130 L + VIACNTA ++ +E++ P +P + T + +IL Sbjct: 60 HLLDLNIKMLVIACNTATAVVLEEMQKQLP-------IPVVGVIGDETAREVSTILYHSK 112 Query: 131 TLRR 134 L Sbjct: 113 MLNE 116 >2dwu_A Glutamate racemase; isomerase; HET: DGL; 1.60A {Bacillus anthracis} (A:1-99,A:212-276) Length = 164 Score = 99.1 bits (247), Expect = 5e-22 Identities = 26/130 (20%), Positives = 51/130 (39%), Gaps = 4/130 (3%) Query: 10 KKLQNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFS 69 + I + DSG+GGL V ++ +P+ Y+ D+ PYG ++ + + Sbjct: 4 CHKHSVIGVLDSGVGGLTVASEIIRQLPKESICYIGDNERCPYGPRSVEEVQSFVFEMV- 62 Query: 70 DILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGAVPAIKQAAAY-TQSGLISILST 128 + L ++ V+ACNTA L+ A + + G+++ Sbjct: 63 EFLKQFPLKALVVACNTAAAATLAALQEALSIPVIGVAEETAIELSTILQHKGILA--DN 120 Query: 129 PATLRRTYTS 138 R +T+ Sbjct: 121 LNPKHRFFTT 130 >1b73_A Glutamate racemase; isomerase; 2.30A {Aquifex pyrophilus} (A:1-93,A:213-254) Length = 135 Score = 94.8 bits (236), Expect = 1e-20 Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 1/85 (1%) Query: 16 ILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKY 75 I IFDSG+GGL VL+ +R + +Y+ D PYG + + + L Sbjct: 3 IGIFDSGVGGLTVLKAIRNRYRKVDIVYLGDTARVPYGIRSKDTIIRYSLECA-GFLKDK 61 Query: 76 QPVLSVIACNTAFTLIKDELRSTFP 100 + V+ACNTA + L+ Sbjct: 62 GVDIIVVACNTASAYALERLKKEIN 86 >2jfz_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: 003 DGL; 1.86A {Helicobacter pylori} PDB: 2jfx_A* 2jfy_A* 2w4i_A* (A:1-93,A:210-255) Length = 139 Score = 94.5 bits (235), Expect = 1e-20 Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 2/93 (2%) Query: 16 ILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDILDKY 75 I +FDSG+GG VL+ + IY D PYG + +K+ + D + Sbjct: 3 IGVFDSGVGGFSVLKSLLKARLFDEIIYYGDSARVPYGTKDPTTIKQFGLEAL-DFFKPH 61 Query: 76 QPVLSVIACNTAFTLIKDELRSTFPSMAFLGAV 108 + L ++ACNTA L +E++ + +G + Sbjct: 62 EIELLIVACNTASALALEEMQKYSK-IPIVGVI 93 >1zuw_A Glutamate racemase 1; (R)-glutamate, peptidoglycan biosynthesis, isomerase; HET: DGL; 1.75A {Bacillus subtilis} (A:1-96,A:209-272) Length = 160 Score = 94.1 bits (234), Expect = 2e-20 Identities = 29/127 (22%), Positives = 59/127 (46%), Gaps = 2/127 (1%) Query: 13 QNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSDIL 72 + I + DSG+GGL V +++ +P+ + IYV D PYG + + + L + +L Sbjct: 3 EQPIGVIDSGVGGLTVAKEIMRQLPKENIIYVGDTKRCPYGPRPEEEVLQYTWELTNYLL 62 Query: 73 DKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGAVPAIKQAAAY-TQSGLISILSTPAT 131 + + + VIACNTA + D+++ + ++ + + GL++ Sbjct: 63 ENHHIKMLVIACNTATAIALDDIQRSVGIPVVGVGDETAREVSTILSYKGLLNQSPIAPD 122 Query: 132 LRRTYTS 138 + T+ Sbjct: 123 -HQFLTT 128 >2vvt_A Glutamate racemase; isomerase, peptidoglycan synthesis, cell WALL biogenesis/degradation, cell shape, benzyl purine, MURI inhibitor; HET: I24 DGL; 1.65A {Enterococcus faecalis} PDB: 2jfp_A* 2jfo_A* 2jfu_A 2jfv_A* 2jfw_A* (A:1-117,A:229-290) Length = 179 Score = 92.6 bits (230), Expect = 5e-20 Identities = 34/136 (25%), Positives = 56/136 (41%), Gaps = 8/136 (5%) Query: 9 EKKLQNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLF 68 Q +I + DSG+GGL VL++ +P IY+ D PYG + + + Sbjct: 20 HMSNQEAIGLIDSGVGGLTVLKEALKQLPNERLIYLGDTARCPYGPRPAEQVVQFTWEMA 79 Query: 69 SDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILST 128 D L K + + VIACNTA + +E+++ P +P + A T + +L Sbjct: 80 -DFLLKKRIKMLVIACNTATAVALEEIKAALP-------IPVVGVIGAETVGEVSMLLDY 131 Query: 129 PATLRRTYTSNLIHSY 144 H + Sbjct: 132 FDIAHTPEAPTQPHEF 147 Score = 26.0 bits (57), Expect = 6.3 Identities = 14/89 (15%), Positives = 28/89 (31%), Gaps = 6/89 (6%) Query: 173 EDEIKKEIEGCFIEKEGKRTDVIVLAC-THYPLIVHVFRQLSPWPVDWLDNSDSIARRAR 231 +++ + KR ++V+AC T + + + P PV Sbjct: 68 AEQVVQFTWEMADFLLKKRIKMLVIACNTATAVALEEIKAALPIPV-VGVIGAETVGEVS 126 Query: 232 CLLPR---INTHQTRVFDDHALFLSGKPD 257 LL +T + H + +G Sbjct: 127 MLLDYFDIAHTPEAPTQ-PHEFYTTGSAK 154 >2oho_A Glutamate racemase; isomerase; 2.25A {Streptococcus pyogenes m1 gas} PDB: 2ohg_A 2ohv_A* (A:106-236) Length = 131 Score = 87.7 bits (217), Expect = 1e-18 Identities = 25/127 (19%), Positives = 44/127 (34%), Gaps = 5/127 (3%) Query: 108 VPAIKQAAAYTQSGLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYAC 167 +P A T G + ++ TP T+ I + ++ VE Sbjct: 1 LPGASAAIKSTTKGQVGVIGTPMTVASDIYRKKIQLLAPSIQVRSLACPKFVPIVESNEM 60 Query: 168 GIKIKEDEIKKEIEGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSPWPVDWLDNSDSIA 227 I + + + + D +VL CTHYPL+ + + + V +D+ Sbjct: 61 CSSIAKKIVYDSLAPLV-----GKIDTLVLGCTHYPLLRPIIQNVMGPSVKLIDSGAECV 115 Query: 228 RRARCLL 234 R LL Sbjct: 116 RDISVLL 122 >2jfq_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: DGL; 2.15A {Staphylococcus aureus} (A:1-115,A:228-286) Length = 174 Score = 87.6 bits (217), Expect = 2e-18 Identities = 28/136 (20%), Positives = 53/136 (38%), Gaps = 8/136 (5%) Query: 11 KLQNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFSD 70 + I + DSG+GGL V +++ +P Y+ D PYG +K+ + + Sbjct: 20 HMNKPIGVIDSGVGGLTVAKEIMRQLPNETIYYLGDIGRCPYGPRPGEQVKQYTVEIA-R 78 Query: 71 ILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILSTPA 130 L ++ + VIACNTA + + L+ T + I T + ++L+ Sbjct: 79 KLMEFDIKMLVIACNTATAVALEYLQKTLS-------ISVIGVIGLETAREVSALLTFSN 131 Query: 131 TLRRTYTSNLIHSYVS 146 + + Sbjct: 132 EHASYTEHPDHRFFAT 147 >1zuw_A Glutamate racemase 1; (R)-glutamate, peptidoglycan biosynthesis, isomerase; HET: DGL; 1.75A {Bacillus subtilis} (A:97-208) Length = 112 Score = 86.5 bits (214), Expect = 3e-18 Identities = 18/114 (15%), Positives = 44/114 (38%), Gaps = 4/114 (3%) Query: 108 VPAIKQAAAYTQSGLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYAC 167 P + A T + I ++ T T++ + + + ++ +L VE Sbjct: 2 QPGARAAIKVTDNQHIGVIGTENTIKSNAYEEALLALNPDLKVENLACPLLVPFVESGKF 61 Query: 168 GIKIKEDEIKKEIEGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSPWPVDWLD 221 + ++ +K + + D ++L CTHYP++ ++ V+ + Sbjct: 62 LDQTADEIVKTSLY----PLKDTSIDSLILGCTHYPILKEAIQRYMGEHVNIIS 111 >2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis} (A:97-207) Length = 111 Score = 86.1 bits (213), Expect = 4e-18 Identities = 19/113 (16%), Positives = 47/113 (41%), Gaps = 4/113 (3%) Query: 109 PAIKQAAAYTQSGLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYACG 168 P + A T + + I+ T T++ + S ++ + ++ VE Sbjct: 2 PGSRTALKVTNTYHVGIIGTIGTVKSGAYEEALKSINNRVMVESLACPPFVELVESGNFE 61 Query: 169 IKIKEDEIKKEIEGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSPWPVDWLD 221 ++ + +++ ++ + D ++L CTHYP++ V +Q+ V + Sbjct: 62 SEMAYEVVRETLQ----PLKNTDIDTLILGCTHYPILGPVIKQVMGDKVQLIS 110 >2vvt_A Glutamate racemase; isomerase, peptidoglycan synthesis, cell WALL biogenesis/degradation, cell shape, benzyl purine, MURI inhibitor; HET: I24 DGL; 1.65A {Enterococcus faecalis} PDB: 2jfp_A* 2jfo_A* 2jfu_A 2jfv_A* 2jfw_A* (A:118-228) Length = 111 Score = 86.1 bits (213), Expect = 4e-18 Identities = 22/114 (19%), Positives = 45/114 (39%), Gaps = 4/114 (3%) Query: 108 VPAIKQAAAYTQSGLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYAC 167 +P + A T++ I ++ T T++ I S + ++ VE Sbjct: 1 LPGARAAVKVTKNNKIGVIGTLGTIKSASYEIAIKSKAPAIEVTSLACPKFVPIVESNQY 60 Query: 168 GIKIKEDEIKKEIEGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSPWPVDWLD 221 + + + + ++ K D ++L CTHYPL+ V + + V +D Sbjct: 61 RSSVAKKIVAETLQALQ----LKGLDTLILGCTHYPLLRPVIQNVMGSHVTLID 110 >3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A* (A:98-209) Length = 112 Score = 84.9 bits (210), Expect = 1e-17 Identities = 22/114 (19%), Positives = 43/114 (37%), Gaps = 4/114 (3%) Query: 108 VPAIKQAAAYTQSGLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYAC 167 P + A T++ I +L T T+ + + + ++ S VE Sbjct: 2 QPGSRAALKATRNNKIGVLGTLGTVESXAYPTALKGLNRRVEVDSLACPKFVSVVESG-- 59 Query: 168 GIKIKEDEIKKEIEGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSPWPVDWLD 221 + K KK + + + + D ++L CTHYPL+ + V ++ Sbjct: 60 --EYKSAIAKKVVAESLLPLKSTKIDTVILGCTHYPLLKPIIENFXGDGVAVIN 111 >2oho_A Glutamate racemase; isomerase; 2.25A {Streptococcus pyogenes m1 gas} PDB: 2ohg_A 2ohv_A* (A:1-105,A:237-273) Length = 142 Score = 84.4 bits (209), Expect = 1e-17 Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 1/91 (1%) Query: 10 KKLQNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHALKKRLMFLFS 69 I DSG+GGL V+ ++ +P +Y+ D PYG +K+ L Sbjct: 9 MMDTRPIGFLDSGVGGLTVVCELIRQLPHEKIVYIGDSARAPYGPRPKKQIKEYTWELV- 67 Query: 70 DILDKYQPVLSVIACNTAFTLIKDELRSTFP 100 + L + V ACNTA + +E+++ Sbjct: 68 NFLLTQNVKMIVFACNTATAVAWEEVKAALD 98 >2jfq_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: DGL; 2.15A {Staphylococcus aureus} (A:116-227) Length = 112 Score = 82.4 bits (203), Expect = 6e-17 Identities = 20/113 (17%), Positives = 38/113 (33%), Gaps = 3/113 (2%) Query: 109 PAIKQAAAYTQSGLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYACG 168 P + A T++ + +L T T++ I +H V+ VE+ Sbjct: 2 PGARTAIMTTRNQNVLVLGTEGTIKSEAYRTHIKRINPHVEVHGVACPGFVPLVEQMRYS 61 Query: 169 IKIKEDEIKKEIEGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSPWPVDWLD 221 + + + E +D ++L CTHYPL+ + Sbjct: 62 DPTITSIVIHQTLKRWRNSE---SDTVILGCTHYPLLYKPIYDYFGGKKTVIS 111 >2jfn_A Glutamate racemase; cell WALL, isomerase, cell shape, UDP- murnac-Ala, peptidoglycan biosynthesis, peptidoglycan synthesis; HET: GLU UMA; 1.9A {Escherichia coli} (A:98-208) Length = 111 Score = 82.0 bits (202), Expect = 8e-17 Identities = 35/112 (31%), Positives = 58/112 (51%), Gaps = 2/112 (1%) Query: 110 AIKQAAAYTQSGLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYACGI 169 AIK AA T +G++ +L+T T++R+YT LI + ++C I ++ S + E G Sbjct: 1 AIKPAARLTANGIVGLLATRGTVKRSYTHELIARFANECQIEMLGSAEMVELAEAKLHGE 60 Query: 170 KIKEDEIKKEIEGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSPWPVDWLD 221 + D +K+ + KE D +VL CTH+PL+ Q+ P +D Sbjct: 61 DVSLDALKRILRPWLRMKEP--PDTVVLGCTHFPLLQEELLQVLPEGTRLVD 110 >2dwu_A Glutamate racemase; isomerase; HET: DGL; 1.60A {Bacillus anthracis} (A:100-211) Length = 112 Score = 81.5 bits (201), Expect = 1e-16 Identities = 23/114 (20%), Positives = 45/114 (39%), Gaps = 4/114 (3%) Query: 108 VPAIKQAAAYTQSGLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYAC 167 P + A T+ G I ++ T T++ +H + +H + LA+ VE Sbjct: 2 HPGARAAIKVTKKGKIGVIGTVGTIQSNMYEKALHELDTYLKVHSHACPTLATVVENRLE 61 Query: 168 GIKIKEDEIKKEIEGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSPWPVDWLD 221 ++K+ + + D ++L CTHYPL+ ++ V + Sbjct: 62 DTAYVTQQVKQALL----PLTKEDIDTLILGCTHYPLLESYIKKELGEDVTIIS 111 >1jfl_A Aspartate racemase; alpha-beta structure, HOMO-dimer, homologous domains, isomerase; 1.90A {Pyrococcus horikoshii OT3} (A:103-212) Length = 110 Score = 76.9 bits (189), Expect = 3e-15 Identities = 13/109 (11%), Positives = 27/109 (24%), Gaps = 5/109 (4%) Query: 108 VPAIKQAAAYTQSGLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSSMILASR--VEEY 165 + + +L+T T+ Y + R E Sbjct: 2 IEETAKKVKELGFKKAGLLATTGTIVSGVYEKEFSKYGVEIMTPTEDEQKDVMRGIYEGV 61 Query: 166 ACGIKIKEDEIKKEIEGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSP 214 G E+ + E+ + I+ CT +++ P Sbjct: 62 KAGNLKLGRELLLKTAKILEERG---AECIIAGCTEVSVVLKQDDLKVP 107 >1b73_A Glutamate racemase; isomerase; 2.30A {Aquifex pyrophilus} (A:94-212) Length = 119 Score = 76.5 bits (188), Expect = 4e-15 Identities = 22/126 (17%), Positives = 54/126 (42%), Gaps = 8/126 (6%) Query: 109 PAIKQAAAYTQSGLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYACG 168 P +K+A +++ I ++ TPAT++ + + + + A EE Sbjct: 2 PGVKEALKKSRNKKIGVIGTPATVKSGAYQRKLEEG--GADVFAKACPLFAPLAEEGLLE 59 Query: 169 IKIKEDEIKKEIEGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSPWPVDWLDNSDSIAR 228 +I ++ ++ + D ++L CTHYPL+ ++ + +D+S++++ Sbjct: 60 GEITRKVVEHYLKEFK-----GKIDTLILGCTHYPLLKKEIKKFLG-DAEVVDSSEALSL 113 Query: 229 RARCLL 234 + Sbjct: 114 SLHNFI 119 >2jfz_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: 003 DGL; 1.86A {Helicobacter pylori} PDB: 2jfx_A* 2jfy_A* 2w4i_A* (A:94-209) Length = 116 Score = 75.3 bits (185), Expect = 8e-15 Identities = 24/120 (20%), Positives = 43/120 (35%), Gaps = 8/120 (6%) Query: 109 PAIKQA--AAYTQSGLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYA 166 P+I ++ I +L T AT++ N + +I +++ + +EE Sbjct: 2 PSILAIKRQVEDKNAPILVLGTKATIQSNAYDNALKQQ-GYLNISHLATSLFVPLIEE-- 58 Query: 167 CGIKIKEDEIKKEIEGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSPWPVDWLDNSDSI 226 I E E+ + + +VI+L CTH+PLI I Sbjct: 59 ---SILEGELLETCMHYYFTPLEILPEVIILGCTHFPLIAQKIEGYFMGHFALPTPPLLI 115 >2zsk_A PH1733, 226AA long hypothetical aspartate racemase; alpha/beta fold, unknown function; 2.55A {Pyrococcus horikoshii} (A:102-212) Length = 111 Score = 73.1 bits (179), Expect = 3e-14 Identities = 16/110 (14%), Positives = 36/110 (32%), Gaps = 5/110 (4%) Query: 108 VPAIKQAAAYTQSGLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSSMILASRVE--EY 165 + A+ + + +L T T+ + + + + +R+ E Sbjct: 2 IDAVAEEILKRGVRKVLLLGTKTTMTADFYIKTLEEKGLEVVVPNDEEKEELNRIIFEEL 61 Query: 166 ACGIKIKEDEIKKEIEGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSPW 215 A G ++ I + IE + + ++L CT PL + Sbjct: 62 AFGNLKNKEWIVRLIEKYRESEG---IEGVILGCTELPLAIKQGDVSVEV 108 >3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structure initiative; 2.30A {Desulfovibrio vulgaris DP4} (A:1-131,A:255-332) Length = 209 Score = 27.9 bits (61), Expect = 1.5 Identities = 7/41 (17%), Positives = 14/41 (34%) Query: 16 ILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWE 56 +++ + G + + L PE H + YG Sbjct: 6 VVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRISYGGCG 46 >3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, ATP-binding, cytoplasm, hydrolase, membrane; 2.80A {Schizosaccharomyces pombe} (A:1-326) Length = 326 Score = 26.3 bits (57), Expect = 5.0 Identities = 7/94 (7%), Positives = 19/94 (20%), Gaps = 16/94 (17%) Query: 188 EGKRTDVIVLACT--------HYPLIVHVFRQLSPWPVDWL----DNSDSIARRARCLLP 235 ++I + + ++ V + L + + I + Sbjct: 155 SNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGK 214 Query: 236 RIN-THQTRVFDDHALFLSGKPDIA---MRRLMQ 265 + D I +M Sbjct: 215 YTEVKTAFGIKDSVPKGAKIDAQIVIGTPGTVMD 248 >2ffc_A Orotidine 5-monophosphate decarboxylase; PV-PF10_0225, SGC, structural genomics, structural genomics consortium, lyase; HET: U5P; 1.70A {Plasmodium vivax} (A:) Length = 353 Score = 26.1 bits (56), Expect = 5.5 Identities = 7/25 (28%), Positives = 9/25 (36%) Query: 10 KKLQNSILIFDSGIGGLIVLQKMRF 34 +S + G I LQK R Sbjct: 6 HHHHHSSGLVPRGSNLKIKLQKRRD 30 >2eq5_A 228AA long hypothetical hydantoin racemase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.20A {Pyrococcus horikoshii OT3} (A:104-204) Length = 101 Score = 25.4 bits (56), Expect = 7.9 Identities = 14/91 (15%), Positives = 31/91 (34%), Gaps = 12/91 (13%) Query: 110 AIKQAAAYTQSGLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYACGI 169 + A A + +L+ + +I S + I +++ ++ Sbjct: 2 SSVSALALAYGRRVGVLNLTEETPK-----VIRSILGNNLIAEDHPSGVSNTLDLLT--- 53 Query: 170 KIKEDEIKKEIEGCFIEKEGKRTDVIVLACT 200 D ++E+ + K +VI L CT Sbjct: 54 ----DWGRREVINAAKRLKEKGVEVIALGCT 80 >1mty_D Methane monooxygenase hydroxylase; dinuclear iron center monooxygenase; 1.70A {Methylococcus capsulatus str} (D:1-248) Length = 248 Score = 25.2 bits (55), Expect = 9.8 Identities = 9/88 (10%), Positives = 19/88 (21%), Gaps = 6/88 (6%) Query: 39 YHFIYVADDVGFPYGN-----WEDHALKKRLMFLFSDILDKYQPVLSVIACNTAF-TLIK 92 ++ + + N L K + +FSD V + Sbjct: 140 VNYYFAKNGQDPAGHNDARRTRTIGPLWKGMKRVFSDGFISGDAVECSLNLQLVGEACFT 199 Query: 93 DELRSTFPSMAFLGAVPAIKQAAAYTQS 120 + L A ++ Sbjct: 200 NPLIVAVTEWAAANGDEITPTVFLSIET 227 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.326 0.140 0.426 Gapped Lambda K H 0.267 0.0487 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 2,131,004 Number of extensions: 95480 Number of successful extensions: 351 Number of sequences better than 10.0: 1 Number of HSP's gapped: 330 Number of HSP's successfully gapped: 32 Length of query: 271 Length of database: 4,956,049 Length adjustment: 87 Effective length of query: 184 Effective length of database: 2,015,014 Effective search space: 370762576 Effective search space used: 370762576 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 54 (25.2 bits)