RPSBLAST alignment of GI: 254780905 and protein with PDBid: 3ojc
>3ojc_A Putative aspartate/glutamate racemase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 1.75A {Yersinia pestis} Length = 231
Score = 75.1 bits (184), Expect = 2e-14
Identities = 34/224 (15%), Positives = 64/224 (28%), Gaps = 22/224 (9%)
Query: 23 IGGL----------IVLQKMRFLMPEYHF----IYVADDVGFPYGNWE-DHALKKRLMFL 67
IGG+ ++ Q ++ + H +Y D + D +L+
Sbjct: 8 IGGMSWESTIPYYRMINQHVKAQLGGLHSAKIILYSVDFHEIEQLQAKGDWQTAAQLLSN 67
Query: 68 FSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGAVPAIKQAAAYTQSGLISILS 127
+ L + V+ NT + D + L A I +L
Sbjct: 68 AAISLKHAGAEVIVVCTNTMHKVADDIEAACGL--PLLHIADATAVQIKQQGIDKIGLLG 125
Query: 128 TPATLR-RTYTSNLIHSYVSQCHIHLVSSMILASRVEEYACGIKIKEDEIKKEIEGCFIE 186
T T+ Y L + + + +R+ + I + + +
Sbjct: 126 TRYTMEQGFYRGRLTEKHGIEVITPDDTDREAVNRIIYEELCLGIISETSRDAYRRVIKK 185
Query: 187 KEGKRTDVIVLACTHYPLIVHVFRQLSPWPVDWLDNSDSIARRA 230
E + I+ CT L+V V D + A A
Sbjct: 186 LEAQGVQGIIFGCTEITLLV----NAQDASVPVFDTTAIHASAA 225