BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780905|ref|YP_003065318.1| glutamate racemase [Candidatus
Liberibacter asiaticus str. psy62]
         (271 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780905|ref|YP_003065318.1| glutamate racemase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 271

 Score =  565 bits (1456), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 271/271 (100%), Positives = 271/271 (100%)

Query: 1   MKIDNYPCEKKLQNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHAL 60
           MKIDNYPCEKKLQNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHAL
Sbjct: 1   MKIDNYPCEKKLQNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHAL 60

Query: 61  KKRLMFLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGAVPAIKQAAAYTQS 120
           KKRLMFLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGAVPAIKQAAAYTQS
Sbjct: 61  KKRLMFLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGAVPAIKQAAAYTQS 120

Query: 121 GLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYACGIKIKEDEIKKEI 180
           GLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYACGIKIKEDEIKKEI
Sbjct: 121 GLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYACGIKIKEDEIKKEI 180

Query: 181 EGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSPWPVDWLDNSDSIARRARCLLPRINTH 240
           EGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSPWPVDWLDNSDSIARRARCLLPRINTH
Sbjct: 181 EGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSPWPVDWLDNSDSIARRARCLLPRINTH 240

Query: 241 QTRVFDDHALFLSGKPDIAMRRLMQGFGLKS 271
           QTRVFDDHALFLSGKPDIAMRRLMQGFGLKS
Sbjct: 241 QTRVFDDHALFLSGKPDIAMRRLMQGFGLKS 271


>537021.9.peg.394_1 
          Length = 142

 Score = 30.0 bits (66), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 9/65 (13%)

Query: 63  RLMFL--FSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGAVPAIKQAAAYTQS 120
           RL+FL     +LDK + ++S ++ N A TLIKD   S        G +P I+ +    ++
Sbjct: 58  RLLFLTDVPGVLDKNRQLISKLSINEARTLIKDGTISG-------GMIPKIETSIKAIEN 110

Query: 121 GLISI 125
           G+ S+
Sbjct: 111 GVKSV 115


>gi|254780854|ref|YP_003065267.1| NADH dehydrogenase subunit C [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 202

 Score = 25.8 bits (55), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 10/39 (25%), Positives = 21/39 (53%), Gaps = 2/39 (5%)

Query: 233 LLPRINTHQTRVFDDHALFLSGKPDIAMRRLMQGFGLKS 271
           + P  +  +  V+D + +F  G PD  +RR++  +G + 
Sbjct: 105 IYPGADWFEREVWDMYGIFFEGHPD--LRRILTDYGFEG 141


>gi|254780537|ref|YP_003064950.1| periplasmic solute binding protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 294

 Score = 24.6 bits (52), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 18/89 (20%)

Query: 10  KKLQNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGF------PYGNWED------ 57
           +K++NSIL   + I   +  +K  F+  E   +Y+A+D GF      P  +  +      
Sbjct: 164 EKIRNSILPLKTRIEK-VDPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMM 222

Query: 58  -HALKK----RLMFLFSDILDKYQPVLSV 81
            HA+ +    ++ F+FS+  +  QP   V
Sbjct: 223 RHAINQMRSHKIKFIFSESTNSDQPAKQV 251


>gi|254780450|ref|YP_003064863.1| two-component sensor histidine kinase/response regulator hybrid
           protein [Candidatus Liberibacter asiaticus str. psy62]
          Length = 803

 Score = 23.5 bits (49), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 9/76 (11%)

Query: 71  ILDKYQPVLSVIACNTAF------TLIKDELRSTFPSMAFLGAVPAIKQAAAYT--QSGL 122
           +++K Q  + ++  +         TL++ ELR T+PS+ F+      + A +    +   
Sbjct: 720 VMEKLQGRVDIVISDVVMPEMDGPTLLR-ELRKTYPSLKFIFISGYAEDAFSKNLPKDAK 778

Query: 123 ISILSTPATLRRTYTS 138
            S LS P +L++  TS
Sbjct: 779 FSFLSKPFSLKQLATS 794


>537021.9.peg.887_1 
          Length = 133

 Score = 23.1 bits (48), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 5/44 (11%)

Query: 36  MPEYHFIYVADDVGFPYGNWEDHALKK-----RLMFLFSDILDK 74
           +P Y + YV     +  G W  +A+KK     + +F ++   D+
Sbjct: 65  IPHYLYGYVPAQKSYSTGKWLRYAIKKIAEVQKTVFTYNSRWDR 108


>gi|254780442|ref|YP_003064855.1| pyruvate kinase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 480

 Score = 22.3 bits (46), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 220 LDNSDSIARRARCLLPRINTHQTRVFDDHALFLSGKPDIAMRRLMQGF 267
           LDN DS+    R +LP      +    D  L   G+  + ++    GF
Sbjct: 95  LDNKDSLGSSDRVMLPHPEIFASIKIGDRLLIDDGRVKLCVQEKGIGF 142


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.326    0.140    0.426 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 171,878
Number of Sequences: 1233
Number of extensions: 6849
Number of successful extensions: 25
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 20
Number of HSP's gapped (non-prelim): 8
length of query: 271
length of database: 328,796
effective HSP length: 73
effective length of query: 198
effective length of database: 238,787
effective search space: 47279826
effective search space used: 47279826
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 37 (18.9 bits)