BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780905|ref|YP_003065318.1| glutamate racemase [Candidatus Liberibacter asiaticus str. psy62] (271 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780905|ref|YP_003065318.1| glutamate racemase [Candidatus Liberibacter asiaticus str. psy62] Length = 271 Score = 565 bits (1456), Expect = e-163, Method: Compositional matrix adjust. Identities = 271/271 (100%), Positives = 271/271 (100%) Query: 1 MKIDNYPCEKKLQNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHAL 60 MKIDNYPCEKKLQNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHAL Sbjct: 1 MKIDNYPCEKKLQNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGFPYGNWEDHAL 60 Query: 61 KKRLMFLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGAVPAIKQAAAYTQS 120 KKRLMFLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGAVPAIKQAAAYTQS Sbjct: 61 KKRLMFLFSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGAVPAIKQAAAYTQS 120 Query: 121 GLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYACGIKIKEDEIKKEI 180 GLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYACGIKIKEDEIKKEI Sbjct: 121 GLISILSTPATLRRTYTSNLIHSYVSQCHIHLVSSMILASRVEEYACGIKIKEDEIKKEI 180 Query: 181 EGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSPWPVDWLDNSDSIARRARCLLPRINTH 240 EGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSPWPVDWLDNSDSIARRARCLLPRINTH Sbjct: 181 EGCFIEKEGKRTDVIVLACTHYPLIVHVFRQLSPWPVDWLDNSDSIARRARCLLPRINTH 240 Query: 241 QTRVFDDHALFLSGKPDIAMRRLMQGFGLKS 271 QTRVFDDHALFLSGKPDIAMRRLMQGFGLKS Sbjct: 241 QTRVFDDHALFLSGKPDIAMRRLMQGFGLKS 271 >537021.9.peg.394_1 Length = 142 Score = 30.0 bits (66), Expect = 0.039, Method: Compositional matrix adjust. Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 9/65 (13%) Query: 63 RLMFL--FSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGAVPAIKQAAAYTQS 120 RL+FL +LDK + ++S ++ N A TLIKD S G +P I+ + ++ Sbjct: 58 RLLFLTDVPGVLDKNRQLISKLSINEARTLIKDGTISG-------GMIPKIETSIKAIEN 110 Query: 121 GLISI 125 G+ S+ Sbjct: 111 GVKSV 115 >gi|254780854|ref|YP_003065267.1| NADH dehydrogenase subunit C [Candidatus Liberibacter asiaticus str. psy62] Length = 202 Score = 25.8 bits (55), Expect = 0.74, Method: Compositional matrix adjust. Identities = 10/39 (25%), Positives = 21/39 (53%), Gaps = 2/39 (5%) Query: 233 LLPRINTHQTRVFDDHALFLSGKPDIAMRRLMQGFGLKS 271 + P + + V+D + +F G PD +RR++ +G + Sbjct: 105 IYPGADWFEREVWDMYGIFFEGHPD--LRRILTDYGFEG 141 >gi|254780537|ref|YP_003064950.1| periplasmic solute binding protein [Candidatus Liberibacter asiaticus str. psy62] Length = 294 Score = 24.6 bits (52), Expect = 1.6, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 18/89 (20%) Query: 10 KKLQNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGF------PYGNWED------ 57 +K++NSIL + I + +K F+ E +Y+A+D GF P + + Sbjct: 164 EKIRNSILPLKTRIEK-VDPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMM 222 Query: 58 -HALKK----RLMFLFSDILDKYQPVLSV 81 HA+ + ++ F+FS+ + QP V Sbjct: 223 RHAINQMRSHKIKFIFSESTNSDQPAKQV 251 >gi|254780450|ref|YP_003064863.1| two-component sensor histidine kinase/response regulator hybrid protein [Candidatus Liberibacter asiaticus str. psy62] Length = 803 Score = 23.5 bits (49), Expect = 4.0, Method: Compositional matrix adjust. Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 9/76 (11%) Query: 71 ILDKYQPVLSVIACNTAF------TLIKDELRSTFPSMAFLGAVPAIKQAAAYT--QSGL 122 +++K Q + ++ + TL++ ELR T+PS+ F+ + A + + Sbjct: 720 VMEKLQGRVDIVISDVVMPEMDGPTLLR-ELRKTYPSLKFIFISGYAEDAFSKNLPKDAK 778 Query: 123 ISILSTPATLRRTYTS 138 S LS P +L++ TS Sbjct: 779 FSFLSKPFSLKQLATS 794 >537021.9.peg.887_1 Length = 133 Score = 23.1 bits (48), Expect = 4.6, Method: Compositional matrix adjust. Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 5/44 (11%) Query: 36 MPEYHFIYVADDVGFPYGNWEDHALKK-----RLMFLFSDILDK 74 +P Y + YV + G W +A+KK + +F ++ D+ Sbjct: 65 IPHYLYGYVPAQKSYSTGKWLRYAIKKIAEVQKTVFTYNSRWDR 108 >gi|254780442|ref|YP_003064855.1| pyruvate kinase [Candidatus Liberibacter asiaticus str. psy62] Length = 480 Score = 22.3 bits (46), Expect = 8.6, Method: Compositional matrix adjust. Identities = 13/48 (27%), Positives = 20/48 (41%) Query: 220 LDNSDSIARRARCLLPRINTHQTRVFDDHALFLSGKPDIAMRRLMQGF 267 LDN DS+ R +LP + D L G+ + ++ GF Sbjct: 95 LDNKDSLGSSDRVMLPHPEIFASIKIGDRLLIDDGRVKLCVQEKGIGF 142 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.326 0.140 0.426 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 171,878 Number of Sequences: 1233 Number of extensions: 6849 Number of successful extensions: 25 Number of sequences better than 100.0: 8 Number of HSP's better than 100.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 20 Number of HSP's gapped (non-prelim): 8 length of query: 271 length of database: 328,796 effective HSP length: 73 effective length of query: 198 effective length of database: 238,787 effective search space: 47279826 effective search space used: 47279826 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 37 (18.9 bits)