BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780907|ref|YP_003065320.1| hypothetical protein
CLIBASIA_04030 [Candidatus Liberibacter asiaticus str. psy62]
         (88 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done



>gi|254780907|ref|YP_003065320.1| hypothetical protein CLIBASIA_04030 [Candidatus Liberibacter
          asiaticus str. psy62]
 gi|254040584|gb|ACT57380.1| hypothetical protein CLIBASIA_04030 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 88

 Score =  142 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 88/88 (100%), Positives = 88/88 (100%)

Query: 1  MKLLFSKIAPVFAMGTALISCDSASDPAKKSNITPIPPAPVALAAPPKNKTEAPKTESSN 60
          MKLLFSKIAPVFAMGTALISCDSASDPAKKSNITPIPPAPVALAAPPKNKTEAPKTESSN
Sbjct: 1  MKLLFSKIAPVFAMGTALISCDSASDPAKKSNITPIPPAPVALAAPPKNKTEAPKTESSN 60

Query: 61 KDKAKEITLDIIDLGIDLLTKEDKKEGA 88
          KDKAKEITLDIIDLGIDLLTKEDKKEGA
Sbjct: 61 KDKAKEITLDIIDLGIDLLTKEDKKEGA 88


>gi|315122661|ref|YP_004063150.1| hypothetical protein CKC_04565 [Candidatus Liberibacter
          solanacearum CLso-ZC1]
 gi|313496063|gb|ADR52662.1| hypothetical protein CKC_04565 [Candidatus Liberibacter
          solanacearum CLso-ZC1]
          Length = 88

 Score = 40.5 bits (93), Expect = 0.078,   Method: Composition-based stats.
 Identities = 20/33 (60%), Positives = 25/33 (75%)

Query: 1  MKLLFSKIAPVFAMGTALISCDSASDPAKKSNI 33
          MKL F K+A +F M  +L SC+SASD AKK+NI
Sbjct: 1  MKLSFPKVASIFTMSMSLYSCESASDTAKKNNI 33


>gi|194880947|ref|XP_001974614.1| GG21841 [Drosophila erecta]
 gi|190657801|gb|EDV55014.1| GG21841 [Drosophila erecta]
          Length = 1356

 Score = 39.0 bits (89), Expect = 0.23,   Method: Composition-based stats.
 Identities = 20/40 (50%), Positives = 26/40 (65%), Gaps = 4/40 (10%)

Query: 21  CDSASDPA--KKSNITPIPPAPVALAAPPKNKTEAPKTES 58
           CD   +PA  K+S   P+PP+ VA+AAPP   TE+PK  S
Sbjct: 730 CDEEEEPAANKESPAHPVPPSSVAVAAPP--ATESPKKSS 767


>gi|261199872|ref|XP_002626337.1| conserved hypothetical protein [Ajellomyces dermatitidis SLH14081]
 gi|239594545|gb|EEQ77126.1| conserved hypothetical protein [Ajellomyces dermatitidis SLH14081]
          Length = 287

 Score = 38.6 bits (88), Expect = 0.29,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 27/53 (50%)

Query: 23  SASDPAKKSNITPIPPAPVALAAPPKNKTEAPKTESSNKDKAKEITLDIIDLG 75
           SA+  + K+N +P P A   +   P N  E P T SSNK     + + +I LG
Sbjct: 139 SAATQSTKTNASPAPTARPPIMTDPGNPPETPSTSSSNKIWIAGVVVGVIALG 191


>gi|258577193|ref|XP_002542778.1| hypothetical protein UREG_02294 [Uncinocarpus reesii 1704]
 gi|237903044|gb|EEP77445.1| hypothetical protein UREG_02294 [Uncinocarpus reesii 1704]
          Length = 2149

 Score = 37.0 bits (84), Expect = 0.77,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 5/57 (8%)

Query: 30   KSNITPIPPAPVALAAPPKNK-----TEAPKTESSNKDKAKEITLDIIDLGIDLLTK 81
            +SN  P  P+P A+A PP  +       AP     +  K KE+  D++++ +D +T+
Sbjct: 1571 ESNFLPSVPSPTAVAQPPAQQPPIKIANAPGARVGSLQKVKEMLRDVLEIPLDEITE 1627


>gi|167851526|ref|ZP_02477034.1| hypothetical protein BpseB_40203 [Burkholderia pseudomallei B7210]
          Length = 587

 Score = 37.0 bits (84), Expect = 0.85,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 3/64 (4%)

Query: 16  TALISCDSASDPAKKSNITPIPPAPVALAAPPKNKTEAPKTESSNKDKAKEITLDIIDLG 75
           T  +  +  +D A  S  TP+  A  A   PP  +T A  T +S   KAK +  D +D  
Sbjct: 353 TGTVHVEPGADAATTSE-TPV--AVTATNLPPSTRTSAAPTTTSEAPKAKAVEPDTVDAL 409

Query: 76  IDLL 79
           +DLL
Sbjct: 410 LDLL 413


>gi|327350452|gb|EGE79309.1| hypothetical protein BDDG_02248 [Ajellomyces dermatitidis ATCC
           18188]
          Length = 727

 Score = 36.3 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 27/53 (50%)

Query: 23  SASDPAKKSNITPIPPAPVALAAPPKNKTEAPKTESSNKDKAKEITLDIIDLG 75
           +++  + K+N +P P A   +   P N  E P T SSNK     + + +I LG
Sbjct: 579 TSATQSTKTNASPAPTARPPIMTDPGNPPETPSTSSSNKIWIAGVVVGVIALG 631


>gi|239607937|gb|EEQ84924.1| conserved hypothetical protein [Ajellomyces dermatitidis ER-3]
          Length = 298

 Score = 36.3 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 27/53 (50%)

Query: 23  SASDPAKKSNITPIPPAPVALAAPPKNKTEAPKTESSNKDKAKEITLDIIDLG 75
           +++  + K+N +P P A   +   P N  E P T SSNK     + + +I LG
Sbjct: 150 TSATQSTKTNASPAPTARPPIMTDPGNPPETPSTSSSNKIWIAGVVVGVIALG 202


>gi|332362953|gb|EGJ40742.1| subtilisin family serine protease [Streptococcus sanguinis SK49]
          Length = 1506

 Score = 36.3 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 3/50 (6%)

Query: 15 GTALISCDSASDPAKKS---NITPIPPAPVALAAPPKNKTEAPKTESSNK 61
          G A  +  SA++PA ++      PI PAPV  AAP  +++ A  TE +++
Sbjct: 45 GQATAAVVSATEPASQAATPETQPISPAPVEKAAPASSESVASSTEQASQ 94


>gi|332296504|ref|YP_004438427.1| flagellar M-ring protein FliF [Thermodesulfobium narugense DSM
           14796]
 gi|332179607|gb|AEE15296.1| flagellar M-ring protein FliF [Thermodesulfobium narugense DSM
           14796]
          Length = 515

 Score = 34.0 bits (76), Expect = 6.7,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 9   APVFAMGTALISCDSASDPAKKSNITPIPPAPVALAAPPKNKTEAPKTESSNKDKAKEIT 68
           +PV      +IS    +D +K  N TP  P+       P  +T AP T SS+  K +EIT
Sbjct: 282 SPVVGQNGIVISSKVTTDTSKSQNTTPQTPSATVPQGIPSYQTPAP-TSSSSSRKTEEIT 340


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.309    0.127    0.348 

Lambda     K      H
   0.267   0.0399    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 682,741,194
Number of Sequences: 14124377
Number of extensions: 21856599
Number of successful extensions: 144802
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 144756
Number of HSP's gapped (non-prelim): 58
length of query: 88
length of database: 4,842,793,630
effective HSP length: 58
effective length of query: 30
effective length of database: 4,023,579,764
effective search space: 120707392920
effective search space used: 120707392920
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 75 (33.5 bits)