RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780907|ref|YP_003065320.1| hypothetical protein
CLIBASIA_04030 [Candidatus Liberibacter asiaticus str. psy62]
         (88 letters)



>gnl|CDD|171499 PRK12438, PRK12438, hypothetical protein; Provisional.
          Length = 991

 Score = 27.5 bits (61), Expect = 0.67
 Identities = 15/56 (26%), Positives = 18/56 (32%), Gaps = 2/56 (3%)

Query: 11  VFAMGTALISCDSASDPAKKSNITPIPPAPVALAAPPKNKTE--APKTESSNKDKA 64
           VF  GT  ++     D A        PPAP     PP+      AP         A
Sbjct: 894 VFGPGTGRVATAPGGDAASAPPPGAGPPAPPQAVPPPRTTQPPAAPPRGPDVPPAA 949


>gnl|CDD|178698 PLN03153, PLN03153, hypothetical protein; Provisional.
          Length = 537

 Score = 26.0 bits (57), Expect = 2.1
 Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 4/52 (7%)

Query: 29  KKSNITPIPPAPVALAAPPKNKTEAPK----TESSNKDKAKEITLDIIDLGI 76
               +TP+PP P + + P     +  +    +E        E++L+ I  GI
Sbjct: 77  HHPIVTPLPPPPSSPSLPSSLLLDHFRNRSLSEIERLKVEAELSLNHIMFGI 128


>gnl|CDD|183391 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed.
          Length = 1228

 Score = 25.6 bits (57), Expect = 2.8
 Identities = 11/44 (25%), Positives = 16/44 (36%)

Query: 23  SASDPAKKSNITPIPPAPVALAAPPKNKTEAPKTESSNKDKAKE 66
           + + PA  +   P  PA  A AA       A    ++    A E
Sbjct: 71  APAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVE 114



 Score = 25.6 bits (57), Expect = 2.9
 Identities = 7/36 (19%), Positives = 11/36 (30%)

Query: 23  SASDPAKKSNITPIPPAPVALAAPPKNKTEAPKTES 58
           + +     +     PP P A AA        P   +
Sbjct: 69  APAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAA 104


>gnl|CDD|152182 pfam11746, DUF3303, Protein of unknown function (DUF3303).
          Several members are annotated as being LysM domain-like
          proteins, but these did not match any LysM domains
          reported in the literature.
          Length = 91

 Score = 25.7 bits (57), Expect = 2.8
 Identities = 8/24 (33%), Positives = 11/24 (45%)

Query: 2  KLLFSKIAPVFAMGTALISCDSAS 25
          +LL    AP    G A++  D A 
Sbjct: 38 ELLGRWHAPGSGRGFAIVEADDAK 61


>gnl|CDD|178437 PLN02844, PLN02844, oxidoreductase/ferric-chelate reductase.
          Length = 722

 Score = 25.6 bits (56), Expect = 3.2
 Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 5/45 (11%)

Query: 18  LISCDSASDPAKKSNITPIPPAPVALAAPPKNKTEAPKTESSNKD 62
           LI  +    P++  +      + V +AA  + KT   KT S   D
Sbjct: 555 LIGLNHIFIPSEHKS-----HSGVKMAASGEMKTAKEKTPSWVVD 594


>gnl|CDD|166661 PLN03020, PLN03020, low-temperature-induced protein; Provisional.
          Length = 556

 Score = 25.0 bits (54), Expect = 4.8
 Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 2/44 (4%)

Query: 35  PIPPAPVALAAPPK--NKTEAPKTESSNKDKAKEITLDIIDLGI 76
           P+ PA       P+  +  E P  + +  +K    T  I D  I
Sbjct: 288 PLSPAETKSTEDPQSTSNAEKPSNQKTYTEKISSATSAIADKAI 331


>gnl|CDD|163433 TIGR03721, exospore_TM, BclB C-terminal domain.  This domain occurs
           as the C-terminal region in a number of proteins that
           have extensive collagen-like triple helix repeat
           regions. Member domains are predicted by TmHMM to have
           four or five transmembrane helices. Members are found
           mostly in the Firmicutes, but also in Acanthamoeba
           polyphaga mimivirus. Members include spore surface
           glycoprotein BclB from Bacillus anthracis, a protein of
           the exosporium. The exosporium is an additional
           outermost spore layer, lacking in B. subtilis and most
           other spore formers, consisting of a basal layer and,
           above it, a nap of fine filaments.
          Length = 165

 Score = 24.9 bits (54), Expect = 5.5
 Identities = 15/42 (35%), Positives = 20/42 (47%)

Query: 5   FSKIAPVFAMGTALISCDSASDPAKKSNITPIPPAPVALAAP 46
           FS  A +  +G   I+      PA  +  TP+P APV L  P
Sbjct: 68  FSATAALALLGPVTITAQLYIAPAPSNVFTPVPGAPVTLTPP 109


>gnl|CDD|181844 PRK09424, pntA, NAD(P) transhydrogenase subunit alpha; Provisional.
          Length = 509

 Score = 24.4 bits (54), Expect = 6.4
 Identities = 9/28 (32%), Positives = 13/28 (46%)

Query: 37  PPAPVALAAPPKNKTEAPKTESSNKDKA 64
           PP P+ ++A P     AP  +   K  A
Sbjct: 369 PPPPIQVSAAPAAAAAAPAAKEEEKKPA 396


>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau;
           Provisional.
          Length = 620

 Score = 24.5 bits (53), Expect = 6.5
 Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 2/41 (4%)

Query: 23  SASDPAKKSNITP--IPPAPVALAAPPKNKTEAPKTESSNK 61
            A  P+  S  TP   PP   +   PP  +  AP+  +S K
Sbjct: 418 PAELPSPASAPTPEQQPPVARSAPLPPSPQASAPRNVASGK 458


>gnl|CDD|179276 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional.
          Length = 475

 Score = 24.5 bits (53), Expect = 6.8
 Identities = 12/55 (21%), Positives = 16/55 (29%)

Query: 11 VFAMGTALISCDSASDPAKKSNITPIPPAPVALAAPPKNKTEAPKTESSNKDKAK 65
          +F  G A     +   PA      P                 AP+ E   KDK +
Sbjct: 8  IFGKGEAEQPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPR 62


>gnl|CDD|148336 pfam06674, DUF1176, Protein of unknown function (DUF1176).  This
           family consists of several hypothetical bacterial
           proteins of around 340 residues in length. Members of
           this family contain six highly conserved cysteine
           residues. The function of this family is unknown.
          Length = 338

 Score = 24.3 bits (53), Expect = 7.4
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 9/59 (15%)

Query: 16  TALISCDSASDPAKKSNITPIPPAPVALAAPPKNKTEAPKTESSNKDKAKEITLDIIDL 74
           TAL+     + PA  S++ P PP PV  AAP       P     +  +A+ +   I+ L
Sbjct: 153 TALVR--KGTKPA--SSVPPAPPLPVIRAAPA-----PPAAAPLDPAEARLLADPILAL 202


>gnl|CDD|185607 PTZ00422, PTZ00422, glideosome-associated protein 50; Provisional.
          Length = 394

 Score = 24.4 bits (53), Expect = 7.6
 Identities = 8/19 (42%), Positives = 12/19 (63%)

Query: 15  GTALISCDSASDPAKKSNI 33
           GTA I+C S  +  +KS +
Sbjct: 267 GTAHINCGSGGNSGRKSIM 285


>gnl|CDD|179396 PRK02255, PRK02255, putrescine carbamoyltransferase; Provisional.
          Length = 338

 Score = 24.3 bits (53), Expect = 7.8
 Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 2/28 (7%)

Query: 61 KDKAKEITLDIIDLGIDLLTKEDKKEGA 88
           D  KE  LDII+LG  L  KE  K G 
Sbjct: 10 NDFTKEEILDIIELG--LKLKEAIKNGY 35


>gnl|CDD|178744 PLN03205, PLN03205, ATR interacting protein; Provisional.
          Length = 652

 Score = 23.9 bits (51), Expect = 9.6
 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 2/35 (5%)

Query: 28 AKKSNITPIPPA--PVALAAPPKNKTEAPKTESSN 60
          AK      +PP   P  L APP ++   P T+ S+
Sbjct: 24 AKADMYRLLPPPSLPTFLPAPPVSEMTTPSTKISS 58


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.309    0.127    0.348 

Gapped
Lambda     K      H
   0.267   0.0602    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,355,053
Number of extensions: 69141
Number of successful extensions: 240
Number of sequences better than 10.0: 1
Number of HSP's gapped: 232
Number of HSP's successfully gapped: 51
Length of query: 88
Length of database: 5,994,473
Length adjustment: 57
Effective length of query: 31
Effective length of database: 4,762,817
Effective search space: 147647327
Effective search space used: 147647327
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 50 (23.3 bits)