RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780907|ref|YP_003065320.1| hypothetical protein CLIBASIA_04030 [Candidatus Liberibacter asiaticus str. psy62] (88 letters) >2egz_A 3-dehydroquinate dehydratase; aquifex aeolicus VF5, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TLA; 1.75A {Aquifex aeolicus} PDB: 2ysw_A (A:) Length = 219 Score = 24.1 bits (52), Expect = 6.8 Identities = 10/31 (32%), Positives = 14/31 (45%) Query: 53 APKTESSNKDKAKEITLDIIDLGIDLLTKED 83 S N KAKE DI++L +D + Sbjct: 8 DDTNFSENLKKAKEKGADIVELRVDQFSDTS 38 >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} (A:1-136) Length = 136 Score = 23.9 bits (51), Expect = 7.7 Identities = 3/40 (7%), Positives = 9/40 (22%), Gaps = 6/40 (15%) Query: 48 KNKTEAPKTESSNKDKAKEITLDIIDLGIDLLTKEDKKEG 87 + S + + D + + + G Sbjct: 2 GSSHHHHHHSSGLVPRGSHMEED------GGIIRRIQTRG 35 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.309 0.127 0.348 Gapped Lambda K H 0.267 0.0576 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 584,193 Number of extensions: 20790 Number of successful extensions: 44 Number of sequences better than 10.0: 1 Number of HSP's gapped: 44 Number of HSP's successfully gapped: 7 Length of query: 88 Length of database: 4,956,049 Length adjustment: 50 Effective length of query: 38 Effective length of database: 3,265,799 Effective search space: 124100362 Effective search space used: 124100362 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.7 bits) S2: 50 (23.4 bits)