BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780907|ref|YP_003065320.1| hypothetical protein
CLIBASIA_04030 [Candidatus Liberibacter asiaticus str. psy62]
(88 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780907|ref|YP_003065320.1| hypothetical protein CLIBASIA_04030 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 88
Score = 169 bits (428), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 88/88 (100%), Positives = 88/88 (100%)
Query: 1 MKLLFSKIAPVFAMGTALISCDSASDPAKKSNITPIPPAPVALAAPPKNKTEAPKTESSN 60
MKLLFSKIAPVFAMGTALISCDSASDPAKKSNITPIPPAPVALAAPPKNKTEAPKTESSN
Sbjct: 1 MKLLFSKIAPVFAMGTALISCDSASDPAKKSNITPIPPAPVALAAPPKNKTEAPKTESSN 60
Query: 61 KDKAKEITLDIIDLGIDLLTKEDKKEGA 88
KDKAKEITLDIIDLGIDLLTKEDKKEGA
Sbjct: 61 KDKAKEITLDIIDLGIDLLTKEDKKEGA 88
>gi|254780823|ref|YP_003065236.1| double-strand break repair protein AddB [Candidatus Liberibacter
asiaticus str. psy62]
Length = 1040
Score = 21.9 bits (45), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 10/36 (27%), Positives = 19/36 (52%)
Query: 45 APPKNKTEAPKTESSNKDKAKEITLDIIDLGIDLLT 80
A KN T P +S ++ KE+ + ++D + +T
Sbjct: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCIT 532
>gi|254780742|ref|YP_003065155.1| hypothetical protein CLIBASIA_03145 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 419
Score = 21.2 bits (43), Expect = 3.4, Method: Composition-based stats.
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 14 MGTALISCDSASDPAKKSNITPIPPAP 40
+ TA++ D K NI +PP P
Sbjct: 361 VATAILIAQGIWDIGKMVNIEELPPKP 387
>gi|255764467|ref|YP_003064798.2| Type I secretion system ATPase, PrtD [Candidatus Liberibacter
asiaticus str. psy62]
Length = 565
Score = 21.2 bits (43), Expect = 3.9, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 15 GTALISCDSASDPAKKSNITPIPPAPVALAAPP 47
GT+L S S+ D K+ +P+ PA + + P
Sbjct: 106 GTSLFSIISSLDQLKQFITSPVLPALLDILFTP 138
>gi|254780690|ref|YP_003065103.1| flagellar biosynthesis protein FlhB [Candidatus Liberibacter
asiaticus str. psy62]
Length = 354
Score = 20.4 bits (41), Expect = 5.9, Method: Composition-based stats.
Identities = 7/11 (63%), Positives = 9/11 (81%)
Query: 47 PKNKTEAPKTE 57
P NKTEAP ++
Sbjct: 7 PDNKTEAPSSK 17
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.309 0.127 0.348
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,421
Number of Sequences: 1233
Number of extensions: 1551
Number of successful extensions: 6
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 88
length of database: 328,796
effective HSP length: 56
effective length of query: 32
effective length of database: 259,748
effective search space: 8311936
effective search space used: 8311936
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.8 bits)
S2: 31 (16.5 bits)