Query gi|254780908|ref|YP_003065321.1| hypothetical protein CLIBASIA_04035 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 35 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Wed Jun 1 18:53:04 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780908.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >3dkb_A Tumor necrosis factor, 13.8 52 0.0015 16.2 0.3 12 14-25 2-13 (70) 2 >2w42_A PIWI, putative unchara 9.2 86 0.0025 15.2 0.2 12 17-28 19-30 (51) 3 >2zze_A Alanyl-tRNA synthetase 6.9 1.4E+02 0.0042 14.2 0.4 27 8-34 20-46 (99) 4 >1hux_A Activator of (R)-2-hyd 6.7 2.3E+02 0.0068 13.2 1.5 32 2-33 1-32 (127) 5 >2ddh_A Acyl-COA oxidase; beta 6.4 2.3E+02 0.0068 13.2 1.4 17 7-23 12-28 (142) 6 >1egd_A Medium chain acyl-COA 5.5 2.8E+02 0.0084 12.8 2.2 20 7-26 13-32 (112) 7 >2vig_A Short-chain specific a 5.5 2.9E+02 0.0085 12.7 2.3 18 7-24 15-32 (111) 8 >2dvl_A Acyl-COA dehydrogenase 5.0 3.1E+02 0.0092 12.6 2.2 27 7-33 12-38 (104) 9 >1rx0_A Acyl-COA dehydrogenase 4.6 3.3E+02 0.0098 12.4 2.3 17 7-23 15-31 (110) 10 >1k0i_A P-hydroxybenzoate hydr 3.9 3.2E+02 0.0095 12.5 0.7 11 22-32 137-147 (149) No 1 >>3dkb_A Tumor necrosis factor, alpha-induced protein 3; OTU domain, DUB domain, apoptosis, cytoplasm, DNA-binding, hydrolase, metal-binding, nucleus; 2.50A {Homo sapiens} PDB: 2vfj_A (A:287-356) Probab=13.81 E-value=52 Score=16.16 Aligned_cols=12 Identities=50% Similarity=0.850 Sum_probs=9.4 Q ss_pred CEEEEEEECCCC Q ss_conf 012332212553 Q gi|254780908|r 14 QEMRAVPIANTG 25 (35) Q Consensus 14 qemravpiantg 25 (35) .|.||||..|.+ T Consensus 2 PEIRAVPLv~~~ 13 (70) T 3dkb_A 2 PEIRAVPLVNRD 13 (70) T ss_dssp SCBSEEESEEEC T ss_pred CCCCEEEEECCC T ss_conf 876432101477 No 2 >>2w42_A PIWI, putative uncharacterized protein; RNAI, RISC, argonaute, PIWI domain, protein/DNA complex; 1.90A {Archaeoglobus fulgidus} PDB: 1ytu_A 2bgg_A 1w9h_A (A:1-41,A:167-176) Probab=9.21 E-value=86 Score=15.15 Aligned_cols=12 Identities=50% Similarity=0.974 Sum_probs=9.2 Q ss_pred EEEEECCCCEEE Q ss_conf 332212553034 Q gi|254780908|r 17 RAVPIANTGAIL 28 (35) Q Consensus 17 ravpiantgail 28 (35) ..|||.|||... T Consensus 19 asvpisntgeli 30 (51) T 2w42_A 19 ASVPISNTGELI 30 (51) T ss_dssp CEEESSCHHHHH T ss_pred CCCCCCCCHHHH T ss_conf 700454302777 No 3 >>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A* (A:504-602) Probab=6.86 E-value=1.4e+02 Score=14.17 Aligned_cols=27 Identities=11% Similarity=0.151 Sum_probs=17.2 Q ss_pred CCCCCCCEEEEEEECCCCEEEECCCEE Q ss_conf 588552012332212553034215410 Q gi|254780908|r 8 GSDAESQEMRAVPIANTGAILEKSNFI 34 (35) Q Consensus 8 gsdaesqemravpiantgaileksnfi 34 (35) .+...+.+-+.......+.+|+++.|- T Consensus 20 ~~~~~~~~~~v~~~~~~~ivld~T~FY 46 (99) T 2zze_A 20 DPFMXEFDAXVLRVIXDWVILDATAFY 46 (99) T ss_dssp CTTCCEEEEEEEEEETTEEEESEECSC T ss_pred EEEEEEEEEEEEEEECCEEECCCCEEC T ss_conf 000234577898765051533774213 No 4 >>1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} (A:1-95,A:239-270) Probab=6.69 E-value=2.3e+02 Score=13.18 Aligned_cols=32 Identities=22% Similarity=0.331 Sum_probs=25.6 Q ss_pred EEEEEECCCCCCCEEEEEEECCCCEEEECCCE Q ss_conf 69998458855201233221255303421541 Q gi|254780908|r 2 MLLFLAGSDAESQEMRAVPIANTGAILEKSNF 33 (35) Q Consensus 2 mllflagsdaesqemravpiantgaileksnf 33 (35) |-.+..|-|.-+...|++-+...|.++.+..+ T Consensus 1 M~~y~LGIDiGtTsvKavl~D~dG~iia~~~~ 32 (127) T 1hux_A 1 MSIYTLGIDVGSTASKCIILKDGKEIVAKSLV 32 (127) T ss_dssp -CCEEEEEEECSSEEEEEEEETTTEEEEEEEE T ss_pred CCEEEEEECCCCCCEEEEEECCCCEEEEEEEE T ss_conf 95389853147741137998353023225662 No 5 >>2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle, oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus} (A:132-273) Probab=6.43 E-value=2.3e+02 Score=13.18 Aligned_cols=17 Identities=18% Similarity=0.102 Sum_probs=13.0 Q ss_pred ECCCCCCCEEEEEEECC Q ss_conf 45885520123322125 Q gi|254780908|r 7 AGSDAESQEMRAVPIAN 23 (35) Q Consensus 7 agsdaesqemravpian 23 (35) +|||+.+-+.+|++-.. T Consensus 12 aGSD~~~~~t~A~~~~~ 28 (142) T 2ddh_A 12 HGTHLRGLETTATYDPK 28 (142) T ss_dssp BSSCGGGCCCEEEEETT T ss_pred CCCCCCCCCCEEEECCC T ss_conf 77873447416897588 No 6 >>1egd_A Medium chain acyl-COA dehydrogenase; flavoprotein, electron transfer; HET: FAD; 2.40A {Homo sapiens} (A:128-239) Probab=5.54 E-value=2.8e+02 Score=12.77 Aligned_cols=20 Identities=25% Similarity=0.225 Sum_probs=13.3 Q ss_pred ECCCCCCCEEEEEEECCCCE Q ss_conf 45885520123322125530 Q gi|254780908|r 7 AGSDAESQEMRAVPIANTGA 26 (35) Q Consensus 7 agsdaesqemravpiantga 26 (35) +|||+.+-+.+|++-...-. T Consensus 13 ~GSD~~~~~t~A~~~~~~~~ 32 (112) T 1egd_A 13 AGSDVAGIKTKAEKKGDEYI 32 (112) T ss_dssp BSSSGGGCCCEEEECSSEEE T ss_pred CCCCCCCCEEEEEEECCEEE T ss_conf 78766575479999688679 No 7 >>2vig_A Short-chain specific acyl-COA dehydrogenase,; fatty acid metabolism, FAD, polymorphism, flavoprotein, mitochondrion, disease mutation; HET: FAD COS; 1.9A {Homo sapiens} PDB: 1jqi_A* (A:117-227) Probab=5.46 E-value=2.9e+02 Score=12.74 Aligned_cols=18 Identities=28% Similarity=0.322 Sum_probs=13.1 Q ss_pred ECCCCCCCEEEEEEECCC Q ss_conf 458855201233221255 Q gi|254780908|r 7 AGSDAESQEMRAVPIANT 24 (35) Q Consensus 7 agsdaesqemravpiant 24 (35) +|||+.+-+++|.+-... T Consensus 15 ~Gsd~~~~~t~a~~~~~~ 32 (111) T 2vig_A 15 NGSDAGAASTTARAEGDS 32 (111) T ss_dssp BSSSGGGCCCEEEEETTE T ss_pred CCCCCCCCEEEEEEECCE T ss_conf 565555432699994997 No 8 >>2dvl_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: FAD; 2.50A {Thermus thermophilus HB8} (A:117-220) Probab=4.96 E-value=3.1e+02 Score=12.58 Aligned_cols=27 Identities=26% Similarity=0.230 Sum_probs=18.0 Q ss_pred ECCCCCCCEEEEEEECCCCEEEECCCE Q ss_conf 458855201233221255303421541 Q gi|254780908|r 7 AGSDAESQEMRAVPIANTGAILEKSNF 33 (35) Q Consensus 7 agsdaesqemravpiantgaileksnf 33 (35) +|||.-+-+.+|+|..+--.|.-...| T Consensus 12 ~Gsd~~~~~T~a~~~~dg~~i~g~K~~ 38 (104) T 2dvl_A 12 AGSDAKSLRAEARRVKGGFVLNGVKSW 38 (104) T ss_dssp CSSCGGGCCCEEEEETTEEEEEEEEEE T ss_pred CCCCCCCCEEEEEEECCEEEEEEEEEE T ss_conf 788755632599995998999989996 No 9 >>1rx0_A Acyl-COA dehydrogenase family member 8, mitochondrial; flavoprotein, coenzyme A, oxidoreductase; HET: FAD 2MC; 1.77A {Homo sapiens} (A:129-238) Probab=4.61 E-value=3.3e+02 Score=12.45 Aligned_cols=17 Identities=35% Similarity=0.294 Sum_probs=12.0 Q ss_pred ECCCCCCCEEEEEEECC Q ss_conf 45885520123322125 Q gi|254780908|r 7 AGSDAESQEMRAVPIAN 23 (35) Q Consensus 7 agsdaesqemravpian 23 (35) +|||..+-+.+|.|-.. T Consensus 15 ~GsD~~~~~t~A~~~~d 31 (110) T 1rx0_A 15 SGSDAASLLTSAKKQGD 31 (110) T ss_dssp BSSSGGGCCCEEEEETT T ss_pred CCCCCCCCEEEEEEECC T ss_conf 88872136479999799 No 10 >>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, mechanism, structure, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} (A:40-102,A:182-267) Probab=3.94 E-value=3.2e+02 Score=12.51 Aligned_cols=11 Identities=55% Similarity=0.437 Sum_probs=7.7 Q ss_pred CCCCEEEECCC Q ss_conf 25530342154 Q gi|254780908|r 22 ANTGAILEKSN 32 (35) Q Consensus 22 antgaileksn 32 (35) -+||.|+|||- T Consensus 137 L~~Gp~ieKsI 147 (149) T 1k0i_A 137 LVTGPSLEKSI 147 (149) T ss_dssp CCCCCEEEEEE T ss_pred CCCCCCHHCCC T ss_conf 14562011133 Done!