Query gi|254780908|ref|YP_003065321.1| hypothetical protein CLIBASIA_04035 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 35
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Tue May 31 22:44:48 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780908.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nqz_A MCP-02, secreted metall 5.1 1.7E+02 0.007 13.1 0.7 21 14-34 158-178 (180)
2 2g2q_A Glutaredoxin-2; thiored 3.2 2.8E+02 0.012 12.1 0.7 16 8-23 75-90 (124)
3 1yua_A Topoisomerase I; gene-r 3.0 3.1E+02 0.013 11.9 0.6 18 4-21 36-54 (122)
4 2oxg_Y SOXY protein; immunoglo 3.0 3.4E+02 0.014 11.7 2.3 24 11-34 92-115 (124)
5 3kzt_A Uncharacterized protein 2.5 3.9E+02 0.016 11.4 0.8 19 2-22 106-124 (143)
6 1njh_A Protein YOJF; structura 2.4 4E+02 0.017 11.4 1.9 21 4-24 95-115 (119)
7 2fd4_A Avirulence protein AVRP 2.2 4.2E+02 0.018 11.2 0.5 13 6-18 20-32 (122)
8 2kc5_A Hydrogenase-2 operon pr 1.9 4.2E+02 0.017 11.3 0.2 19 14-32 26-44 (162)
9 2d3m_A Pentaketide chromone sy 1.9 5E+02 0.021 10.9 1.1 17 5-21 389-405 (406)
10 2p0u_A Stilbenecarboxylate syn 1.6 5.7E+02 0.024 10.6 1.3 27 1-27 387-413 (413)
No 1
>3nqz_A MCP-02, secreted metalloprotease MCP02; autoprocessed complex, the thermolysin family, hydro; 2.05A {Pseudoalteromonas SP} PDB: 3nqy_A
Probab=5.10 E-value=1.7e+02 Score=13.14 Aligned_cols=21 Identities=24% Similarity=0.186 Sum_probs=14.9
Q ss_pred CEEEEEEECCCCEEEECCCEE
Q ss_conf 012332212553034215410
Q gi|254780908|r 14 QEMRAVPIANTGAILEKSNFI 34 (35)
Q Consensus 14 qemravpiantgaileksnfi 34 (35)
......-=|.||.||++-|.|
T Consensus 158 ~~~~~~VDA~TG~vL~~~d~i 178 (180)
T 3nqz_A 158 SRPYLIIDANTGEVLLSYDNL 178 (180)
T ss_dssp BCEEEEEETTTCCEEEEEECC
T ss_pred CCEEEEEECCCCCEEEEECCC
T ss_conf 505899989988472331065
No 2
>2g2q_A Glutaredoxin-2; thioredoxin-fold, oxidoreductase, poxvirus, orthopox; 2.50A {Vaccinia virus}
Probab=3.22 E-value=2.8e+02 Score=12.07 Aligned_cols=16 Identities=19% Similarity=0.304 Sum_probs=12.5
Q ss_pred CCCCCCCEEEEEEECC
Q ss_conf 5885520123322125
Q gi|254780908|r 8 GSDAESQEMRAVPIAN 23 (35)
Q Consensus 8 gsdaesqemravpian 23 (35)
--|.+|.+|..|||..
T Consensus 75 Kydp~s~qmA~V~i~k 90 (124)
T 2g2q_A 75 KYNPQTKQMAFVDINK 90 (124)
T ss_dssp EEETTTTEEEECCCGG
T ss_pred EECCCCCCEEEEEHHH
T ss_conf 8768767178985257
No 3
>1yua_A Topoisomerase I; gene-regulating protein, DNA binding protein; NMR {Escherichia coli} SCOP: g.41.3.3 g.41.3.3
Probab=2.97 E-value=3.1e+02 Score=11.90 Aligned_cols=18 Identities=39% Similarity=0.525 Sum_probs=11.7
Q ss_pred EEEECCCC-CCCEEEEEEE
Q ss_conf 99845885-5201233221
Q gi|254780908|r 4 LFLAGSDA-ESQEMRAVPI 21 (35)
Q Consensus 4 lflagsda-esqemravpi 21 (35)
||||.|.- .+.|.||--+
T Consensus 36 lFLAAS~FPKnRETRAP~V 54 (122)
T 1yua_A 36 VFLAANTFPKSRETRAPLV 54 (122)
T ss_dssp CEEEETTTTSCCCCCSCBH
T ss_pred EEEECCCCCCCCCCCCCCH
T ss_conf 7874377997545557428
No 4
>2oxg_Y SOXY protein; immunoglobulin-like beta-sandwich fold, transport protein; 1.40A {Paracoccus denitrificans} PDB: 2oxh_Y* 2ox5_Y*
Probab=2.95 E-value=3.4e+02 Score=11.69 Aligned_cols=24 Identities=17% Similarity=0.371 Sum_probs=18.1
Q ss_pred CCCCEEEEEEECCCCEEEECCCEE
Q ss_conf 552012332212553034215410
Q gi|254780908|r 11 AESQEMRAVPIANTGAILEKSNFI 34 (35)
Q Consensus 11 aesqemravpiantgaileksnfi 34 (35)
+++|..|||--.+.|..+.-+.++
T Consensus 92 ~~ss~V~avae~~dG~~~~a~~~V 115 (124)
T 2oxg_Y 92 AQTQDVIALAKMADGSVVKAQTTV 115 (124)
T ss_dssp SSSEEEEEEEEETTSCEEEEEEEE
T ss_pred CCCCCEEEEEEECCCEEEEEEEEE
T ss_conf 698757999991899599997899
No 5
>3kzt_A Uncharacterized protein; protein of unknown function, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=2.54 E-value=3.9e+02 Score=11.44 Aligned_cols=19 Identities=32% Similarity=0.275 Sum_probs=12.2
Q ss_pred EEEEEECCCCCCCEEEEEEEC
Q ss_conf 699984588552012332212
Q gi|254780908|r 2 MLLFLAGSDAESQEMRAVPIA 22 (35)
Q Consensus 2 mllflagsdaesqemravpia 22 (35)
|.-|++ +.+||-+|+|.|.
T Consensus 106 mV~y~~--~~~~~~~r~v~IP 124 (143)
T 3kzt_A 106 EVNYTS--AKGSQYERAVSIP 124 (143)
T ss_dssp EEEEEE--TTTSTTCEEEEEE
T ss_pred EEEEEE--CCCCCHHHHCCCC
T ss_conf 999863--6873111003452
No 6
>1njh_A Protein YOJF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.70A {Bacillus subtilis} SCOP: b.128.1.1
Probab=2.43 E-value=4e+02 Score=11.37 Aligned_cols=21 Identities=19% Similarity=0.286 Sum_probs=13.6
Q ss_pred EEEECCCCCCCEEEEEEECCC
Q ss_conf 998458855201233221255
Q gi|254780908|r 4 LFLAGSDAESQEMRAVPIANT 24 (35)
Q Consensus 4 lflagsdaesqemravpiant 24 (35)
|.|||-|.+.+-.-|.-|..|
T Consensus 95 LLlAGhd~~GrLavaLelS~~ 115 (119)
T 1njh_A 95 LLMAGHLPGGKLAISLQISEK 115 (119)
T ss_dssp EEEEEEETTTTEEEEEEEESS
T ss_pred EEECCCCCCCCEEEEEEECCC
T ss_conf 898311889849999994377
No 7
>2fd4_A Avirulence protein AVRPTOB; ring finger, U-BOX, ubiquitin ligase; 1.80A {Pseudomonas syringae}
Probab=2.18 E-value=4.2e+02 Score=11.25 Aligned_cols=13 Identities=38% Similarity=0.555 Sum_probs=8.3
Q ss_pred EECCCCCCCEEEE
Q ss_conf 8458855201233
Q gi|254780908|r 6 LAGSDAESQEMRA 18 (35)
Q Consensus 6 lagsdaesqemra 18 (35)
..-.|||||||.-
T Consensus 20 iskadaes~~~gF 32 (122)
T 2fd4_A 20 ISKADAESEELGF 32 (122)
T ss_dssp EECC------CCC
T ss_pred HHHHHHHHCCCCC
T ss_conf 7665553235686
No 8
>2kc5_A Hydrogenase-2 operon protein HYBE; chaperone; NMR {Escherichia coli k-12}
Probab=1.93 E-value=4.2e+02 Score=11.29 Aligned_cols=19 Identities=11% Similarity=0.151 Sum_probs=9.4
Q ss_pred CEEEEEEECCCCEEEECCC
Q ss_conf 0123322125530342154
Q gi|254780908|r 14 QEMRAVPIANTGAILEKSN 32 (35)
Q Consensus 14 qemravpiantgaileksn 32 (35)
..||.+|+-|.+--.|-..
T Consensus 26 ~~M~dlP~~n~aL~VeAvg 44 (162)
T 2kc5_A 26 RSMHDLSFLHPSMPVYVSD 44 (162)
T ss_dssp CCCGGGCCCCCSSCCEEEE
T ss_pred HHHCCCCCCCCCCCEEEEC
T ss_conf 8855687668888568835
No 9
>2d3m_A Pentaketide chromone synthase; chalcone synthase, polyketide synthase, transferase; HET: COA; 1.60A {Aloe arborescens} PDB: 2d51_A 2d52_A*
Probab=1.87 E-value=5e+02 Score=10.94 Aligned_cols=17 Identities=24% Similarity=0.489 Sum_probs=7.6
Q ss_pred EEECCCCCCCEEEEEEE
Q ss_conf 98458855201233221
Q gi|254780908|r 5 FLAGSDAESQEMRAVPI 21 (35)
Q Consensus 5 flagsdaesqemravpi 21 (35)
|=+|-..|+--+|.|||
T Consensus 389 fG~G~t~~~~lLr~~~~ 405 (406)
T 2d3m_A 389 FGPGITVETILLHSLPL 405 (406)
T ss_dssp EETTTEEEEEEEEECBC
T ss_pred ECHHHHHHHHHHHCCCC
T ss_conf 93788499999832757
No 10
>2p0u_A Stilbenecarboxylate synthase 2; polyketide synthase, PKS type III, transferase; 1.90A {Marchantia polymorpha}
Probab=1.56 E-value=5.7e+02 Score=10.64 Aligned_cols=27 Identities=22% Similarity=0.444 Sum_probs=0.0
Q ss_pred CEEEEEECCCCCCCEEEEEEECCCCEE
Q ss_conf 969998458855201233221255303
Q gi|254780908|r 1 MMLLFLAGSDAESQEMRAVPIANTGAI 27 (35)
Q Consensus 1 mmllflagsdaesqemravpiantgai 27 (35)
+|.-|=+|-..++--+|+||+-+..+.
T Consensus 387 ll~gfG~Glt~~~~llR~~p~~~~~~~ 413 (413)
T 2p0u_A 387 FLIGFGPGLTVETLLLRALPLQQAERV 413 (413)
T ss_dssp EEEEEETTTEEEEEEEEECBCCCC---
T ss_pred EEEEECHHHHHHHHHHEECCCCCCCCC
T ss_conf 999995799799999734754555569
Done!