Query gi|254780908|ref|YP_003065321.1| hypothetical protein CLIBASIA_04035 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 35
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Wed Jun 1 10:28:33 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780908.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3c8ya3 d.58.1.5 (A:127-209) F 6.1 75 0.0055 13.6 0.7 11 21-31 73-83 (83)
2 d2p3pa1 d.383.1.1 (A:66-262) H 3.5 1.7E+02 0.013 12.0 3.0 25 4-28 60-84 (197)
3 d1k0ia2 d.16.1.2 (A:174-275) p 2.8 2E+02 0.015 11.6 0.7 11 22-32 82-92 (102)
4 d1njha_ b.128.1.1 (A:) Hypothe 2.8 2.1E+02 0.015 11.6 1.9 21 4-24 94-114 (118)
5 d3cpta1 d.110.7.1 (A:3-118) ME 2.3 1.3E+02 0.0094 12.5 -0.8 11 19-29 93-103 (116)
6 d2fug34 d.58.1.5 (3:96-246) NA 2.1 2.3E+02 0.016 11.4 0.3 11 21-31 134-144 (151)
7 d1nexa2 d.42.1.1 (A:4-103) Cen 1.8 1.3E+02 0.0098 12.5 -1.3 14 17-30 44-58 (72)
8 d2e1ba1 b.43.3.6 (A:1-87) AlaX 1.5 2.5E+02 0.018 11.2 -0.4 15 19-33 23-37 (87)
9 d2nn6c2 d.101.1.1 (C:188-276) 1.3 3.5E+02 0.025 10.5 -0.1 11 18-28 4-14 (89)
10 d2bida_ f.1.4.1 (A:) Proapopto 1.3 3.9E+02 0.028 10.3 0.1 9 7-15 74-82 (197)
No 1
>d3c8ya3 d.58.1.5 (A:127-209) Fe-only hydrogenase, second domain {Clostridium pasteurianum [TaxId: 1501]}
Probab=6.09 E-value=75 Score=13.62 Aligned_cols=11 Identities=36% Similarity=0.347 Sum_probs=7.4
Q ss_pred ECCCCEEEECC
Q ss_conf 12553034215
Q gi|254780908|r 21 IANTGAILEKS 31 (35)
Q Consensus 21 iantgaileks 31 (35)
+-.+|||.|||
T Consensus 73 vCP~gAi~~k~ 83 (83)
T d3c8ya3 73 ACPVAALSEKS 83 (83)
T ss_dssp HCSSTTEEECC
T ss_pred HCCCCCCCCCC
T ss_conf 18887634469
No 2
>d2p3pa1 d.383.1.1 (A:66-262) Hypothetical protein PG1388 {Porphyromonas gingivalis [TaxId: 837]}
Probab=3.46 E-value=1.7e+02 Score=11.96 Aligned_cols=25 Identities=16% Similarity=0.377 Sum_probs=19.5
Q ss_pred EEEECCCCCCCEEEEEEECCCCEEE
Q ss_conf 9984588552012332212553034
Q gi|254780908|r 4 LFLAGSDAESQEMRAVPIANTGAIL 28 (35)
Q Consensus 4 lflagsdaesqemravpiantgail 28 (35)
+++--+..-+-||+..|..|.+-++
T Consensus 60 l~lqtt~~St~qMklLP~~dst~vi 84 (197)
T d2p3pa1 60 IRIQTSTVGEVFMRILPFSDSSSVI 84 (197)
T ss_dssp EEEEESSSCEEEEEEEESSSSCEEE
T ss_pred EEEECCCCCCEEEEEEECCCCCEEE
T ss_conf 9997156650789996405997499
No 3
>d1k0ia2 d.16.1.2 (A:174-275) p-Hydroxybenzoate hydroxylase (PHBH) {Pseudomonas aeruginosa [TaxId: 287]}
Probab=2.77 E-value=2e+02 Score=11.65 Aligned_cols=11 Identities=55% Similarity=0.437 Sum_probs=7.8
Q ss_pred CCCCEEEECCC
Q ss_conf 25530342154
Q gi|254780908|r 22 ANTGAILEKSN 32 (35)
Q Consensus 22 antgaileksn 32 (35)
-.+|.++|||-
T Consensus 82 l~~Gp~~eKsi 92 (102)
T d1k0ia2 82 LVTGPSLEKSI 92 (102)
T ss_dssp CCCCCEEEEEE
T ss_pred CCCCCCCEECC
T ss_conf 42068101213
No 4
>d1njha_ b.128.1.1 (A:) Hypothetical protein YojF {Bacillus subtilis [TaxId: 1423]}
Probab=2.77 E-value=2.1e+02 Score=11.58 Aligned_cols=21 Identities=19% Similarity=0.286 Sum_probs=14.0
Q ss_pred EEEECCCCCCCEEEEEEECCC
Q ss_conf 998458855201233221255
Q gi|254780908|r 4 LFLAGSDAESQEMRAVPIANT 24 (35)
Q Consensus 4 lflagsdaesqemravpiant 24 (35)
|.|||-|.+.+-.-|.-|..|
T Consensus 94 LLlAGhd~~GrLavaLeiS~~ 114 (118)
T d1njha_ 94 LLMAGHLPGGKLAISLQISEK 114 (118)
T ss_dssp EEEEEEETTTTEEEEEEEESS
T ss_pred EEECCCCCCCCEEEEEEECCC
T ss_conf 798330889849999993377
No 5
>d3cpta1 d.110.7.1 (A:3-118) MEK binding partner 1, MP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.32 E-value=1.3e+02 Score=12.55 Aligned_cols=11 Identities=45% Similarity=0.537 Sum_probs=5.7
Q ss_pred EEECCCCEEEE
Q ss_conf 22125530342
Q gi|254780908|r 19 VPIANTGAILE 29 (35)
Q Consensus 19 vpiantgaile 29 (35)
.+-+|||+|+.
T Consensus 93 ~~~aNtG~Il~ 103 (116)
T d3cpta1 93 SSSANTGLIVS 103 (116)
T ss_dssp ETTSCHHHHHH
T ss_pred CCCCCHHHHHH
T ss_conf 48888688997
No 6
>d2fug34 d.58.1.5 (3:96-246) NADH-quinone oxidoreductase chain 3, Nqo3, domain 2 {Thermus thermophilus [TaxId: 274]}
Probab=2.15 E-value=2.3e+02 Score=11.40 Aligned_cols=11 Identities=36% Similarity=0.652 Sum_probs=5.9
Q ss_pred ECCCCEEEECC
Q ss_conf 12553034215
Q gi|254780908|r 21 IANTGAILEKS 31 (35)
Q Consensus 21 iantgaileks 31 (35)
+--||||.||.
T Consensus 134 vCPtGAL~ek~ 144 (151)
T d2fug34 134 ICPVGALLDLT 144 (151)
T ss_dssp HCSSSSSBCGG
T ss_pred CCCCCCCCCCC
T ss_conf 38150050677
No 7
>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=1.80 E-value=1.3e+02 Score=12.46 Aligned_cols=14 Identities=29% Similarity=0.653 Sum_probs=9.7
Q ss_pred EEEEECC-CCEEEEC
Q ss_conf 3322125-5303421
Q gi|254780908|r 17 RAVPIAN-TGAILEK 30 (35)
Q Consensus 17 ravpian-tgailek 30 (35)
-.+|+-| .+.||+|
T Consensus 44 ~~Ipl~~V~s~iL~k 58 (72)
T d1nexa2 44 IVMPVPNVRSSVLQK 58 (72)
T ss_dssp CEEECTTCCHHHHHH
T ss_pred CCCCCCCCCHHHHHH
T ss_conf 832079869899999
No 8
>d2e1ba1 b.43.3.6 (A:1-87) AlaX-M trans-editing enzyme, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}
Probab=1.51 E-value=2.5e+02 Score=11.24 Aligned_cols=15 Identities=20% Similarity=0.530 Sum_probs=8.7
Q ss_pred EEECCCCEEEECCCE
Q ss_conf 221255303421541
Q gi|254780908|r 19 VPIANTGAILEKSNF 33 (35)
Q Consensus 19 vpiantgaileksnf 33 (35)
.-+...+.+|+++.|
T Consensus 23 ~~i~~~~vild~T~F 37 (87)
T d2e1ba1 23 LEIRDNAILLDQTIF 37 (87)
T ss_dssp CCCCSSCCCBSCCCS
T ss_pred EEEECCEEEEECCCC
T ss_conf 999689999806510
No 9
>d2nn6c2 d.101.1.1 (C:188-276) Exosome complex exonuclease RRP43 {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.28 E-value=3.5e+02 Score=10.55 Aligned_cols=11 Identities=27% Similarity=0.486 Sum_probs=3.9
Q ss_pred EEEECCCCEEE
Q ss_conf 32212553034
Q gi|254780908|r 18 AVPIANTGAIL 28 (35)
Q Consensus 18 avpiantgail 28 (35)
..|++-|=+++
T Consensus 4 ~~Pi~vT~~~~ 14 (89)
T d2nn6c2 4 THPVATSFAVF 14 (89)
T ss_dssp CCCEEEEEEEC
T ss_pred CCEEEEEEEEE
T ss_conf 78799999999
No 10
>d2bida_ f.1.4.1 (A:) Proapoptotic molecule Bid {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.28 E-value=3.9e+02 Score=10.33 Aligned_cols=9 Identities=56% Similarity=0.645 Sum_probs=0.0
Q ss_pred ECCCCCCCE
Q ss_conf 458855201
Q gi|254780908|r 7 AGSDAESQE 15 (35)
Q Consensus 7 agsdaesqe 15 (35)
+.+|+||||
T Consensus 74 ~e~DsEsqE 82 (197)
T d2bida_ 74 IEADSESQE 82 (197)
T ss_dssp STTCCCSHH
T ss_pred CCCCHHHHH
T ss_conf 267635379
Done!