Query gi|254780909|ref|YP_003065322.1| hypothetical protein CLIBASIA_04040 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 159 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 13730 Date Wed Jun 1 10:31:58 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780909.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1zoqc1 a.153.1.1 (C:2065-2111 10.1 41 0.003 11.7 1.3 15 100-114 12-26 (47) 2 d1whqa_ d.50.1.1 (A:) ATP-depe 6.6 60 0.0043 10.8 3.9 38 59-104 58-95 (99) 3 d3cjsb1 d.47.1.1 (B:1-70) Ribo 5.0 74 0.0054 10.3 0.9 25 20-45 13-37 (70) 4 d2gycg2 d.47.1.1 (G:2-72) Ribo 4.6 78 0.0057 10.1 -0.0 19 21-40 13-31 (71) 5 d1m70a2 a.3.1.4 (A:93-190) Cyt 4.0 94 0.0068 9.6 1.4 10 34-43 6-15 (98) 6 d1uila_ d.50.1.1 (A:) ATP-depe 3.7 1E+02 0.0074 9.4 3.0 10 69-78 90-99 (113) 7 d1umqa_ a.4.1.12 (A:) Photosyn 3.3 1.2E+02 0.0085 9.1 2.5 18 31-48 13-30 (60) 8 d1mmsa2 d.47.1.1 (A:8-70) Ribo 3.1 1.2E+02 0.0091 8.9 1.4 25 20-45 7-31 (63) 9 d1o0wa2 d.50.1.1 (A:168-236) R 3.1 1.3E+02 0.0094 8.8 2.4 17 59-77 53-69 (69) 10 d1aqta1 a.2.10.1 (A:87-136) Ep 2.8 1.4E+02 0.01 8.6 2.5 15 63-77 5-19 (50) No 1 >d1zoqc1 a.153.1.1 (C:2065-2111) Nuclear receptor coactivator CBP/p300 ibid domain {Mouse (Mus musculus) [TaxId: 10090]} Probab=10.09 E-value=41 Score=11.72 Aligned_cols=15 Identities=47% Similarity=0.587 Sum_probs=10.7 Q ss_pred CCCHHHHHHHHHHHH Q ss_conf 840378999985331 Q gi|254780909|r 100 EPESQETQQQVINKT 114 (159) Q Consensus 100 epesqetqqqvinkt 114 (159) .|.|-+-||||.+-- T Consensus 12 sP~sP~QQqQvL~IL 26 (47) T d1zoqc1 12 SPSSPQQQQQVLNIL 26 (47) T ss_dssp SCCCHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHH T ss_conf 999879999999999 No 2 >d1whqa_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]} Probab=6.57 E-value=60 Score=10.80 Aligned_cols=38 Identities=26% Similarity=0.412 Sum_probs=19.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCHH Q ss_conf 9988999999999999987643217500000120753136784037 Q gi|254780909|r 59 RKAAEQAAEAAKKAAEKIIHKDKKKPKENQEVNEVPVAANIEPESQ 104 (159) Q Consensus 59 rkaaeqaaeaakkaaekiihkdkkkpkenqevnevpvaaniepesq 104 (159) +|.|||. ||+.+-+.+++..... ..++|...++.|.++ T Consensus 58 KK~AEq~--AA~~al~~L~~~~~~~------~~~~P~~~~~~~~~~ 95 (99) T d1whqa_ 58 KKDAQSN--AARDFVNYLVRINEVK------SEEVPAVGIVPPPSG 95 (99) T ss_dssp HHHHHHH--HHHHHHHHHHHHTSSC------TTTSCCCCCCCCCCC T ss_pred HHHHHHH--HHHHHHHHHHHCCCCC------HHHCCCCCCCCCCCC T ss_conf 8899999--9999999999859998------544888778899999 No 3 >d3cjsb1 d.47.1.1 (B:1-70) Ribosomal protein L11, N-terminal domain {Thermus thermophilus [TaxId: 274]} Probab=5.04 E-value=74 Score=10.26 Aligned_cols=25 Identities=32% Similarity=0.676 Sum_probs=17.4 Q ss_pred HCCCCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 30466889998706788865788888 Q gi|254780909|r 20 SCGQADPVAPPPPQTLAERGKALLDE 45 (159) Q Consensus 20 scgqadpvappppqtlaergkallde 45 (159) --|+|.| +||--+.|..+|--+.+- T Consensus 13 ~aG~A~P-~PPvGpaLG~~GiNi~~F 37 (70) T d3cjsb1 13 PAGKATP-APPVGPALGQHGANIMEF 37 (70) T ss_dssp ETTCCCS-STTHHHHHHTTTCCHHHH T ss_pred ECCCCCC-CCCCCCHHHHCCCCHHHH T ss_conf 2577789-999764254528679999 No 4 >d2gycg2 d.47.1.1 (G:2-72) Ribosomal protein L11, N-terminal domain {Escherichia coli [TaxId: 562]} Probab=4.55 E-value=78 Score=10.10 Aligned_cols=19 Identities=37% Similarity=0.775 Sum_probs=8.6 Q ss_pred CCCCCCCCCCCHHHHHHHHH Q ss_conf 04668899987067888657 Q gi|254780909|r 21 CGQADPVAPPPPQTLAERGK 40 (159) Q Consensus 21 cgqadpvappppqtlaergk 40 (159) .|+|.| +||--+.|..+|- T Consensus 13 aG~A~P-aPPvGpaLG~~Gi 31 (71) T d2gycg2 13 AGMANP-SPPVGPALGQQGV 31 (71) T ss_dssp TTCCCS-SSSTTTTTTSSSC T ss_pred CCCCCC-CCCCCCHHHHCCC T ss_conf 477789-9997643545386 No 5 >d1m70a2 a.3.1.4 (A:93-190) Cytochrome c4 {Pseudomonas stutzeri [TaxId: 316]} Probab=3.97 E-value=94 Score=9.65 Aligned_cols=10 Identities=40% Similarity=0.770 Sum_probs=5.2 Q ss_pred HHHHHHHHHH Q ss_conf 7888657888 Q gi|254780909|r 34 TLAERGKALL 43 (159) Q Consensus 34 tlaergkall 43 (159) .++++|+.|. T Consensus 6 a~~~~G~~l~ 15 (98) T d1m70a2 6 ALAKQGEKLF 15 (98) T ss_dssp HHHHHHHHHH T ss_pred HHHHHHHHHH T ss_conf 9999899999 No 6 >d1uila_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]} Probab=3.72 E-value=1e+02 Score=9.45 Aligned_cols=10 Identities=20% Similarity=0.311 Sum_probs=3.6 Q ss_pred HHHHHHHHHH Q ss_conf 9999999876 Q gi|254780909|r 69 AKKAAEKIIH 78 (159) Q Consensus 69 akkaaekiih 78 (159) |+++-+.+.| T Consensus 90 A~~~l~~L~~ 99 (113) T d1uila_ 90 ALSLVRQLYH 99 (113) T ss_dssp HHHHHHHHHH T ss_pred HHHHHHHHHH T ss_conf 9999999997 No 7 >d1umqa_ a.4.1.12 (A:) Photosynthetic apparatus regulatory protein PprA (RegA), DNA-binding domain {Rhodobacter sphaeroides [TaxId: 1063]} Probab=3.32 E-value=1.2e+02 Score=9.09 Aligned_cols=18 Identities=6% Similarity=0.017 Sum_probs=6.9 Q ss_pred CHHHHHHHHHHHHHHHHH Q ss_conf 706788865788888878 Q gi|254780909|r 31 PPQTLAERGKALLDEATQ 48 (159) Q Consensus 31 ppqtlaergkalldeatq 48 (159) .|.+|.+--+.++-.+-+ T Consensus 13 ~~~~l~~~Er~~I~~aL~ 30 (60) T d1umqa_ 13 NPMSADRVRWEHIQRIYE 30 (60) T ss_dssp SSSCHHHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHHH T ss_conf 998999999999999999 No 8 >d1mmsa2 d.47.1.1 (A:8-70) Ribosomal protein L11, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Probab=3.14 E-value=1.2e+02 Score=8.91 Aligned_cols=25 Identities=32% Similarity=0.659 Sum_probs=16.5 Q ss_pred HCCCCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 30466889998706788865788888 Q gi|254780909|r 20 SCGQADPVAPPPPQTLAERGKALLDE 45 (159) Q Consensus 20 scgqadpvappppqtlaergkallde 45 (159) .-|+|.| +||--+.|..+|--+.+- T Consensus 7 ~aG~A~p-~PPvGpaLG~~GiNi~~F 31 (63) T d1mmsa2 7 PAGKATP-APPVGPALGQHGVNIMEF 31 (63) T ss_dssp ETTCCCC-TTTTTHHHHTTTCCHHHH T ss_pred ECCCCCC-CCCCCCHHHHCCCCHHHH T ss_conf 5687789-999765021338688999 No 9 >d1o0wa2 d.50.1.1 (A:168-236) RNase III, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Probab=3.05 E-value=1.3e+02 Score=8.83 Aligned_cols=17 Identities=53% Similarity=0.686 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHHHHHHHHH Q ss_conf 9988999999999999987 Q gi|254780909|r 59 RKAAEQAAEAAKKAAEKII 77 (159) Q Consensus 59 rkaaeqaaeaakkaaekii 77 (159) +|.||| .||+.+-++|| T Consensus 53 KK~Aeq--~AA~~aL~~L~ 69 (69) T d1o0wa2 53 KKEAEK--EAARIAYEKLL 69 (69) T ss_dssp HHHHHH--HHHHHHHHHHC T ss_pred HHHHHH--HHHHHHHHHHC T ss_conf 999999--99999999869 No 10 >d1aqta1 a.2.10.1 (A:87-136) Epsilon subunit of F1F0-ATP synthase C-terminal domain {Escherichia coli [TaxId: 562]} Probab=2.81 E-value=1.4e+02 Score=8.58 Aligned_cols=15 Identities=47% Similarity=0.448 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHHHHH Q ss_conf 999999999999987 Q gi|254780909|r 63 EQAAEAAKKAAEKII 77 (159) Q Consensus 63 eqaaeaakkaaekii 77 (159) |..|+.||+.||..| T Consensus 5 earA~eAk~~AEe~l 19 (50) T d1aqta1 5 EARAMEAKRKAEEHI 19 (50) T ss_dssp HHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHH T ss_conf 999999999999998 Done!