RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780909|ref|YP_003065322.1| hypothetical protein
CLIBASIA_04040 [Candidatus Liberibacter asiaticus str. psy62]
(159 letters)
>gnl|CDD|38173 KOG2962, KOG2962, KOG2962, Prohibitin-related membrane protease
subunits [General function prediction only].
Length = 322
Score = 33.5 bits (76), Expect = 0.030
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 36 AERGKALLDEATQKAAEKAAEAARKAAEQAAEAAKKAAEKIIHKDKKKPKENQE-VNEVP 94
AE+ K L+ QK EK AE RK A AE + A KI+ + K KE ++ ++E+
Sbjct: 188 AEKTKLLIAAEKQKVVEKEAETERKKAVIEAEKNAQVA-KILMQQKLMEKETEKRISEIE 246
Query: 95 VAANIEPE 102
AA + E
Sbjct: 247 DAAFLARE 254
>gnl|CDD|48218 cd03406, Band_7_3, A subgroup of the band 7 domain of flotillin
(reggie) like proteins. This subgroup contains proteins
similar to stomatin, prohibitin, flotillin, HlfK/C and
podicin. Many of these band 7 domain-containing
proteins are lipid raft-associated. Individual proteins
of this band 7 domain family may cluster to form
membrane microdomains which may in turn recruit
multiprotein complexes. Microdomains formed from
flotillin proteins may in addition be dynamic units with
their own regulatory functions. Flotillins have been
implicated in signal transduction, vesicle trafficking,
cytoskeleton rearrangement and are known to interact
with a variety of proteins. Stomatin interacts with and
regulates members of the degenerin/epithelia Na+ channel
family in mechanosensory cells of Caenorhabditis elegans
and vertebrate neurons and participates in trafficking
of Glut1 glucose transporters. Prohibitin may act as a
chaperone for the stabilization of mitochondrial
proteins. Prokaryotic HflK/C plays a role in the
decision between lysogenic and lytic cycle growth during
lambda phage infection. Flotillins have been implicated
in the progression of prion disease, in the pathogenesis
of neurodegenerative diseases such as Parkinson's and
Alzheimer's disease and, in cancer invasion and
metastasis. Mutations in the podicin gene give rise to
autosomal recessive steroid resistant nephritic
syndrome..
Length = 280
Score = 31.5 bits (71), Expect = 0.096
Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
Query: 36 AERGKALLDEATQKAAEKAAEAARKAAEQAAEAAKKAAEKIIHKDKKKPKENQEVNEVPV 95
AE+ K L+ QK EK AE RK A AE + A+ + + + + + ++E+
Sbjct: 170 AEKTKLLIAIQKQKVVEKEAETERKKAVIEAEKVAQVAKILFGQKVMEKETEKRISEIED 229
Query: 96 AANIEPESQETQQQVINKTTTSQTDAEK 123
A + E + + T + +A K
Sbjct: 230 EAFLAREKAKADAEYY--TAQKEAEANK 255
>gnl|CDD|99960 cd03784, GT1_Gtf_like, This family includes the Gtfs, a group of
homologous glycosyltransferases involved in the final
stages of the biosynthesis of antibiotics vancomycin and
related chloroeremomycin. Gtfs transfer sugar moieties
from an activated NDP-sugar donor to the oxidatively
cross-linked heptapeptide core of vancomycin group
antibiotics. The core structure is important for the
bioactivity of the antibiotics..
Length = 401
Score = 30.0 bits (68), Expect = 0.32
Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 4/53 (7%)
Query: 27 VAPPPPQTLAER-GKALLDEATQKAAEKAAEAARKAAEQAAEAAKKAAEKIIH 78
A P + AER AL + +AA R+ E+ +A +I
Sbjct: 350 PALDPRELTAERLAAALRRLLDPPSRRRAAALLRRIREEDGVP---SAADVIE 399
>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein. This family
consists of several Borrelia P83/P100 antigen proteins.
Length = 489
Score = 28.4 bits (63), Expect = 0.86
Identities = 21/90 (23%), Positives = 38/90 (42%), Gaps = 10/90 (11%)
Query: 43 LDEATQKA--AEKAAEAARKAAEQAAEAAKKAAEKIIHKDKKKPKENQEVNEVPVAANIE 100
D+A QKA A+ A+ R Q + AK + D PKE+++V E N +
Sbjct: 229 ADKAQQKADFAQDNADKQRDEVRQKQQEAKNLPKP---ADTSSPKEDKQVAE-----NQK 280
Query: 101 PESQETQQQVINKTTTSQTDAEKTPNEKRQ 130
E ++ Q ++ + + + +Q
Sbjct: 281 REIEKAQIEIKKNDEEALKAKDHKAFDLKQ 310
Score = 26.5 bits (58), Expect = 3.5
Identities = 16/67 (23%), Positives = 28/67 (41%)
Query: 23 QADPVAPPPPQTLAERGKALLDEATQKAAEKAAEAARKAAEQAAEAAKKAAEKIIHKDKK 82
Q P P T + + + E ++ EKA +K E+A +A A + + K
Sbjct: 255 QEAKNLPKPADTSSPKEDKQVAENQKREIEKAQIEIKKNDEEALKAKDHKAFDLKQESKA 314
Query: 83 KPKENQE 89
KE ++
Sbjct: 315 SEKEAED 321
>gnl|CDD|34937 COG5373, COG5373, Predicted membrane protein [Function unknown].
Length = 931
Score = 27.6 bits (61), Expect = 1.8
Identities = 15/54 (27%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Query: 24 ADPVAPPPPQ-TLAERGKALLDEATQKAAEKAAEAARKAAEQAAEAAKKAAEKI 76
A P PPP A+ G+A E +A A + + AA A I
Sbjct: 73 ASPEVPPPVPPAPAQEGEAPAAEQPSAVPAPSAAPAPAEPVEPSLAANPFAAAI 126
>gnl|CDD|37551 KOG2340, KOG2340, KOG2340, Uncharacterized conserved protein
[Function unknown].
Length = 698
Score = 27.3 bits (60), Expect = 1.8
Identities = 24/118 (20%), Positives = 45/118 (38%), Gaps = 7/118 (5%)
Query: 37 ERGKALLDEATQKAAEKAAEAARKAAEQAAEAAKKAAEKIIHKDKKKPKENQEVNEVPVA 96
E K +D+ + + EK E RKA E A + E D+K+ E + E+P
Sbjct: 55 EGKKEKVDDKSDHSEEK--ERRRKAIESVNNAPAEVGE-----DEKENTEEDDQLEIPKR 107
Query: 97 ANIEPESQETQQQVINKTTTSQTDAEKTPNEKRQGTTDGINNQSNATNDPSSKDKIAE 154
ES + + +I K ++++ + + + I + T +K
Sbjct: 108 KLKNHESTDDDETLIEKKNDNESEDPFWSHFDDELGSKHIADLIARTKTTVKLEKSIL 165
>gnl|CDD|35434 KOG0213, KOG0213, KOG0213, Splicing factor 3b, subunit 1 [RNA
processing and modification].
Length = 1172
Score = 27.3 bits (60), Expect = 2.0
Identities = 26/143 (18%), Positives = 51/143 (35%), Gaps = 7/143 (4%)
Query: 12 SLLSTTMASCGQADPVAPPPPQTLAERGKALLDEATQKAAEKAAEAARKAAEQAAEAAKK 71
SLL+ + DP+A +T+A+R DE ++ ++ R A +
Sbjct: 74 SLLNEVARIEEEYDPMAEKRTKTIADRE----DEYHKRRRDRQISPDRVDAFADKTPDGR 129
Query: 72 AAEKII---HKDKKKPKENQEVNEVPVAANIEPESQETQQQVINKTTTSQTDAEKTPNEK 128
++ +K++ + +E+ E SQ ++ N T ++ T +E
Sbjct: 130 TYTDVMREQMLEKEEREVRRELAEKAKEGEEHSTSQPKKRLEANNTASAATPRRNRWDET 189
Query: 129 RQGTTDGINNQSNATNDPSSKDK 151
G T + D K
Sbjct: 190 PPGVTPVATRMEDKGEDTPRSTK 212
>gnl|CDD|30678 COG0330, HflC, Membrane protease subunits, stomatin/prohibitin
homologs [Posttranslational modification, protein
turnover, chaperones].
Length = 291
Score = 27.4 bits (60), Expect = 2.1
Identities = 16/65 (24%), Positives = 23/65 (35%)
Query: 36 AERGKALLDEATQKAAEKAAEAARKAAEQAAEAAKKAAEKIIHKDKKKPKENQEVNEVPV 95
+R + L E +AA AE +AA AEA +A + + E P
Sbjct: 188 DKRAEILEAEGEAQAAILRAEGEAEAAIILAEAEAEAEVIARAEADAAKIIAAALREAPA 247
Query: 96 AANIE 100
A
Sbjct: 248 APQAL 252
>gnl|CDD|29417 cd00830, KAS_III, Ketoacyl-acyl carrier protein synthase III
(KASIII) initiates the elongation in type II fatty acid
synthase systems. It is found in bacteria and plants.
Elongation of fatty acids in the type II systems occurs
by Claisen condensation of malonyl-acyl carrier protein
(ACP) with acyl-ACP. KASIII initiates this process by
specifically using acetyl-CoA over acyl-CoA..
Length = 320
Score = 27.1 bits (60), Expect = 2.2
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 52 EKAAEAARKAAEQAAEAAKKAAEKI 76
E ++ A +AA++A E A A+ I
Sbjct: 48 ETTSDLAVEAAKKALEDAGIDADDI 72
>gnl|CDD|147333 pfam05103, DivIVA, DivIVA protein. The Bacillus subtilis divIVA1
mutation causes misplacement of the septum during cell
division, resulting in the formation of small, circular,
anucleate mini-cells. Inactivation of divIVA produces a
mini-cell phenotype, whereas overproduction of DivIVA
results in a filamentation phenotype. These proteins
appear to contain coiled-coils.
Length = 131
Score = 27.2 bits (61), Expect = 2.3
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 46 ATQKAAEKAAEAARKAAEQAAEAAKKAAEKIIHKDKKKPKE 86
Q+ AE+ A+K AE + A+ AE+I++ ++ K+
Sbjct: 71 VAQETAEEVKANAQKEAELIIKEAEAKAERIVNDANEEAKK 111
>gnl|CDD|173868 cd08503, PBP2_NikA_DppA_OppA_like_17, The substrate-binding
component of an uncharacterized ABC-type
nickel/dipeptide/oligopeptide-like import system
contains the type 2 periplasmic binding fold. This CD
represents the substrate-binding domain of an
uncharacterized ATP-binding cassette (ABC) type
nickel/dipeptide/oligopeptide-like transporter. The
oligopeptide-binding protein OppA and the
dipeptide-binding protein DppA show significant sequence
similarity to NikA, the initial nickel receptor. The
DppA binds dipeptides and some tripeptides and is
involved in chemotaxis toward dipeptides, whereas the
OppA binds peptides of a wide range of lengths (2-35
amino acid residues) and plays a role in recycling of
cell wall peptides, which precludes any involvement in
chemotaxis. Most of other periplasmic binding proteins
are comprised of only two globular subdomains
corresponding to domains I and III of the
dipeptide/oligopeptide binding proteins. The structural
topology of these domains is most similar to that of the
type 2 periplasmic binding proteins (PBP2), which are
responsible for the uptake of a variety of substrates
such as phosphate, sulfate, polysaccharides,
lysine/arginine/ornithine, and histidine. The PBP2 bind
their ligand in the cleft between these domains in a
manner resembling a Venus flytrap. After binding their
specific ligand with high affinity, they can interact
with a cognate membrane transport complex comprised of
two integral membrane domains and two cytoplasmically
located ATPase domains. This interaction triggers the
ligand translocation across the cytoplasmic membrane
energized by ATP hydrolysis. Besides transport
proteins, the PBP2 superfamily includes the
ligand-binding domains from ionotropic glutamate
receptors, LysR-type transcriptional regulators, and
unorthodox sensor proteins involved in signal
transduction.
Length = 460
Score = 26.8 bits (60), Expect = 2.6
Identities = 24/61 (39%), Positives = 28/61 (45%), Gaps = 18/61 (29%)
Query: 26 PVAPPPPQTLA--------ERGKALLDEA----------TQKAAEKAAEAARKAAEQAAE 67
PVAP PP ++ KALL EA T AA A +AA AEQAA+
Sbjct: 289 PVAPIPPYYADLPQREYDPDKAKALLAEAGLPDLEVELVTSDAAPGAVDAAVLFAEQAAQ 348
Query: 68 A 68
A
Sbjct: 349 A 349
>gnl|CDD|144933 pfam01523, PmbA_TldD, Putative modulator of DNA gyrase. tldD and
pmbA were found to suppress mutations in letD and
inhibitor of DNA gyrase. Therefore it has been
hypothesized that the TldD and PmbA proteins modulate
the activity of DNA gyrase. It has also been suggested
that PmbA may be involved in secretion.
Length = 289
Score = 26.5 bits (59), Expect = 3.5
Identities = 14/45 (31%), Positives = 19/45 (42%)
Query: 56 EAARKAAEQAAEAAKKAAEKIIHKDKKKPKENQEVNEVPVAANIE 100
EA KA E+A AK + E P V+E P ++E
Sbjct: 54 EALEKAVERALALAKLSPEDPAGLPDPSPLPPVPVDEDPADLSLE 98
Score = 25.7 bits (57), Expect = 5.7
Identities = 11/46 (23%), Positives = 20/46 (43%)
Query: 44 DEATQKAAEKAAEAARKAAEQAAEAAKKAAEKIIHKDKKKPKENQE 89
+EA +KA E+A A+ + E A + + D+ + E
Sbjct: 53 EEALEKAVERALALAKLSPEDPAGLPDPSPLPPVPVDEDPADLSLE 98
>gnl|CDD|35385 KOG0163, KOG0163, KOG0163, Myosin class VI heavy chain
[Cytoskeleton].
Length = 1259
Score = 26.5 bits (58), Expect = 3.6
Identities = 23/116 (19%), Positives = 42/116 (36%), Gaps = 5/116 (4%)
Query: 33 QTLAERGKALLDEATQKAAEKAAEAARKAAEQAAEAAKKAAEKIIHKDKKKPKENQEVNE 92
Q LAE + + ++ E E +K A+ E +KA E+ + ++ +E + E
Sbjct: 930 QELAEAERKRREAEEKRRRE---EEEKKRAKAEMETKRKAEEE--QRKAQEEEERRLALE 984
Query: 93 VPVAANIEPESQETQQQVINKTTTSQTDAEKTPNEKRQGTTDGINNQSNATNDPSS 148
+ E E + +Q + + A + N D ND S
Sbjct: 985 LQEQLAKEAEEEAKRQNQLEQERRDHELALRLANSDGGQVEDSPPVIRALVNDASP 1040
>gnl|CDD|34036 COG4314, NosL, Predicted lipoprotein involved in nitrous oxide
reduction [Energy production and conversion].
Length = 176
Score = 26.1 bits (57), Expect = 4.1
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 1 MKRLKYQIILLSLLSTTMASCGQADPVAPPPPQTLAER 38
MKR I+ ++ L A C QA+ APP P+ + +R
Sbjct: 1 MKRTLLAILAVTALL---AGCRQAEDGAPPLPRQITDR 35
>gnl|CDD|145732 pfam02734, Dak2, DAK2 domain. This domain is the predicted
phosphatase domain of the dihydroxyacetone kinase
family.
Length = 175
Score = 26.4 bits (59), Expect = 4.1
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 11/54 (20%)
Query: 33 QTLAERGKA------LLD--EATQKAAEKAAEA---ARKAAEQAAEAAKKAAEK 75
+ + RGKA +LD +A E AAEA +A E A +AA+K AE
Sbjct: 84 EAIQARGKAKPGDKTMLDVLRPAAEALEAAAEAGKDLAEALEAAVKAAEKGAES 137
>gnl|CDD|32267 COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related
beta-hydroxyacid dehydrogenases [Lipid metabolism].
Length = 286
Score = 26.3 bits (58), Expect = 4.2
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 33 QTLAERGKALL--DEATQKAAEKAAEAARKAAEQAAEAAKKA 72
L + G + + +KAAE A A A AEAA +A
Sbjct: 17 ANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEA 58
>gnl|CDD|34211 COG4573, GatZ, Predicted tagatose 6-phosphate kinase [Carbohydrate
transport and metabolism].
Length = 426
Score = 26.1 bits (57), Expect = 4.9
Identities = 13/38 (34%), Positives = 15/38 (39%), Gaps = 5/38 (13%)
Query: 19 ASCGQADPVAPPPPQTLAERGKALLDEATQKAAEKAAE 56
AS A P +T+AER L AE AA
Sbjct: 128 ASMSCAGDPIPLDDETVAERAARLA-----AVAEAAAT 160
>gnl|CDD|32431 COG2250, COG2250, Uncharacterized conserved protein related to
C-terminal domain of eukaryotic chaperone, SACSIN
[Function unknown].
Length = 132
Score = 26.1 bits (57), Expect = 5.0
Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Query: 37 ERGKALLDEATQKAAEKAAEAARKAAEQAAEAAKKAAEKIIHKDKKKPKE 86
R + L A + + A A+QA E A KA +I + PK
Sbjct: 11 RRAERDLKLAKRDLELGDYDLACFHAQQAVELALKAL--LIRLGGEPPKT 58
>gnl|CDD|143437 cd07119, ALDH_BADH-GbsA, Bacillus subtilis NAD+-dependent betaine
aldehyde dehydrogenase-like. Included in this CD is
the NAD+-dependent, betaine aldehyde dehydrogenase
(BADH, GbsA, EC=1.2.1.8) of Bacillus subtilis involved
in the synthesis of the osmoprotectant glycine betaine
from choline or glycine betaine aldehyde.
Length = 482
Score = 25.7 bits (57), Expect = 5.9
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 41 ALLDEATQKAAEKAAEAARKAAEQAAEAAKKAAEK 75
A + E T + A++A AAR+A + A E+
Sbjct: 27 ATVPEGTAEDAKRAIAAARRAFDSGEWPHLPAQER 61
>gnl|CDD|145614 pfam02569, Pantoate_ligase, Pantoate-beta-alanine ligase.
Pantoate-beta-alanine ligase, also know as pantothenate
synthase, (EC:6.3.2.1) catalyses the formation of
pantothenate from pantoate and alanine.
Length = 280
Score = 25.8 bits (57), Expect = 6.0
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 46 ATQKAAEKAAEAARKAAEQAAEAAKKAAEKIIHK 79
Q+ A A KAA A +A ++ AE+II
Sbjct: 194 PEQRKIALALYKALKAAANAIQAGERDAEEIIDA 227
>gnl|CDD|36144 KOG0926, KOG0926, KOG0926, DEAH-box RNA helicase [RNA processing
and modification, Translation, ribosomal structure and
biogenesis].
Length = 1172
Score = 25.8 bits (56), Expect = 6.0
Identities = 26/144 (18%), Positives = 49/144 (34%), Gaps = 14/144 (9%)
Query: 29 PPPPQTLAERGKALLDEATQKAAEKAAEAARKAAEQAAEAAKKAAEKIIHK--------- 79
PP K D K E E ++K+ ++ + K E + K
Sbjct: 16 PPREDENKGEVKINPDGMNAKILENNNEESKKSRKRKLNSLVKEKECKLSKKKKKKLDAD 75
Query: 80 -DKKKPKENQEVNEVPVAANIEPESQETQQQVINKTTTSQTDAEKTPNEKRQG----TTD 134
+KK KE + +A + S + +V+ K+ T ++ ++ G T+
Sbjct: 76 IEKKLKKEERAELLAKLAESQIDTSLLSSSKVLGKSATKLEKLKEALQLEKAGVETETSA 135
Query: 135 GINNQSNATNDPSSKDKIAENTKE 158
+Q + D T+E
Sbjct: 136 ESTSQDDNPEDAIKSSMEEPETEE 159
>gnl|CDD|153388 cd07951, ED_3B_N_AMMECR1, The N-terminal domain, an extradiol
dioxygenase class III subunit B-like domain, of unknown
proteins containing a C-terminal AMMECR1 domain. This
subfamily is composed of uncharacterized proteins
containing an N-terminal domain with similarity to the
catalytic B subunit of class III extradiol dioxygenases
and a C-terminal AMMECR1-like domain. This model
represents the N-terminal domain. Class III extradiol
dioxygenases use a non-heme Fe(II) to cleave aromatic
rings between a hydroxylated carbon and an adjacent
non-hydroxylated carbon, however, proteins in this
subfamily do not contain a potential metal binding site
and may not exhibit class III extradiol
dioxygenase-like activity. The AMMECR1 protein was
proposed to be a regulatory factor that is potentially
involved in the development of AMME contiguous gene
deletion syndrome.
Length = 256
Score = 25.7 bits (57), Expect = 6.5
Identities = 9/30 (30%), Positives = 11/30 (36%), Gaps = 1/30 (3%)
Query: 49 KAAEKAAEAARKAAEQAA-EAAKKAAEKII 77
E A R A E AA A + I+
Sbjct: 14 GGEEAEIAATRAACEAAARRLAAARPDTIV 43
>gnl|CDD|37283 KOG2072, KOG2072, KOG2072, Translation initiation factor 3, subunit
a (eIF-3a) [Translation, ribosomal structure and
biogenesis].
Length = 988
Score = 25.7 bits (56), Expect = 6.5
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 37 ERGKALLDEATQKAAEKAAE-AARKAAEQAAEAAKKAAEKIIHKDKKKPKENQEVNEVPV 95
ER +A E ++ A + E A + E+AAE AK+ E+ +++ KE Q E
Sbjct: 798 ERKQAYYREIEEERARREEEEANAERQEEAAERAKRTEEEREIENRVAKKEKQRQRETEE 857
Query: 96 AANIEPE 102
E
Sbjct: 858 RERRINE 864
>gnl|CDD|143442 cd07124, ALDH_PutA-P5CDH-RocA, Delta(1)-pyrroline-5-carboxylate
dehydrogenase, RocA. Delta(1)-pyrroline-5-carboxylate
dehydrogenase (EC=1.5.1.12 ), RocA: a proline catabolic
enzyme of the aldehyde dehydrogenase (ALDH) protein
superfamily. The proline catabolic enzymes, proline
dehydrogenase and Delta(1)-pyrroline-5-carboxylate
dehydrogenase (P5CDH), catalyze the two-step oxidation
of proline to glutamate; P5CDH catalyzes the oxidation
of glutamate semialdehyde, utilizing NAD+ as the
electron acceptor. In some bacteria, the two enzymes are
fused into the bifunctional flavoenzyme, proline
utilization A (PutA). In this CD, monofunctional enzyme
sequences such as seen in the Bacillus subtilis RocA
P5CDH are also present. These enzymes play important
roles in cellular redox control, superoxide generation,
and apoptosis.
Length = 512
Score = 25.6 bits (57), Expect = 6.6
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 8/39 (20%)
Query: 46 ATQKAAEKAAEAARKA--------AEQAAEAAKKAAEKI 76
AT++ AE A +AAR A E+ A +AA +
Sbjct: 66 ATKEEAEAAVQAARAAFPTWRRTPPEERARLLLRAAALL 104
>gnl|CDD|37633 KOG2422, KOG2422, KOG2422, Uncharacterized conserved protein
[Function unknown].
Length = 665
Score = 25.4 bits (55), Expect = 6.6
Identities = 21/125 (16%), Positives = 50/125 (40%), Gaps = 4/125 (3%)
Query: 39 GKALLDEATQKAAEKAAEAARKAAEQAAEAAKKAAEKIIHKDKKKPKENQEVNEVPVAAN 98
+ L + Q++ + A +++ E + + E I++ K+ ++NE A
Sbjct: 6 LRRLRKDQRQESLLSLSNANDMESDEDTEESGQKRENIVNMFNNLRKDGGQMNEEDEEAA 65
Query: 99 IEPESQET---QQQVINKTTTSQTDAEKTPNEKRQGTTDGINNQSNATNDPSSKDKI-AE 154
I E E Q+ I + S + +K ++++ + ++ ++D +
Sbjct: 66 IAEERDEPSVGQESRITLASKSSKNKKKKKKKRKKKKSTAEVDKDEGSDDEQKLAILKYG 125
Query: 155 NTKED 159
TK D
Sbjct: 126 KTKND 130
>gnl|CDD|31386 COG1193, COG1193, Mismatch repair ATPase (MutS family) [DNA
replication, recombination, and repair].
Length = 753
Score = 25.3 bits (55), Expect = 7.5
Identities = 9/26 (34%), Positives = 10/26 (38%)
Query: 58 ARKAAEQAAEAAKKAAEKIIHKDKKK 83
A AE AK A + KKK
Sbjct: 559 AHMGLPVPAEEAKVEAVDEVKFLKKK 584
>gnl|CDD|37249 KOG2038, KOG2038, KOG2038, CAATT-binding transcription factor/60S
ribosomal subunit biogenesis protein [Translation,
ribosomal structure and biogenesis, Transcription].
Length = 988
Score = 25.4 bits (55), Expect = 7.6
Identities = 17/74 (22%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Query: 60 KAAEQAAEAAKKAAEKIIHKDKKKPKENQEVNEVPVA----ANIEPESQETQQQVINKTT 115
K +Q + AKK K + + K +EN+ ++ +A AN + + +T +
Sbjct: 49 KLKKQPMKLAKKDKPKQPEEKEGKAQENKLKEDLKIAKKIMANFDSGAVQTNNKKQAANL 108
Query: 116 TSQTDAEKTPNEKR 129
S+ E N+K+
Sbjct: 109 ASKPVDESPGNKKK 122
>gnl|CDD|31216 COG1012, PutA, NAD-dependent aldehyde dehydrogenases [Energy
production and conversion].
Length = 472
Score = 25.3 bits (55), Expect = 7.8
Identities = 10/57 (17%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Query: 25 DPVAPPPPQTLAERGKALLDEATQKAAEKAAEAARKAAEQAAEAAKKAAEKII-HKD 80
+P T+ +D A A +R +AE+ A ++ A+ + +
Sbjct: 20 NPATGEVIATVPAATAEDVDAAVAAARAAFEAWSRLSAEERAAILRRIADLLEARAE 76
>gnl|CDD|153369 cd07685, F-BAR_Fes, The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma)
tyrosine kinase. F-BAR domains are dimerization modules
that bind and bend membranes and are found in proteins
involved in membrane dynamics and actin reorganization.
Fes (feline sarcoma), also called Fps (Fujinami poultry
sarcoma), is a cytoplasmic (or nonreceptor) tyrosine
kinase whose gene was first isolated from tumor-causing
retroviruses. It is expressed in myeloid, vascular
endothelial, epithelial, and neuronal cells, and plays
important roles in cell growth and differentiation,
angiogenesis, inflammation and immunity, and
cytoskeletal regulation. Fes kinase has also been
implicated as a tumor suppressor in colorectal cancer.
It contains an N-terminal F-BAR domain, an SH2 domain,
and a C-terminal catalytic kinase domain. F-BAR domains
form banana-shaped dimers with a positively-charged
concave surface that binds to negatively-charged lipid
membranes. They can induce membrane deformation in the
form of long tubules. The F-BAR domain of Fes is
critical in its role in microtubule nucleation and
bundling.
Length = 237
Score = 24.9 bits (54), Expect = 9.0
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 47 TQKAAEKAAEAARKAAEQAAEAAKKAAEKIIHKDKKKPKE 86
TQ+ EK R A+ +A+A +K E KD+ K KE
Sbjct: 129 TQQDIEKLKSQYRSLAKDSAQAKRKYQEASKDKDRDKAKE 168
>gnl|CDD|29677 cd01915, CODH, Carbon monoxide dehydrogenase (CODH) is found in
acetogenic and methanogenic organisms and is responsible
for the synthesis and breakdown of acetyl-CoA,
respectively. CODH has two types of metal clusters, a
cubane [Fe4-S4] center (B-cluster) similar to that of
hybrid cluster protein (HCP) and a Ni-Fe-S center
(C-cluster) where carbon monoxide oxidation occurs.
Bifunctional CODH forms a heterotetramer with acetyl-CoA
synthase (ACS) consisting of two CODH and two ACS
subunits while monofunctional CODH forms a homodimer.
Bifunctional CODH reduces carbon dioxide to carbon
monoxide and ACS then synthesizes acetyl-CoA from carbon
monoxide, CoA, and a methyl group donated by another
protein (CoFeSP), while monofunctional CODH oxidizes
carbon monoxide to carbon dioxide. CODH and ACS each
have a metal cluster referred to as the C- and
A-clusters, respectively..
Length = 613
Score = 25.2 bits (55), Expect = 9.1
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 52 EKAAEAARKAAEQAAEAAKKAAEKIIHKDKKKPK 85
E+A E+A++ A EA K+ + ++ + K K
Sbjct: 362 EEADESAKEIIRMAIEAFKRRKKSKVYIPQHKSK 395
>gnl|CDD|38799 KOG3592, KOG3592, KOG3592, Microtubule-associated proteins
[Cytoskeleton].
Length = 934
Score = 25.1 bits (54), Expect = 9.6
Identities = 17/75 (22%), Positives = 26/75 (34%)
Query: 31 PPQTLAERGKALLDEATQKAAEKAAEAARKAAEQAAEAAKKAAEKIIHKDKKKPKENQEV 90
P T K + AEK ++ A+ A K A K K + K + V
Sbjct: 331 EPATRTAVPKKAPKPSKAAVAEKQPTEVKRPAKSAPALKKGAPAKPEDKKAEAIKPKKAV 390
Query: 91 NEVPVAANIEPESQE 105
+ A +PE +
Sbjct: 391 GKKQDGAPSKPEVKV 405
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.299 0.115 0.295
Gapped
Lambda K H
0.267 0.0533 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 1,576,410
Number of extensions: 68178
Number of successful extensions: 776
Number of sequences better than 10.0: 1
Number of HSP's gapped: 672
Number of HSP's successfully gapped: 233
Length of query: 159
Length of database: 6,263,737
Length adjustment: 86
Effective length of query: 73
Effective length of database: 4,405,363
Effective search space: 321591499
Effective search space used: 321591499
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.7 bits)
S2: 53 (24.6 bits)