RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780909|ref|YP_003065322.1| hypothetical protein CLIBASIA_04040 [Candidatus Liberibacter asiaticus str. psy62] (159 letters) >2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like fold, endoplasmic reticulum, glycosyltransferase, structural genomics; NMR {Saccharomyces cerevisiae} (A:) Length = 224 Score = 27.6 bits (60), Expect = 0.93 Identities = 0/33 (0%), Positives = 2/33 (6%), Gaps = 1/33 (3%) Query: 32 PQTLAERGKALL-DEATQKAAEKAAEAARKAAE 63 + + Sbjct: 191 LIAGLRASQTEKLKPFPVSHNPSFERLLVETIY 223 >3gwa_A 3-oxoacyl-(acyl-carrier-protein) synthase III; structural genomics, synthetase, transferase; 1.60A {Burkholderia pseudomallei 1710B} PDB: 3gwe_A (A:1-41,A:77-203) Length = 168 Score = 27.4 bits (60), Expect = 0.94 Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 3/44 (6%) Query: 22 GQADPVAPPPPQTLAERGKALLDEATQKAAEKAAEAARKAAEQA 65 G P A PP +A+ L E AA+ A EAARK Q Sbjct: 20 GSMTPAAHPPRAAIADIAGHLPRET---AADLAYEAARKLFAQG 60 >1rxt_A Myristoyl-, glycylpeptide N-tetradecanoyltransferase 1; alpha-beta structure, unique N-myristoyltransferase fold; 3.00A {Homo sapiens} (A:) Length = 496 Score = 27.3 bits (60), Expect = 1.1 Identities = 7/77 (9%), Positives = 25/77 (32%) Query: 51 AEKAAEAARKAAEQAAEAAKKAAEKIIHKDKKKPKENQEVNEVPVAANIEPESQETQQQV 110 A+++ A + A + + H + +E+ N ++ + +++ +++ Sbjct: 2 ADESETAVKPPAPPLPQMMEGNGNGHEHCSDCENEEDNSYNRGGLSPANDTGAKKKKKKQ 61 Query: 111 INKTTTSQTDAEKTPNE 127 K Sbjct: 62 KKKKEKGSETDSAQDQP 78 Score = 26.2 bits (57), Expect = 2.3 Identities = 8/65 (12%), Positives = 23/65 (35%) Query: 66 AEAAKKAAEKIIHKDKKKPKENQEVNEVPVAANIEPESQETQQQVINKTTTSQTDAEKTP 125 A+ ++ A + + + N +E E ++ + + T +K Sbjct: 2 ADESETAVKPPAPPLPQMMEGNGNGHEHCSDCENEEDNSYNRGGLSPANDTGAKKKKKKQ 61 Query: 126 NEKRQ 130 +K++ Sbjct: 62 KKKKE 66 >1t3q_B Quinoline 2-oxidoreductase large subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} (B:482-633) Length = 152 Score = 27.2 bits (60), Expect = 1.2 Identities = 10/47 (21%), Positives = 15/47 (31%) Query: 23 QADPVAPPPPQTLAERGKALLDEATQKAAEKAAEAARKAAEQAAEAA 69 A RG + + +AA E ++ A EAA Sbjct: 52 AGSTKNTYGFGAYASRGAVIGAGSIGRAASIVRERVKQLAGHLLEAA 98 >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynthesis, protein binding; 2.50A {Pseudomonas fluorescens} (A:1-157) Length = 157 Score = 26.9 bits (58), Expect = 1.5 Identities = 4/36 (11%), Positives = 6/36 (16%) Query: 29 PPPPQTLAERGKALLDEATQKAAEKAAEAARKAAEQ 64 TL L A + + Sbjct: 103 NGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAA 138 >1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} (A:218-390) Length = 173 Score = 26.2 bits (57), Expect = 2.1 Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 3/42 (7%) Query: 33 QTLAERGKALLDEATQKA---AEKAAEAARKAAEQAAEAAKK 71 + + L++ Q A AE A +A++ A + +K Sbjct: 131 GVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRK 172 >2pfy_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.95A {Bordetella pertussis tohama I} (A:1-121,A:205-259) Length = 176 Score = 26.0 bits (57), Expect = 2.3 Identities = 5/35 (14%), Positives = 14/35 (40%), Gaps = 1/35 (2%) Query: 43 LDEATQKAAEKAA-EAARKAAEQAAEAAKKAAEKI 76 L ++A A +A + + A ++ + + Sbjct: 138 LPAEVRQAVLDAGAKAEIRGWQTARAKTRELTDTL 172 >3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii} (a:) Length = 219 Score = 26.2 bits (57), Expect = 2.3 Identities = 12/62 (19%), Positives = 31/62 (50%) Query: 48 QKAAEKAAEAARKAAEQAAEAAKKAAEKIIHKDKKKPKENQEVNEVPVAANIEPESQETQ 107 ++ + A A + A E+ + + +I KD K E++E+ ++ + +P+ + T+ Sbjct: 153 EEGIKLALNALKSAMERDTFSGNGISLAVITKDGVKIFEDEEIEKILDSMKAKPKKKTTK 212 Query: 108 QQ 109 + Sbjct: 213 RS 214 >1vlb_A Aldehyde oxidoreductase; iron-sulphur cluster; HET: PCD; 1.28A {Desulfovibrio gigas} (A:628-749) Length = 122 Score = 25.9 bits (57), Expect = 2.6 Identities = 8/53 (15%), Positives = 15/53 (28%), Gaps = 2/53 (3%) Query: 34 TLAERGKALLDEATQKAAEKAAEAARKAAEQ--AAEAAKKAAEKIIHKDKKKP 84 + R + + A + A E +A K + K A + Sbjct: 68 SGGSRQQVMTGNAIRVACENLLKACEKPGGGYYTYDELKAADKPTKITGNWTA 120 >3fmz_A Retinol-binding protein 4; disease mutation, secreted, sensory transduction, transport, vision, vitamin A, transport protein; HET: 2T1; 2.90A {Homo sapiens} (A:) Length = 212 Score = 26.0 bits (56), Expect = 2.6 Identities = 2/34 (5%), Positives = 7/34 (20%) Query: 1 MKRLKYQIILLSLLSTTMASCGQADPVAPPPPQT 34 I + + + V+ + Sbjct: 9 HHHHHDYDIPTTENLYFQGAMERDCRVSSFRVKE 42 >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein structure initiative; 2.40A {Vibrio parahaemolyticus rimd 2210633} (A:63-273) Length = 211 Score = 25.9 bits (57), Expect = 2.7 Identities = 8/55 (14%), Positives = 13/55 (23%), Gaps = 4/55 (7%) Query: 22 GQADPVAPPPPQTLAERGKALLDEATQKAAEKAAEAARKAAEQAAEAAKKAAEKI 76 G A + L L + E + A Q E ++ Sbjct: 25 GAATAKVLGENEELT----KSLVSFNLSXVSQDYEQVSELALQIEELRQEKGFLA 75 >2go5_4 Ribosomal protein L23; SR, SRP, ribosome, translation/RNA complex; 7.40A {Triticum SP} PDB: 2j37_4 (4:) Length = 152 Score = 26.0 bits (57), Expect = 2.8 Identities = 10/33 (30%), Positives = 13/33 (39%) Query: 51 AEKAAEAARKAAEQAAEAAKKAAEKIIHKDKKK 83 A K A A + A+ A KA + K K Sbjct: 2 APKVAVAKKGDAKAQAAKVAKAVKSGSIKKTAK 34 >3k9d_A LMO1179 protein, aldehyde dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.00A {Listeria monocytogenes} (A:1-219,A:425-464) Length = 259 Score = 25.4 bits (54), Expect = 3.9 Identities = 7/35 (20%), Positives = 17/35 (48%) Query: 44 DEATQKAAEKAAEAARKAAEQAAEAAKKAAEKIIH 78 D + + E+A KA ++ A +++ + I+ Sbjct: 7 DLRSIQEVRNLIESANKAQKELAAMSQQQIDTIVK 41 >2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} (s:) Length = 156 Score = 25.2 bits (55), Expect = 4.0 Identities = 14/36 (38%), Positives = 19/36 (52%) Query: 49 KAAEKAAEAARKAAEQAAEAAKKAAEKIIHKDKKKP 84 KA ++A + A+ A AKKA K +H KKK Sbjct: 4 KAKKEAPAPPKAEAKAKALKAKKAVLKGVHSHKKKK 39 >1vpb_A Putative modulator of DNA gyrase; BT3649, structural genomics, JCSG, joint center for structural genomics, PSI; 1.75A {Bacteroides thetaiotaomicron vpi-5482} (A:1-236) Length = 236 Score = 25.0 bits (54), Expect = 4.7 Identities = 5/56 (8%), Positives = 15/56 (26%) Query: 45 EATQKAAEKAAEAARKAAEQAAEAAKKAAEKIIHKDKKKPKENQEVNEVPVAANIE 100 + + + ++ R A+ A + + + + IE Sbjct: 88 KELETFIKNGIDSTRYLAKDEARVLADPSRYYKGGKPDLKLYDAKFASLNPDDKIE 143 >3k1s_A PTS system, cellobiose-specific IIA component; all alpha protein, spectrin repeat-like, transferase, structural genomics; HET: MSE; 2.30A {Bacillus anthracis} (A:) Length = 109 Score = 25.0 bits (55), Expect = 4.9 Identities = 10/33 (30%), Positives = 16/33 (48%) Query: 40 KALLDEATQKAAEKAAEAARKAAEQAAEAAKKA 72 ++ EA Q A + A +A +A EA +A Sbjct: 23 RSFAXEALQFAKQGKXAEADEAXVKAKEAINEA 55 >2q8k_A Proliferation-associated protein 2G4; EBP1, PA2G4, methionine aminopeptidase, PITA-bread, transcription; 1.60A {Homo sapiens} PDB: 2v6c_A (A:1-245,A:313-401) Length = 334 Score = 24.9 bits (53), Expect = 5.2 Identities = 6/26 (23%), Positives = 11/26 (42%) Query: 49 KAAEKAAEAARKAAEQAAEAAKKAAE 74 K +KA++ A A +A + Sbjct: 309 KKKKKASKTAENATSGETLEENEAGD 334 >3b50_A Sialic acid-binding periplasmic protein SIAP; periplasmic binding protein, trap, sugar transport, transport, transport protein; HET: SLB; 1.40A {Haemophilus influenzae} PDB: 2cey_A 2cex_A (A:1-135,A:189-271) Length = 218 Score = 24.8 bits (54), Expect = 5.6 Identities = 9/35 (25%), Positives = 13/35 (37%), Gaps = 1/35 (2%) Query: 43 LDEATQKAAEKAA-EAARKAAEQAAEAAKKAAEKI 76 L E QK + AA AA+ + + K Sbjct: 173 LPEDLQKVVKDAAENAAKYHTKLFVDGEKDLVTFF 207 >2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} (A:) Length = 214 Score = 24.5 bits (53), Expect = 6.6 Identities = 7/57 (12%), Positives = 15/57 (26%), Gaps = 1/57 (1%) Query: 33 QTLAERGKALLDEATQKAAEKAAEAARKAAEQAAEAAKKAAEKIIHKDKKKPKENQE 89 A + QK + R A E + ++++ K + Sbjct: 104 IQDAIDMEKSQQALVQKRHYLF-DVQRNNIAMALEVTYRERLHRVYREVKNRLDYHI 159 >1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichiisubsp} (A:65-564) Length = 500 Score = 24.5 bits (53), Expect = 7.0 Identities = 9/49 (18%), Positives = 14/49 (28%) Query: 26 PVAPPPPQTLAERGKALLDEATQKAAEKAAEAARKAAEQAAEAAKKAAE 74 V T+ KA L + + + +AA AA Sbjct: 414 DVLKVDNSTVLAEQKAKLVKLRAERDPEKVKAALDKITWAAGNPDDKDP 462 >2zkr_b 60S ribosomal protein L3; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} (b:1-82,b:209-403) Length = 277 Score = 24.5 bits (53), Expect = 7.0 Identities = 7/27 (25%), Positives = 7/27 (25%), Gaps = 1/27 (3%) Query: 44 DEATQKAAEKAA-EAARKAAEQAAEAA 69 Q EK A K A E Sbjct: 250 HGRFQTVEEKKAFMGPLKKDRIAKEEG 276 >2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural genomics, NPPSFA; 2.50A {Thermus thermophilus HB8} (A:1-195,A:283-337) Length = 250 Score = 24.2 bits (52), Expect = 8.0 Identities = 6/29 (20%), Positives = 13/29 (44%) Query: 40 KALLDEATQKAAEKAAEAARKAAEQAAEA 68 + +A + A++A A+ E+ E Sbjct: 209 PDYVMDALLEGAKRARAVAQATMEEVREK 237 >2vpn_A Periplasmic substrate binding protein; ectoine, hydroxyectoine, trap-transporter, periplasmic binding protein, transport; HET: 4CS; 1.55A {Halomonas elongata} PDB: 2vpo_A* (A:1-123,A:206-262) Length = 180 Score = 24.1 bits (52), Expect = 9.9 Identities = 8/35 (22%), Positives = 18/35 (51%) Query: 40 KALLDEATQKAAEKAAEAARKAAEQAAEAAKKAAE 74 + L+ +A A + E + +E++ E K A++ Sbjct: 146 QQLVQDAADAAYDHTIEHIKGLSEESLEKIKAASD 180 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.299 0.115 0.295 Gapped Lambda K H 0.267 0.0677 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 1,003,125 Number of extensions: 39230 Number of successful extensions: 460 Number of sequences better than 10.0: 1 Number of HSP's gapped: 428 Number of HSP's successfully gapped: 146 Length of query: 159 Length of database: 4,956,049 Length adjustment: 82 Effective length of query: 77 Effective length of database: 2,184,039 Effective search space: 168171003 Effective search space used: 168171003 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 43 (21.7 bits) S2: 51 (23.5 bits)