RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780909|ref|YP_003065322.1| hypothetical protein
CLIBASIA_04040 [Candidatus Liberibacter asiaticus str. psy62]
         (159 letters)



>3gdb_A Endo-D, putative uncharacterized protein SPR0440;
           alpha-beta-barrels, cell WALL, peptidoglycan-anchor,
           secreted, hydrolase; HET: PGE; 1.87A {Streptococcus
           pneumoniae}
          Length = 937

 Score = 31.7 bits (71), Expect = 0.071
 Identities = 20/110 (18%), Positives = 43/110 (39%), Gaps = 9/110 (8%)

Query: 45  EATQKAAEKAAEAARKAAEQAAEAAKKAAEKIIHKDKKKPKENQEVNEVPVAANIEPESQ 104
           E   + AE  A A+  A+  + EAA     +     K + K ++ V E   +A  +P+S 
Sbjct: 59  ENKLEKAEGVATASETASPASNEAATTETAEAASAAKPEEKASEVVAE-TPSAEAKPKSD 117

Query: 105 ETQQQVINKTTTSQTDAEKTPNEKRQGTTDGINNQSNATNDPSSKDKIAE 154
           +  +        ++ +A    +E +         +    + P + +K  +
Sbjct: 118 KETE--------AKPEATNQGDESKPAAEANKTEKEVQPDVPKNTEKTLK 159



 Score = 26.7 bits (58), Expect = 2.4
 Identities = 17/87 (19%), Positives = 33/87 (37%), Gaps = 7/87 (8%)

Query: 24  ADPVAPPPPQTLAERGKALLDE---ATQKAAEKAAEAARKAAEQAAEAAKKAAEKIIHKD 80
           A P +     T      +       A++  AE  +  A+  +++  EA  +A  +    D
Sbjct: 75  ASPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQ---GD 131

Query: 81  KKKPKENQEVNEVPVAANIEPESQETQ 107
           + KP       E  V  ++ P++ E  
Sbjct: 132 ESKPAAEANKTEKEVQPDV-PKNTEKT 157


>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin,
           teicoplanin, ORF1, natural products, antibiotic; HET:
           UDP; 1.15A {Amycolatopsis orientalis} PDB: 3h4i_A*
           1pn3_A* 1pnv_A*
          Length = 404

 Score = 31.0 bits (69), Expect = 0.14
 Identities = 7/46 (15%), Positives = 15/46 (32%), Gaps = 6/46 (13%)

Query: 32  PQTLAERGKALLDEATQKAAEKAAEAARKAAEQAAEAAKKAAEKII 77
            ++L+      L    +  A   A   R       +    AA+ ++
Sbjct: 339 VESLSAALATALTPGIRARAAAVAGTIR------TDGTTVAAKLLL 378


>3etf_A Putative succinate-semialdehyde dehydrogenase; center for
          structural genomics of infectious diseases,
          oxidoreductase, csgid; 1.85A {Salmonella typhimurium}
          PDB: 3efv_A
          Length = 462

 Score = 30.3 bits (67), Expect = 0.21
 Identities = 16/68 (23%), Positives = 23/68 (33%), Gaps = 13/68 (19%)

Query: 17 TMASCGQADPVAPPPPQTLAERGKALLDEATQKAAEKAAEAARKA--------AEQAAEA 68
          TM +  QA  V P   QTLA      +  A  +  E A   A             Q A+ 
Sbjct: 2  TMMTATQALSVNPATGQTLAA-----MPWANAQEIEHALSLAASGFKKWKMTSVAQRAQT 56

Query: 69 AKKAAEKI 76
           +   + +
Sbjct: 57 LRDIGQAL 64


>3k9d_A LMO1179 protein, aldehyde dehydrogenase; structural genomics,
          PSI-2, protein structure initiative; 2.00A {Listeria
          monocytogenes}
          Length = 464

 Score = 30.0 bits (66), Expect = 0.22
 Identities = 12/72 (16%), Positives = 23/72 (31%), Gaps = 18/72 (25%)

Query: 44 DEATQKAAEKAAEAARKA--------AEQAAEAAKKAAE----------KIIHKDKKKPK 85
          D  + +      E+A KA         +Q     K  A+          K+ H++     
Sbjct: 7  DLRSIQEVRNLIESANKAQKELAAMSQQQIDTIVKAIADAGYGAREKLAKMAHEETGFGI 66

Query: 86 ENQEVNEVPVAA 97
             +V +   A+
Sbjct: 67 WQDKVIKNVFAS 78


>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH,
           membrane fusion, trafficking, transmembrane, membrane
           protein; 3.20A {Pyrococcus horikoshii}
          Length = 188

 Score = 29.8 bits (66), Expect = 0.27
 Identities = 14/50 (28%), Positives = 22/50 (44%)

Query: 28  APPPPQTLAERGKALLDEATQKAAEKAAEAARKAAEQAAEAAKKAAEKII 77
              P        +    E  ++A    AEA R+AAE+  EAA+  +E  +
Sbjct: 112 VELPAGMQKAMARQAEAERERRARITLAEAERQAAEKLREAAEIISEHPM 161


>3b4w_A Aldehyde dehydrogenase; RV0223C-NAD complex, structural genomics,
          PSI-2, protein structure initiative; HET: NAD GOL;
          1.80A {Mycobacterium tuberculosis H37RV}
          Length = 495

 Score = 29.7 bits (66), Expect = 0.28
 Identities = 10/47 (21%), Positives = 16/47 (34%), Gaps = 2/47 (4%)

Query: 45 EATQKAAEKAAEAARKAAEQAAEAAKKAAE--KIIHKDKKKPKENQE 89
           A     + A  AAR A +     +    E   +I    K   E ++
Sbjct: 42 MAAAADVDAAVAAARAAFDNGPWPSTPPHERAAVIAAAVKMLAERKD 88



 Score = 25.9 bits (56), Expect = 4.7
 Identities = 9/30 (30%), Positives = 13/30 (43%)

Query: 46 ATQKAAEKAAEAARKAAEQAAEAAKKAAEK 75
          AT +   K   AA    + A  AA+ A + 
Sbjct: 32 ATGEYVGKVPMAAAADVDAAVAAARAAFDN 61


>2rag_A Dipeptidase; aminohydrolase, structural genomics, NYSGXRC, target
          9257A, PSI-2, protein structure initiative; 2.00A
          {Caulobacter crescentus CB15}
          Length = 417

 Score = 29.7 bits (66), Expect = 0.32
 Identities = 11/45 (24%), Positives = 21/45 (46%)

Query: 2  KRLKYQIILLSLLSTTMASCGQADPVAPPPPQTLAERGKALLDEA 46
          + L + +  LSL + ++A          P P  +++  KAL D+ 
Sbjct: 3  RPLLFALTALSLTAASLAHAADKKAADKPAPSAVSKADKALHDKF 47


>1rrv_A Glycosyltransferase GTFD; GT-B, rossmann fold; HET: DVV TYD; 2.00A
           {Amycolatopsis orientalis} SCOP: c.87.1.5
          Length = 416

 Score = 29.6 bits (65), Expect = 0.34
 Identities = 9/49 (18%), Positives = 14/49 (28%), Gaps = 8/49 (16%)

Query: 32  PQTLAERGKALLDEATQKAAEKAAEAAR--------KAAEQAAEAAKKA 72
            ++L+     +L   T+  AE  A                 A    K A
Sbjct: 357 FESLSAALTTVLAPETRARAEAVAGMVLTDGXXXXXDLVLAAVGREKPA 405


>2o2p_A Formyltetrahydrofolate dehydrogenase; aldehyde dehydrogenase, FDH,
           oxidoreductase; 1.70A {Rattus norvegicus} PDB: 2o2q_A*
           2o2r_A*
          Length = 517

 Score = 28.9 bits (64), Expect = 0.51
 Identities = 8/37 (21%), Positives = 17/37 (45%), Gaps = 2/37 (5%)

Query: 45  EATQKAAEKAAEAARKAAEQAAEAAKKAAE--KIIHK 79
            A     +KA  AA++A E        A +  +++++
Sbjct: 70  LAQVSDVDKAVAAAKEAFENGLWGKINARDRGRLLYR 106



 Score = 25.8 bits (56), Expect = 4.5
 Identities = 7/30 (23%), Positives = 12/30 (40%)

Query: 46 ATQKAAEKAAEAARKAAEQAAEAAKKAAEK 75
                 + + A     ++A  AAK+A E 
Sbjct: 60 TDGSVICQVSLAQVSDVDKAVAAAKEAFEN 89


>1un8_A Dihydroxyacetone kinase; glycerone kinase, DHA kinase; HET: MYY;
           2.5A {Citrobacter freundii} SCOP: a.208.1.1 c.119.1.2
           PDB: 1un9_A*
          Length = 552

 Score = 29.1 bits (65), Expect = 0.53
 Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 4/47 (8%)

Query: 33  QTLAERGKALLDEAT----QKAAEKAAEAARKAAEQAAEAAKKAAEK 75
             +   G A   + T     + A  +  A  K  + A +AA+  AE+
Sbjct: 462 AQMKFYGGADEGDRTMIDALQPALTSLLAQPKNLQAAFDAAQAGAER 508


>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
           vesicle, membrane, Ca structural protein; 7.94A {Bos
           taurus}
          Length = 190

 Score = 28.7 bits (63), Expect = 0.66
 Identities = 25/102 (24%), Positives = 39/102 (38%), Gaps = 25/102 (24%)

Query: 22  GQADPVAPPPPQTLAERGKALLDEATQKAAEKAAEAARKAAEQA-AEAAKKAAEKIIHKD 80
            QAD +   P     E  +   +E  ++  E   +AA K  EQ   E AKK  E+     
Sbjct: 75  AQADRLTQEP-----ESIRKWREEQRKRLQE--LDAASKVMEQEWREKAKKDLEEW---- 123

Query: 81  KKKPKENQEVNEVPVAANIEPESQETQQQVINKTTTSQTDAE 122
                 NQ  +E       + E  +   ++ +K    Q DA+
Sbjct: 124 ------NQRQSE-------QVEKNKINNRIADKAFYQQPDAD 152


>1uxt_A Glyceraldehyde-3-phosphate dehydrogenase (NADP+); GAPN, ALDH,
          glucose 1-phosphate, glycolysis, regulation, catatysis,
          oxidoreductase; HET: G1P NAD; 2.2A {Thermoproteus
          tenax} SCOP: c.82.1.1 PDB: 1uxp_A* 1uxq_A* 1uxr_A*
          1uxn_A* 1uxu_A* 1uxv_A* 1ky8_A*
          Length = 501

 Score = 28.4 bits (62), Expect = 0.73
 Identities = 6/41 (14%), Positives = 14/41 (34%), Gaps = 9/41 (21%)

Query: 45 EATQKAAEKAAEAARKAAEQA---------AEAAKKAAEKI 76
            +++  E+  +   K    +             +KAA+ I
Sbjct: 50 SPSREEVERTLDVLFKRGRWSARDMPGTERLAVLRKAADII 90



 Score = 28.0 bits (61), Expect = 0.98
 Identities = 4/29 (13%), Positives = 8/29 (27%)

Query: 46 ATQKAAEKAAEAARKAAEQAAEAAKKAAE 74
                 K    +R+  E+  +   K   
Sbjct: 40 IDLATIAKVISPSREEVERTLDVLFKRGR 68


>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unknown function; HET:
           FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5
           d.87.1.1
          Length = 499

 Score = 28.1 bits (61), Expect = 0.85
 Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 7/40 (17%)

Query: 55  AEAARKAAEQAAE-------AAKKAAEKIIHKDKKKPKEN 87
           + +  +AA +          AA+ AAE++       P  N
Sbjct: 454 SGSITEAARRLMAHDDLDCTAAQDAAEQLALVPHHLPTSN 493


>2nq5_A 5-methyltetrahydropteroyltriglutamate-- homocysteine
           methyltransferase; structural genomics, target 6426D,
           PSI; 1.90A {Streptococcus mutans}
          Length = 755

 Score = 28.4 bits (63), Expect = 0.85
 Identities = 11/75 (14%), Positives = 25/75 (33%), Gaps = 2/75 (2%)

Query: 40  KALLDEATQKAAEKA--AEAARKAAEQAAEAAKKAAEKIIHKDKKKPKENQEVNEVPVAA 97
           +  L  A +K  E    AE      + A +      + +   D +  K            
Sbjct: 339 RNGLAFADEKLTEVKRLAEHLDGREDPAYDLHIAHFDALQAADFRNVKLEDLSRVATKRP 398

Query: 98  NIEPESQETQQQVIN 112
           +   + ++ QQ+ ++
Sbjct: 399 SDFAKRRDIQQEKLH 413


>3ed6_A Betaine aldehyde dehydrogenase; structural genomics, infectious
           deseases, NAD, oxidoreductase, PSI, protein structure
           initiative; 1.70A {Staphylococcus aureus} PDB: 3fg0_A*
          Length = 520

 Score = 28.1 bits (62), Expect = 0.89
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 45  EATQKAAEKAAEAARKAAEQAAEAAKKAAE--KIIHKDKKKPKENQE 89
           E T++ AE+A  AAR+A E    + + A    K +     K KE++E
Sbjct: 66  EGTKEDAERAILAARRAFESGEWSQETAETRGKKVRAIADKIKEHRE 112



 Score = 25.0 bits (54), Expect = 7.7
 Identities = 9/32 (28%), Positives = 18/32 (56%)

Query: 43 LDEATQKAAEKAAEAARKAAEQAAEAAKKAAE 74
          ++   Q+     +E  ++ AE+A  AA++A E
Sbjct: 53 INPYNQEVIFTVSEGTKEDAERAILAARRAFE 84


>3p0r_A Azoreductase; structural genomics, center for structural genomics
           of infec diseases, csgid, oxidoreductase; 1.80A
           {Bacillus anthracis}
          Length = 211

 Score = 28.1 bits (62), Expect = 0.97
 Identities = 9/27 (33%), Positives = 13/27 (48%)

Query: 45  EATQKAAEKAAEAARKAAEQAAEAAKK 71
           E   +  +KA E      E+AA+ A K
Sbjct: 184 EGHNQFPDKAEEIITAGLEEAAKVANK 210


>3ju8_A Succinylglutamic semialdehyde dehydrogenase; alpha-beta
          structure, structural genomics, PSI-2, protein
          structure initiative; HET: NAD; 1.82A {Pseudomonas
          aeruginosa}
          Length = 490

 Score = 27.7 bits (60), Expect = 1.2
 Identities = 10/40 (25%), Positives = 15/40 (37%), Gaps = 8/40 (20%)

Query: 45 EATQKAAEKAAEAARKA--------AEQAAEAAKKAAEKI 76
           A     + A  AAR+A         EQ  E  ++ A  +
Sbjct: 38 GADATQVDAAVCAAREAFPAWARRPLEQRIELLERFAATL 77



 Score = 27.7 bits (60), Expect = 1.4
 Identities = 8/33 (24%), Positives = 11/33 (33%)

Query: 43 LDEATQKAAEKAAEAARKAAEQAAEAAKKAAEK 75
          LD   Q        A     + A  AA++A   
Sbjct: 25 LDPVGQGVVWSGRGADATQVDAAVCAAREAFPA 57


>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism,
           cysteine biosynthesis, transferase; HET: LLP; 1.80A
           {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A*
          Length = 313

 Score = 27.9 bits (61), Expect = 1.2
 Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 11/54 (20%)

Query: 40  KALLDEATQKAAEKAAEAARKAAEQ-----------AAEAAKKAAEKIIHKDKK 82
           + L+DE      E A   AR+ A +           A  AA + A +  +  K 
Sbjct: 237 QDLVDEIITVGNEDALNVARRLAREEGLLVGISSGAATVAALQVARRPENAGKL 290


>2p6p_A Glycosyl transferase; GT-B family, X-RAY-diffraction,urdamycina-
           biosynthesis; 1.88A {Streptomyces fradiae}
          Length = 384

 Score = 27.4 bits (59), Expect = 1.4
 Identities = 5/45 (11%), Positives = 16/45 (35%), Gaps = 3/45 (6%)

Query: 32  PQTLAERGKALL-DEATQKAAEKAAE--AARKAAEQAAEAAKKAA 73
            + +A+  + L   +   + A+  +   +          A ++ A
Sbjct: 334 TEAIADSCQELQAKDTYARRAQDLSREISGMPLPATVVTALEQLA 378


>2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION transport,
           CF(0), stator, transport, acetylation, hydrogen ION
           transport; 2.8A {Bos taurus} SCOP: f.52.1.1
          Length = 214

 Score = 27.5 bits (61), Expect = 1.4
 Identities = 13/82 (15%), Positives = 29/82 (35%), Gaps = 1/82 (1%)

Query: 33  QTLAERGKALLDEATQKAAEKAAEAARKAAEQAAEAAKKAAEKIIH-KDKKKPKENQEVN 91
           Q L ++   L D      A       R+   +     K   +  I  ++  + KE + + 
Sbjct: 115 QALVQKRHYLFDVQRNNIAMALEVTYRERLHRVYREVKNRLDYHISVQNMMRQKEQEHMI 174

Query: 92  EVPVAANIEPESQETQQQVINK 113
                  ++  S + +++ I K
Sbjct: 175 NWVEKRVVQSISAQQEKETIAK 196


>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif,
           amino acid binding, ligase; 2.08A {Aquifex aeolicus}
           SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A
           1ygb_A 3htz_A
          Length = 465

 Score = 27.4 bits (60), Expect = 1.7
 Identities = 12/48 (25%), Positives = 18/48 (37%)

Query: 35  LAERGKALLDEATQKAAEKAAEAARKAAEQAAEAAKKAAEKIIHKDKK 82
             E+G  +  E  Q   E+  E ARK  +  A+  K     +    K 
Sbjct: 402 AREKGLGIDLEGFQCELEEQRERARKHFKVEAKKVKPVYSHLKELGKT 449


>3h4z_A Maltose-binding periplasmic protein fused with Al DERP7; MBP
           fusion, AHA1/BPI domain-like, super roll, sugar T
           transport, allergen; HET: GLC; 2.35A {Escherichia coli}
           PDB: 1mg1_A*
          Length = 568

 Score = 27.3 bits (60), Expect = 1.7
 Identities = 13/74 (17%), Positives = 26/74 (35%), Gaps = 4/74 (5%)

Query: 43  LDEATQKAA--EKAAEAARKAAEQAAEAAKKAAEKIIHKDKKKPKENQEVNEVPVAANIE 100
           +  A   AA   +  +AA  AA+  A A     +KI   ++     ++ V  +  +   +
Sbjct: 343 VRTAVINAASGRQTVDAALAAAQTNAAADPIHYDKIT--EEINKAVDEAVAAIEKSETFD 400

Query: 101 PESQETQQQVINKT 114
           P           + 
Sbjct: 401 PMKVPDHSDKFERH 414


>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
           acid synthase, acyl-carrier-protein, beta-ketoacyl
           reductase, beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 1688

 Score = 27.1 bits (59), Expect = 1.8
 Identities = 10/28 (35%), Positives = 18/28 (64%), Gaps = 2/28 (7%)

Query: 84  PKENQEVNEVPVAANIEP--ESQETQQQ 109
           P++ + + EV V  ++EP   S+ET +Q
Sbjct: 917 PEKKEMIQEVIVEEDLEPFEASKETAEQ 944


>1t90_A MMSDH, probable methylmalonate-semialdehyde dehydrogenase;
           oxidoreductase, NAD; HET: NAD; 2.50A {Bacillus subtilis}
          Length = 486

 Score = 27.1 bits (59), Expect = 1.8
 Identities = 16/115 (13%), Positives = 33/115 (28%), Gaps = 18/115 (15%)

Query: 45  EATQKAAEKAAEAARKA--------AEQAAEAAKKAAE----------KIIHKDKKKPKE 86
            +T++  + AA+ A +A          + A       +           +I  +  K  +
Sbjct: 39  ISTKEDIDYAAQTAAEAFKTWSKVAVPRRARILFNFQQLLSQHKEELAHLITIENGKNTK 98

Query: 87  NQEVNEVPVAANIEPESQETQQQVINKTTTSQTDAEKTPNEKRQGTTDGINNQSN 141
                      N+E  +      + +   +  TD E        G   GI   + 
Sbjct: 99  EALGEVGRGIENVEFAAGAPSLMMGDSLASIATDVEAANYRYPIGVVGGIAPFNF 153


>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
           methyltransferase, guanylyltransferase, zinc finger,
           icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
           PDB: 2cse_V
          Length = 1275

 Score = 26.9 bits (59), Expect = 1.9
 Identities = 30/136 (22%), Positives = 55/136 (40%), Gaps = 14/136 (10%)

Query: 23  QADPVAPPPPQTLAERGKALLDEATQKAAEKAAEAARKAAEQAAEAAKKAAEKIIHKDKK 82
           +A P    P  +  E+ +A    A+ + A ++AE   K  ++               DKK
Sbjct: 37  KAGPATTEPGTSNREQYRARPGIASVQRATESAELPMKNNDEGT------------PDKK 84

Query: 83  KPKENQEVNEVPVAANIEPESQETQQQVINKTTTSQTDAEKTPNEKRQGTTDG-INNQSN 141
                  VNE   A +   E+ + Q +  +K+    T ++   N   + +  G ++N+  
Sbjct: 85  GNTRGDLVNEHSEAKDEADEATQKQAKDTDKSKAQVTYSDTGINNANELSRSGNVDNEGG 144

Query: 142 ATNDPSSKDKIAENTK 157
           +   P S  +IAE T 
Sbjct: 145 SNQKPMS-TRIAEATS 159


>1lbv_A Fbpase/impase, fructose 1,6-bisphosphatase/inositol
          monophosphatase; dual activity, archaeal phosphatase,
          APO- form, hydrolase; 1.80A {Archaeoglobus fulgidus}
          SCOP: e.7.1.1 PDB: 1lbw_A 1lbx_A* 1lby_A* 1lbz_A*
          Length = 252

 Score = 27.1 bits (59), Expect = 1.9
 Identities = 8/47 (17%), Positives = 14/47 (29%)

Query: 52 EKAAEAARKAAEQAAEAAKKAAEKIIHKDKKKPKENQEVNEVPVAAN 98
            A   +R+ A +  +A      +   KD    K+          A 
Sbjct: 4  RDALRISREIAGEVRKAIASMPLRERVKDVGMGKDGTPTKAADRVAE 50


>1wnd_A Putative betaine aldehyde dehydrogenase; NADH, fluorescence,
          kinetics, oxidoreductase; 2.10A {Escherichia coli K12}
          SCOP: c.82.1.1 PDB: 1wnb_A
          Length = 495

 Score = 27.1 bits (59), Expect = 2.1
 Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 8/40 (20%)

Query: 45 EATQKAAEKAAEAARKA--------AEQAAEAAKKAAEKI 76
          EA+ +  + A  AA  A         +  AE   K A+ I
Sbjct: 56 EASAEQVDAAVRAADAAFAEWGQTTPKVRAECLLKLADVI 95



 Score = 25.9 bits (56), Expect = 4.0
 Identities = 9/30 (30%), Positives = 14/30 (46%)

Query: 46 ATQKAAEKAAEAARKAAEQAAEAAKKAAEK 75
          AT     + AEA+ +  + A  AA  A  +
Sbjct: 46 ATGDVLLEIAEASAEQVDAAVRAADAAFAE 75


>2gh9_A Maltose/maltodextrin-binding protein; MBP, maltose binding protein,
           thermophilic protein, periplasmic binding protein; HET:
           MLR; 1.95A {Thermus thermophilus HB27}
          Length = 386

 Score = 26.8 bits (57), Expect = 2.4
 Identities = 5/35 (14%), Positives = 10/35 (28%)

Query: 45  EATQKAAEKAAEAARKAAEQAAEAAKKAAEKIIHK 79
                A   A +      ++  E      +K I +
Sbjct: 346 GPWGNAISLAIQRPDSNVKKIVEDMVAEIKKAIGR 380


>1inp_A Inositol polyphosphate 1-phosphatase; hydrolase(phosphoric
          monoester); 2.30A {Bos taurus} SCOP: e.7.1.1
          Length = 400

 Score = 26.9 bits (58), Expect = 2.5
 Identities = 11/35 (31%), Positives = 15/35 (42%)

Query: 49 KAAEKAAEAARKAAEQAAEAAKKAAEKIIHKDKKK 83
          + +EKAA  AR   +Q         EK   +  KK
Sbjct: 10 RVSEKAANIARACRQQETLFQLLIEEKKEGEKNKK 44


>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase,
           ketoacid dehydrogenase, branched-chain, multi- enzyme
           complex, acylation; HET: TDP; 1.39A {Homo sapiens} SCOP:
           c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A*
           1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A*
           2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A*
           1x7z_A* ...
          Length = 400

 Score = 26.8 bits (58), Expect = 2.5
 Identities = 10/41 (24%), Positives = 16/41 (39%)

Query: 40  KALLDEATQKAAEKAAEAARKAAEQAAEAAKKAAEKIIHKD 80
           +   DE  +KA  K +      A + AE   K    ++  D
Sbjct: 326 QGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPNPNLLFSD 366


>2j6l_A Aldehyde dehydrogenase family 7 member A1; NAD, reductase,
          oxidoreductase, lysine catabolism; HET: NAI; 1.3A {Homo
          sapiens} PDB: 2jg7_A*
          Length = 500

 Score = 26.4 bits (57), Expect = 2.8
 Identities = 7/40 (17%), Positives = 17/40 (42%), Gaps = 8/40 (20%)

Query: 45 EATQKAAEKAAEAARKA--------AEQAAEAAKKAAEKI 76
          +A+    E+  + AR+A        A +  E  ++  + +
Sbjct: 55 QASVADYEETVKKAREAWKIWADIPAPKRGEIVRQIGDAL 94


>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP-
           binding, DNA-binding; 2.50A {Geobacillus
           stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB:
           1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C*
           2pjr_B*
          Length = 724

 Score = 26.4 bits (57), Expect = 2.8
 Identities = 12/55 (21%), Positives = 24/55 (43%)

Query: 25  DPVAPPPPQTLAERGKALLDEATQKAAEKAAEAARKAAEQAAEAAKKAAEKIIHK 79
           +    PP + L E    LL+ A+++ A  +  A  +     A  + K  ++  H+
Sbjct: 628 NIQMDPPSRFLNEIPAHLLETASRRQAGASRPAVSRPQASGAVGSWKVGDRANHR 682


>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PSI, protein
           structure initiative, southeast collaboratory for
           structural genomics; HET: FMN; 2.00A {Enterococcus
           faecalis}
          Length = 208

 Score = 26.4 bits (57), Expect = 3.0
 Identities = 7/27 (25%), Positives = 10/27 (37%)

Query: 45  EATQKAAEKAAEAARKAAEQAAEAAKK 71
           E      ++A E    A  +A E  K 
Sbjct: 181 EGIDHFPDRAEELLNTAMTKATEYGKT 207


>3k2w_A Betaine-aldehyde dehydrogenase; structural genomics, PSI-2,
          protein structure initiative; 1.90A {Pseudoalteromonas
          atlantica T6C}
          Length = 497

 Score = 26.2 bits (57), Expect = 3.0
 Identities = 10/40 (25%), Positives = 13/40 (32%), Gaps = 8/40 (20%)

Query: 45 EATQKAAEKAAEAARKA--------AEQAAEAAKKAAEKI 76
             +  AE A E A+ A        A       +  A KI
Sbjct: 46 AGCKADAENALEVAQAAQKAWAKLTARTRQNMLRTFANKI 85



 Score = 25.5 bits (55), Expect = 6.3
 Identities = 9/33 (27%), Positives = 14/33 (42%)

Query: 43 LDEATQKAAEKAAEAARKAAEQAAEAAKKAAEK 75
          L  +T K   +     +  AE A E A+ A + 
Sbjct: 33 LSPSTGKVIGEIPAGCKADAENALEVAQAAQKA 65


>3euo_A Type III pentaketide synthase; alpha helix, acyltransferase,
          transferase; 1.75A {Neurospora crassa} PDB: 3eut_A*
          3euq_A*
          Length = 379

 Score = 26.5 bits (57), Expect = 3.1
 Identities = 11/41 (26%), Positives = 16/41 (39%)

Query: 25 DPVAPPPPQTLAERGKALLDEATQKAAEKAAEAARKAAEQA 65
          +P  P   +      K L +         A EA+RKA  +A
Sbjct: 56 NPDHPLVNKPNPPTVKELHEVFMSDGVPLAVEASRKAMAEA 96


>2p4f_A Similar to SP|P32453 saccharomyces cerevisiae YNL315C ATP11; half
           barrel, chaperone; HET: P6G; 1.40A {Candida glabrata cbs
           138}
          Length = 299

 Score = 26.5 bits (58), Expect = 3.1
 Identities = 14/95 (14%), Positives = 29/95 (30%), Gaps = 5/95 (5%)

Query: 34  TLAERGKALLDEATQKAAEKAAEAARKAAEQAAEAAKKAAEKIIHKDKKKPKENQEVNEV 93
           +  +R K  L +  +    ++ E  +K      E  KK   KI    + +   N      
Sbjct: 12  SGEDRYKEKLLQKAKAEGVESIEELKKRLADQIEEKKKELNKIDPLRELEQHLNAGSRIH 71

Query: 94  PVAANIEPESQETQQQVINKTTTSQTDAEKTPNEK 128
                   E + T+    +   +     +  P + 
Sbjct: 72  T-----NKEHKTTKMSNKSNEKSGNVLPKDKPYKT 101


>1khc_A DNA cytosine-5 methyltransferase 3B2; five beta-sheets barrel
           followed by five-helix bundle; HET: DNA; 1.80A {Mus
           musculus} SCOP: b.34.9.2 PDB: 3flg_A*
          Length = 147

 Score = 26.5 bits (58), Expect = 3.1
 Identities = 10/45 (22%), Positives = 15/45 (33%)

Query: 44  DEATQKAAEKAAEAARKAAEQAAEAAKKAAEKIIHKDKKKPKENQ 88
            +    A      + RKA     E A+  A K       +  E+Q
Sbjct: 73  SQHFNLATFNKLVSYRKAMYHTLEKARVRAGKTFSSSPGESLEDQ 117


>1uzb_A 1-pyrroline-5-carboxylate dehydrogenase; oxidoreductase, riken
          structural genomics/proteomics initiative, RSGI,
          structural genomics; 1.4A {Thermus thermophilus} SCOP:
          c.82.1.1 PDB: 2eiw_A 2bhq_A* 2bhp_A* 2bja_A* 2bjk_A*
          2ehq_A* 2ehu_A* 2eii_A* 2eit_A* 2ej6_A 2ejd_A* 2ejl_A
          2iy6_A* 2j40_A* 2j5n_A*
          Length = 516

 Score = 26.4 bits (57), Expect = 3.1
 Identities = 11/30 (36%), Positives = 15/30 (50%)

Query: 46 ATQKAAEKAAEAARKAAEQAAEAAKKAAEK 75
          A  +     A+A +  AE A EAA KA + 
Sbjct: 60 APSEVVGTTAKAGKAEAEAALEAAWKAFKT 89



 Score = 26.0 bits (56), Expect = 4.3
 Identities = 10/45 (22%), Positives = 21/45 (46%)

Query: 45  EATQKAAEKAAEAARKAAEQAAEAAKKAAEKIIHKDKKKPKENQE 89
           +A +  AE A EAA KA +   +  ++   +++ K     +  + 
Sbjct: 70  KAGKAEAEAALEAAWKAFKTWKDWPQEDRSRLLLKAAALMRRRKR 114


>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding,
           aminoacyl-tRNA synthetase, ligase, nucleotide-binding;
           HET: TRP; 2.42A {Cryptosporidium parvum iowa II}
          Length = 393

 Score = 26.2 bits (57), Expect = 3.2
 Identities = 6/24 (25%), Positives = 11/24 (45%)

Query: 37  ERGKALLDEATQKAAEKAAEAARK 60
           +  +A+ D+   K   K+ E   K
Sbjct: 364 KNREAINDDVIAKFTNKSREQLLK 387


>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription
           regulator, activator, DNA-binding, repressor; HET: SAL;
           2.30A {Salmonella typhimurium} SCOP: a.4.5.28
          Length = 166

 Score = 26.4 bits (58), Expect = 3.2
 Identities = 9/45 (20%), Positives = 17/45 (37%)

Query: 34  TLAERGKALLDEATQKAAEKAAEAARKAAEQAAEAAKKAAEKIIH 78
            L E+ + L+ E  +   +   E     + +  E   K   K+ H
Sbjct: 113 KLTEKAEPLIAEMEEVIHKTRGEILAGISSEEIELLIKLIAKLEH 157


>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural
           genomics, joint center for structural genomics, JCSG;
           HET: MSE; 2.30A {Thermotoga maritima MSB8} SCOP:
           c.14.1.4 c.14.1.4
          Length = 527

 Score = 26.2 bits (57), Expect = 3.5
 Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 14/88 (15%)

Query: 51  AEKAAEAARKAAEQAAEAAKKAAEKIIHKDKKKPKENQEVNEVPVAAN------IEPESQ 104
            E AA    K   +A+   ++   K+I +      + Q  N    A+       I+P   
Sbjct: 445 PEGAANIIFKREIEASSNPEETRRKLIEE-----YKQQFANPYIAASRGYVDMVIDPR-- 497

Query: 105 ETQQQVINKTTTSQTDAEKTPNEKRQGT 132
           ET++ ++      +T  E  P +K+ G 
Sbjct: 498 ETRKYIMRALEVCETKVEYRP-KKKHGN 524


>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase,
           protease, threonine protease; 4.10A {Methanocaldococcus
           jannaschii}
          Length = 219

 Score = 26.2 bits (57), Expect = 3.7
 Identities = 12/62 (19%), Positives = 31/62 (50%)

Query: 48  QKAAEKAAEAARKAAEQAAEAAKKAAEKIIHKDKKKPKENQEVNEVPVAANIEPESQETQ 107
           ++  + A  A + A E+   +    +  +I KD  K  E++E+ ++  +   +P+ + T+
Sbjct: 153 EEGIKLALNALKSAMERDTFSGNGISLAVITKDGVKIFEDEEIEKILDSMKAKPKKKTTK 212

Query: 108 QQ 109
           + 
Sbjct: 213 RS 214


>2g40_A Conserved hypothetical protein; 6459694, structural genomics,
          PSI, protein structure initiative, joint center for
          structural genomics; 1.70A {Deinococcus radiodurans}
          SCOP: c.124.1.7
          Length = 224

 Score = 26.0 bits (57), Expect = 3.9
 Identities = 10/54 (18%), Positives = 16/54 (29%)

Query: 22 GQADPVAPPPPQTLAERGKALLDEATQKAAEKAAEAARKAAEQAAEAAKKAAEK 75
          G      PP P         +L +   +  +  A     +A +   A  KA   
Sbjct: 36 GSRPEALPPYPVPAPLSRAEILHQFEDRILDYGAAYTHVSAAELPGAIAKALGN 89


>1bxs_A Aldehyde dehydrogenase; retinal, class 1, tetramer, NAD,
          cytosolic, oxidoreductase; HET: NAD; 2.35A {Ovis aries}
          SCOP: c.82.1.1 PDB: 1o9j_A* 1bi9_A*
          Length = 501

 Score = 26.2 bits (57), Expect = 3.9
 Identities = 8/31 (25%), Positives = 16/31 (51%)

Query: 45 EATQKAAEKAAEAARKAAEQAAEAAKKAAEK 75
          E  ++  +KA +AAR+A +  +      A +
Sbjct: 54 EGDKEDVDKAVKAARQAFQIGSPWRTMDASE 84



 Score = 24.6 bits (53), Expect = 9.3
 Identities = 8/45 (17%), Positives = 20/45 (44%)

Query: 46 ATQKAAEKAAEAARKAAEQAAEAAKKAAEKIIHKDKKKPKENQEV 90
          AT++   +  E  ++  ++A +AA++A +           E   +
Sbjct: 44 ATEEKLCEVEEGDKEDVDKAVKAARQAFQIGSPWRTMDASERGRL 88


>2nn6_A Polymyositis/scleroderma autoantigen 1; RNA, exosome, PM/SCL,
           phosphorolytic, hydrolase/transferase complex; 3.35A
           {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
          Length = 358

 Score = 25.9 bits (56), Expect = 4.1
 Identities = 10/49 (20%), Positives = 17/49 (34%), Gaps = 4/49 (8%)

Query: 52  EKAAEAARKAAEQAAEAAKKAAEKIIHKDKKKPKENQEVNEVPVAANIE 100
            + ++ A     +  E   KA    +  D+K  KE  +       AN  
Sbjct: 265 LRCSKIAGVKVAEITELILKA----LENDQKVRKEGGKFGFAESIANQR 309


>3fpw_A HBPS, extracellular HAEM-binding protein; heme binding protein;
          1.60A {Streptomyces reticuli} PDB: 3fpv_A
          Length = 192

 Score = 26.0 bits (57), Expect = 4.4
 Identities = 18/63 (28%), Positives = 24/63 (38%), Gaps = 2/63 (3%)

Query: 9  ILLSLLSTTMASCGQADPVAPPPPQTLAERGKALLDEATQKAAEKAAEAARKAAEQAAEA 68
           L  L +  + +   A   A     T A    A       ++     EAA KAA  A EA
Sbjct: 23 ALAVLGAGVVGTV--AANAADTTEATPAAAPVAARGGELTQSTHLTLEAATKAARAAVEA 80

Query: 69 AKK 71
          A+K
Sbjct: 81 AEK 83


>1o20_A Gamma-glutamyl phosphate reductase; TM0293, structural genomics,
          JCSG, PSI, protein structure initiative; 2.00A
          {Thermotoga maritima} SCOP: c.82.1.1
          Length = 427

 Score = 25.9 bits (56), Expect = 4.7
 Identities = 13/55 (23%), Positives = 19/55 (34%), Gaps = 10/55 (18%)

Query: 43 LDEATQKAAEKAAEAARKAAEQAAEAAKKAAEKI----------IHKDKKKPKEN 87
          L E  +K  E           +  +A KK AEK+             D +K +E 
Sbjct: 16 LLEKAKKVREAWDVLRNATTREKNKAIKKIAEKLDERRKEILEANRIDVEKARER 70


>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator,
           APC5857, structural genomics, PSI, protein structure
           initiative; 1.80A {Pseudomonas aeruginosa} SCOP:
           a.4.5.28
          Length = 146

 Score = 25.8 bits (56), Expect = 4.7
 Identities = 6/50 (12%), Positives = 16/50 (32%)

Query: 34  TLAERGKALLDEATQKAAEKAAEAARKAAEQAAEAAKKAAEKIIHKDKKK 83
            L  +   L+ +    AA    +      E      ++   +I+   + +
Sbjct: 97  VLTPKADVLIADIEAIAASVRNDVLTGIDESEQALCQQVLLRILANLENR 146


>1a4s_A ALDH, betaine aldehyde dehydrogenase; oxidoreductase, aldehyde
          oxidation; 2.10A {Gadus callarias} SCOP: c.82.1.1 PDB:
          1bpw_A*
          Length = 503

 Score = 25.8 bits (56), Expect = 5.0
 Identities = 7/30 (23%), Positives = 14/30 (46%)

Query: 46 ATQKAAEKAAEAARKAAEQAAEAAKKAAEK 75
          AT +   +      +  +QA ++A+ A  K
Sbjct: 44 ATGRVLCQMVPCGAEEVDQAVQSAQAAYLK 73



 Score = 25.8 bits (56), Expect = 5.0
 Identities = 6/40 (15%), Positives = 15/40 (37%), Gaps = 8/40 (20%)

Query: 45 EATQKAAEKAAEAARKA--------AEQAAEAAKKAAEKI 76
              +  ++A ++A+ A          + +    +AA  I
Sbjct: 54 PCGAEEVDQAVQSAQAAYLKWSKMAGIERSRVMLEAARII 93


>2w8n_A Succinate-semialdehyde dehydrogenase, mitochondrial;
          mitochondrion, oxidoreductase, transit peptide, disease
          mutation, SSA, NAD, ssadh; 2.00A {Homo sapiens} PDB:
          2w8o_A 2w8p_A 2w8q_A 2w8r_A*
          Length = 487

 Score = 25.8 bits (56), Expect = 5.0
 Identities = 7/40 (17%), Positives = 15/40 (37%), Gaps = 8/40 (20%)

Query: 45 EATQKAAEKAAEAARKA--------AEQAAEAAKKAAEKI 76
          +   + A  A  AA +A        A++ +   +K    +
Sbjct: 44 DCGVREARAAVRAAYEAFCRWREVSAKERSSLLRKWYNLM 83



 Score = 25.0 bits (54), Expect = 7.0
 Identities = 8/30 (26%), Positives = 13/30 (43%)

Query: 46 ATQKAAEKAAEAARKAAEQAAEAAKKAAEK 75
          A+  A    A+   + A  A  AA +A  +
Sbjct: 34 ASGAALGMVADCGVREARAAVRAAYEAFCR 63


>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like,
           oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
          Length = 414

 Score = 25.5 bits (55), Expect = 5.1
 Identities = 9/63 (14%), Positives = 18/63 (28%), Gaps = 8/63 (12%)

Query: 13  LLSTTMASCGQADPVAPPPPQTLAERGKALLDEATQKAAEKAAEAARKAAEQAAEAAKKA 72
            +   +    +AD         +  +      E   + A     A     ++A    +K 
Sbjct: 359 DIVAELRDGCKADVYDEKG---ITFKFN--YTEELLEQAY---NAGVDLGKRAIAYCEKN 410

Query: 73  AEK 75
           A K
Sbjct: 411 APK 413


>1oah_A Cytochrome C nitrite reductase; nitrogen cycle, respiratory nitrite
           ammonification; HET: HEM; 2.3A {Desulfovibrio
           desulfuricans} SCOP: a.138.1.3
          Length = 519

 Score = 25.8 bits (56), Expect = 5.2
 Identities = 11/58 (18%), Positives = 20/58 (34%)

Query: 53  KAAEAARKAAEQAAEAAKKAAEKIIHKDKKKPKENQEVNEVPVAANIEPESQETQQQV 110
            + E ++KA + A EA        +  D KK           +  + E   Q    ++
Sbjct: 445 TSMECSQKAVDLATEATDFGIAPALAGDIKKLVPPILTLSRKLQQDPEFLKQNPWTRL 502


>2imp_A Lactaldehyde dehydrogenase; protein-lactate-NADH ternary complex,
          oxidoreductase; HET: NAI; 2.10A {Escherichia coli} PDB:
          2ilu_A* 2hg2_A* 2opx_A*
          Length = 479

 Score = 25.5 bits (55), Expect = 5.2
 Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 8/40 (20%)

Query: 45 EATQKAAEKAAEAARKA--------AEQAAEAAKKAAEKI 76
          +   + A KA +AA +A        A + A   +K +  I
Sbjct: 40 DGQAEDARKAIDAAERAQPEWEALPAIERASWLRKISAGI 79



 Score = 25.5 bits (55), Expect = 5.9
 Identities = 7/30 (23%), Positives = 16/30 (53%)

Query: 46 ATQKAAEKAAEAARKAAEQAAEAAKKAAEK 75
          AT+    +  +   + A +A +AA++A  +
Sbjct: 30 ATEAVISRIPDGQAEDARKAIDAAERAQPE 59


>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}
           SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
          Length = 336

 Score = 25.5 bits (55), Expect = 5.3
 Identities = 14/84 (16%), Positives = 30/84 (35%), Gaps = 4/84 (4%)

Query: 40  KALLDEATQKAAEKAAEAARKAAEQAAEAAKKAAEKIIHKDKKKPKENQEVNEVPVAANI 99
           K L      KAA+      ++   +     KK    +     ++  E +   +   ++  
Sbjct: 255 KVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF----ERLAEEENKAKAEASSGD 310

Query: 100 EPESQETQQQVINKTTTSQTDAEK 123
            P   E +++  + T  SQ+  E 
Sbjct: 311 HPTDTEMKEEQKSNTAGSQSQVET 334


>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic
           protein; HIV, antiviral protein; 2.80A {Escherichia
           coli}
          Length = 471

 Score = 25.5 bits (55), Expect = 5.3
 Identities = 18/89 (20%), Positives = 29/89 (32%), Gaps = 3/89 (3%)

Query: 43  LDEATQKAA--EKAAEAARKAAEQAAEAAKKAAEKIIHKDKKKPKENQEVNEVPVAANIE 100
           +  A   AA   +  + A K A+    AA+     ++          QE+ E        
Sbjct: 357 VRTAVINAASGRQTVDEALKDAQTRITAARDGLRAVMEARNVTHLLQQELTEAQKGFQDV 416

Query: 101 PESQETQQQVINKTTTSQTDAEKTPNEKR 129
                T    +     S  DAEK   +K+
Sbjct: 417 EAQAATANHTVMALMAS-LDAEKAQGQKK 444


>3jz4_A Succinate-semialdehyde dehydrogenase [NADP+]; tetramer, NADP
          binding, oxidoreductase; HET: NAP; 2.30A {Escherichia
          coli}
          Length = 481

 Score = 25.8 bits (57), Expect = 5.3
 Identities = 8/45 (17%), Positives = 17/45 (37%), Gaps = 9/45 (20%)

Query: 45 EATQKAAEKAAEAARKA--------AEQAAEAAKKAAEKII-HKD 80
          +        A +AA +A        A++ A   +     ++ H+D
Sbjct: 43 KMGADETRAAIDAANRALPAWRALTAKERATILRNWFNLMMEHQD 87


>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase,
           structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma
           pneumoniae M129}
          Length = 348

 Score = 25.6 bits (55), Expect = 5.3
 Identities = 8/49 (16%), Positives = 14/49 (28%)

Query: 35  LAERGKALLDEATQKAAEKAAEAARKAAEQAAEAAKKAAEKIIHKDKKK 83
           L E    LL    +K  + + E      +     A+  A   +      
Sbjct: 291 LTEATVNLLVNIQRKREQISREQVFNCLQAGKNQAQATARTTLALFYDG 339


>2b3f_A Glucose-binding protein; protein-carbohydrate complex, periplasmic
           binding protein, galactose, GBP, sugar binding protein;
           HET: GAL; 1.56A {Thermus thermophilus HB27} PDB: 2b3b_A*
          Length = 400

 Score = 25.5 bits (54), Expect = 5.4
 Identities = 10/47 (21%), Positives = 18/47 (38%)

Query: 22  GQADPVAPPPPQTLAERGKALLDEATQKAAEKAAEAARKAAEQAAEA 68
           G     A  P   +++ G  +      +  + AA AA+  A+Q    
Sbjct: 344 GSLVHGAVAPESFMSQFGTVMEIFLQTRNPQAAANAAQAIADQVGLG 390


>3lo7_A PBPA, penicillin-binding protein A; transpeptidase domain, cell
           membrane, cell shape, cell WALL biogenesis/degradation,
           membrane; 2.05A {Mycobacterium tuberculosis}
          Length = 483

 Score = 25.5 bits (55), Expect = 5.5
 Identities = 4/24 (16%), Positives = 9/24 (37%)

Query: 43  LDEATQKAAEKAAEAARKAAEQAA 66
           ++   Q+A   A +       + A
Sbjct: 130 INPRIQQAGWDAMQQGCYGPCKGA 153


>3crj_A Transcription regulator; APC88200, TETR, structural genomics,
          PSI-2, protein structure initiative; HET: MSE; 2.60A
          {Haloarcula marismortui atcc 43049}
          Length = 199

 Score = 25.6 bits (55), Expect = 5.6
 Identities = 5/44 (11%), Positives = 20/44 (45%), Gaps = 2/44 (4%)

Query: 24 ADPVAPPPPQTLAERGKALLDEATQKAAEKAAEAA--RKAAEQA 65
          ++ +A P  +T +++ + ++    +   E        ++ A++ 
Sbjct: 1  SNAMAGPSDRTFSDQTEEIMQATYRALREHGYADLTIQRIADEY 44


>3ifg_A Succinate-semialdehyde dehydrogenase (NADP+); niaid,.infectious
          disease, ssgcid; 2.70A {Burkholderia pseudomallei
          1710B} PDB: 3ifh_Q
          Length = 484

 Score = 25.5 bits (55), Expect = 5.6
 Identities = 7/40 (17%), Positives = 16/40 (40%), Gaps = 8/40 (20%)

Query: 45 EATQKAAEKAAEAARKA--------AEQAAEAAKKAAEKI 76
          +       +A EAA+ A        A++ A   ++  + +
Sbjct: 46 KMGAAETARAIEAAQAAWAGWRMKTAKERAAILRRWFDLV 85



 Score = 24.7 bits (53), Expect = 8.8
 Identities = 8/33 (24%), Positives = 13/33 (39%)

Query: 43 LDEATQKAAEKAAEAARKAAEQAAEAAKKAAEK 75
           D AT ++     +       +A EAA+ A   
Sbjct: 33 FDPATGESLGTVPKMGAAETARAIEAAQAAWAG 65


>1o04_A Aldehyde dehydrogenase, mitochondrial precursor; ALDH, NAD, NADH,
          isomerization, oxidoreductase; HET: NAD; 1.42A {Homo
          sapiens} SCOP: c.82.1.1 PDB: 1nzw_A* 3inl_A* 3inj_A*
          1nzz_A* 1o00_A* 1nzx_A* 1o01_A* 1o05_A 1of7_A* 1o02_A*
          1zum_A 2onm_A* 2onp_A* 2onn_A 2ono_A* 2vle_A* 1cw3_A*
          1ag8_A 1a4z_A
          Length = 500

 Score = 25.7 bits (56), Expect = 5.7
 Identities = 8/31 (25%), Positives = 15/31 (48%)

Query: 45 EATQKAAEKAAEAARKAAEQAAEAAKKAAEK 75
          E  ++  +KA +AAR A +  +   +  A  
Sbjct: 53 EGDKEDVDKAVKAARAAFQLGSPWRRMDASH 83


>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP
           cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas
           putida} SCOP: c.36.1.11 PDB: 2bp7_A
          Length = 407

 Score = 25.5 bits (55), Expect = 5.8
 Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 2/42 (4%)

Query: 33  QTLAERGKALLDEATQKAAEKAAEAARKAAEQAAEAAKKAAE 74
           Q L + G     E   +A     EAA  AA++ AE     A 
Sbjct: 340 QHLIKIG--HWSEEEHQATTAEFEAAVIAAQKEAEQYGTLAN 379


>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics,
           NPPSFA, national project on protein structural and
           functional analyses; 1.85A {Pyrococcus horikoshii OT3}
           SCOP: d.81.4.1 PDB: 2dma_A
          Length = 198

 Score = 25.4 bits (55), Expect = 6.1
 Identities = 16/78 (20%), Positives = 34/78 (43%), Gaps = 3/78 (3%)

Query: 40  KALLDEATQKAAEKAAEAARKAAEQAAEA---AKKAAEKIIHKDKKKPKENQEVNEVPVA 96
           + +  EA +K      EA ++A +   EA   A+  AE II + K + +  ++       
Sbjct: 9   QEINKEAERKIEYILNEARQQAEKIKEEARRNAEAKAEWIIRRAKTQAELEKQRIIANAR 68

Query: 97  ANIEPESQETQQQVINKT 114
             +  +    Q+++I+  
Sbjct: 69  LEVRRKRLAIQEEIISSV 86


>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase,
           AARS, serrs, translation, ATP-binding,
           nucleotide-binding, structural genomics; HET: ATP; 1.95A
           {Trypanosoma brucei} PDB: 3lsq_A*
          Length = 484

 Score = 25.5 bits (55), Expect = 6.1
 Identities = 9/72 (12%), Positives = 23/72 (31%), Gaps = 3/72 (4%)

Query: 54  AAEAARKAAEQAAE---AAKKAAEKIIHKDKKKPKENQEVNEVPVAANIEPESQETQQQV 110
            A+   +  +   E          K +   KK  + + + +E+P       E+   + + 
Sbjct: 41  EADKKWRRTQFLTEASKKLINICSKAVGAKKKAKEADGDTSEIPPQVKEAYENGTLKGEQ 100

Query: 111 INKTTTSQTDAE 122
           + +    Q    
Sbjct: 101 VEQLCVLQLKQL 112


>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, X-RAY
           diffraction, glycolysis, magnesium, metal-binding,
           oxidoreductase; HET: TDK; 1.77A {Escherichia coli} SCOP:
           c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A*
           2g25_A* 2g28_A* 2g67_A 2iea_A*
          Length = 886

 Score = 25.2 bits (54), Expect = 6.4
 Identities = 10/37 (27%), Positives = 11/37 (29%), Gaps = 3/37 (8%)

Query: 51  AEKAAEAARKAAEQAAEAAKKAAEKIIHK---DKKKP 84
           A     AA     +  E  KK     I K   D  K 
Sbjct: 845 ASYVVVAALGELAKRGEIDKKVVADAIAKFNIDADKV 881


>3i44_A Aldehyde dehydrogenase; oxidoreductase, structural genomics,
           seattle structural genomics center for infectious
           disease, ssgcid; 2.00A {Bartonella henselae}
          Length = 497

 Score = 25.3 bits (55), Expect = 6.5
 Identities = 12/72 (16%), Positives = 23/72 (31%), Gaps = 18/72 (25%)

Query: 45  EATQKAAEKAAEAARKA--------AEQAAEAAKKAAE----------KIIHKDKKKPKE 86
             + + A+KA  AA+KA          +     +K  E          K I  +   P +
Sbjct: 59  LGSTRDADKAINAAKKAFQTWKTTSPHERLGFVEKILEIYEKRSSDMAKTISMEMGAPID 118

Query: 87  NQEVNEVPVAAN 98
                +    ++
Sbjct: 119 MALNAQTATGSS 130


>3b8b_A CYSQ, sulfite synthesis pathway protein;
          3'-phosphoadenosine-5'-phosphosulfate (PAPS)
          3'-phosphatase, structural genomics; HET: MSE; 1.70A
          {Bacteroides thetaiotaomicron vpi-5482}
          Length = 292

 Score = 25.3 bits (54), Expect = 6.5
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)

Query: 59 RKAAEQAAEAAKKAAEKIIHKDKKKPKENQEVNE 92
          +  A  A +AA KA EKI+    + PK + E+  
Sbjct: 21 QSNAMAAIDAALKAGEKIL-SIYEDPKSDFEIER 53


>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability,
           potential tentoxin binding site, hydrolase; 3.20A
           {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
           PDB: 1kmh_B*
          Length = 498

 Score = 25.3 bits (55), Expect = 6.5
 Identities = 11/30 (36%), Positives = 13/30 (43%), Gaps = 2/30 (6%)

Query: 31  PPQTLAERGKALLDEATQKAAEKAAEAARK 60
           P Q     G   +DEAT KA     E+  K
Sbjct: 470 PEQAFYLVGN--IDEATAKAMNLEMESKLK 497


>1ez0_A ALDH, aldehyde dehydrogenase; nucleotide binding domain, NADP+,
          oxidoreductase; HET: NAP; 2.10A {Vibrio harveyi} SCOP:
          c.82.1.1 PDB: 1eyy_A*
          Length = 510

 Score = 25.1 bits (54), Expect = 6.9
 Identities = 8/40 (20%), Positives = 14/40 (35%), Gaps = 8/40 (20%)

Query: 45 EATQKAAEKAAEAARKA--------AEQAAEAAKKAAEKI 76
            T+    +AA AA K           + A   +  A ++
Sbjct: 26 VHTEVEVNQAATAAAKVARDFRRLNNSKRASLLRTIASEL 65


>2d4e_A 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase;
          HPCC, structural genomics, NPPSFA; HET: NAD; 2.10A
          {Thermus thermophilus HB8}
          Length = 515

 Score = 25.0 bits (54), Expect = 7.2
 Identities = 11/33 (33%), Positives = 19/33 (57%)

Query: 43 LDEATQKAAEKAAEAARKAAEQAAEAAKKAAEK 75
          LD AT +    AA    +  ++AA+AA +A ++
Sbjct: 47 LDPATNEVLGVAARGGEREVDRAAKAAHEAFQR 79



 Score = 24.6 bits (53), Expect = 9.4
 Identities = 9/40 (22%), Positives = 18/40 (45%), Gaps = 8/40 (20%)

Query: 45 EATQKAAEKAAEAARKA--------AEQAAEAAKKAAEKI 76
             ++  ++AA+AA +A        A++      + AE I
Sbjct: 60 RGGEREVDRAAKAAHEAFQRWSRTKAKERKRYLLRIAELI 99


>3iwj_A Putative aminoaldehyde dehydrogenase; rossmann fold, dimer,
          betaine aldehyde dehydrogenase, NAD, oxidoreductase;
          HET: NAD; 2.15A {Pisum sativum} PDB: 3iwk_A*
          Length = 503

 Score = 25.0 bits (54), Expect = 7.2
 Identities = 10/38 (26%), Positives = 16/38 (42%)

Query: 43 LDEATQKAAEKAAEAARKAAEQAAEAAKKAAEKIIHKD 80
          ++ ATQ        A ++  + A  AAK A  +    D
Sbjct: 28 INPATQNIIGDIPAATKEDVDVAVAAAKTALTRNKGAD 65


>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex;
           HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP:
           d.14.1.3 d.122.1.2
          Length = 390

 Score = 25.0 bits (54), Expect = 7.3
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)

Query: 37  ERGKALLDEATQKAAEKAAEAARKAAE 63
              KA+ ++A + A  +A EAARKA E
Sbjct: 364 RIAKAVYEKALRAA--QAREAARKARE 388


>2ve5_A BADH, betaine aldehyde dehydrogenase; aldehyde oxidation, NAD,
          NADP complex, oxidoreductase; HET: NAP CSO; 2.10A
          {Pseudomonas aeruginosa} PDB: 2wme_A*
          Length = 490

 Score = 25.0 bits (54), Expect = 7.3
 Identities = 7/40 (17%), Positives = 19/40 (47%), Gaps = 8/40 (20%)

Query: 45 EATQKAAEKAAEAARKA--------AEQAAEAAKKAAEKI 76
           A+++  E+A ++A +         A Q +   ++A + +
Sbjct: 40 RASREDVERAVQSAVEGQKVWAAMTAMQRSRILRRAVDIL 79


>1euh_A NADP dependent non phosphorylating glyceraldehyde-3-phosphate
          dehydrogenase; oxidoreductase; 1.82A {Streptococcus
          mutans} SCOP: c.82.1.1 PDB: 1qi6_A 2euh_A* 2id2_A*
          2qe0_A* 2esd_A* 1qi1_A*
          Length = 475

 Score = 25.2 bits (54), Expect = 7.4
 Identities = 6/40 (15%), Positives = 14/40 (35%), Gaps = 8/40 (20%)

Query: 45 EATQKAAEKAAEAARKA--------AEQAAEAAKKAAEKI 76
            + +  +    +A+KA          + A    K A+ +
Sbjct: 36 AMSTEEVDYVYASAKKAQPAWRALSYIERAAYLHKVADIL 75


>3my7_A Alcohol dehydrogenase/acetaldehyde dehydrogenase; ACDH, PSI,
          MCSG, structural genomics, midwest center for STR
          genomics; 2.30A {Vibrio parahaemolyticus}
          Length = 452

 Score = 25.1 bits (54), Expect = 7.5
 Identities = 5/39 (12%), Positives = 10/39 (25%), Gaps = 8/39 (20%)

Query: 46 ATQKAAEKAAEAARKA--------AEQAAEAAKKAAEKI 76
                +      +KA         EQ  +  + A+   
Sbjct: 4  TNMAELDAMIARVKKAQEEFATYSQEQVDKIFRAASLAA 42


>1xrs_A D-lysine 5,6-aminomutase alpha subunit; TIM barrel, rossmann
           domain, PLP, cobalamin, 5'- deoxyadenosine, radical,
           adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium
           sticklandii} SCOP: c.1.19.4
          Length = 516

 Score = 25.1 bits (55), Expect = 7.6
 Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 8/61 (13%)

Query: 32  PQTLAER---GKALLDEATQKAAEKAAEAARKAAEQAAE---AAKKAAEKII--HKDKKK 83
           PQ +A+    G+  L +   K   +    A   A++  E     +   E     + DK  
Sbjct: 91  PQEIAQAISAGELDLTKLPMKDLFEVKTKALSMAKETVEKIKNNRSIRESRFEEYGDKSG 150

Query: 84  P 84
           P
Sbjct: 151 P 151


>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens}
          SCOP: d.20.1.1
          Length = 179

 Score = 25.0 bits (54), Expect = 7.7
 Identities = 10/37 (27%), Positives = 17/37 (45%)

Query: 47 TQKAAEKAAEAARKAAEQAAEAAKKAAEKIIHKDKKK 83
           +  A  +  AARK AE +  AA+    K + ++   
Sbjct: 5  NRDPAATSVAAARKGAEPSGGAARGPVGKRLQQELMT 41


>1wiw_A Glucose-6-phosphate isomerase like protein; riken structural
          genomics/proteomics initiative, RSGI, structural
          genomics; 2.00A {Thermus thermophilus} SCOP: c.80.1.1
          Length = 290

 Score = 24.9 bits (54), Expect = 7.8
 Identities = 7/51 (13%), Positives = 13/51 (25%)

Query: 27 VAPPPPQTLAERGKALLDEATQKAAEKAAEAARKAAEQAAEAAKKAAEKII 77
           A P P      G+           +   E      E   +  + A   ++
Sbjct: 33 EAYPGPHAALGYGEGQFAALLSGLPDWGEEGTLFLLEGGYDLGEAAGMALL 83


>2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant
           protein; NMR {Arabidopsis thaliana}
          Length = 103

 Score = 24.9 bits (54), Expect = 8.5
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 2/34 (5%)

Query: 59  RKAAEQAAEAAKKAAEKIIHKDKKKPKENQEVNE 92
           RKAAEQ+A  A+ A  ++    +     +Q V+E
Sbjct: 70  RKAAEQSA--AEVALRELAKSSELSQCVSQPVHE 101


>2opt_A Actii protein; helical protein, TETR family, APO-protein,
           transcriptional repressor; 2.05A {Streptomyces
           coelicolor} PDB: 3b6a_A* 3b6c_A*
          Length = 234

 Score = 24.8 bits (53), Expect = 8.6
 Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 1/46 (2%)

Query: 24  ADPVAPPPPQTLAERG-KALLDEATQKAAEKAAEAARKAAEQAAEA 68
           A P+         E G + ++      A E A +  R A    AE+
Sbjct: 189 AGPITSLDSDRRFELGLEIIIAGLLAGAGEAADDQVRTAGSPPAES 234


>1q7z_A 5-methyltetrahydrofolate S-homocysteine methyltransferase;
           methionine, cobalamin, vitamin B12; 1.70A {Thermotoga
           maritima} SCOP: c.1.21.2 c.1.26.1 PDB: 1q7q_A 1q7m_A
           1q85_A 1q8a_A 1q8j_A* 3bof_A 3bol_A
          Length = 566

 Score = 25.0 bits (54), Expect = 8.9
 Identities = 8/38 (21%), Positives = 13/38 (34%), Gaps = 3/38 (7%)

Query: 32  PQTLAERGKALLDEATQKAAEKAAEAARKAAEQAAEAA 69
              L + G   L++        A   AR+AA +     
Sbjct: 70  RMKLRKHG---LEDKLDPIVRNAVRIARRAAGEKLVFG 104


>2go5_4 Ribosomal protein L23; SR, SRP, ribosome, translation/RNA
          complex; 7.40A {Triticum SP} PDB: 2j37_4
          Length = 152

 Score = 24.8 bits (54), Expect = 9.2
 Identities = 10/33 (30%), Positives = 13/33 (39%)

Query: 51 AEKAAEAARKAAEQAAEAAKKAAEKIIHKDKKK 83
          A K A A +  A+  A    KA +    K   K
Sbjct: 2  APKVAVAKKGDAKAQAAKVAKAVKSGSIKKTAK 34


>3ek1_A Aldehyde dehydrogenase; ssgcid, oxidoreductase, structural
           genomics; HET: MES; 2.10A {Brucella melitensis biovar
           ABORTUS2308}
          Length = 504

 Score = 24.9 bits (54), Expect = 9.4
 Identities = 8/40 (20%), Positives = 17/40 (42%), Gaps = 8/40 (20%)

Query: 45  EATQKAAEKAAEAARKA--------AEQAAEAAKKAAEKI 76
             +    ++A +A+ KA        A++ A   +K  + I
Sbjct: 66  SLSVATIKEAIDASAKALSGWAAKTAKERAGILRKWFDLI 105


>3l52_A Orotidine 5'-phosphate decarboxylase; TIM barrel, structural
           genomics, PSI-2, protein structure initiative; 1.35A
           {Streptomyces avermitilis}
          Length = 284

 Score = 24.7 bits (53), Expect = 9.5
 Identities = 7/23 (30%), Positives = 10/23 (43%)

Query: 50  AAEKAAEAARKAAEQAAEAAKKA 72
                  A R AA++ AE  + A
Sbjct: 259 RHGPDVRALRTAADRFAEEIRAA 281


>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2,
           protein structure initiative, midwest center for
           structural genomics; 2.40A {Pseudomonas aeruginosa}
          Length = 140

 Score = 24.6 bits (53), Expect = 9.5
 Identities = 10/44 (22%), Positives = 19/44 (43%)

Query: 34  TLAERGKALLDEATQKAAEKAAEAARKAAEQAAEAAKKAAEKII 77
           +L+  G+A L+     A E   +A    + Q  E  +    ++I
Sbjct: 97  SLSPAGRAELEAGLAAAREINRQALAPLSLQEQETLRGLLARLI 140


>2jpu_A ORF C02003 protein; solution structure, SSR10, NESG, structural
          genomics, PSI-2, protein structure initiative; NMR
          {Sulfolobus solfataricus} PDB: 2q00_A
          Length = 129

 Score = 24.8 bits (54), Expect = 9.7
 Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 2/33 (6%)

Query: 53 KAAEAARKAAEQA--AEAAKKAAEKIIHKDKKK 83
          +A E   KAAE+A      +   ++I +  K K
Sbjct: 25 QACEKYYKAAEEAIKLLVIENNLKEITNNVKNK 57


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.299    0.115    0.295 

Gapped
Lambda     K      H
   0.267   0.0528    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,143,331
Number of extensions: 47380
Number of successful extensions: 799
Number of sequences better than 10.0: 1
Number of HSP's gapped: 728
Number of HSP's successfully gapped: 238
Length of query: 159
Length of database: 5,693,230
Length adjustment: 85
Effective length of query: 74
Effective length of database: 3,632,490
Effective search space: 268804260
Effective search space used: 268804260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.7 bits)
S2: 53 (24.7 bits)