RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780909|ref|YP_003065322.1| hypothetical protein CLIBASIA_04040 [Candidatus Liberibacter asiaticus str. psy62] (159 letters) >3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} Length = 937 Score = 31.7 bits (71), Expect = 0.071 Identities = 20/110 (18%), Positives = 43/110 (39%), Gaps = 9/110 (8%) Query: 45 EATQKAAEKAAEAARKAAEQAAEAAKKAAEKIIHKDKKKPKENQEVNEVPVAANIEPESQ 104 E + AE A A+ A+ + EAA + K + K ++ V E +A +P+S Sbjct: 59 ENKLEKAEGVATASETASPASNEAATTETAEAASAAKPEEKASEVVAE-TPSAEAKPKSD 117 Query: 105 ETQQQVINKTTTSQTDAEKTPNEKRQGTTDGINNQSNATNDPSSKDKIAE 154 + + ++ +A +E + + + P + +K + Sbjct: 118 KETE--------AKPEATNQGDESKPAAEANKTEKEVQPDVPKNTEKTLK 159 Score = 26.7 bits (58), Expect = 2.4 Identities = 17/87 (19%), Positives = 33/87 (37%), Gaps = 7/87 (8%) Query: 24 ADPVAPPPPQTLAERGKALLDE---ATQKAAEKAAEAARKAAEQAAEAAKKAAEKIIHKD 80 A P + T + A++ AE + A+ +++ EA +A + D Sbjct: 75 ASPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQ---GD 131 Query: 81 KKKPKENQEVNEVPVAANIEPESQETQ 107 + KP E V ++ P++ E Sbjct: 132 ESKPAAEANKTEKEVQPDV-PKNTEKT 157 >3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} PDB: 3h4i_A* 1pn3_A* 1pnv_A* Length = 404 Score = 31.0 bits (69), Expect = 0.14 Identities = 7/46 (15%), Positives = 15/46 (32%), Gaps = 6/46 (13%) Query: 32 PQTLAERGKALLDEATQKAAEKAAEAARKAAEQAAEAAKKAAEKII 77 ++L+ L + A A R + AA+ ++ Sbjct: 339 VESLSAALATALTPGIRARAAAVAGTIR------TDGTTVAAKLLL 378 >3etf_A Putative succinate-semialdehyde dehydrogenase; center for structural genomics of infectious diseases, oxidoreductase, csgid; 1.85A {Salmonella typhimurium} PDB: 3efv_A Length = 462 Score = 30.3 bits (67), Expect = 0.21 Identities = 16/68 (23%), Positives = 23/68 (33%), Gaps = 13/68 (19%) Query: 17 TMASCGQADPVAPPPPQTLAERGKALLDEATQKAAEKAAEAARKA--------AEQAAEA 68 TM + QA V P QTLA + A + E A A Q A+ Sbjct: 2 TMMTATQALSVNPATGQTLAA-----MPWANAQEIEHALSLAASGFKKWKMTSVAQRAQT 56 Query: 69 AKKAAEKI 76 + + + Sbjct: 57 LRDIGQAL 64 >3k9d_A LMO1179 protein, aldehyde dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.00A {Listeria monocytogenes} Length = 464 Score = 30.0 bits (66), Expect = 0.22 Identities = 12/72 (16%), Positives = 23/72 (31%), Gaps = 18/72 (25%) Query: 44 DEATQKAAEKAAEAARKA--------AEQAAEAAKKAAE----------KIIHKDKKKPK 85 D + + E+A KA +Q K A+ K+ H++ Sbjct: 7 DLRSIQEVRNLIESANKAQKELAAMSQQQIDTIVKAIADAGYGAREKLAKMAHEETGFGI 66 Query: 86 ENQEVNEVPVAA 97 +V + A+ Sbjct: 67 WQDKVIKNVFAS 78 >3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii} Length = 188 Score = 29.8 bits (66), Expect = 0.27 Identities = 14/50 (28%), Positives = 22/50 (44%) Query: 28 APPPPQTLAERGKALLDEATQKAAEKAAEAARKAAEQAAEAAKKAAEKII 77 P + E ++A AEA R+AAE+ EAA+ +E + Sbjct: 112 VELPAGMQKAMARQAEAERERRARITLAEAERQAAEKLREAAEIISEHPM 161 >3b4w_A Aldehyde dehydrogenase; RV0223C-NAD complex, structural genomics, PSI-2, protein structure initiative; HET: NAD GOL; 1.80A {Mycobacterium tuberculosis H37RV} Length = 495 Score = 29.7 bits (66), Expect = 0.28 Identities = 10/47 (21%), Positives = 16/47 (34%), Gaps = 2/47 (4%) Query: 45 EATQKAAEKAAEAARKAAEQAAEAAKKAAE--KIIHKDKKKPKENQE 89 A + A AAR A + + E +I K E ++ Sbjct: 42 MAAAADVDAAVAAARAAFDNGPWPSTPPHERAAVIAAAVKMLAERKD 88 Score = 25.9 bits (56), Expect = 4.7 Identities = 9/30 (30%), Positives = 13/30 (43%) Query: 46 ATQKAAEKAAEAARKAAEQAAEAAKKAAEK 75 AT + K AA + A AA+ A + Sbjct: 32 ATGEYVGKVPMAAAADVDAAVAAARAAFDN 61 >2rag_A Dipeptidase; aminohydrolase, structural genomics, NYSGXRC, target 9257A, PSI-2, protein structure initiative; 2.00A {Caulobacter crescentus CB15} Length = 417 Score = 29.7 bits (66), Expect = 0.32 Identities = 11/45 (24%), Positives = 21/45 (46%) Query: 2 KRLKYQIILLSLLSTTMASCGQADPVAPPPPQTLAERGKALLDEA 46 + L + + LSL + ++A P P +++ KAL D+ Sbjct: 3 RPLLFALTALSLTAASLAHAADKKAADKPAPSAVSKADKALHDKF 47 >1rrv_A Glycosyltransferase GTFD; GT-B, rossmann fold; HET: DVV TYD; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5 Length = 416 Score = 29.6 bits (65), Expect = 0.34 Identities = 9/49 (18%), Positives = 14/49 (28%), Gaps = 8/49 (16%) Query: 32 PQTLAERGKALLDEATQKAAEKAAEAAR--------KAAEQAAEAAKKA 72 ++L+ +L T+ AE A A K A Sbjct: 357 FESLSAALTTVLAPETRARAEAVAGMVLTDGXXXXXDLVLAAVGREKPA 405 >2o2p_A Formyltetrahydrofolate dehydrogenase; aldehyde dehydrogenase, FDH, oxidoreductase; 1.70A {Rattus norvegicus} PDB: 2o2q_A* 2o2r_A* Length = 517 Score = 28.9 bits (64), Expect = 0.51 Identities = 8/37 (21%), Positives = 17/37 (45%), Gaps = 2/37 (5%) Query: 45 EATQKAAEKAAEAARKAAEQAAEAAKKAAE--KIIHK 79 A +KA AA++A E A + +++++ Sbjct: 70 LAQVSDVDKAVAAAKEAFENGLWGKINARDRGRLLYR 106 Score = 25.8 bits (56), Expect = 4.5 Identities = 7/30 (23%), Positives = 12/30 (40%) Query: 46 ATQKAAEKAAEAARKAAEQAAEAAKKAAEK 75 + + A ++A AAK+A E Sbjct: 60 TDGSVICQVSLAQVSDVDKAVAAAKEAFEN 89 >1un8_A Dihydroxyacetone kinase; glycerone kinase, DHA kinase; HET: MYY; 2.5A {Citrobacter freundii} SCOP: a.208.1.1 c.119.1.2 PDB: 1un9_A* Length = 552 Score = 29.1 bits (65), Expect = 0.53 Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 4/47 (8%) Query: 33 QTLAERGKALLDEAT----QKAAEKAAEAARKAAEQAAEAAKKAAEK 75 + G A + T + A + A K + A +AA+ AE+ Sbjct: 462 AQMKFYGGADEGDRTMIDALQPALTSLLAQPKNLQAAFDAAQAGAER 508 >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Score = 28.7 bits (63), Expect = 0.66 Identities = 25/102 (24%), Positives = 39/102 (38%), Gaps = 25/102 (24%) Query: 22 GQADPVAPPPPQTLAERGKALLDEATQKAAEKAAEAARKAAEQA-AEAAKKAAEKIIHKD 80 QAD + P E + +E ++ E +AA K EQ E AKK E+ Sbjct: 75 AQADRLTQEP-----ESIRKWREEQRKRLQE--LDAASKVMEQEWREKAKKDLEEW---- 123 Query: 81 KKKPKENQEVNEVPVAANIEPESQETQQQVINKTTTSQTDAE 122 NQ +E + E + ++ +K Q DA+ Sbjct: 124 ------NQRQSE-------QVEKNKINNRIADKAFYQQPDAD 152 >1uxt_A Glyceraldehyde-3-phosphate dehydrogenase (NADP+); GAPN, ALDH, glucose 1-phosphate, glycolysis, regulation, catatysis, oxidoreductase; HET: G1P NAD; 2.2A {Thermoproteus tenax} SCOP: c.82.1.1 PDB: 1uxp_A* 1uxq_A* 1uxr_A* 1uxn_A* 1uxu_A* 1uxv_A* 1ky8_A* Length = 501 Score = 28.4 bits (62), Expect = 0.73 Identities = 6/41 (14%), Positives = 14/41 (34%), Gaps = 9/41 (21%) Query: 45 EATQKAAEKAAEAARKAAEQA---------AEAAKKAAEKI 76 +++ E+ + K + +KAA+ I Sbjct: 50 SPSREEVERTLDVLFKRGRWSARDMPGTERLAVLRKAADII 90 Score = 28.0 bits (61), Expect = 0.98 Identities = 4/29 (13%), Positives = 8/29 (27%) Query: 46 ATQKAAEKAAEAARKAAEQAAEAAKKAAE 74 K +R+ E+ + K Sbjct: 40 IDLATIAKVISPSREEVERTLDVLFKRGR 68 >1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unknown function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 Length = 499 Score = 28.1 bits (61), Expect = 0.85 Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 7/40 (17%) Query: 55 AEAARKAAEQAAE-------AAKKAAEKIIHKDKKKPKEN 87 + + +AA + AA+ AAE++ P N Sbjct: 454 SGSITEAARRLMAHDDLDCTAAQDAAEQLALVPHHLPTSN 493 >2nq5_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; structural genomics, target 6426D, PSI; 1.90A {Streptococcus mutans} Length = 755 Score = 28.4 bits (63), Expect = 0.85 Identities = 11/75 (14%), Positives = 25/75 (33%), Gaps = 2/75 (2%) Query: 40 KALLDEATQKAAEKA--AEAARKAAEQAAEAAKKAAEKIIHKDKKKPKENQEVNEVPVAA 97 + L A +K E AE + A + + + D + K Sbjct: 339 RNGLAFADEKLTEVKRLAEHLDGREDPAYDLHIAHFDALQAADFRNVKLEDLSRVATKRP 398 Query: 98 NIEPESQETQQQVIN 112 + + ++ QQ+ ++ Sbjct: 399 SDFAKRRDIQQEKLH 413 >3ed6_A Betaine aldehyde dehydrogenase; structural genomics, infectious deseases, NAD, oxidoreductase, PSI, protein structure initiative; 1.70A {Staphylococcus aureus} PDB: 3fg0_A* Length = 520 Score = 28.1 bits (62), Expect = 0.89 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%) Query: 45 EATQKAAEKAAEAARKAAEQAAEAAKKAAE--KIIHKDKKKPKENQE 89 E T++ AE+A AAR+A E + + A K + K KE++E Sbjct: 66 EGTKEDAERAILAARRAFESGEWSQETAETRGKKVRAIADKIKEHRE 112 Score = 25.0 bits (54), Expect = 7.7 Identities = 9/32 (28%), Positives = 18/32 (56%) Query: 43 LDEATQKAAEKAAEAARKAAEQAAEAAKKAAE 74 ++ Q+ +E ++ AE+A AA++A E Sbjct: 53 INPYNQEVIFTVSEGTKEDAERAILAARRAFE 84 >3p0r_A Azoreductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.80A {Bacillus anthracis} Length = 211 Score = 28.1 bits (62), Expect = 0.97 Identities = 9/27 (33%), Positives = 13/27 (48%) Query: 45 EATQKAAEKAAEAARKAAEQAAEAAKK 71 E + +KA E E+AA+ A K Sbjct: 184 EGHNQFPDKAEEIITAGLEEAAKVANK 210 >3ju8_A Succinylglutamic semialdehyde dehydrogenase; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.82A {Pseudomonas aeruginosa} Length = 490 Score = 27.7 bits (60), Expect = 1.2 Identities = 10/40 (25%), Positives = 15/40 (37%), Gaps = 8/40 (20%) Query: 45 EATQKAAEKAAEAARKA--------AEQAAEAAKKAAEKI 76 A + A AAR+A EQ E ++ A + Sbjct: 38 GADATQVDAAVCAAREAFPAWARRPLEQRIELLERFAATL 77 Score = 27.7 bits (60), Expect = 1.4 Identities = 8/33 (24%), Positives = 11/33 (33%) Query: 43 LDEATQKAAEKAAEAARKAAEQAAEAAKKAAEK 75 LD Q A + A AA++A Sbjct: 25 LDPVGQGVVWSGRGADATQVDAAVCAAREAFPA 57 >2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* Length = 313 Score = 27.9 bits (61), Expect = 1.2 Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 11/54 (20%) Query: 40 KALLDEATQKAAEKAAEAARKAAEQ-----------AAEAAKKAAEKIIHKDKK 82 + L+DE E A AR+ A + A AA + A + + K Sbjct: 237 QDLVDEIITVGNEDALNVARRLAREEGLLVGISSGAATVAALQVARRPENAGKL 290 >2p6p_A Glycosyl transferase; GT-B family, X-RAY-diffraction,urdamycina- biosynthesis; 1.88A {Streptomyces fradiae} Length = 384 Score = 27.4 bits (59), Expect = 1.4 Identities = 5/45 (11%), Positives = 16/45 (35%), Gaps = 3/45 (6%) Query: 32 PQTLAERGKALL-DEATQKAAEKAAE--AARKAAEQAAEAAKKAA 73 + +A+ + L + + A+ + + A ++ A Sbjct: 334 TEAIADSCQELQAKDTYARRAQDLSREISGMPLPATVVTALEQLA 378 >2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.52.1.1 Length = 214 Score = 27.5 bits (61), Expect = 1.4 Identities = 13/82 (15%), Positives = 29/82 (35%), Gaps = 1/82 (1%) Query: 33 QTLAERGKALLDEATQKAAEKAAEAARKAAEQAAEAAKKAAEKIIH-KDKKKPKENQEVN 91 Q L ++ L D A R+ + K + I ++ + KE + + Sbjct: 115 QALVQKRHYLFDVQRNNIAMALEVTYRERLHRVYREVKNRLDYHISVQNMMRQKEQEHMI 174 Query: 92 EVPVAANIEPESQETQQQVINK 113 ++ S + +++ I K Sbjct: 175 NWVEKRVVQSISAQQEKETIAK 196 >1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A Length = 465 Score = 27.4 bits (60), Expect = 1.7 Identities = 12/48 (25%), Positives = 18/48 (37%) Query: 35 LAERGKALLDEATQKAAEKAAEAARKAAEQAAEAAKKAAEKIIHKDKK 82 E+G + E Q E+ E ARK + A+ K + K Sbjct: 402 AREKGLGIDLEGFQCELEEQRERARKHFKVEAKKVKPVYSHLKELGKT 449 >3h4z_A Maltose-binding periplasmic protein fused with Al DERP7; MBP fusion, AHA1/BPI domain-like, super roll, sugar T transport, allergen; HET: GLC; 2.35A {Escherichia coli} PDB: 1mg1_A* Length = 568 Score = 27.3 bits (60), Expect = 1.7 Identities = 13/74 (17%), Positives = 26/74 (35%), Gaps = 4/74 (5%) Query: 43 LDEATQKAA--EKAAEAARKAAEQAAEAAKKAAEKIIHKDKKKPKENQEVNEVPVAANIE 100 + A AA + +AA AA+ A A +KI ++ ++ V + + + Sbjct: 343 VRTAVINAASGRQTVDAALAAAQTNAAADPIHYDKIT--EEINKAVDEAVAAIEKSETFD 400 Query: 101 PESQETQQQVINKT 114 P + Sbjct: 401 PMKVPDHSDKFERH 414 >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688 Score = 27.1 bits (59), Expect = 1.8 Identities = 10/28 (35%), Positives = 18/28 (64%), Gaps = 2/28 (7%) Query: 84 PKENQEVNEVPVAANIEP--ESQETQQQ 109 P++ + + EV V ++EP S+ET +Q Sbjct: 917 PEKKEMIQEVIVEEDLEPFEASKETAEQ 944 >1t90_A MMSDH, probable methylmalonate-semialdehyde dehydrogenase; oxidoreductase, NAD; HET: NAD; 2.50A {Bacillus subtilis} Length = 486 Score = 27.1 bits (59), Expect = 1.8 Identities = 16/115 (13%), Positives = 33/115 (28%), Gaps = 18/115 (15%) Query: 45 EATQKAAEKAAEAARKA--------AEQAAEAAKKAAE----------KIIHKDKKKPKE 86 +T++ + AA+ A +A + A + +I + K + Sbjct: 39 ISTKEDIDYAAQTAAEAFKTWSKVAVPRRARILFNFQQLLSQHKEELAHLITIENGKNTK 98 Query: 87 NQEVNEVPVAANIEPESQETQQQVINKTTTSQTDAEKTPNEKRQGTTDGINNQSN 141 N+E + + + + TD E G GI + Sbjct: 99 EALGEVGRGIENVEFAAGAPSLMMGDSLASIATDVEAANYRYPIGVVGGIAPFNF 153 >1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase, methyltransferase, guanylyltransferase, zinc finger, icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1 PDB: 2cse_V Length = 1275 Score = 26.9 bits (59), Expect = 1.9 Identities = 30/136 (22%), Positives = 55/136 (40%), Gaps = 14/136 (10%) Query: 23 QADPVAPPPPQTLAERGKALLDEATQKAAEKAAEAARKAAEQAAEAAKKAAEKIIHKDKK 82 +A P P + E+ +A A+ + A ++AE K ++ DKK Sbjct: 37 KAGPATTEPGTSNREQYRARPGIASVQRATESAELPMKNNDEGT------------PDKK 84 Query: 83 KPKENQEVNEVPVAANIEPESQETQQQVINKTTTSQTDAEKTPNEKRQGTTDG-INNQSN 141 VNE A + E+ + Q + +K+ T ++ N + + G ++N+ Sbjct: 85 GNTRGDLVNEHSEAKDEADEATQKQAKDTDKSKAQVTYSDTGINNANELSRSGNVDNEGG 144 Query: 142 ATNDPSSKDKIAENTK 157 + P S +IAE T Sbjct: 145 SNQKPMS-TRIAEATS 159 >1lbv_A Fbpase/impase, fructose 1,6-bisphosphatase/inositol monophosphatase; dual activity, archaeal phosphatase, APO- form, hydrolase; 1.80A {Archaeoglobus fulgidus} SCOP: e.7.1.1 PDB: 1lbw_A 1lbx_A* 1lby_A* 1lbz_A* Length = 252 Score = 27.1 bits (59), Expect = 1.9 Identities = 8/47 (17%), Positives = 14/47 (29%) Query: 52 EKAAEAARKAAEQAAEAAKKAAEKIIHKDKKKPKENQEVNEVPVAAN 98 A +R+ A + +A + KD K+ A Sbjct: 4 RDALRISREIAGEVRKAIASMPLRERVKDVGMGKDGTPTKAADRVAE 50 >1wnd_A Putative betaine aldehyde dehydrogenase; NADH, fluorescence, kinetics, oxidoreductase; 2.10A {Escherichia coli K12} SCOP: c.82.1.1 PDB: 1wnb_A Length = 495 Score = 27.1 bits (59), Expect = 2.1 Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 8/40 (20%) Query: 45 EATQKAAEKAAEAARKA--------AEQAAEAAKKAAEKI 76 EA+ + + A AA A + AE K A+ I Sbjct: 56 EASAEQVDAAVRAADAAFAEWGQTTPKVRAECLLKLADVI 95 Score = 25.9 bits (56), Expect = 4.0 Identities = 9/30 (30%), Positives = 14/30 (46%) Query: 46 ATQKAAEKAAEAARKAAEQAAEAAKKAAEK 75 AT + AEA+ + + A AA A + Sbjct: 46 ATGDVLLEIAEASAEQVDAAVRAADAAFAE 75 >2gh9_A Maltose/maltodextrin-binding protein; MBP, maltose binding protein, thermophilic protein, periplasmic binding protein; HET: MLR; 1.95A {Thermus thermophilus HB27} Length = 386 Score = 26.8 bits (57), Expect = 2.4 Identities = 5/35 (14%), Positives = 10/35 (28%) Query: 45 EATQKAAEKAAEAARKAAEQAAEAAKKAAEKIIHK 79 A A + ++ E +K I + Sbjct: 346 GPWGNAISLAIQRPDSNVKKIVEDMVAEIKKAIGR 380 >1inp_A Inositol polyphosphate 1-phosphatase; hydrolase(phosphoric monoester); 2.30A {Bos taurus} SCOP: e.7.1.1 Length = 400 Score = 26.9 bits (58), Expect = 2.5 Identities = 11/35 (31%), Positives = 15/35 (42%) Query: 49 KAAEKAAEAARKAAEQAAEAAKKAAEKIIHKDKKK 83 + +EKAA AR +Q EK + KK Sbjct: 10 RVSEKAANIARACRQQETLFQLLIEEKKEGEKNKK 44 >2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, ketoacid dehydrogenase, branched-chain, multi- enzyme complex, acylation; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ... Length = 400 Score = 26.8 bits (58), Expect = 2.5 Identities = 10/41 (24%), Positives = 16/41 (39%) Query: 40 KALLDEATQKAAEKAAEAARKAAEQAAEAAKKAAEKIIHKD 80 + DE +KA K + A + AE K ++ D Sbjct: 326 QGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPNPNLLFSD 366 >2j6l_A Aldehyde dehydrogenase family 7 member A1; NAD, reductase, oxidoreductase, lysine catabolism; HET: NAI; 1.3A {Homo sapiens} PDB: 2jg7_A* Length = 500 Score = 26.4 bits (57), Expect = 2.8 Identities = 7/40 (17%), Positives = 17/40 (42%), Gaps = 8/40 (20%) Query: 45 EATQKAAEKAAEAARKA--------AEQAAEAAKKAAEKI 76 +A+ E+ + AR+A A + E ++ + + Sbjct: 55 QASVADYEETVKKAREAWKIWADIPAPKRGEIVRQIGDAL 94 >1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B* Length = 724 Score = 26.4 bits (57), Expect = 2.8 Identities = 12/55 (21%), Positives = 24/55 (43%) Query: 25 DPVAPPPPQTLAERGKALLDEATQKAAEKAAEAARKAAEQAAEAAKKAAEKIIHK 79 + PP + L E LL+ A+++ A + A + A + K ++ H+ Sbjct: 628 NIQMDPPSRFLNEIPAHLLETASRRQAGASRPAVSRPQASGAVGSWKVGDRANHR 682 >2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: FMN; 2.00A {Enterococcus faecalis} Length = 208 Score = 26.4 bits (57), Expect = 3.0 Identities = 7/27 (25%), Positives = 10/27 (37%) Query: 45 EATQKAAEKAAEAARKAAEQAAEAAKK 71 E ++A E A +A E K Sbjct: 181 EGIDHFPDRAEELLNTAMTKATEYGKT 207 >3k2w_A Betaine-aldehyde dehydrogenase; structural genomics, PSI-2, protein structure initiative; 1.90A {Pseudoalteromonas atlantica T6C} Length = 497 Score = 26.2 bits (57), Expect = 3.0 Identities = 10/40 (25%), Positives = 13/40 (32%), Gaps = 8/40 (20%) Query: 45 EATQKAAEKAAEAARKA--------AEQAAEAAKKAAEKI 76 + AE A E A+ A A + A KI Sbjct: 46 AGCKADAENALEVAQAAQKAWAKLTARTRQNMLRTFANKI 85 Score = 25.5 bits (55), Expect = 6.3 Identities = 9/33 (27%), Positives = 14/33 (42%) Query: 43 LDEATQKAAEKAAEAARKAAEQAAEAAKKAAEK 75 L +T K + + AE A E A+ A + Sbjct: 33 LSPSTGKVIGEIPAGCKADAENALEVAQAAQKA 65 >3euo_A Type III pentaketide synthase; alpha helix, acyltransferase, transferase; 1.75A {Neurospora crassa} PDB: 3eut_A* 3euq_A* Length = 379 Score = 26.5 bits (57), Expect = 3.1 Identities = 11/41 (26%), Positives = 16/41 (39%) Query: 25 DPVAPPPPQTLAERGKALLDEATQKAAEKAAEAARKAAEQA 65 +P P + K L + A EA+RKA +A Sbjct: 56 NPDHPLVNKPNPPTVKELHEVFMSDGVPLAVEASRKAMAEA 96 >2p4f_A Similar to SP|P32453 saccharomyces cerevisiae YNL315C ATP11; half barrel, chaperone; HET: P6G; 1.40A {Candida glabrata cbs 138} Length = 299 Score = 26.5 bits (58), Expect = 3.1 Identities = 14/95 (14%), Positives = 29/95 (30%), Gaps = 5/95 (5%) Query: 34 TLAERGKALLDEATQKAAEKAAEAARKAAEQAAEAAKKAAEKIIHKDKKKPKENQEVNEV 93 + +R K L + + ++ E +K E KK KI + + N Sbjct: 12 SGEDRYKEKLLQKAKAEGVESIEELKKRLADQIEEKKKELNKIDPLRELEQHLNAGSRIH 71 Query: 94 PVAANIEPESQETQQQVINKTTTSQTDAEKTPNEK 128 E + T+ + + + P + Sbjct: 72 T-----NKEHKTTKMSNKSNEKSGNVLPKDKPYKT 101 >1khc_A DNA cytosine-5 methyltransferase 3B2; five beta-sheets barrel followed by five-helix bundle; HET: DNA; 1.80A {Mus musculus} SCOP: b.34.9.2 PDB: 3flg_A* Length = 147 Score = 26.5 bits (58), Expect = 3.1 Identities = 10/45 (22%), Positives = 15/45 (33%) Query: 44 DEATQKAAEKAAEAARKAAEQAAEAAKKAAEKIIHKDKKKPKENQ 88 + A + RKA E A+ A K + E+Q Sbjct: 73 SQHFNLATFNKLVSYRKAMYHTLEKARVRAGKTFSSSPGESLEDQ 117 >1uzb_A 1-pyrroline-5-carboxylate dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.4A {Thermus thermophilus} SCOP: c.82.1.1 PDB: 2eiw_A 2bhq_A* 2bhp_A* 2bja_A* 2bjk_A* 2ehq_A* 2ehu_A* 2eii_A* 2eit_A* 2ej6_A 2ejd_A* 2ejl_A 2iy6_A* 2j40_A* 2j5n_A* Length = 516 Score = 26.4 bits (57), Expect = 3.1 Identities = 11/30 (36%), Positives = 15/30 (50%) Query: 46 ATQKAAEKAAEAARKAAEQAAEAAKKAAEK 75 A + A+A + AE A EAA KA + Sbjct: 60 APSEVVGTTAKAGKAEAEAALEAAWKAFKT 89 Score = 26.0 bits (56), Expect = 4.3 Identities = 10/45 (22%), Positives = 21/45 (46%) Query: 45 EATQKAAEKAAEAARKAAEQAAEAAKKAAEKIIHKDKKKPKENQE 89 +A + AE A EAA KA + + ++ +++ K + + Sbjct: 70 KAGKAEAEAALEAAWKAFKTWKDWPQEDRSRLLLKAAALMRRRKR 114 >3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} Length = 393 Score = 26.2 bits (57), Expect = 3.2 Identities = 6/24 (25%), Positives = 11/24 (45%) Query: 37 ERGKALLDEATQKAAEKAAEAARK 60 + +A+ D+ K K+ E K Sbjct: 364 KNREAINDDVIAKFTNKSREQLLK 387 >3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28 Length = 166 Score = 26.4 bits (58), Expect = 3.2 Identities = 9/45 (20%), Positives = 17/45 (37%) Query: 34 TLAERGKALLDEATQKAAEKAAEAARKAAEQAAEAAKKAAEKIIH 78 L E+ + L+ E + + E + + E K K+ H Sbjct: 113 KLTEKAEPLIAEMEEVIHKTRGEILAGISSEEIELLIKLIAKLEH 157 >1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.30A {Thermotoga maritima MSB8} SCOP: c.14.1.4 c.14.1.4 Length = 527 Score = 26.2 bits (57), Expect = 3.5 Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 14/88 (15%) Query: 51 AEKAAEAARKAAEQAAEAAKKAAEKIIHKDKKKPKENQEVNEVPVAAN------IEPESQ 104 E AA K +A+ ++ K+I + + Q N A+ I+P Sbjct: 445 PEGAANIIFKREIEASSNPEETRRKLIEE-----YKQQFANPYIAASRGYVDMVIDPR-- 497 Query: 105 ETQQQVINKTTTSQTDAEKTPNEKRQGT 132 ET++ ++ +T E P +K+ G Sbjct: 498 ETRKYIMRALEVCETKVEYRP-KKKHGN 524 >3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii} Length = 219 Score = 26.2 bits (57), Expect = 3.7 Identities = 12/62 (19%), Positives = 31/62 (50%) Query: 48 QKAAEKAAEAARKAAEQAAEAAKKAAEKIIHKDKKKPKENQEVNEVPVAANIEPESQETQ 107 ++ + A A + A E+ + + +I KD K E++E+ ++ + +P+ + T+ Sbjct: 153 EEGIKLALNALKSAMERDTFSGNGISLAVITKDGVKIFEDEEIEKILDSMKAKPKKKTTK 212 Query: 108 QQ 109 + Sbjct: 213 RS 214 >2g40_A Conserved hypothetical protein; 6459694, structural genomics, PSI, protein structure initiative, joint center for structural genomics; 1.70A {Deinococcus radiodurans} SCOP: c.124.1.7 Length = 224 Score = 26.0 bits (57), Expect = 3.9 Identities = 10/54 (18%), Positives = 16/54 (29%) Query: 22 GQADPVAPPPPQTLAERGKALLDEATQKAAEKAAEAARKAAEQAAEAAKKAAEK 75 G PP P +L + + + A +A + A KA Sbjct: 36 GSRPEALPPYPVPAPLSRAEILHQFEDRILDYGAAYTHVSAAELPGAIAKALGN 89 >1bxs_A Aldehyde dehydrogenase; retinal, class 1, tetramer, NAD, cytosolic, oxidoreductase; HET: NAD; 2.35A {Ovis aries} SCOP: c.82.1.1 PDB: 1o9j_A* 1bi9_A* Length = 501 Score = 26.2 bits (57), Expect = 3.9 Identities = 8/31 (25%), Positives = 16/31 (51%) Query: 45 EATQKAAEKAAEAARKAAEQAAEAAKKAAEK 75 E ++ +KA +AAR+A + + A + Sbjct: 54 EGDKEDVDKAVKAARQAFQIGSPWRTMDASE 84 Score = 24.6 bits (53), Expect = 9.3 Identities = 8/45 (17%), Positives = 20/45 (44%) Query: 46 ATQKAAEKAAEAARKAAEQAAEAAKKAAEKIIHKDKKKPKENQEV 90 AT++ + E ++ ++A +AA++A + E + Sbjct: 44 ATEEKLCEVEEGDKEDVDKAVKAARQAFQIGSPWRTMDASERGRL 88 >2nn6_A Polymyositis/scleroderma autoantigen 1; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1 Length = 358 Score = 25.9 bits (56), Expect = 4.1 Identities = 10/49 (20%), Positives = 17/49 (34%), Gaps = 4/49 (8%) Query: 52 EKAAEAARKAAEQAAEAAKKAAEKIIHKDKKKPKENQEVNEVPVAANIE 100 + ++ A + E KA + D+K KE + AN Sbjct: 265 LRCSKIAGVKVAEITELILKA----LENDQKVRKEGGKFGFAESIANQR 309 >3fpw_A HBPS, extracellular HAEM-binding protein; heme binding protein; 1.60A {Streptomyces reticuli} PDB: 3fpv_A Length = 192 Score = 26.0 bits (57), Expect = 4.4 Identities = 18/63 (28%), Positives = 24/63 (38%), Gaps = 2/63 (3%) Query: 9 ILLSLLSTTMASCGQADPVAPPPPQTLAERGKALLDEATQKAAEKAAEAARKAAEQAAEA 68 L L + + + A A T A A ++ EAA KAA A EA Sbjct: 23 ALAVLGAGVVGTV--AANAADTTEATPAAAPVAARGGELTQSTHLTLEAATKAARAAVEA 80 Query: 69 AKK 71 A+K Sbjct: 81 AEK 83 >1o20_A Gamma-glutamyl phosphate reductase; TM0293, structural genomics, JCSG, PSI, protein structure initiative; 2.00A {Thermotoga maritima} SCOP: c.82.1.1 Length = 427 Score = 25.9 bits (56), Expect = 4.7 Identities = 13/55 (23%), Positives = 19/55 (34%), Gaps = 10/55 (18%) Query: 43 LDEATQKAAEKAAEAARKAAEQAAEAAKKAAEKI----------IHKDKKKPKEN 87 L E +K E + +A KK AEK+ D +K +E Sbjct: 16 LLEKAKKVREAWDVLRNATTREKNKAIKKIAEKLDERRKEILEANRIDVEKARER 70 >2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, PSI, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 Length = 146 Score = 25.8 bits (56), Expect = 4.7 Identities = 6/50 (12%), Positives = 16/50 (32%) Query: 34 TLAERGKALLDEATQKAAEKAAEAARKAAEQAAEAAKKAAEKIIHKDKKK 83 L + L+ + AA + E ++ +I+ + + Sbjct: 97 VLTPKADVLIADIEAIAASVRNDVLTGIDESEQALCQQVLLRILANLENR 146 >1a4s_A ALDH, betaine aldehyde dehydrogenase; oxidoreductase, aldehyde oxidation; 2.10A {Gadus callarias} SCOP: c.82.1.1 PDB: 1bpw_A* Length = 503 Score = 25.8 bits (56), Expect = 5.0 Identities = 7/30 (23%), Positives = 14/30 (46%) Query: 46 ATQKAAEKAAEAARKAAEQAAEAAKKAAEK 75 AT + + + +QA ++A+ A K Sbjct: 44 ATGRVLCQMVPCGAEEVDQAVQSAQAAYLK 73 Score = 25.8 bits (56), Expect = 5.0 Identities = 6/40 (15%), Positives = 15/40 (37%), Gaps = 8/40 (20%) Query: 45 EATQKAAEKAAEAARKA--------AEQAAEAAKKAAEKI 76 + ++A ++A+ A + + +AA I Sbjct: 54 PCGAEEVDQAVQSAQAAYLKWSKMAGIERSRVMLEAARII 93 >2w8n_A Succinate-semialdehyde dehydrogenase, mitochondrial; mitochondrion, oxidoreductase, transit peptide, disease mutation, SSA, NAD, ssadh; 2.00A {Homo sapiens} PDB: 2w8o_A 2w8p_A 2w8q_A 2w8r_A* Length = 487 Score = 25.8 bits (56), Expect = 5.0 Identities = 7/40 (17%), Positives = 15/40 (37%), Gaps = 8/40 (20%) Query: 45 EATQKAAEKAAEAARKA--------AEQAAEAAKKAAEKI 76 + + A A AA +A A++ + +K + Sbjct: 44 DCGVREARAAVRAAYEAFCRWREVSAKERSSLLRKWYNLM 83 Score = 25.0 bits (54), Expect = 7.0 Identities = 8/30 (26%), Positives = 13/30 (43%) Query: 46 ATQKAAEKAAEAARKAAEQAAEAAKKAAEK 75 A+ A A+ + A A AA +A + Sbjct: 34 ASGAALGMVADCGVREARAAVRAAYEAFCR 63 >2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis} Length = 414 Score = 25.5 bits (55), Expect = 5.1 Identities = 9/63 (14%), Positives = 18/63 (28%), Gaps = 8/63 (12%) Query: 13 LLSTTMASCGQADPVAPPPPQTLAERGKALLDEATQKAAEKAAEAARKAAEQAAEAAKKA 72 + + +AD + + E + A A ++A +K Sbjct: 359 DIVAELRDGCKADVYDEKG---ITFKFN--YTEELLEQAY---NAGVDLGKRAIAYCEKN 410 Query: 73 AEK 75 A K Sbjct: 411 APK 413 >1oah_A Cytochrome C nitrite reductase; nitrogen cycle, respiratory nitrite ammonification; HET: HEM; 2.3A {Desulfovibrio desulfuricans} SCOP: a.138.1.3 Length = 519 Score = 25.8 bits (56), Expect = 5.2 Identities = 11/58 (18%), Positives = 20/58 (34%) Query: 53 KAAEAARKAAEQAAEAAKKAAEKIIHKDKKKPKENQEVNEVPVAANIEPESQETQQQV 110 + E ++KA + A EA + D KK + + E Q ++ Sbjct: 445 TSMECSQKAVDLATEATDFGIAPALAGDIKKLVPPILTLSRKLQQDPEFLKQNPWTRL 502 >2imp_A Lactaldehyde dehydrogenase; protein-lactate-NADH ternary complex, oxidoreductase; HET: NAI; 2.10A {Escherichia coli} PDB: 2ilu_A* 2hg2_A* 2opx_A* Length = 479 Score = 25.5 bits (55), Expect = 5.2 Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 8/40 (20%) Query: 45 EATQKAAEKAAEAARKA--------AEQAAEAAKKAAEKI 76 + + A KA +AA +A A + A +K + I Sbjct: 40 DGQAEDARKAIDAAERAQPEWEALPAIERASWLRKISAGI 79 Score = 25.5 bits (55), Expect = 5.9 Identities = 7/30 (23%), Positives = 16/30 (53%) Query: 46 ATQKAAEKAAEAARKAAEQAAEAAKKAAEK 75 AT+ + + + A +A +AA++A + Sbjct: 30 ATEAVISRIPDGQAEDARKAIDAAERAQPE 59 >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336 Score = 25.5 bits (55), Expect = 5.3 Identities = 14/84 (16%), Positives = 30/84 (35%), Gaps = 4/84 (4%) Query: 40 KALLDEATQKAAEKAAEAARKAAEQAAEAAKKAAEKIIHKDKKKPKENQEVNEVPVAANI 99 K L KAA+ ++ + KK + ++ E + + ++ Sbjct: 255 KVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF----ERLAEEENKAKAEASSGD 310 Query: 100 EPESQETQQQVINKTTTSQTDAEK 123 P E +++ + T SQ+ E Sbjct: 311 HPTDTEMKEEQKSNTAGSQSQVET 334 >3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli} Length = 471 Score = 25.5 bits (55), Expect = 5.3 Identities = 18/89 (20%), Positives = 29/89 (32%), Gaps = 3/89 (3%) Query: 43 LDEATQKAA--EKAAEAARKAAEQAAEAAKKAAEKIIHKDKKKPKENQEVNEVPVAANIE 100 + A AA + + A K A+ AA+ ++ QE+ E Sbjct: 357 VRTAVINAASGRQTVDEALKDAQTRITAARDGLRAVMEARNVTHLLQQELTEAQKGFQDV 416 Query: 101 PESQETQQQVINKTTTSQTDAEKTPNEKR 129 T + S DAEK +K+ Sbjct: 417 EAQAATANHTVMALMAS-LDAEKAQGQKK 444 >3jz4_A Succinate-semialdehyde dehydrogenase [NADP+]; tetramer, NADP binding, oxidoreductase; HET: NAP; 2.30A {Escherichia coli} Length = 481 Score = 25.8 bits (57), Expect = 5.3 Identities = 8/45 (17%), Positives = 17/45 (37%), Gaps = 9/45 (20%) Query: 45 EATQKAAEKAAEAARKA--------AEQAAEAAKKAAEKII-HKD 80 + A +AA +A A++ A + ++ H+D Sbjct: 43 KMGADETRAAIDAANRALPAWRALTAKERATILRNWFNLMMEHQD 87 >2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae M129} Length = 348 Score = 25.6 bits (55), Expect = 5.3 Identities = 8/49 (16%), Positives = 14/49 (28%) Query: 35 LAERGKALLDEATQKAAEKAAEAARKAAEQAAEAAKKAAEKIIHKDKKK 83 L E LL +K + + E + A+ A + Sbjct: 291 LTEATVNLLVNIQRKREQISREQVFNCLQAGKNQAQATARTTLALFYDG 339 >2b3f_A Glucose-binding protein; protein-carbohydrate complex, periplasmic binding protein, galactose, GBP, sugar binding protein; HET: GAL; 1.56A {Thermus thermophilus HB27} PDB: 2b3b_A* Length = 400 Score = 25.5 bits (54), Expect = 5.4 Identities = 10/47 (21%), Positives = 18/47 (38%) Query: 22 GQADPVAPPPPQTLAERGKALLDEATQKAAEKAAEAARKAAEQAAEA 68 G A P +++ G + + + AA AA+ A+Q Sbjct: 344 GSLVHGAVAPESFMSQFGTVMEIFLQTRNPQAAANAAQAIADQVGLG 390 >3lo7_A PBPA, penicillin-binding protein A; transpeptidase domain, cell membrane, cell shape, cell WALL biogenesis/degradation, membrane; 2.05A {Mycobacterium tuberculosis} Length = 483 Score = 25.5 bits (55), Expect = 5.5 Identities = 4/24 (16%), Positives = 9/24 (37%) Query: 43 LDEATQKAAEKAAEAARKAAEQAA 66 ++ Q+A A + + A Sbjct: 130 INPRIQQAGWDAMQQGCYGPCKGA 153 >3crj_A Transcription regulator; APC88200, TETR, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.60A {Haloarcula marismortui atcc 43049} Length = 199 Score = 25.6 bits (55), Expect = 5.6 Identities = 5/44 (11%), Positives = 20/44 (45%), Gaps = 2/44 (4%) Query: 24 ADPVAPPPPQTLAERGKALLDEATQKAAEKAAEAA--RKAAEQA 65 ++ +A P +T +++ + ++ + E ++ A++ Sbjct: 1 SNAMAGPSDRTFSDQTEEIMQATYRALREHGYADLTIQRIADEY 44 >3ifg_A Succinate-semialdehyde dehydrogenase (NADP+); niaid,.infectious disease, ssgcid; 2.70A {Burkholderia pseudomallei 1710B} PDB: 3ifh_Q Length = 484 Score = 25.5 bits (55), Expect = 5.6 Identities = 7/40 (17%), Positives = 16/40 (40%), Gaps = 8/40 (20%) Query: 45 EATQKAAEKAAEAARKA--------AEQAAEAAKKAAEKI 76 + +A EAA+ A A++ A ++ + + Sbjct: 46 KMGAAETARAIEAAQAAWAGWRMKTAKERAAILRRWFDLV 85 Score = 24.7 bits (53), Expect = 8.8 Identities = 8/33 (24%), Positives = 13/33 (39%) Query: 43 LDEATQKAAEKAAEAARKAAEQAAEAAKKAAEK 75 D AT ++ + +A EAA+ A Sbjct: 33 FDPATGESLGTVPKMGAAETARAIEAAQAAWAG 65 >1o04_A Aldehyde dehydrogenase, mitochondrial precursor; ALDH, NAD, NADH, isomerization, oxidoreductase; HET: NAD; 1.42A {Homo sapiens} SCOP: c.82.1.1 PDB: 1nzw_A* 3inl_A* 3inj_A* 1nzz_A* 1o00_A* 1nzx_A* 1o01_A* 1o05_A 1of7_A* 1o02_A* 1zum_A 2onm_A* 2onp_A* 2onn_A 2ono_A* 2vle_A* 1cw3_A* 1ag8_A 1a4z_A Length = 500 Score = 25.7 bits (56), Expect = 5.7 Identities = 8/31 (25%), Positives = 15/31 (48%) Query: 45 EATQKAAEKAAEAARKAAEQAAEAAKKAAEK 75 E ++ +KA +AAR A + + + A Sbjct: 53 EGDKEDVDKAVKAARAAFQLGSPWRRMDASH 83 >1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A Length = 407 Score = 25.5 bits (55), Expect = 5.8 Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 2/42 (4%) Query: 33 QTLAERGKALLDEATQKAAEKAAEAARKAAEQAAEAAKKAAE 74 Q L + G E +A EAA AA++ AE A Sbjct: 340 QHLIKIG--HWSEEEHQATTAEFEAAVIAAQKEAEQYGTLAN 379 >2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.85A {Pyrococcus horikoshii OT3} SCOP: d.81.4.1 PDB: 2dma_A Length = 198 Score = 25.4 bits (55), Expect = 6.1 Identities = 16/78 (20%), Positives = 34/78 (43%), Gaps = 3/78 (3%) Query: 40 KALLDEATQKAAEKAAEAARKAAEQAAEA---AKKAAEKIIHKDKKKPKENQEVNEVPVA 96 + + EA +K EA ++A + EA A+ AE II + K + + ++ Sbjct: 9 QEINKEAERKIEYILNEARQQAEKIKEEARRNAEAKAEWIIRRAKTQAELEKQRIIANAR 68 Query: 97 ANIEPESQETQQQVINKT 114 + + Q+++I+ Sbjct: 69 LEVRRKRLAIQEEIISSV 86 >3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A* Length = 484 Score = 25.5 bits (55), Expect = 6.1 Identities = 9/72 (12%), Positives = 23/72 (31%), Gaps = 3/72 (4%) Query: 54 AAEAARKAAEQAAE---AAKKAAEKIIHKDKKKPKENQEVNEVPVAANIEPESQETQQQV 110 A+ + + E K + KK + + + +E+P E+ + + Sbjct: 41 EADKKWRRTQFLTEASKKLINICSKAVGAKKKAKEADGDTSEIPPQVKEAYENGTLKGEQ 100 Query: 111 INKTTTSQTDAE 122 + + Q Sbjct: 101 VEQLCVLQLKQL 112 >2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, X-RAY diffraction, glycolysis, magnesium, metal-binding, oxidoreductase; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* Length = 886 Score = 25.2 bits (54), Expect = 6.4 Identities = 10/37 (27%), Positives = 11/37 (29%), Gaps = 3/37 (8%) Query: 51 AEKAAEAARKAAEQAAEAAKKAAEKIIHK---DKKKP 84 A AA + E KK I K D K Sbjct: 845 ASYVVVAALGELAKRGEIDKKVVADAIAKFNIDADKV 881 >3i44_A Aldehyde dehydrogenase; oxidoreductase, structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Bartonella henselae} Length = 497 Score = 25.3 bits (55), Expect = 6.5 Identities = 12/72 (16%), Positives = 23/72 (31%), Gaps = 18/72 (25%) Query: 45 EATQKAAEKAAEAARKA--------AEQAAEAAKKAAE----------KIIHKDKKKPKE 86 + + A+KA AA+KA + +K E K I + P + Sbjct: 59 LGSTRDADKAINAAKKAFQTWKTTSPHERLGFVEKILEIYEKRSSDMAKTISMEMGAPID 118 Query: 87 NQEVNEVPVAAN 98 + ++ Sbjct: 119 MALNAQTATGSS 130 >3b8b_A CYSQ, sulfite synthesis pathway protein; 3'-phosphoadenosine-5'-phosphosulfate (PAPS) 3'-phosphatase, structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} Length = 292 Score = 25.3 bits (54), Expect = 6.5 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%) Query: 59 RKAAEQAAEAAKKAAEKIIHKDKKKPKENQEVNE 92 + A A +AA KA EKI+ + PK + E+ Sbjct: 21 QSNAMAAIDAALKAGEKIL-SIYEDPKSDFEIER 53 >1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding site, hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B* Length = 498 Score = 25.3 bits (55), Expect = 6.5 Identities = 11/30 (36%), Positives = 13/30 (43%), Gaps = 2/30 (6%) Query: 31 PPQTLAERGKALLDEATQKAAEKAAEAARK 60 P Q G +DEAT KA E+ K Sbjct: 470 PEQAFYLVGN--IDEATAKAMNLEMESKLK 497 >1ez0_A ALDH, aldehyde dehydrogenase; nucleotide binding domain, NADP+, oxidoreductase; HET: NAP; 2.10A {Vibrio harveyi} SCOP: c.82.1.1 PDB: 1eyy_A* Length = 510 Score = 25.1 bits (54), Expect = 6.9 Identities = 8/40 (20%), Positives = 14/40 (35%), Gaps = 8/40 (20%) Query: 45 EATQKAAEKAAEAARKA--------AEQAAEAAKKAAEKI 76 T+ +AA AA K + A + A ++ Sbjct: 26 VHTEVEVNQAATAAAKVARDFRRLNNSKRASLLRTIASEL 65 >2d4e_A 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; HPCC, structural genomics, NPPSFA; HET: NAD; 2.10A {Thermus thermophilus HB8} Length = 515 Score = 25.0 bits (54), Expect = 7.2 Identities = 11/33 (33%), Positives = 19/33 (57%) Query: 43 LDEATQKAAEKAAEAARKAAEQAAEAAKKAAEK 75 LD AT + AA + ++AA+AA +A ++ Sbjct: 47 LDPATNEVLGVAARGGEREVDRAAKAAHEAFQR 79 Score = 24.6 bits (53), Expect = 9.4 Identities = 9/40 (22%), Positives = 18/40 (45%), Gaps = 8/40 (20%) Query: 45 EATQKAAEKAAEAARKA--------AEQAAEAAKKAAEKI 76 ++ ++AA+AA +A A++ + AE I Sbjct: 60 RGGEREVDRAAKAAHEAFQRWSRTKAKERKRYLLRIAELI 99 >3iwj_A Putative aminoaldehyde dehydrogenase; rossmann fold, dimer, betaine aldehyde dehydrogenase, NAD, oxidoreductase; HET: NAD; 2.15A {Pisum sativum} PDB: 3iwk_A* Length = 503 Score = 25.0 bits (54), Expect = 7.2 Identities = 10/38 (26%), Positives = 16/38 (42%) Query: 43 LDEATQKAAEKAAEAARKAAEQAAEAAKKAAEKIIHKD 80 ++ ATQ A ++ + A AAK A + D Sbjct: 28 INPATQNIIGDIPAATKEDVDVAVAAAKTALTRNKGAD 65 >1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2 Length = 390 Score = 25.0 bits (54), Expect = 7.3 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%) Query: 37 ERGKALLDEATQKAAEKAAEAARKAAE 63 KA+ ++A + A +A EAARKA E Sbjct: 364 RIAKAVYEKALRAA--QAREAARKARE 388 >2ve5_A BADH, betaine aldehyde dehydrogenase; aldehyde oxidation, NAD, NADP complex, oxidoreductase; HET: NAP CSO; 2.10A {Pseudomonas aeruginosa} PDB: 2wme_A* Length = 490 Score = 25.0 bits (54), Expect = 7.3 Identities = 7/40 (17%), Positives = 19/40 (47%), Gaps = 8/40 (20%) Query: 45 EATQKAAEKAAEAARKA--------AEQAAEAAKKAAEKI 76 A+++ E+A ++A + A Q + ++A + + Sbjct: 40 RASREDVERAVQSAVEGQKVWAAMTAMQRSRILRRAVDIL 79 >1euh_A NADP dependent non phosphorylating glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase; 1.82A {Streptococcus mutans} SCOP: c.82.1.1 PDB: 1qi6_A 2euh_A* 2id2_A* 2qe0_A* 2esd_A* 1qi1_A* Length = 475 Score = 25.2 bits (54), Expect = 7.4 Identities = 6/40 (15%), Positives = 14/40 (35%), Gaps = 8/40 (20%) Query: 45 EATQKAAEKAAEAARKA--------AEQAAEAAKKAAEKI 76 + + + +A+KA + A K A+ + Sbjct: 36 AMSTEEVDYVYASAKKAQPAWRALSYIERAAYLHKVADIL 75 >3my7_A Alcohol dehydrogenase/acetaldehyde dehydrogenase; ACDH, PSI, MCSG, structural genomics, midwest center for STR genomics; 2.30A {Vibrio parahaemolyticus} Length = 452 Score = 25.1 bits (54), Expect = 7.5 Identities = 5/39 (12%), Positives = 10/39 (25%), Gaps = 8/39 (20%) Query: 46 ATQKAAEKAAEAARKA--------AEQAAEAAKKAAEKI 76 + +KA EQ + + A+ Sbjct: 4 TNMAELDAMIARVKKAQEEFATYSQEQVDKIFRAASLAA 42 >1xrs_A D-lysine 5,6-aminomutase alpha subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'- deoxyadenosine, radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.1.19.4 Length = 516 Score = 25.1 bits (55), Expect = 7.6 Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 8/61 (13%) Query: 32 PQTLAER---GKALLDEATQKAAEKAAEAARKAAEQAAE---AAKKAAEKII--HKDKKK 83 PQ +A+ G+ L + K + A A++ E + E + DK Sbjct: 91 PQEIAQAISAGELDLTKLPMKDLFEVKTKALSMAKETVEKIKNNRSIRESRFEEYGDKSG 150 Query: 84 P 84 P Sbjct: 151 P 151 >1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1 Length = 179 Score = 25.0 bits (54), Expect = 7.7 Identities = 10/37 (27%), Positives = 17/37 (45%) Query: 47 TQKAAEKAAEAARKAAEQAAEAAKKAAEKIIHKDKKK 83 + A + AARK AE + AA+ K + ++ Sbjct: 5 NRDPAATSVAAARKGAEPSGGAARGPVGKRLQQELMT 41 >1wiw_A Glucose-6-phosphate isomerase like protein; riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.80.1.1 Length = 290 Score = 24.9 bits (54), Expect = 7.8 Identities = 7/51 (13%), Positives = 13/51 (25%) Query: 27 VAPPPPQTLAERGKALLDEATQKAAEKAAEAARKAAEQAAEAAKKAAEKII 77 A P P G+ + E E + + A ++ Sbjct: 33 EAYPGPHAALGYGEGQFAALLSGLPDWGEEGTLFLLEGGYDLGEAAGMALL 83 >2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana} Length = 103 Score = 24.9 bits (54), Expect = 8.5 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 2/34 (5%) Query: 59 RKAAEQAAEAAKKAAEKIIHKDKKKPKENQEVNE 92 RKAAEQ+A A+ A ++ + +Q V+E Sbjct: 70 RKAAEQSA--AEVALRELAKSSELSQCVSQPVHE 101 >2opt_A Actii protein; helical protein, TETR family, APO-protein, transcriptional repressor; 2.05A {Streptomyces coelicolor} PDB: 3b6a_A* 3b6c_A* Length = 234 Score = 24.8 bits (53), Expect = 8.6 Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 1/46 (2%) Query: 24 ADPVAPPPPQTLAERG-KALLDEATQKAAEKAAEAARKAAEQAAEA 68 A P+ E G + ++ A E A + R A AE+ Sbjct: 189 AGPITSLDSDRRFELGLEIIIAGLLAGAGEAADDQVRTAGSPPAES 234 >1q7z_A 5-methyltetrahydrofolate S-homocysteine methyltransferase; methionine, cobalamin, vitamin B12; 1.70A {Thermotoga maritima} SCOP: c.1.21.2 c.1.26.1 PDB: 1q7q_A 1q7m_A 1q85_A 1q8a_A 1q8j_A* 3bof_A 3bol_A Length = 566 Score = 25.0 bits (54), Expect = 8.9 Identities = 8/38 (21%), Positives = 13/38 (34%), Gaps = 3/38 (7%) Query: 32 PQTLAERGKALLDEATQKAAEKAAEAARKAAEQAAEAA 69 L + G L++ A AR+AA + Sbjct: 70 RMKLRKHG---LEDKLDPIVRNAVRIARRAAGEKLVFG 104 >2go5_4 Ribosomal protein L23; SR, SRP, ribosome, translation/RNA complex; 7.40A {Triticum SP} PDB: 2j37_4 Length = 152 Score = 24.8 bits (54), Expect = 9.2 Identities = 10/33 (30%), Positives = 13/33 (39%) Query: 51 AEKAAEAARKAAEQAAEAAKKAAEKIIHKDKKK 83 A K A A + A+ A KA + K K Sbjct: 2 APKVAVAKKGDAKAQAAKVAKAVKSGSIKKTAK 34 >3ek1_A Aldehyde dehydrogenase; ssgcid, oxidoreductase, structural genomics; HET: MES; 2.10A {Brucella melitensis biovar ABORTUS2308} Length = 504 Score = 24.9 bits (54), Expect = 9.4 Identities = 8/40 (20%), Positives = 17/40 (42%), Gaps = 8/40 (20%) Query: 45 EATQKAAEKAAEAARKA--------AEQAAEAAKKAAEKI 76 + ++A +A+ KA A++ A +K + I Sbjct: 66 SLSVATIKEAIDASAKALSGWAAKTAKERAGILRKWFDLI 105 >3l52_A Orotidine 5'-phosphate decarboxylase; TIM barrel, structural genomics, PSI-2, protein structure initiative; 1.35A {Streptomyces avermitilis} Length = 284 Score = 24.7 bits (53), Expect = 9.5 Identities = 7/23 (30%), Positives = 10/23 (43%) Query: 50 AAEKAAEAARKAAEQAAEAAKKA 72 A R AA++ AE + A Sbjct: 259 RHGPDVRALRTAADRFAEEIRAA 281 >2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} Length = 140 Score = 24.6 bits (53), Expect = 9.5 Identities = 10/44 (22%), Positives = 19/44 (43%) Query: 34 TLAERGKALLDEATQKAAEKAAEAARKAAEQAAEAAKKAAEKII 77 +L+ G+A L+ A E +A + Q E + ++I Sbjct: 97 SLSPAGRAELEAGLAAAREINRQALAPLSLQEQETLRGLLARLI 140 >2jpu_A ORF C02003 protein; solution structure, SSR10, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus} PDB: 2q00_A Length = 129 Score = 24.8 bits (54), Expect = 9.7 Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 2/33 (6%) Query: 53 KAAEAARKAAEQA--AEAAKKAAEKIIHKDKKK 83 +A E KAAE+A + ++I + K K Sbjct: 25 QACEKYYKAAEEAIKLLVIENNLKEITNNVKNK 57 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.299 0.115 0.295 Gapped Lambda K H 0.267 0.0528 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,143,331 Number of extensions: 47380 Number of successful extensions: 799 Number of sequences better than 10.0: 1 Number of HSP's gapped: 728 Number of HSP's successfully gapped: 238 Length of query: 159 Length of database: 5,693,230 Length adjustment: 85 Effective length of query: 74 Effective length of database: 3,632,490 Effective search space: 268804260 Effective search space used: 268804260 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 43 (21.7 bits) S2: 53 (24.7 bits)