BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780909|ref|YP_003065322.1| hypothetical protein
CLIBASIA_04040 [Candidatus Liberibacter asiaticus str. psy62]
         (159 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780909|ref|YP_003065322.1| hypothetical protein CLIBASIA_04040 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 159

 Score =  313 bits (801), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 159/159 (100%), Positives = 159/159 (100%)

Query: 1   MKRLKYQIILLSLLSTTMASCGQADPVAPPPPQTLAERGKALLDEATQKAAEKAAEAARK 60
           MKRLKYQIILLSLLSTTMASCGQADPVAPPPPQTLAERGKALLDEATQKAAEKAAEAARK
Sbjct: 1   MKRLKYQIILLSLLSTTMASCGQADPVAPPPPQTLAERGKALLDEATQKAAEKAAEAARK 60

Query: 61  AAEQAAEAAKKAAEKIIHKDKKKPKENQEVNEVPVAANIEPESQETQQQVINKTTTSQTD 120
           AAEQAAEAAKKAAEKIIHKDKKKPKENQEVNEVPVAANIEPESQETQQQVINKTTTSQTD
Sbjct: 61  AAEQAAEAAKKAAEKIIHKDKKKPKENQEVNEVPVAANIEPESQETQQQVINKTTTSQTD 120

Query: 121 AEKTPNEKRQGTTDGINNQSNATNDPSSKDKIAENTKED 159
           AEKTPNEKRQGTTDGINNQSNATNDPSSKDKIAENTKED
Sbjct: 121 AEKTPNEKRQGTTDGINNQSNATNDPSSKDKIAENTKED 159


>gi|254780918|ref|YP_003065331.1| glycosyl transferase family protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 623

 Score = 23.9 bits (50), Expect = 1.5,   Method: Composition-based stats.
 Identities = 12/22 (54%), Positives = 13/22 (59%)

Query: 134 DGINNQSNATNDPSSKDKIAEN 155
           D INN  NA    S +DKI EN
Sbjct: 172 DAINNNPNAEIIYSDEDKINEN 193


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.299    0.115    0.295 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,449
Number of Sequences: 1233
Number of extensions: 2488
Number of successful extensions: 15
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 159
length of database: 328,796
effective HSP length: 67
effective length of query: 92
effective length of database: 246,185
effective search space: 22649020
effective search space used: 22649020
T: 11
A: 40
X1: 17 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.7 bits)
S2: 35 (18.1 bits)