HHsearch alignment for GI: 254780911 and conserved domain: PRK11589
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional.
Probab=98.56 E-value=4.6e-07 Score=70.14 Aligned_cols=81 Identities=10% Similarity=0.141 Sum_probs=66.5
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEEC----CCCCEEEEEEEEE--CCCCHHHHHHHHHHHHCCCCCCEE
Q ss_conf 4999998599876688899999857981897344432----4368899999997--288527779888987400232020
Q gi|254780911|r 3 SYILTITCPSNEEITSIIPDYLSTQGCNILDISQFND----LDTSKLFMRISFV--FNTCMKLFIADFQPIVQQFSLQYS 76 (288)
Q Consensus 3 ~~iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D----~~~~~FFmRi~f~--~~~~~~~l~~~f~~ia~~~~m~~~ 76 (288)
T Consensus 95 ~~~v~v~g~D~PGIV~~vt~~la~~~InI~~L~T~t~~A~~~~~~~f~~~~t~~iPa~~~i~~L~~~f~~lc~eLnld~~ 174 (183)
T PRK11589 95 TVWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERAAQLHIQITAHSPASQDAANIEQAFKALCTELNAQGS 174 (183)
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHCCCCHHHHEEEEECCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCEEE
T ss_conf 59999997898988999999999869987652221144999997369999998079989999999999999998298389
Q ss_pred CCCCCCC
Q ss_conf 1244565
Q gi|254780911|r 77 IRNTKEA 83 (288)
Q Consensus 77 i~~~~~~ 83 (288)
T Consensus 175 i~~v~~~ 181 (183)
T PRK11589 175 INVVNYS 181 (183)
T ss_pred EEECCCC
T ss_conf 9954788