HHsearch alignment for GI: 254780911 and conserved domain: PRK11589

>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional.
Probab=98.56  E-value=4.6e-07  Score=70.14  Aligned_cols=81  Identities=10%  Similarity=0.141  Sum_probs=66.5

Q ss_pred             EEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEEC----CCCCEEEEEEEEE--CCCCHHHHHHHHHHHHCCCCCCEE
Q ss_conf             4999998599876688899999857981897344432----4368899999997--288527779888987400232020
Q gi|254780911|r    3 SYILTITCPSNEEITSIIPDYLSTQGCNILDISQFND----LDTSKLFMRISFV--FNTCMKLFIADFQPIVQQFSLQYS   76 (288)
Q Consensus         3 ~~iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D----~~~~~FFmRi~f~--~~~~~~~l~~~f~~ia~~~~m~~~   76 (288)
T Consensus        95 ~~~v~v~g~D~PGIV~~vt~~la~~~InI~~L~T~t~~A~~~~~~~f~~~~t~~iPa~~~i~~L~~~f~~lc~eLnld~~  174 (183)
T PRK11589         95 TVWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERAAQLHIQITAHSPASQDAANIEQAFKALCTELNAQGS  174 (183)
T ss_pred             EEEEEEEECCCCCHHHHHHHHHHHCCCCHHHHEEEEECCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCEEE
T ss_conf             59999997898988999999999869987652221144999997369999998079989999999999999998298389


Q ss_pred             CCCCCCC
Q ss_conf             1244565
Q gi|254780911|r   77 IRNTKEA   83 (288)
Q Consensus        77 i~~~~~~   83 (288)
T Consensus       175 i~~v~~~  181 (183)
T PRK11589        175 INVVNYS  181 (183)
T ss_pred             EEECCCC
T ss_conf             9954788