HHsearch alignment for GI: 254780911 and conserved domain: cd02009

>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=92.26  E-value=0.51  Score=27.96  Aligned_cols=71  Identities=24%  Similarity=0.258  Sum_probs=43.7

Q ss_pred             EEEECCCCC---CHHHHHHHHCCCCCEEEEEEEEECCH---------------------------HHHHHHHHCCCCEEE
Q ss_conf             999708867---98999986204674158999997734---------------------------667778860997474
Q gi|254780911|r   87 LILVSQPDH---CLNDLLYRWNIGTLALNIVGVVSNHT---------------------------THKKLVENYQLPFYY  136 (288)
Q Consensus        87 ailvSg~gs---nL~~Ll~~~~~g~L~~eI~~VISN~~---------------------------d~~~lA~~~gIP~~~  136 (288)
T Consensus        71 vv~i~GDgsf~~d~~eL~t~~~~-~~pv--~ivV~NN~GggIf~~l~~~~~~~~~~~~~~tp~~~df~~lA~a~G~~~~~  147 (175)
T cd02009          71 TVLLTGDLSFLHDLNGLLLGKQE-PLNL--TIVVINNNGGGIFSLLPQASFEDEFERLFGTPQGLDFEHLAKAYGLEYRR  147 (175)
T ss_pred             EEEEEECHHHHCCHHHHHHHHHC-CCCE--EEEEEECCCCHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHCCCCEEE
T ss_conf             89997026866167899999866-9982--99999489833999987750368643121577766899999986997798


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCEEEE
Q ss_conf             1687335277678999997333940999
Q gi|254780911|r  137 LPMTEQNKIESEQKLINIIEKNNVELMI  164 (288)
Q Consensus       137 i~~~~~~k~~~e~~il~~l~~~~~Dliv  164 (288)
T Consensus       148 v----~~~~el~~al~~~~~~~gp~lIE  171 (175)
T cd02009         148 V----SSLDELEQALESALAQDGPHVIE  171 (175)
T ss_pred             E----CCHHHHHHHHHHHHHCCCCEEEE
T ss_conf             4----99999999999998389989999