HHsearch alignment for GI: 254780911 and conserved domain: cd02009
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=92.26 E-value=0.51 Score=27.96 Aligned_cols=71 Identities=24% Similarity=0.258 Sum_probs=43.7
Q ss_pred EEEECCCCC---CHHHHHHHHCCCCCEEEEEEEEECCH---------------------------HHHHHHHHCCCCEEE
Q ss_conf 999708867---98999986204674158999997734---------------------------667778860997474
Q gi|254780911|r 87 LILVSQPDH---CLNDLLYRWNIGTLALNIVGVVSNHT---------------------------THKKLVENYQLPFYY 136 (288)
Q Consensus 87 ailvSg~gs---nL~~Ll~~~~~g~L~~eI~~VISN~~---------------------------d~~~lA~~~gIP~~~ 136 (288)
T Consensus 71 vv~i~GDgsf~~d~~eL~t~~~~-~~pv--~ivV~NN~GggIf~~l~~~~~~~~~~~~~~tp~~~df~~lA~a~G~~~~~ 147 (175)
T cd02009 71 TVLLTGDLSFLHDLNGLLLGKQE-PLNL--TIVVINNNGGGIFSLLPQASFEDEFERLFGTPQGLDFEHLAKAYGLEYRR 147 (175)
T ss_pred EEEEEECHHHHCCHHHHHHHHHC-CCCE--EEEEEECCCCHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHCCCCEEE
T ss_conf 89997026866167899999866-9982--99999489833999987750368643121577766899999986997798
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 1687335277678999997333940999
Q gi|254780911|r 137 LPMTEQNKIESEQKLINIIEKNNVELMI 164 (288)
Q Consensus 137 i~~~~~~k~~~e~~il~~l~~~~~Dliv 164 (288)
T Consensus 148 v----~~~~el~~al~~~~~~~gp~lIE 171 (175)
T cd02009 148 V----SSLDELEQALESALAQDGPHVIE 171 (175)
T ss_pred E----CCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 4----99999999999998389989999