HHsearch results for GI: 254780911 and protein with PDBid: 1u8s_A
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=99.48 E-value=1.6e-12 Score=106.67 Aligned_cols=157 Identities=11% Similarity=0.085 Sum_probs=100.0
Q ss_pred CCE-EEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEECCCCHHHHHHHHHHHHCCCCCCEECCC
Q ss_conf 964-9999985998766888999998579818973444324368899999997288527779888987400232020124
Q gi|254780911|r 1 MSS-YILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFNTCMKLFIADFQPIVQQFSLQYSIRN 79 (288)
Q Consensus 1 M~~-~iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~FFmRi~f~~~~~~~~l~~~f~~ia~~~~m~~~i~~ 79 (288)
|++ +++|+.|||||||+|+||++|+++||||++++|++..+...+.|+++++. ...+.++..+..+.+++++.+.+..
T Consensus 3 M~~~lvItv~g~DrpGiva~ia~~l~~~g~ni~ds~~~~~~~~f~~~~~v~~~~-~~~~~l~~~l~~l~~~~~~~~~~~~ 81 (192)
T 1u8s_A 3 LTQHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSP-SNITRVETTLPLLGQQHDLITMMKR 81 (192)
T ss_dssp CCEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEECH-HHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred CCEEEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEEECCEEEEEEEEECCC-HHHHHHHHHHHHHHHHHCCEEEEEE
T ss_conf 632899999935998599999999998799699727889998489999971481-1367999999998775274378897
Q ss_pred ----CCCCCCEEEEECCCCCCHHHHHH----HHCCCCCEEEEE-EEEECCHHHHHHHHHCCCCEEE------CCCCCCCH
Q ss_conf ----45655389997088679899998----620467415899-9997734667778860997474------16873352
Q gi|254780911|r 80 ----TKEATKTLILVSQPDHCLNDLLY----RWNIGTLALNIV-GVVSNHTTHKKLVENYQLPFYY------LPMTEQNK 144 (288)
Q Consensus 80 ----~~~~~riailvSg~gsnL~~Ll~----~~~~g~L~~eI~-~VISN~~d~~~lA~~~gIP~~~------i~~~~~~k 144 (288)
.......-..++-.|++.-.|++ ...+-.++++-. .-....+.. ..|.|.++ +| ...+.
T Consensus 82 ~~~~~~~~~~~~~~v~v~g~DrpGlL~~It~~la~~~inI~~l~~~t~~~~~~-----~~~~~~f~~~~~i~vp-~~~d~ 155 (192)
T 1u8s_A 82 TSPHDHQTHAYTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKL-----HSEQNQFHIAISARVD-SGCNL 155 (192)
T ss_dssp ECCCCCCCCSEEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC-------------CEEEEEEEEEEC-TTSCH
T ss_pred CCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCC-----CCCCCEEEEEEEEECC-CCCCH
T ss_conf 15444467751699999951762689999999986799700589984267766-----7778579999999579-99999
Q ss_pred HHHHHHHHHHHHHCCCEEEE
Q ss_conf 77678999997333940999
Q gi|254780911|r 145 IESEQKLINIIEKNNVELMI 164 (288)
Q Consensus 145 ~~~e~~il~~l~~~~~Dliv 164 (288)
++.++++.+++++.++|..+
T Consensus 156 ~~l~~~L~~L~~el~vDi~i 175 (192)
T 1u8s_A 156 MQLQEEFDALCTALDVQGSL 175 (192)
T ss_dssp HHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHHHHHCCEEEE
T ss_conf 99999999999985967999