HHsearch results for GI: 254780911 and protein with PDBid: 1zgh_A

>1zgh_A Methionyl-tRNA formyltransferase; southeast collaboratory for structural genomics, PSI, protein structure initiative, secsg; 2.05A {Clostridium thermocellum atcc 27405} SCOP: b.46.1.1 c.65.1.1
Probab=99.87  E-value=6.8e-22  Score=172.04  Aligned_cols=160  Identities=15%  Similarity=0.207  Sum_probs=119.2

Q ss_pred             CCCCCHHHHHHHHCCCCCEEEEEEEEECCH----HHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEECC
Q ss_conf             886798999986204674158999997734----6677788609974741687335277678999997333940999827
Q gi|254780911|r   92 QPDHCLNDLLYRWNIGTLALNIVGVVSNHT----THKKLVENYQLPFYYLPMTEQNKIESEQKLINIIEKNNVELMILAR  167 (288)
Q Consensus        92 g~gsnL~~Ll~~~~~g~L~~eI~~VISN~~----d~~~lA~~~gIP~~~i~~~~~~k~~~e~~il~~l~~~~~DlivLAg  167 (288)
                      .+|+++..|..+..  ..+.   ++.|.++    ....+.++....+...-..  ++.+   ..++.++..+||+|+++|
T Consensus        16 ~r~s~~~~~~~k~~--~~~~---i~~~~k~w~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~l~~~~pd~i~~~~   85 (260)
T 1zgh_A           16 PRGSQSTSLYKKAG--LMNI---IIATTKSWNIKNAQKFKKENESKYNTTIIT--NKDE---LTFEKVKLINPEYILFPH   85 (260)
T ss_dssp             ----------------CEEE---EEECCSHHHHHHHHHHHHHTTTTEEEEEEC--SGGG---CCHHHHHHHCCSEEEESS
T ss_pred             CCHHHHHHHHHHCC--CCEE---EEEECCHHHHHHHHHHHHHHCCCCEEEEEC--CCCH---HHHHHHHHCCCCEEEEEC
T ss_conf             52577776987446--4309---999331656899999998614222268861--8468---789999853989999827


Q ss_pred             CCCCCCHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEEEEEEECCCCCCCEEEEEEEECCCCCCHHHHHH
Q ss_conf             67548877863277847961336676789999589997426837622577530556888344444665188889999999
Q gi|254780911|r  168 YMQILSDHLCHKMTGRIINIHHSFLPSFKGANPYKQAYEYGVKIIGATAHYAICELDAGPIIEQDVVRVTHAQTIEDYIA  247 (288)
Q Consensus       168 ymril~~~~~~~~~~~iiNiHpslLP~f~G~~~y~~A~~~Gvk~~G~TvH~V~~~lD~GpII~Q~~~~v~~~dt~~~l~~  247 (288)
                      |++|+++++++.|  ++||+|||+||.|+|++|+.+|+.+|.+.+|+|+|+|++++|+||||.|..+++.  +|.+++..
T Consensus        86 ~~~ii~~~il~~~--~~in~H~s~LP~~rG~~p~~~~i~~~~~~~g~t~~~~~~~iD~G~Ii~q~~i~i~--~~~~~l~~  161 (260)
T 1zgh_A           86 WSWIIPKEIFENF--TCVVFHMTDLPFGRGGSPLQNLIERGIKKTKISAIKVDGGIDTGDIFFKRDLDLY--GTAEEIFM  161 (260)
T ss_dssp             CCSCCCHHHHTTS--CEEEEESSCTTTTEESCHHHHHHHTTCCEEEEEEEECCSSSSCSCEEEEEEEECC--SCHHHHHH
T ss_pred             CCCCCCHHHHHHC--CEEEECCCCCCCCCCCCHHHHHHHCCCCCCCEEEEEECCCCCCCCCEEEEEEEEC--CCHHHHHH
T ss_conf             0011389999539--9799826737577899988999974555463489973688758998458889865--87146789


Q ss_pred             HHHHHHHHHHHHHHHHHHCCE
Q ss_conf             999999999999999987691
Q gi|254780911|r  248 IGKNIEAKVLTKAVNAHIQQR  268 (288)
Q Consensus       248 ~~~~~E~~~l~~av~~~~e~r  268 (288)
                      +   +...++...+..+..+.
T Consensus       162 k---~~~~~~~~li~~i~~~~  179 (260)
T 1zgh_A          162 R---ASKIIFNDMIPELLTKR  179 (260)
T ss_dssp             H---HHHHHHHTHHHHHHHHC
T ss_pred             H---HHHHHHHHHHHHHHCCC
T ss_conf             9---99999998888875589