HHsearch results for GI: 254780911 and protein with PDBid: 1zgh_A
>1zgh_A Methionyl-tRNA formyltransferase; southeast collaboratory for structural genomics, PSI, protein structure initiative, secsg; 2.05A {Clostridium thermocellum atcc 27405} SCOP: b.46.1.1 c.65.1.1
Probab=99.87 E-value=6.8e-22 Score=172.04 Aligned_cols=160 Identities=15% Similarity=0.207 Sum_probs=119.2
Q ss_pred CCCCCHHHHHHHHCCCCCEEEEEEEEECCH----HHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEECC
Q ss_conf 886798999986204674158999997734----6677788609974741687335277678999997333940999827
Q gi|254780911|r 92 QPDHCLNDLLYRWNIGTLALNIVGVVSNHT----THKKLVENYQLPFYYLPMTEQNKIESEQKLINIIEKNNVELMILAR 167 (288)
Q Consensus 92 g~gsnL~~Ll~~~~~g~L~~eI~~VISN~~----d~~~lA~~~gIP~~~i~~~~~~k~~~e~~il~~l~~~~~DlivLAg 167 (288)
.+|+++..|..+.. ..+. ++.|.++ ....+.++....+...-.. ++.+ ..++.++..+||+|+++|
T Consensus 16 ~r~s~~~~~~~k~~--~~~~---i~~~~k~w~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~l~~~~pd~i~~~~ 85 (260)
T 1zgh_A 16 PRGSQSTSLYKKAG--LMNI---IIATTKSWNIKNAQKFKKENESKYNTTIIT--NKDE---LTFEKVKLINPEYILFPH 85 (260)
T ss_dssp ----------------CEEE---EEECCSHHHHHHHHHHHHHTTTTEEEEEEC--SGGG---CCHHHHHHHCCSEEEESS
T ss_pred CCHHHHHHHHHHCC--CCEE---EEEECCHHHHHHHHHHHHHHCCCCEEEEEC--CCCH---HHHHHHHHCCCCEEEEEC
T ss_conf 52577776987446--4309---999331656899999998614222268861--8468---789999853989999827
Q ss_pred CCCCCCHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEEEEEEECCCCCCCEEEEEEEECCCCCCHHHHHH
Q ss_conf 67548877863277847961336676789999589997426837622577530556888344444665188889999999
Q gi|254780911|r 168 YMQILSDHLCHKMTGRIINIHHSFLPSFKGANPYKQAYEYGVKIIGATAHYAICELDAGPIIEQDVVRVTHAQTIEDYIA 247 (288)
Q Consensus 168 ymril~~~~~~~~~~~iiNiHpslLP~f~G~~~y~~A~~~Gvk~~G~TvH~V~~~lD~GpII~Q~~~~v~~~dt~~~l~~ 247 (288)
|++|+++++++.| ++||+|||+||.|+|++|+.+|+.+|.+.+|+|+|+|++++|+||||.|..+++. +|.+++..
T Consensus 86 ~~~ii~~~il~~~--~~in~H~s~LP~~rG~~p~~~~i~~~~~~~g~t~~~~~~~iD~G~Ii~q~~i~i~--~~~~~l~~ 161 (260)
T 1zgh_A 86 WSWIIPKEIFENF--TCVVFHMTDLPFGRGGSPLQNLIERGIKKTKISAIKVDGGIDTGDIFFKRDLDLY--GTAEEIFM 161 (260)
T ss_dssp CCSCCCHHHHTTS--CEEEEESSCTTTTEESCHHHHHHHTTCCEEEEEEEECCSSSSCSCEEEEEEEECC--SCHHHHHH
T ss_pred CCCCCCHHHHHHC--CEEEECCCCCCCCCCCCHHHHHHHCCCCCCCEEEEEECCCCCCCCCEEEEEEEEC--CCHHHHHH
T ss_conf 0011389999539--9799826737577899988999974555463489973688758998458889865--87146789
Q ss_pred HHHHHHHHHHHHHHHHHHCCE
Q ss_conf 999999999999999987691
Q gi|254780911|r 248 IGKNIEAKVLTKAVNAHIQQR 268 (288)
Q Consensus 248 ~~~~~E~~~l~~av~~~~e~r 268 (288)
+ +...++...+..+..+.
T Consensus 162 k---~~~~~~~~li~~i~~~~ 179 (260)
T 1zgh_A 162 R---ASKIIFNDMIPELLTKR 179 (260)
T ss_dssp H---HHHHHHHTHHHHHHHHC
T ss_pred H---HHHHHHHHHHHHHHCCC
T ss_conf 9---99999998888875589