HHsearch results for GI: 254780911 and protein with PDBid: 2der_A

>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*

Probab=90.27  E-value=1  Score=24.30  Aligned_cols=56  Identities=14%  Similarity=0.270  Sum_probs=30.3

Q ss_pred             CCCCCEEEEECC-CCCCHHHHHHHHCCCCCEEEEEEEEE-CC---------------HHHHHHHHHCCCCEEECCCC
Q ss_conf             565538999708-86798999986204674158999997-73---------------46677788609974741687
Q gi|254780911|r   81 KEATKTLILVSQ-PDHCLNDLLYRWNIGTLALNIVGVVS-NH---------------TTHKKLVENYQLPFYYLPMT  140 (288)
Q Consensus        81 ~~~~riailvSg-~gsnL~~Ll~~~~~g~L~~eI~~VIS-N~---------------~d~~~lA~~~gIP~~~i~~~  140 (288)
                      +.++|++|..|| -+|...++|-+ +.|.   ++.+|.= |.               .+++.+|+..|||+++++..
T Consensus        15 ~~~kkV~V~mSGGVDSsvaa~lL~-~qG~---~V~gv~m~~~~~~~~~~~c~~~~d~~~a~~va~~LgIp~~~~d~~   87 (380)
T 2der_A           15 ETAKKVIVGMSGGVDSSVSAWLLQ-QQGY---QVEGLFMKNWEEDDGEEYCTAAADLADAQAVCDKLGIELHTVNFA   87 (380)
T ss_dssp             --CCEEEEECCSCSTTHHHHHHHH-TTCC---EEEEEEEECCCCCSHHHHHHHHHHHHHHHHHHHHHTCCEEEEECH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHH-HCCC---CEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECHH
T ss_conf             668879998778699999999999-7799---689999988768876678884678999999999849977994508