Query gi|254780912|ref|YP_003065325.1| hypothetical protein CLIBASIA_04055 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 68
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 33803
Date Wed Jun 1 18:30:08 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780912.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1cmk_I CAMP-dependent protein 15.1 39 0.0012 16.0 0.0 14 41-54 7-20 (26)
2 >1kdl_A YOPD protein; yersinia 14.4 91 0.0027 13.9 1.7 18 13-36 2-19 (26)
3 >1ofc_X ISWI protein; nuclear 12.2 1.1E+02 0.0034 13.4 2.1 28 23-50 62-89 (99)
4 >2p0w_A Histone acetyltransfer 11.3 33 0.00097 16.4 -1.3 36 9-46 17-52 (63)
5 >1q5z_A SIPA, SIPA; cell invas 10.3 93 0.0028 13.9 0.7 17 52-68 142-158 (177)
6 >2bde_A Cytosolic IMP-GMP spec 9.6 1.3E+02 0.0038 13.1 1.2 17 22-38 105-121 (157)
7 >2kix_A BM2 protein; channel, 8.9 1.5E+02 0.0045 12.7 2.2 19 4-22 3-21 (33)
8 >1rp4_A Hypothetical 65.0 kDa 8.4 1.4E+02 0.004 13.0 0.9 28 13-40 160-187 (256)
9 >2bbr_A Viral CAsp8 and FADD-l 7.4 1.8E+02 0.0052 12.3 1.7 27 10-36 48-74 (88)
10 >1n1f_A Interleukin-19; cytoki 7.2 1.8E+02 0.0053 12.3 1.9 46 10-55 88-142 (159)
No 1
>>1cmk_I CAMP-dependent protein kinase inhibitor, alpha form; phosphotransferase; HET: TPO SEP MYR; 2.90A {Homo sapiens} (I:)
Probab=15.14 E-value=39 Score=15.95 Aligned_cols=14 Identities=57% Similarity=0.653 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHCC
Q ss_conf 78765432231018
Q gi|254780912|r 41 KASVRAGARNAISN 54 (68)
Q Consensus 41 kasvragarnaisn 54 (68)
-||-|.|.||||..
T Consensus 7 iasgrtgrrnaihd 20 (26)
T 1cmk_I 7 IASGRTGRRNAIHD 20 (26)
T ss_pred HHCCCCCCHHHHHH
T ss_conf 78077542557999
No 2
>>1kdl_A YOPD protein; yersinia, amphipathic alpha helix, beta turn, structural protein; NMR {Synthetic} (A:)
Probab=14.45 E-value=91 Score=13.94 Aligned_cols=18 Identities=50% Similarity=0.724 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999997422
Q gi|254780912|r 13 SFMKSLLRSLELCSQIMQCVSKEK 36 (68)
Q Consensus 13 sfmksllrslelcsqimqcvskek 36 (68)
.|||..||-.| |.||...
T Consensus 2 nfmkdvlrlie------qyvssht 19 (26)
T 1kdl_A 2 NFMKDVLRLIE------QYVSSHT 19 (26)
T ss_dssp THHHHHHHHHH------HHTTTTC
T ss_pred CHHHHHHHHHH------HHHHHHH
T ss_conf 28999999999------9998726
No 3
>>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} (X:206-304)
Probab=12.15 E-value=1.1e+02 Score=13.38 Aligned_cols=28 Identities=7% Similarity=0.311 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999742200227876543223
Q gi|254780912|r 23 ELCSQIMQCVSKEKNTINKASVRAGARN 50 (68)
Q Consensus 23 elcsqimqcvskekntinkasvragarn 50 (68)
.-|..+|.|+.||...+.........+.
T Consensus 62 rRc~tLl~~i~kE~~~~~~~~~~~~k~~ 89 (99)
T 1ofc_X 62 RRCNTLITLIERENIELEEKERAEKKKK 89 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHCCC
T ss_conf 9999999999997310123344530267
No 4
>>2p0w_A Histone acetyltransferase type B catalytic subunit; HAT1, structural genomics, structural genomics consortium, SGC, transferase; HET: ACO; 1.90A {Homo sapiens} (A:262-324)
Probab=11.30 E-value=33 Score=16.39 Aligned_cols=36 Identities=28% Similarity=0.326 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 63699999999999999999999974220022787654
Q gi|254780912|r 9 LSLPSFMKSLLRSLELCSQIMQCVSKEKNTINKASVRA 46 (68)
Q Consensus 9 lslpsfmksllrslelcsqimqcvskekntinkasvra 46 (68)
+.||+|+..-|. .--|+-|---.+||-.||+..+|-
T Consensus 17 ~~L~~F~~~~l~--~gfs~eM~~eA~eklKiNkkQ~Rr 52 (63)
T 2p0w_A 17 QDLPCFSREKLM--QGFNEDMAIEAQQKFKINKQHARR 52 (63)
T ss_dssp TTSGGGSHHHHT--TCCCHHHHHHHHHHHCBCHHHHHH
T ss_pred HHCCCCCHHHHC--CCCCHHHHHHHHHHHCCCHHHHHH
T ss_conf 764334534542--589999999999984867999999
No 5
>>1q5z_A SIPA, SIPA; cell invasion; 1.80A {Salmonella typhimurium} (A:)
Probab=10.28 E-value=93 Score=13.87 Aligned_cols=17 Identities=35% Similarity=0.798 Sum_probs=13.2
Q ss_pred HCCCHHHHHHHHHHHHC
Q ss_conf 01828999999985429
Q gi|254780912|r 52 ISNPGKYVISGLLEGLL 68 (68)
Q Consensus 52 isnpgkyvisgllegll 68 (68)
...|..|+.|++|.|+.
T Consensus 142 lk~etdylls~~LDGii 158 (177)
T 1q5z_A 142 LKGETDYVLSNVLDGLI 158 (177)
T ss_dssp TGGGSCHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHH
T ss_conf 45762289998887764
No 6
>>2bde_A Cytosolic IMP-GMP specific 5'-nucleotidase; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.90A {Legionella pneumophila} (A:29-185)
Probab=9.60 E-value=1.3e+02 Score=13.10 Aligned_cols=17 Identities=12% Similarity=0.153 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 99999999999742200
Q gi|254780912|r 22 LELCSQIMQCVSKEKNT 38 (68)
Q Consensus 22 lelcsqimqcvskeknt 38 (68)
.-|++|+.+...+..+.
T Consensus 105 ~~L~a~lVd~~d~~~~~ 121 (157)
T 2bde_A 105 CILYGQLVDLKDTNPDK 121 (157)
T ss_dssp HHHHHHHHHHHHHSTTT
T ss_pred HHHHHHHHHHHHCCCCC
T ss_conf 99999999999718764
No 7
>>2kix_A BM2 protein; channel, transport protein; NMR {Influenza b virus} (A:)
Probab=8.88 E-value=1.5e+02 Score=12.71 Aligned_cols=19 Identities=37% Similarity=0.669 Sum_probs=14.6
Q ss_pred CHHHHHHHHHHHHHHHHHH
Q ss_conf 6366863699999999999
Q gi|254780912|r 4 NPLSLLSLPSFMKSLLRSL 22 (68)
Q Consensus 4 nplsllslpsfmksllrsl 22 (68)
.|+..||.-||.-|-|.-.
T Consensus 3 ep~qilsi~sfilsalhf~ 21 (33)
T 2kix_A 3 EPFQILSISSFILSALHFI 21 (33)
T ss_dssp TTTHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH
T ss_conf 6278999999999999999
No 8
>>1rp4_A Hypothetical 65.0 kDa protein in COX14-COS3 intergenic region precursor; flavoenzyme, disulfide bonds, CXXCXXC, oxidoreductase; HET: FAD; 2.20A {Saccharomyces cerevisiae} (A:1-39,A:173-389)
Probab=8.37 E-value=1.4e+02 Score=12.98 Aligned_cols=28 Identities=11% Similarity=0.301 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999974220022
Q gi|254780912|r 13 SFMKSLLRSLELCSQIMQCVSKEKNTIN 40 (68)
Q Consensus 13 sfmksllrslelcsqimqcvskekntin 40 (68)
.+-+..-.-..--|.||.||.-||--.-
T Consensus 160 ~LK~efr~~FrNISrIMDCVgCeKCRLW 187 (256)
T 1rp4_A 160 TLKDEFRSRFKNVTKIXDCVQCDRCRLW 187 (256)
T ss_dssp HHHHHHHHHHHHHHHGGGGCCSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 9999999999999999716676476645
No 9
>>2bbr_A Viral CAsp8 and FADD-like apoptosis regulator; viral protein; 1.20A {Molluscum contagiosum virus subtype 1} PDB: 2f1s_A (A:108-195)
Probab=7.40 E-value=1.8e+02 Score=12.33 Aligned_cols=27 Identities=33% Similarity=0.533 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 369999999999999999999997422
Q gi|254780912|r 10 SLPSFMKSLLRSLELCSQIMQCVSKEK 36 (68)
Q Consensus 10 slpsfmksllrslelcsqimqcvskek 36 (68)
|.-.-|-.-||.|+||.|....-..|.
T Consensus 48 svladmlrtlrrldlcqqlveyeqqeq 74 (88)
T 2bbr_A 48 SVLADMLRTLRRLDLCQQLVEYEQQEQ 74 (88)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 999999998498999999999999828
No 10
>>1n1f_A Interleukin-19; cytokine, four helix bundle, immune system; HET: NAG; 1.95A {Homo sapiens} (A:)
Probab=7.24 E-value=1.8e+02 Score=12.29 Aligned_cols=46 Identities=17% Similarity=0.324 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 3699999999999999999999---------974220022787654322310182
Q gi|254780912|r 10 SLPSFMKSLLRSLELCSQIMQC---------VSKEKNTINKASVRAGARNAISNP 55 (68)
Q Consensus 10 slpsfmksllrslelcsqimqc---------vskekntinkasvragarnaisnp 55 (68)
||-+...++-+.|..|-.-..| |..-+++.++-...+|...||+.-
T Consensus 88 sLan~l~~l~~~L~~C~~~~~C~~~~~~~~~v~~~~~~~~kl~~~~g~~KAiGEl 142 (159)
T 1n1f_A 88 SIANSFLYMQKTLRQCQEQRQCHCRQEATNATRVIHDNYDQLEVHAAAIKSLGEL 142 (159)
T ss_dssp HHHHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHSCHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999966542577872368999999999998643366889999889
Done!