RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780912|ref|YP_003065325.1| hypothetical protein
CLIBASIA_04055 [Candidatus Liberibacter asiaticus str. psy62]
         (68 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
          acyl-carrier-protein, beta-ketoacyl reductase,
          beta-ketoacyl synthase, dehydratase; 4.00A
          {Saccharomyces cerevisiae}
          Length = 2006

 Score = 25.7 bits (56), Expect = 2.4
 Identities = 12/64 (18%), Positives = 18/64 (28%), Gaps = 33/64 (51%)

Query: 5  PLSL--------LSLPS------------FMKSL------------LRS-LELCSQIMQC 31
          PL+L        L +P+            F K L              +  EL  + +  
Sbjct: 8  PLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGY 67

Query: 32 VSKE 35
          VS  
Sbjct: 68 VSSL 71


>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein,
           abnormal nuclear; zinc-finger, beta barrel, VWA domain,
           gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP:
           a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
          Length = 926

 Score = 23.9 bits (51), Expect = 8.7
 Identities = 7/25 (28%), Positives = 11/25 (44%)

Query: 5   PLSLLSLPSFMKSLLRSLELCSQIM 29
             +L   P  M SL + +   S I+
Sbjct: 704 CANLRMFPLLMHSLTKHMAFRSGIV 728


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.317    0.131    0.357 

Gapped
Lambda     K      H
   0.267   0.0582    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 476,423
Number of extensions: 14642
Number of successful extensions: 55
Number of sequences better than 10.0: 1
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 3
Length of query: 68
Length of database: 5,693,230
Length adjustment: 38
Effective length of query: 30
Effective length of database: 4,771,958
Effective search space: 143158740
Effective search space used: 143158740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.4 bits)