BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780912|ref|YP_003065325.1| hypothetical protein
CLIBASIA_04055 [Candidatus Liberibacter asiaticus str. psy62]
         (68 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780912|ref|YP_003065325.1| hypothetical protein CLIBASIA_04055 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 68

 Score =  134 bits (336), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 68/68 (100%), Positives = 68/68 (100%)

Query: 1  MINNPLSLLSLPSFMKSLLRSLELCSQIMQCVSKEKNTINKASVRAGARNAISNPGKYVI 60
          MINNPLSLLSLPSFMKSLLRSLELCSQIMQCVSKEKNTINKASVRAGARNAISNPGKYVI
Sbjct: 1  MINNPLSLLSLPSFMKSLLRSLELCSQIMQCVSKEKNTINKASVRAGARNAISNPGKYVI 60

Query: 61 SGLLEGLL 68
          SGLLEGLL
Sbjct: 61 SGLLEGLL 68


>gi|255764481|ref|YP_003065182.2| UDP-N-acetylglucosamine acyltransferase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 271

 Score = 23.1 bits (48), Expect = 0.99,   Method: Composition-based stats.
 Identities = 8/25 (32%), Positives = 15/25 (60%)

Query: 30  QCVSKEKNTINKASVRAGARNAISN 54
           +CV +E  TIN+ +V  G +  + +
Sbjct: 91  KCVIREGVTINRGTVEYGGKTIVGD 115


>gi|254780464|ref|YP_003064877.1| M16 family peptidase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 424

 Score = 22.7 bits (47), Expect = 1.2,   Method: Composition-based stats.
 Identities = 9/18 (50%), Positives = 13/18 (72%)

Query: 16  KSLLRSLELCSQIMQCVS 33
           +S LR+LE+  Q+M C S
Sbjct: 348 RSYLRALEISKQVMFCGS 365


>gi|254780264|ref|YP_003064677.1| elongation factor G [Candidatus Liberibacter asiaticus str. psy62]
          Length = 701

 Score = 21.9 bits (45), Expect = 2.0,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 19/38 (50%)

Query: 3   NNPLSLLSLPSFMKSLLRSLELCSQIMQCVSKEKNTIN 40
           ++PLS+L+      S + SL  C      +SK  + +N
Sbjct: 311 SSPLSMLAFKVMADSFVGSLTFCRIYSGKISKGDSLLN 348


>537021.9.peg.477_1 
          Length = 235

 Score = 20.8 bits (42), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 7/21 (33%), Positives = 12/21 (57%)

Query: 48  ARNAISNPGKYVISGLLEGLL 68
           ARN +  P K+ I  ++ G +
Sbjct: 93  ARNDVKTPAKFYILSIVMGFV 113


>gi|254780742|ref|YP_003065155.1| hypothetical protein CLIBASIA_03145 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 419

 Score = 20.8 bits (42), Expect = 4.3,   Method: Composition-based stats.
 Identities = 7/18 (38%), Positives = 14/18 (77%)

Query: 20 RSLELCSQIMQCVSKEKN 37
          R+L+ CS+I+  + K+K+
Sbjct: 36 RTLQKCSKIIDSIYKKKS 53


>gi|254780806|ref|YP_003065219.1| chromosome partitioning protein A [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 265

 Score = 20.4 bits (41), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 8/22 (36%), Positives = 15/22 (68%)

Query: 21  SLELCSQIMQCVSKEKNTINKA 42
           +LE  SQ+++ V + + T+N A
Sbjct: 159 ALEGLSQLLETVEEVRRTVNSA 180


>gi|254780316|ref|YP_003064729.1| phenylalanyl-tRNA synthetase subunit beta [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 805

 Score = 20.0 bits (40), Expect = 7.6,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 2   INNPLSLLSLPSFMKSLLRSLELCSQI-MQCVSKEKNTI 39
           I+ PLS  S+P  +K  L    LC    M CV   +N +
Sbjct: 191 ISCPLSSESIPLEIKFDLDDSSLCKGFAMCCVKGVRNNV 229


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.317    0.131    0.357 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,586
Number of Sequences: 1233
Number of extensions: 920
Number of successful extensions: 9
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of query: 68
length of database: 328,796
effective HSP length: 39
effective length of query: 29
effective length of database: 280,709
effective search space:  8140561
effective search space used:  8140561
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.2 bits)
S2: 31 (16.5 bits)