HHsearch alignment for GI: 254780913 and conserved domain: PRK09376
>PRK09376 rho transcription termination factor Rho; Provisional.
Probab=94.71 E-value=0.036 Score=33.06 Aligned_cols=59 Identities=19% Similarity=0.357 Sum_probs=39.4
Q ss_pred CCCEEEEEE--CCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCC-CCEEEEECC
Q ss_conf 887465885--48877883799995000235884468998899999986999711-105999635
Q gi|254780913|r 13 DKGYGFITP--EGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY-SAENLKLVP 74 (78)
Q Consensus 13 ~kGfGFI~~--d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~~~gk~-~A~~v~~i~ 74 (78)
T Consensus 60 ~dGyGFLR~~~~nylp~~dDiYVS~sqIrrf~---LR~GD~V~G~vR~pke~Ery~aLl~V~~VN 121 (416)
T PRK09376 60 PDGFGFLRSPDANYLPGPDDIYVSPSQIRRFN---LRTGDTVEGKIRPPKEGERYFALLKVETVN 121 (416)
T ss_pred CCCCEEEECCCCCCCCCCCCEEECHHHHHHHC---CCCCCEEEEEEECCCCCCCCCCEEEEEECC
T ss_conf 89865705787688899888336899999809---988888999886898888774337763228