HHsearch alignment for GI: 254780913 and conserved domain: TIGR02381
>TIGR02381 cspD cold shock domain protein CspD; InterPro: IPR012751 This entry represents what appears to be a phylogenetically distinct clade, containing Escherichia coli CspD (P24245 from SWISSPROT) and related proteobacterial proteins within the larger family of cold shock domain proteins. The gene symbol cspD may have been used independently for other subfamilies of cold shock domain proteins, such as for Bacillus subtilis CspD. These proteins typically are shorter than 70 amino acids. In Escherichia coli, CspD is a stress response protein induced in stationary phase. This homodimer binds single-stranded DNA and appears to inhibit DNA replication . ; GO: 0003676 nucleic acid binding, 0006355 regulation of transcription DNA-dependent, 0006950 response to stress, 0005737 cytoplasm.
Probab=99.67 E-value=1.3e-16 Score=113.61 Aligned_cols=67 Identities=34% Similarity=0.691 Sum_probs=59.1
Q ss_pred CCCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEC
Q ss_conf 877627751468874658854887788379999500023588446899889999998699971110599963
Q gi|254780913|r 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73 (78)
Q Consensus 2 m~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~~~gk~~A~~v~~i 73 (78)
T Consensus 1 m~~G~vkWfnn~kGfGfi~~~~---~~~d~fahys~i~~dGy~~lk~Gq~v~f~~~~~~~G--~~a~~~~~~ 67 (68)
T TIGR02381 1 MEIGIVKWFNNAKGFGFISAEG---KDEDIFAHYSTIQMDGYRTLKAGQKVQFEVVQGEKG--AHATKIVPI 67 (68)
T ss_pred CCCCCEEECCCCCCEEEEECCC---CCCCEEEEEEEEECCCCEEECCCCEEEEEEEECCCC--CCEEEEEEE
T ss_conf 9744045301665203541478---776223211100014430001474368986207888--410266760