HHsearch alignment for GI: 254780913 and conserved domain: pfam07497
>pfam07497 Rho_RNA_bind Rho termination factor, RNA-binding domain. The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts. It it thought that two copies of Rho bind to RNA and that Rho functions as a hexamer of protomers.
Probab=95.97 E-value=0.0087 Score=36.48 Aligned_cols=58 Identities=16% Similarity=0.365 Sum_probs=39.1
Q ss_pred CCCEEEEEE--CCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCC-CCEEEEEC
Q ss_conf 887465885--48877883799995000235884468998899999986999711-10599963
Q gi|254780913|r 13 DKGYGFITP--EGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY-SAENLKLV 73 (78)
Q Consensus 13 ~kGfGFI~~--d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~~~gk~-~A~~v~~i 73 (78)
T Consensus 11 ~dGyGFLR~~~~~y~~~~~DvyVs~~~Irrf~---LR~GD~V~G~vR~p~~~ek~~aL~~V~~V 71 (78)
T pfam07497 11 PDGFGFLRSPDANYLPGPDDIYVSPSQIRRFN---LRTGDTIEGKIRPPKEGERYFALLKVETI 71 (78)
T ss_pred CCCCEEEECCCCCCCCCCCCEEECHHHHHHCC---CCCCCEEEEEEECCCCCCCCEEEEEEEEE
T ss_conf 89837947786587999888788999998719---98888999998799989875210689758