HHsearch alignment for GI: 254780913 and conserved domain: smart00357

>smart00357 CSP Cold shock protein domain. RNA-binding domain that functions as a RNA-chaperone in bacteria and is involved in regulating translation in eukaryotes. Contains sub-family of RNA-binding domains in the Rho transcription termination factor.

Probab=99.83  E-value=1.7e-20  Score=135.39  Aligned_cols=64  Identities=44%  Similarity=0.848  Sum_probs=57.3

Q ss_pred             CCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEC
Q ss_conf             7627751468874658854887788379999500023588446899889999998699971110599963
Q gi|254780913|r    4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV   73 (78)
Q Consensus         4 ~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~~~gk~~A~~v~~i   73 (78)
T Consensus         1 tG~Vk~f~--kGfGFI~~~---~g~~DvFvH~s~i~-~~~~~l~~Gd~V~f~v~~~~~~~~~~A~~v~~l   64 (64)
T smart00357        1 TGVVKWFN--KGFGFIRPD---DGGKDVFVHPSQIQ-GGLKSLREGDEVEFKVVSPRGGGKPEAENVVKL   64 (64)
T ss_pred             CCEEEEEE--CCEEEEEEC---CCCCCEEEEHHHHC-CCCCCCCCCCEEEEEEEECCCCCCCEEEEEEEC
T ss_conf             94796982--844888618---99940999869954-677744758789999998899998441898979