HHsearch alignment of GI: 254780913 and MMDB domain: 1a62_A_

>1a62_A (A:) RHO; transcription termination, termination, RNA binding domain, transcription regulation, OB fold, F1-ATPase; 1.55A {Escherichia coli}

Probab=95.34  E-value=0.022  Score=33.92  Aligned_cols=59  Identities=17%  Similarity=0.358  Sum_probs=39.5

Q ss_pred             CCCCEEEEEE--CCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCC-CCEEEEEC
Q ss_conf             6887465885--48877883799995000235884468998899999986999711-10599963
Q gi|254780913|r   12 PDKGYGFITP--EGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY-SAENLKLV   73 (78)
Q Consensus        12 ~~kGfGFI~~--d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~~~gk~-~A~~v~~i   73 (78)
                      ...||||+..  .+..-+..||||..|-|+..+   |+.|+.|+=.+..-..+-|+ +...|.-+
T Consensus        58 ~~dG~GFLR~~~~ny~~~~~DvyVs~sqIrrf~---LR~Gd~I~G~vr~p~~~ek~~aL~~V~~V  119 (130)
T 1a62_A           58 LQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFN---LRTGDTISGKIRPPKEGERYFALLKVNEV  119 (130)
T ss_dssp             CTTSCEEEECGGGTTCCCTTCEEECHHHHHHTT---CCTTCEEEEEEECCCTTCCSEEEEEEEEE
T ss_pred             CCCCCCEEECCCCCCCCCCCCEEECHHHHHHHC---CCCCCEEEEEEECCCCCCCCHHHEEEHHH
T ss_conf             468731564576678999656332899999848---98552789998778888764223241340