Query gi|254780913|ref|YP_003065326.1| cold shock protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 78
No_of_seqs 112 out of 2159
Neff 6.0
Searched_HMMs 33803
Date Wed Jun 1 19:26:02 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780913.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >3i2z_B RNA chaperone, negativ 99.9 5.4E-22 1.6E-26 143.4 7.8 68 1-73 4-71 (71)
2 >1h95_A CSD, Y-box binding pro 99.9 2.4E-22 7.2E-27 145.3 5.4 69 1-74 7-79 (79)
3 >2kcm_A Cold shock domain fami 99.8 1.9E-21 5.7E-26 140.3 5.4 69 4-77 2-70 (74)
4 >1c9o_A CSPB, cold-shock prote 99.8 9.1E-21 2.7E-25 136.5 7.6 66 2-73 1-66 (66)
5 >2k5n_A Putative cold-shock pr 99.8 4E-20 1.2E-24 132.9 9.0 69 1-77 1-69 (74)
6 >2bh8_A 1B11; transcription, m 99.8 1.3E-19 3.9E-24 130.0 6.9 54 2-58 16-71 (71)
7 >2ytv_A Cold shock domain-cont 99.8 5.2E-20 1.5E-24 132.3 4.7 72 1-78 7-78 (79)
8 >1wfq_A UNR protein; beta-barr 99.8 3.6E-19 1.1E-23 127.6 7.8 71 2-78 18-88 (89)
9 >1g6p_A Cold shock protein TMC 99.8 4.3E-19 1.3E-23 127.1 6.3 66 3-74 1-66 (66)
10 >2ytx_A Cold shock domain-cont 99.8 1.2E-18 3.5E-23 124.7 6.5 69 1-77 17-85 (97)
11 >2yty_A Cold shock domain-cont 99.8 6.5E-19 1.9E-23 126.2 5.0 71 1-78 17-87 (88)
12 >1x65_A UNR protein; cell-free 99.7 1.2E-18 3.4E-23 124.7 1.4 69 2-77 8-77 (89)
13 >3cam_A Cold-shock domain fami 99.5 1.6E-14 4.8E-19 101.6 3.8 38 3-43 2-39 (39)
14 >2id0_A Exoribonuclease 2; RNA 97.5 0.0002 5.9E-09 45.3 5.7 60 4-76 4-63 (64)
15 >3cam_A Cold-shock domain fami 97.5 8.7E-05 2.6E-09 47.3 3.6 27 44-72 1-27 (28)
16 >1a62_A RHO; transcription ter 95.3 0.022 6.4E-07 33.9 4.2 59 12-73 58-119 (130)
17 >3ice_A Transcription terminat 95.2 0.031 9.1E-07 33.1 4.7 60 12-74 61-123 (141)
18 >3go5_A Multidomain protein wi 93.0 0.14 4.2E-06 29.4 4.4 51 13-68 17-69 (71)
19 >2id0_A Exoribonuclease 2; RNA 90.7 1 3E-05 24.6 6.5 66 8-77 5-72 (95)
20 >2k52_A Uncharacterized protei 87.5 0.69 2E-05 25.5 3.8 64 3-73 9-73 (80)
21 >2bx2_L Ribonuclease E, RNAse 86.7 2.4 7.2E-05 22.5 7.8 66 3-75 7-86 (94)
22 >2ba0_A Archeal exosome RNA bi 85.7 2.1 6.1E-05 22.9 5.4 58 2-65 7-69 (82)
23 >3bzc_A TEX; helix-turn-helix, 83.4 2.1 6.2E-05 22.8 4.6 65 1-73 15-83 (144)
24 >2z0s_A Probable exosome compl 83.3 2.5 7.4E-05 22.4 5.0 58 2-65 69-134 (147)
25 >2nn6_G Exosome complex exonuc 83.3 3 8.7E-05 22.0 5.4 57 4-66 10-69 (87)
26 >2ckz_B C25, DNA-directed RNA 81.6 2.4 7.1E-05 22.5 4.4 53 3-60 5-74 (138)
27 >2id0_A Exoribonuclease 2; RNA 81.3 4.2 0.00013 21.1 6.1 55 3-62 6-76 (86)
28 >2ja9_A Exosome complex exonuc 81.0 4.1 0.00012 21.2 5.4 56 3-64 11-70 (90)
29 >2b8k_G B16, DNA-directed RNA 79.6 4.8 0.00014 20.8 5.4 51 3-60 5-69 (133)
30 >2c35_B Human RPB7, DNA-direct 78.5 3.1 9.1E-05 21.9 4.1 66 4-76 6-87 (92)
31 >2wp8_J Exosome complex exonuc 77.8 5.5 0.00016 20.5 6.1 62 9-78 14-76 (103)
32 >3go5_A Multidomain protein wi 77.7 5.6 0.00016 20.5 5.4 51 4-64 22-74 (84)
33 >2je6_I RRP4, exosome complex 77.7 3.3 9.7E-05 21.8 4.1 58 2-65 7-71 (85)
34 >3cdi_A Polynucleotide phospho 76.1 0.62 1.8E-05 25.8 0.0 63 3-71 257-323 (349)
35 >2eqs_A ATP-dependent RNA heli 75.9 4.5 0.00013 21.0 4.4 57 3-62 16-77 (103)
36 >1y14_B B16, RPB7, DNA-directe 73.6 6.2 0.00018 20.2 4.6 53 3-62 5-71 (89)
37 >2nn6_H Exosome complex exonuc 72.9 3.1 9.3E-05 21.9 2.9 56 3-64 8-77 (92)
38 >1hh2_P NUSA, N utilization su 72.6 7 0.00021 19.9 4.7 51 3-62 10-60 (87)
39 >3h0g_G DNA-directed RNA polym 71.4 6.7 0.0002 20.0 4.3 63 4-74 6-83 (89)
40 >2qcp_X Cation efflux system p 64.1 9.1 0.00027 19.3 3.8 31 41-73 49-79 (80)
41 >1wi5_A RRP5 protein homolog; 63.2 9 0.00027 19.3 3.6 55 3-62 25-84 (119)
42 >1go3_E DNA-directed RNA polym 62.5 12 0.00037 18.5 5.1 50 4-60 6-70 (107)
43 >2vb2_X Copper protein, cation 59.3 12 0.00035 18.6 3.7 30 42-73 58-87 (88)
44 >2k4k_A GSP13, general stress 58.2 8.2 0.00024 19.5 2.7 54 3-62 11-68 (130)
45 >2waq_E DNA-directed RNA polym 55.0 17 0.0005 17.8 5.9 53 3-62 5-72 (100)
46 >2vnu_D Exosome complex exonuc 54.7 17 0.00051 17.8 6.8 61 10-78 15-76 (103)
47 >1j6q_A Cytochrome C maturatio 53.4 18 0.00053 17.6 6.6 65 1-72 40-104 (136)
48 >2dgu_A Heterogeneous nuclear 42.5 16 0.00048 17.9 2.2 20 4-23 35-54 (103)
49 >2khi_A 30S ribosomal protein 42.1 27 0.00081 16.6 4.4 56 3-64 34-95 (115)
50 >2ba1_A Archaeal exosome RNA b 41.9 25 0.00075 16.8 3.1 53 4-59 9-72 (92)
51 >2a19_A EIF-2- alpha, eukaryot 40.4 29 0.00086 16.5 6.4 55 3-61 19-77 (88)
52 >1sr3_A APO-CCME; OB fold, bet 39.8 30 0.00088 16.4 4.7 62 1-70 36-97 (136)
53 >1luz_A Protein K3, protein K2 38.0 20 0.0006 17.3 2.1 62 4-72 16-83 (88)
54 >1ax3_A Iiaglc, glucose permea 36.5 34 0.001 16.1 4.0 45 4-53 57-107 (162)
55 >2gpr_A Glucose-permease IIA c 35.7 35 0.001 16.0 4.6 45 4-53 52-102 (154)
56 >2nn6_I 3'-5' exoribonuclease 35.3 35 0.001 16.0 3.2 57 3-62 10-77 (94)
57 >2khj_A 30S ribosomal protein 32.7 31 0.00092 16.3 2.4 53 4-62 36-92 (109)
58 >1e3p_A Guanosine pentaphospha 32.4 6.6 0.0002 20.0 -1.1 60 3-68 80-147 (166)
59 >2jjq_A Uncharacterized RNA me 31.8 40 0.0012 15.7 3.8 33 45-78 43-75 (83)
60 >1uwv_A 23S rRNA (uracil-5-)-m 30.2 43 0.0013 15.5 7.7 58 4-78 18-75 (84)
61 >2kct_A Cytochrome C-type biog 30.2 43 0.0013 15.5 7.5 68 1-72 16-83 (94)
62 >1f3z_A EIIA-GLC, glucose-spec 30.1 43 0.0013 15.5 5.2 45 4-53 57-107 (161)
63 >2hsi_A Putative peptidase M23 29.7 44 0.0013 15.5 4.1 52 2-54 81-133 (152)
64 >3gqh_A Preneck appendage prot 28.1 19 0.00056 17.5 0.6 12 8-19 38-49 (54)
65 >2gu1_A Zinc peptidase; alpha/ 28.0 47 0.0014 15.3 4.8 52 2-54 43-95 (156)
66 >2nq5_A 5-methyltetrahydropter 27.6 27 0.00079 16.7 1.3 17 6-24 44-60 (63)
67 >2hpi_A DNA polymerase III alp 26.7 47 0.0014 15.3 2.4 67 7-75 31-100 (105)
68 >2jvo_A Nucleolar protein 3; n 25.4 31 0.0009 16.3 1.3 21 3-23 54-74 (108)
69 >3cw2_C Translation initiation 25.1 44 0.0013 15.5 2.0 55 4-62 16-74 (85)
70 >2dnr_A Synaptojanin-1; RRM do 24.8 46 0.0014 15.3 2.1 45 3-56 38-82 (91)
71 >2cqo_A Nucleolar protein of 4 24.6 55 0.0016 14.9 5.4 54 3-61 26-83 (119)
72 >1wf1_A RNA-binding protein RA 24.0 32 0.00094 16.3 1.1 21 3-23 51-71 (110)
73 >3hfn_A ASL2047 protein; HFQ, 22.0 30 0.0009 16.3 0.7 32 2-39 35-66 (72)
74 >1u1j_A 5-methyltetrahydropter 21.6 30 0.00088 16.4 0.6 16 6-23 50-65 (69)
No 1
>>3i2z_B RNA chaperone, negative regulator of CSPA transcription; beta barrel, DNA binding protein/transcription, cytoplasm, gene regulation; 1.10A {Salmonella typhimurium} PDB: 1mjc_A 3mef_A (B:)
Probab=99.86 E-value=5.4e-22 Score=143.36 Aligned_cols=68 Identities=40% Similarity=0.750 Sum_probs=62.5
Q ss_pred CCCCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEC
Q ss_conf 9877627751468874658854887788379999500023588446899889999998699971110599963
Q gi|254780913|r 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73 (78)
Q Consensus 1 mm~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~~~gk~~A~~v~~i 73 (78)
.|.+|+|||||.+||||||++| ++++|||+|+|+|...+++.|.+|++|+|++++++++ ++|.+|++|
T Consensus 4 ~~~~G~Vk~f~~~kGyGFI~~~---~g~~dif~h~s~l~~~~~~~l~~G~~V~f~~~~~~kG--~~A~~V~~i 71 (71)
T 3i2z_B 4 SKIKGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKG--PSAANVTAL 71 (71)
T ss_dssp -CEEEEEEEEETTTTEEEEEET---TCCCCEEEEGGGBCCSSCCCCCTTCEEEEEEEEETTE--EEEEEEEEC
T ss_pred CCCEEEEEEECCCCCEEEEEEC---CCCCCEEEEHHHHCCCCCCCCCCCCEEEEEEEECCCC--CEEEEEEEC
T ss_conf 5004799999099984899868---9981299991880613798589999999999969999--786888959
No 2
>>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} (A:)
Probab=99.86 E-value=2.4e-22 Score=145.30 Aligned_cols=69 Identities=30% Similarity=0.627 Sum_probs=61.7
Q ss_pred CCCCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCC----CCCCCCCCEEEEEEEECCCCCCCCCEEEEECC
Q ss_conf 987762775146887465885488778837999950002358----84468998899999986999711105999635
Q gi|254780913|r 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQNDANGKYSAENLKLVP 74 (78)
Q Consensus 1 mm~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g----~~~l~~G~~V~F~i~~~~~~gk~~A~~v~~i~ 74 (78)
||.+|+|||||++||||||+|| ++++|+|+|+|+|+.++ ++.|.+||+|+|++.+++++ ++|.+|+++.
T Consensus 7 ~~~~G~Vk~f~~~kGfGFI~~~---~g~~dif~h~s~i~~~g~~~~~~~l~~G~~V~F~~~~~~kG--~~A~~V~~~g 79 (79)
T 1h95_A 7 TKVLGTVKWFNVRNGYGFINRN---DTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKG--AEAANVTGPG 79 (79)
T ss_dssp EEEEEEEEEEETTTTEEEEEEG---GGTEEEEEEGGGBCSCCCSCCSCSCCSSCEEEEEEEECSSS--EEEESBCCCC
T ss_pred CCCEEEEEEEECCCCEEEEEEC---CCCCCEEEEHHHHCCCCCCCCCCCCCCCCEEEEEEEECCCC--CEEEEEECCC
T ss_conf 7510899999799998999868---99867999849933468743332289999999999979999--7679997899
No 3
>>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Shewanella oneidensis mr-1} (A:)
Probab=99.84 E-value=1.9e-21 Score=140.27 Aligned_cols=69 Identities=19% Similarity=0.321 Sum_probs=63.6
Q ss_pred CCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEECCCCC
Q ss_conf 76277514688746588548877883799995000235884468998899999986999711105999635788
Q gi|254780913|r 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKSS 77 (78)
Q Consensus 4 ~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~~~gk~~A~~v~~i~~~~ 77 (78)
+|+|||||.+||||||+|| ++++|+|+|+|+|+.+++++|.+|++|+|++.+++++ ++|.+|++++.++
T Consensus 2 ~G~Vk~f~~~kGfGFI~~d---~~~~dif~h~s~l~~~g~~~l~~G~~V~f~~~~~~kG--~~A~~V~~~~~~~ 70 (74)
T 2kcm_A 2 KGKVVSYLAAKKYGFIQGD---DGESYFLHFSELLDKKDEGKLVKGSMVHFDPTPTPKG--LAAKAISLPLEHH 70 (74)
T ss_dssp EEEEEEEETTTTEEEEEET---TSCEECCCGGGSSCSGGGTTCCTTSEEEEEEECTTTS--CEEEEEECCSCSC
T ss_pred EEEEEEEECCCCEEEEECC---CCCEEEEEHHHHCCCCCCCCCCCCCEEEEEEEECCCC--CEEEEEEECCCCC
T ss_conf 3899999899986678369---9967999947703478854579999999999989998--6615998033134
No 4
>>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer; 1.17A {Bacillus caldolyticus} (A:)
Probab=99.83 E-value=9.1e-21 Score=136.51 Aligned_cols=66 Identities=42% Similarity=0.808 Sum_probs=61.1
Q ss_pred CCCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEC
Q ss_conf 877627751468874658854887788379999500023588446899889999998699971110599963
Q gi|254780913|r 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73 (78)
Q Consensus 2 m~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~~~gk~~A~~v~~i 73 (78)
|.+|+|||||++||||||+|| ++.|+|+|+|++...+++.|.+|++|+|++.+++++ ++|.+|++|
T Consensus 1 M~~G~Vk~f~~~kGfGFI~~d----~g~d~~f~~~~~~~~~~~~l~~G~~V~f~~~~~~~G--~~A~~V~~i 66 (66)
T 1c9o_A 1 MQRGKVKWFNNEKGYGFIEVE----GGSDVFVHFTAIQGEGFKTLEEGQEVSFEIVQGNRG--PQAANVVKL 66 (66)
T ss_dssp CEEEEEEEEETTTTEEEEEET----TEEEEEEEGGGBCSSSCCCCCTTCEEEEEEEEETTE--EEEEEEEEC
T ss_pred CCCEEEEEEECCCCEEEEEEC----CCCEEEEEEHHCCCCCCCCCCCCCEEEEEEEECCCC--CEEEEEEEC
T ss_conf 998199999799998999776----993499990454504698789999999999989999--797889979
No 5
>>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, structural genomics, protein structure initiative; NMR {Pectobacterium atrosepticum} (A:)
Probab=99.82 E-value=4e-20 Score=132.94 Aligned_cols=69 Identities=33% Similarity=0.518 Sum_probs=59.2
Q ss_pred CCCCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEECCCCC
Q ss_conf 98776277514688746588548877883799995000235884468998899999986999711105999635788
Q gi|254780913|r 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKSS 77 (78)
Q Consensus 1 mm~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~~~gk~~A~~v~~i~~~~ 77 (78)
||.+|+|||||.+||||||++| ++.|+|+|.++.. +++.|.+|++|+|++.+++++ ++|.+|++++.++
T Consensus 1 m~~~G~Vk~f~~~kGfGFI~~~----~g~~~~f~~~~~~--g~~~l~~G~~V~f~~~~~~kG--~~A~~V~~~~~~~ 69 (74)
T 2k5n_A 1 MAMNGTITTWFKDKGFGFIKDE----NGDNRYFHVIKVA--NPDLIKKDAAVTFEPTTNNKG--LSAYAVKVVPLEH 69 (74)
T ss_dssp CCEEEEEEEEETTTTEEEEEES----SSCEEEEEGGGBS--SGGGCCTTCEEEEEEEECSSS--EEEEEEEECCSSC
T ss_pred CCCCEEEEEEECCCCEEEEECC----CCCEEEEEEEEEC--CCCCCCCCCEEEEEEEECCCC--CEEEEEEEECCCC
T ss_conf 9844399999899985898427----9981999966007--987138999999999979998--7788999968841
No 6
>>2bh8_A 1B11; transcription, molecular evolution, unique architecture, activator, transcription regulation, phosphorylation; 1.9A {Escherichia coli} (A:1-71)
Probab=99.79 E-value=1.3e-19 Score=130.01 Aligned_cols=54 Identities=41% Similarity=0.681 Sum_probs=49.3
Q ss_pred CCCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCC--CCCCCCCEEEEEEEE
Q ss_conf 877627751468874658854887788379999500023588--446899889999998
Q gi|254780913|r 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL--FNLTEGQLVTYDYVQ 58 (78)
Q Consensus 2 m~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~--~~l~~G~~V~F~i~~ 58 (78)
|.+|+|||||.+||||||++| ++++|||||+|+|+.+++ ++|.+||+|+|++++
T Consensus 16 ~~~G~Vk~fn~~kGfGFI~~~---d~~~dvFvH~s~i~~~g~~~r~l~~G~~V~f~v~e 71 (71)
T 2bh8_A 16 KMTGIVKWFNADKGFGFITPD---DGSKDVFVHFSAGSSGAAVRGNPQQGDRVEGKIKS 71 (71)
T ss_dssp CEEEEEEEEEGGGTEEEEEES---SSSCEEEEECCCSCSSSCCCCCCCTTCEEEEEEEE
T ss_pred CEEEEEEEEECCCCEEEEEEC---CCCCEEEEEECCCCCCCCCEECCCCCCEEEEEEEE
T ss_conf 458889998689987998836---89950466630012122000004578499988766
No 7
>>2ytv_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational regulation, RNA chaperone, RNA/DNA binding; NMR {Homo sapiens} (A:)
Probab=99.79 E-value=5.2e-20 Score=132.27 Aligned_cols=72 Identities=26% Similarity=0.409 Sum_probs=62.4
Q ss_pred CCCCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEECCCCCC
Q ss_conf 987762775146887465885488778837999950002358844689988999999869997111059996357889
Q gi|254780913|r 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKSSN 78 (78)
Q Consensus 1 mm~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~~~gk~~A~~v~~i~~~~~ 78 (78)
.|.+|+||||| ||||||+++ .++++|||||+|+|+ +.+.|.+||+|+|++++++++++++|++|+.++.+|+
T Consensus 7 ~~~~G~Vk~fd--kGfGFI~~~--d~~g~dvF~H~s~i~--~~~~l~~G~~V~F~~~~~~kG~k~~A~~V~~~~~~~a 78 (79)
T 2ytv_A 7 GLRRATVECVK--DQFGFINYE--VGDSKKLFFHVKEVQ--DGIELQAGDEVEFSVILNQRTGKCSACNVWRVSGPSS 78 (79)
T ss_dssp SBCCEEEEECC--SSEEEESCC--CSSSSSEEEETTTCC--SSCCCCTTCEEECBCEECSSSCCEECCSCEECSCCCC
T ss_pred CCEEEEEEEEC--CCCEEEEEC--CCCCCEEEEEHHHCC--CCCCCCCCCEEEEEEEECCCCCEEEEEEEEECCCCCC
T ss_conf 53589998933--882088814--899837888956747--9743688999999999899899578788888888999
No 8
>>1wfq_A UNR protein; beta-barrel, translational regulation, RNA chaperone, RNA/DNA binding, QB fold, greek-KEY topology, structural genomics; NMR {Homo sapiens} (A:)
Probab=99.78 E-value=3.6e-19 Score=127.58 Aligned_cols=71 Identities=27% Similarity=0.358 Sum_probs=63.5
Q ss_pred CCCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEECCCCCC
Q ss_conf 87762775146887465885488778837999950002358844689988999999869997111059996357889
Q gi|254780913|r 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKSSN 78 (78)
Q Consensus 2 m~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~~~gk~~A~~v~~i~~~~~ 78 (78)
|.+|+||||| ||||||+++ ++++|||+|+|+|. .+++.|.+|++|+|++.+++++++++|++|+.+...|+
T Consensus 18 ~~~G~Vk~f~--kGfGFI~~~---~g~~diF~h~s~~~-~~~~~l~~G~~V~f~v~~~~kG~k~~A~~v~~~~~~p~ 88 (89)
T 1wfq_A 18 RETGVIEKLL--TSYGFIQCS---ERQARLFFHCSQYN-GNLQDLKVGDDVEFEVSSDRRTGKPIAVKLVKISGPSS 88 (89)
T ss_dssp EEEEEEEEEC--SSEEEEEET---TTTEEEEEETTTCS-SCTTTCCTTCCEEEEEEECSSSCCEEEEEEEESSCCCC
T ss_pred EEEEEEEEEC--CCCCEEEEC---CCCCEEEEEEEECC-CCCCCCCCCCEEEEEEEECCCCCCEEEEEEEECCCCCC
T ss_conf 5889998956--800369727---99963999985201-57785789999999999899899158789888988989
No 9
>>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} (A:)
Probab=99.77 E-value=4.3e-19 Score=127.13 Aligned_cols=66 Identities=41% Similarity=0.806 Sum_probs=58.5
Q ss_pred CCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEECC
Q ss_conf 776277514688746588548877883799995000235884468998899999986999711105999635
Q gi|254780913|r 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVP 74 (78)
Q Consensus 3 ~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~~~gk~~A~~v~~i~ 74 (78)
.+|+|||||++||||||+|| ++.|+|+|++++...+++.|.+||+|+|++.+++++ ++|.+|+++.
T Consensus 1 i~G~Vk~f~~~kGfGFI~~d----~~~d~~f~~~~~~~~~~~~l~~G~~V~f~~~~~~~G--~~A~~V~~~d 66 (66)
T 1g6p_A 1 MRGKVKWFDSKKGYGFITKD----EGGDVFVHWSAIEMEGFKTLKEGQVVEFEIQEGKKG--PQAAHVKVVE 66 (66)
T ss_dssp CCEEEEEEETTTTEEEEEET----TSCBCBBCSSSSCCSSCCCCCSSSEEEEEEECSSSC--CEEEEEEEEC
T ss_pred CEEEEEEEECCCCEEEEECC----CCCEEEEEEHHHCCCCCCCCCCCCEEEEEEEECCCC--CEEEEEEECC
T ss_conf 94899999599998898728----997799991883424788789999999999989999--8998999549
No 10
>>2ytx_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational regulation, RNA chaperone, RNA/DNA binding; NMR {Homo sapiens} (A:)
Probab=99.75 E-value=1.2e-18 Score=124.72 Aligned_cols=69 Identities=20% Similarity=0.406 Sum_probs=60.3
Q ss_pred CCCCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEECCCCC
Q ss_conf 98776277514688746588548877883799995000235884468998899999986999711105999635788
Q gi|254780913|r 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKSS 77 (78)
Q Consensus 1 mm~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~~~gk~~A~~v~~i~~~~ 77 (78)
||.+|+||||| ||||||+++ ++++|||+|+|++. .+++.|.+|++|+|++.+++++ ++|.+|+++...+
T Consensus 17 ~~~~G~Vk~f~--kGfGFI~~~---~g~~d~F~h~s~~~-~~~~~l~~G~~V~f~~~~~~~G--~~A~~V~~~~~~~ 85 (97)
T 2ytx_A 17 ARCQGVVCAMK--EAFGFIERG---DVVKEIFFHYSEFK-GDLETLQPGDDVEFTIKDRNGK--EVATDVRLLPQGT 85 (97)
T ss_dssp CCEEEEECCCC--SSEEEEECS---SSCCCEEEETTTCC-SCTTSCCSCCEEEEEECCCSSS--CBEEEEEECCCSS
T ss_pred EEEEEEEEEEC--CCCEEEECC---CCCCEEEEEHHHHH-CCCCCCCCCCEEEEEEEECCCC--CEEEEEEECCCCC
T ss_conf 07889999911--670278828---99963999869912-2016577786999999968999--7888979879998
No 11
>>2yty_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational regulation, RNA chaperone, RNA/DNA binding; NMR {Homo sapiens} (A:)
Probab=99.75 E-value=6.5e-19 Score=126.17 Aligned_cols=71 Identities=23% Similarity=0.386 Sum_probs=61.5
Q ss_pred CCCCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEECCCCCC
Q ss_conf 987762775146887465885488778837999950002358844689988999999869997111059996357889
Q gi|254780913|r 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKSSN 78 (78)
Q Consensus 1 mm~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~~~gk~~A~~v~~i~~~~~ 78 (78)
+|.+|+||||| ||||||+++ ++++|||+|+|+|.. +++.|.+|++|+|++.++ .+|+++|.+|++++.+|+
T Consensus 17 ~~~~G~Vk~~~--kGfGFI~~~---~g~~dvF~h~s~~~~-~~~~l~~G~~V~f~~~~~-~~g~~~A~~V~~~~~~~~ 87 (88)
T 2yty_A 17 KRLLGYVATLK--DNFGFIETA---NHDKEIFFHYSEFSG-DVDSLELGDMVEYSLSKG-KGNKVSAEKVNKTSGPSS 87 (88)
T ss_dssp CCEEEEEEEEC--SSEEEEECS---SSSCEEEEETTTCCS-CTTTCCTTCEEEECCCCC-SCSCCBCCSCEECCCCCC
T ss_pred CEEEEEEEEEE--CCEEEEECC---CCCCCEEEEHHHCCC-CCCCCCCCCEEEEEEEEC-CCCCEEEEEECCCCCCCC
T ss_conf 28799999996--828389608---999418998577047-888478999999999989-999988598604888989
No 12
>>1x65_A UNR protein; cell-free protein synthesis, beta-barrel, translational regulation, RNA chaperone, RNA/DNA binding, QB fold, greek- KEY topology; NMR {Homo sapiens} (A:)
Probab=99.71 E-value=1.2e-18 Score=124.74 Aligned_cols=69 Identities=23% Similarity=0.310 Sum_probs=59.7
Q ss_pred CCCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCC-CCCCCCEEEEECCCCC
Q ss_conf 877627751468874658854887788379999500023588446899889999998699-9711105999635788
Q gi|254780913|r 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA-NGKYSAENLKLVPKSS 77 (78)
Q Consensus 2 m~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~~-~gk~~A~~v~~i~~~~ 77 (78)
|.+|+||||| ||||||+++ ++++|||+|+|+|+ +.+.|.+|++|+|+++++++ .++++|.+|+++++++
T Consensus 8 r~~G~Vk~~~--kGfGFI~~~---~~~~diFfH~s~~~--~~~~l~~G~~V~f~~~~~~~~~~g~~A~~V~~~~~~~ 77 (89)
T 1x65_A 8 REMGVIAAMR--DGFGFIKCV---DRDVRMFFHFSEIL--DGNQLHIADEVEFTVVPDMLSAQRNHAIRIKKLPKGT 77 (89)
T ss_dssp CEEEEEEECC--TTBCEEEES---SSSSCCCCBTTGGG--GSCCCCTTCCEEECCBCCSSSCCCCBCCSCEECCBTT
T ss_pred CEEEEEEEEC--CCEEEEECC---CCCCCEEEEHHHCC--CCCCCCCCCEEEEEEEECCCCCCCCEEEEEEECCCCC
T ss_conf 5779999970--871478628---99940899934605--8898789999999999888989982667858879996
No 13
>>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, structural genomics, oxford protein production facility, OPPF; 2.60A {Neisseria meningitidis MC58} (A:1-39)
Probab=99.48 E-value=1.6e-14 Score=101.63 Aligned_cols=38 Identities=50% Similarity=1.068 Sum_probs=34.3
Q ss_pred CCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCC
Q ss_conf 77627751468874658854887788379999500023588
Q gi|254780913|r 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL 43 (78)
Q Consensus 3 ~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~ 43 (78)
.+|+|||||.+||||||+|+ ++++|||||+|+|+.+|+
T Consensus 2 v~G~VkwFn~~kGfGFI~~~---dg~~DvFvH~s~l~~~G~ 39 (39)
T 3cam_A 2 ATGIVKWFNDAKGFGFITPD---EGGEDLFAHFSAINXEGF 39 (39)
T ss_dssp EEEEEEEEETTTTEEEEEET---TSCCCEEEEGGGBCGGGG
T ss_pred CCEEEEEEECCCCCEEEEEC---CCCCEEEEEEHHCCCCCC
T ss_conf 98199999699994899867---998279999734051469
No 14
>>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli K12} (A:20-83)
Probab=97.52 E-value=0.0002 Score=45.31 Aligned_cols=60 Identities=22% Similarity=0.352 Sum_probs=44.8
Q ss_pred CCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEECCCC
Q ss_conf 7627751468874658854887788379999500023588446899889999998699971110599963578
Q gi|254780913|r 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKS 76 (78)
Q Consensus 4 ~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~~~gk~~A~~v~~i~~~ 76 (78)
+|++.- ..+||||+.|| +++|||+....+.. ...|++|...+. .+++++.+.-+++|..+
T Consensus 4 ~G~i~~--~~~GfgFv~~d----~~~DifIp~~~l~~-----A~~GD~V~v~i~--~~~~~~eG~V~~Iler~ 63 (64)
T 2id0_A 4 EGVVKA--TEKGFGFLEVD----AQKSYFIPPPQXKK-----VXHGDRIIAVIH--SEKERESAEPEELVEPF 63 (64)
T ss_dssp EEEEEC--CSSSCEEEECS----SSCEEEECHHHHTT-----SCTTCEEEEEEE--CCSSSCEEEEEEEEECS
T ss_pred EEEEEE--ECCCEEEEEEC----CCCCEEECHHHHCC-----CCCCCEEEEEEE--CCCCCCCEEEEEEEEEC
T ss_conf 999999--78942899758----98888999899804-----889999999996--57998607999999978
No 15
>>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, structural genomics, oxford protein production facility, OPPF; 2.60A {Neisseria meningitidis MC58} (A:40-67)
Probab=97.49 E-value=8.7e-05 Score=47.30 Aligned_cols=27 Identities=30% Similarity=0.405 Sum_probs=24.1
Q ss_pred CCCCCCCEEEEEEEECCCCCCCCCEEEEE
Q ss_conf 44689988999999869997111059996
Q gi|254780913|r 44 FNLTEGQLVTYDYVQNDANGKYSAENLKL 72 (78)
Q Consensus 44 ~~l~~G~~V~F~i~~~~~~gk~~A~~v~~ 72 (78)
++|.+||+|+|++.+++++ +||.||+.
T Consensus 1 ktL~EgQ~VeFev~~G~KG--pqA~nV~~ 27 (28)
T 3cam_A 1 KTLKEGQRVSFDVTTGPKG--KQAANIQA 27 (28)
T ss_dssp SSCCTTCEEEEEEEEETTE--EEEEEEEE
T ss_pred CCCCCCCEEEEEEEECCCC--CEEEEEEC
T ss_conf 8589999999999989899--57027992
No 16
>>1a62_A RHO; transcription termination, termination, RNA binding domain, transcription regulation, OB fold, F1-ATPase; 1.55A {Escherichia coli} (A:)
Probab=95.34 E-value=0.022 Score=33.92 Aligned_cols=59 Identities=17% Similarity=0.358 Sum_probs=39.5
Q ss_pred CCCCEEEEEE--CCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCC-CCEEEEEC
Q ss_conf 6887465885--48877883799995000235884468998899999986999711-10599963
Q gi|254780913|r 12 PDKGYGFITP--EGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY-SAENLKLV 73 (78)
Q Consensus 12 ~~kGfGFI~~--d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~~~gk~-~A~~v~~i 73 (78)
...||||+.. .+..-+..||||..|-|+..+ |+.|+.|+=.+..-..+-|+ +...|.-+
T Consensus 58 ~~dG~GFLR~~~~ny~~~~~DvyVs~sqIrrf~---LR~Gd~I~G~vr~p~~~ek~~aL~~V~~V 119 (130)
T 1a62_A 58 LQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFN---LRTGDTISGKIRPPKEGERYFALLKVNEV 119 (130)
T ss_dssp CTTSCEEEECGGGTTCCCTTCEEECHHHHHHTT---CCTTCEEEEEEECCCTTCCSEEEEEEEEE
T ss_pred CCCCCCEEECCCCCCCCCCCCEEECHHHHHHHC---CCCCCEEEEEEECCCCCCCCHHHEEEHHH
T ss_conf 468731564576678999656332899999848---98552789998778888764223241340
No 17
>>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold, motor, ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A (A:1-141)
Probab=95.25 E-value=0.031 Score=33.07 Aligned_cols=60 Identities=17% Similarity=0.347 Sum_probs=39.5
Q ss_pred CCCCEEEEEE--CCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCC-CCEEEEECC
Q ss_conf 6887465885--48877883799995000235884468998899999986999711-105999635
Q gi|254780913|r 12 PDKGYGFITP--EGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY-SAENLKLVP 74 (78)
Q Consensus 12 ~~kGfGFI~~--d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~~~gk~-~A~~v~~i~ 74 (78)
...||||+.. .+..-+..||||..|-|+..+ |+.|+.|+=.+..-..+-|+ +...|.-+.
T Consensus 61 ~~~g~GFLR~~~~ny~~~~~DvyVs~~qIrrf~---Lr~Gd~v~G~~r~p~~~ek~~~l~~v~~Vn 123 (141)
T 3ice_A 61 LQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFN---LRTGDTISGKIRPPKEGERYFALLKVNEVN 123 (141)
T ss_dssp CTTSCEEEECGGGTTCCCTTCEEBCHHHHHHHT---CCTTCEEEEEEECCCSSCCSEEEEEEEEES
T ss_pred CCCCCEEEECCCCCCCCCCCCEEECHHHHHHHC---CCCCCEEEEEEECCCCCCCCCCHHHHHHHC
T ss_conf 589975841775588999888326889997728---766866666653787787775046465404
No 18
>>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae TIGR4} (A:65-135)
Probab=93.04 E-value=0.14 Score=29.36 Aligned_cols=51 Identities=8% Similarity=0.091 Sum_probs=35.7
Q ss_pred CCCEEEEEECCCCCC--CCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCE
Q ss_conf 887465885488778--83799995000235884468998899999986999711105
Q gi|254780913|r 13 DKGYGFITPEGSTES--GDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAE 68 (78)
Q Consensus 13 ~kGfGFI~~d~~~d~--g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~~~gk~~A~ 68 (78)
.+.||--.. -| ++|+|+|+|.+...-...+++|+++...+-. ++.||..|.
T Consensus 17 ~~~~GaFvd----~Glp~KD~Lvp~~e~~~~~~~~~~~Gd~~~V~l~~-D~~gRl~~s 69 (71)
T 3go5_A 17 RKDLGVFVD----TGLPDKEIVVSLDILPELKELWPKKGDQLYIRLEV-DKKDRIWGL 69 (71)
T ss_dssp ETTTEEEEE----CSCTTCCEEEEGGGSCSSGGGSCCTTCEEEEEEEE-CTTSCEEEE
T ss_pred ECCCCEEEE----ECCCCCCCCCCHHHCCCCCCCCCCCCCEEEEEEEE-CCCCCEEEE
T ss_conf 558408999----27885103350665663531277688199999998-377857877
No 19
>>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli K12} (A:84-178)
Probab=90.70 E-value=1 Score=24.59 Aligned_cols=66 Identities=11% Similarity=0.039 Sum_probs=43.7
Q ss_pred EEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECC-CC-CCCCCEEEEECCCCC
Q ss_conf 75146887465885488778837999950002358844689988999999869-99-711105999635788
Q gi|254780913|r 8 KWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND-AN-GKYSAENLKLVPKSS 77 (78)
Q Consensus 8 Kwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~-~~-gk~~A~~v~~i~~~~ 77 (78)
=-|-..+|+|||.|++.. -..+|++-.+.. ....+++||.|..++..-+ ++ ..+++.-+++|..+.
T Consensus 5 G~~~~~~~~~~v~P~d~~-~~~~i~i~~~~~---~~~~a~~Gd~V~veI~~~p~~~~~~~~g~I~evlG~~~ 72 (95)
T 2id0_A 5 GKVQGKNDRLAIVPDHPL-LKDAIPCRAARG---LNHEFKEGDWAVAEXRRHPLKGDRSFYAELTQYITFGD 72 (95)
T ss_dssp EEEEEETTEEEEEESSTT-CCSCEECCBCSS---CCCCCCSSCEEEEEEEECGGGTCSSCEEEEEEEEECTT
T ss_pred EEEEEECCEEEEEECCCC-CCCCEECCCCCC---CCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEEECCCC
T ss_conf 999998989999878887-876565145555---44456799899999953777677886327999944666
No 20
>>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii} (A:)
Probab=87.46 E-value=0.69 Score=25.54 Aligned_cols=64 Identities=14% Similarity=0.113 Sum_probs=42.9
Q ss_pred CCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECC-CCCCCCCEEEEEC
Q ss_conf 7762775146887465885488778837999950002358844689988999999869-9971110599963
Q gi|254780913|r 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND-ANGKYSAENLKLV 73 (78)
Q Consensus 3 ~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~-~~gk~~A~~v~~i 73 (78)
.+|+|.-.. =||.++.- .++-+-|+|.|.+.....+.++.||+|...+..-+ ..++ ....++.+
T Consensus 9 ~~g~V~~v~---~~G~fV~l---~~~i~Gli~~~~ls~~~~~~~~vG~~v~v~V~~vd~~~~~-i~lS~k~~ 73 (80)
T 2k52_A 9 YKGVVTRIE---KYGAFINL---NEQVRGLLRPRDMISLRLENLNVGDEIIVQAIDVRPEKRE-IDFKYIPL 73 (80)
T ss_dssp EEEEEEEEE---TTEEEEEE---ETTEEEEECGGGCSSCCGGGCCTTCEEEEEEEEEETTTTE-EEEEECSC
T ss_pred EEEEEEEEE---CCEEEEEE---CCCEEEEEEHHHCCCCCCCCCEECEEEEEEEEEEECCCCE-EEEEEECC
T ss_conf 999999997---87799996---5557899991262564233640110299999999998899-98998720
No 21
>>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A (L:43-126,L:209-218)
Probab=86.70 E-value=2.4 Score=22.47 Aligned_cols=66 Identities=21% Similarity=0.222 Sum_probs=42.9
Q ss_pred CCCEEEEEECCCCEE-EEEECCCCCCCCEEEEEEEECCCCC-------------CCCCCCCCEEEEEEEECCCCCCCCCE
Q ss_conf 776277514688746-5885488778837999950002358-------------84468998899999986999711105
Q gi|254780913|r 3 HRGSIKWYNPDKGYG-FITPEGSTESGDDVFLHRSAVASAG-------------LFNLTEGQLVTYDYVQNDANGKYSAE 68 (78)
Q Consensus 3 ~~G~VKwfn~~kGfG-FI~~d~~~d~g~DvFvH~s~i~~~g-------------~~~l~~G~~V~F~i~~~~~~gk~~A~ 68 (78)
.+|+|+-.-+- +|| ||.. +.+.+-|+|+|++...- .+.++.||+|...+..-+... .-.
T Consensus 7 ~~G~V~~I~~f-~~GaFVel----~~~~~Glihis~l~~~~~~~~~~~~~~~~~~~~~~~Gd~V~V~V~~vd~~~--~~i 79 (94)
T 2bx2_L 7 YKGKITRIEPS-LEAAFVDY----GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGN--KGA 79 (94)
T ss_dssp EEEEEEEEETT-TTEEEEES----SSSSCEEEEGGGSCGGGCC-------CCCGGGTCCTTCEEEEEEEECCCTT--CCC
T ss_pred EEEEEEECCCC-CCEEEEEE----CCCCCEEEEHHHCCHHHCCCCCCCCCCCCHHHHCCCCCEEEEEECCCCCCC--CCC
T ss_conf 99999532788-76689950----899745888588385550455333456566773579988889851454445--575
Q ss_pred EEEECCC
Q ss_conf 9996357
Q gi|254780913|r 69 NLKLVPK 75 (78)
Q Consensus 69 ~v~~i~~ 75 (78)
.++++|.
T Consensus 80 ~lsl~~~ 86 (94)
T 2bx2_L 80 ALTTFPA 86 (94)
T ss_dssp EEESSCS
T ss_pred CCCCCCC
T ss_conf 5334598
No 22
>>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} (A:54-135)
Probab=85.69 E-value=2.1 Score=22.86 Aligned_cols=58 Identities=21% Similarity=0.104 Sum_probs=39.6
Q ss_pred CCCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCC-----CCCCCCCEEEEEEEECCCCCCC
Q ss_conf 877627751468874658854887788379999500023588-----4468998899999986999711
Q gi|254780913|r 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL-----FNLTEGQLVTYDYVQNDANGKY 65 (78)
Q Consensus 2 m~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~-----~~l~~G~~V~F~i~~~~~~gk~ 65 (78)
..+|+|+-.. -||.... ..++-+-|+|.|.+....+ ..+..||.|...+..-++.++.
T Consensus 7 ~v~g~V~~i~---~~g~~V~---l~~~~~g~i~~sel~~~~~~~~~~~~~~~Gd~i~v~V~~vd~~~ri 69 (82)
T 2ba0_A 7 VVIGIIREVA---ANGWAVD---IYSPYQAFLPVSENPEMKPNKKPNEVLDIGDAIIAKVLNIDPKMKV 69 (82)
T ss_dssp EEEEEEEEEC---SSEEEEE---CSSSSCEEEEGGGCTTCCTTSCGGGTCCTTCEEEEEEEEECTTCCE
T ss_pred EEEEEEEEEC---CCEEEEE---CCCCCCEEEEHHHCCCCCHHHCHHHHCCCCCEEEEEEEEECCCCCE
T ss_conf 9999995761---6519998---0897337987676766101206354247999999999995689867
No 23
>>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} (A:642-785)
Probab=83.37 E-value=2.1 Score=22.84 Aligned_cols=65 Identities=18% Similarity=0.234 Sum_probs=43.5
Q ss_pred CCCCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCC----CCCCCCCEEEEEEEECCCCCCCCCEEEEEC
Q ss_conf 9877627751468874658854887788379999500023588----446899889999998699971110599963
Q gi|254780913|r 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL----FNLTEGQLVTYDYVQNDANGKYSAENLKLV 73 (78)
Q Consensus 1 mm~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~----~~l~~G~~V~F~i~~~~~~gk~~A~~v~~i 73 (78)
++.+|+|+-.. -||.++. ...+-+-|+|.|.+...-. ..+..||.|...|..-++..+ ...+.+.
T Consensus 15 ~iv~G~V~~v~---~~G~fV~---l~~~i~Glv~~sels~~~~~~~~~~~~~G~~v~vkV~~vd~~~~--~i~LS~~ 83 (144)
T 3bzc_A 15 MVLEGVVTNVT---NFGAFVD---IGVHQDGLVHISALSEKFVKDPYEVVKAGDIVKVKVMEVDIPRN--RVGLSMR 83 (144)
T ss_dssp CBCCCEEEEEE---TTEEEEE---CSSSSEEEEETTTSCSSCCSCHHHHCCTTCCCCCBEEEEETTTT--EEEECCS
T ss_pred CEEEEEEEEEC---CCCEEEE---ECCCCCEEEEHHHCCCCCCCCHHHCCCCCCEEEEEEEEEECCCC--EEEEEEC
T ss_conf 88999999875---7856998---06997216778854777789988849999989999999864678--8998842
No 24
>>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} (A:1-147)
Probab=83.32 E-value=2.5 Score=22.42 Aligned_cols=58 Identities=16% Similarity=-0.015 Sum_probs=40.4
Q ss_pred CCCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCC--------CCCCCCCCEEEEEEEECCCCCCC
Q ss_conf 87762775146887465885488778837999950002358--------84468998899999986999711
Q gi|254780913|r 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG--------LFNLTEGQLVTYDYVQNDANGKY 65 (78)
Q Consensus 2 m~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g--------~~~l~~G~~V~F~i~~~~~~gk~ 65 (78)
+.+|+|+- -.-||++..- ..+.+-|+|+|.+...- ...+..||.|...+..-++.++.
T Consensus 69 iv~G~V~~---i~~~G~fV~i---~~~~~gli~~sei~~~~~~~~~~~~~~~~~vGd~V~~~V~~v~~~~~i 134 (147)
T 2z0s_A 69 VVIGLIQS---VGIMNWFVDI---NSPYVAVLSVQDFLGRPFNPAVDDMQSLLKVGDYIKAKVVAFDKTRSP 134 (147)
T ss_dssp CEEEEEEE---ECSSEEEEEC---SSSSCEEEEHHHHHTSCCCTTTTCCTTSSCTTCEEEEEEEEECTTSCE
T ss_pred EEEEEEEE---EECCEEEEEC---CCCCEEEECHHHCCCCCCCCHHHHHHHCCCCCCEEEEEEEECCCCCCE
T ss_conf 99999989---7267199985---897203726899075332101566532379998899999974687645
No 25
>>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} (G:123-209)
Probab=83.28 E-value=3 Score=22.00 Aligned_cols=57 Identities=16% Similarity=0.103 Sum_probs=38.9
Q ss_pred CCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCC---CCCCCCCCEEEEEEEECCCCCCCC
Q ss_conf 762775146887465885488778837999950002358---844689988999999869997111
Q gi|254780913|r 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG---LFNLTEGQLVTYDYVQNDANGKYS 66 (78)
Q Consensus 4 ~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g---~~~l~~G~~V~F~i~~~~~~gk~~ 66 (78)
.|+|+--. .||+...= ..+.+-|+|+|++...- ...|+.||.|...+..-++.++..
T Consensus 10 ~G~V~~i~---~~g~fVdi---~~~~~g~l~is~~~~~~~~~~~~l~~Gd~V~a~V~~vd~~~~i~ 69 (87)
T 2nn6_G 10 IGIVTAKS---GDIFKVDV---GGSEPASLSYLSFEGATKRNRPNVQVGDLIYGQFVVANKDMEPE 69 (87)
T ss_dssp EEEEEEEE---TTEEEEEC---SSSSCCCEESCSSSCCSSCSSSSSCTTCEEEEEEEECCTTSCCE
T ss_pred EEEEEEEC---CCEEEEEC---CCCCCEEECCHHCCCCHHCCCCCCCCCCEEEEEEEEECCCCCEE
T ss_conf 99998982---87389984---89850487502067700104766899999999999945899758
No 26
>>2ckz_B C25, DNA-directed RNA polymerase III 25 KD polypeptide; multiprotein complex, nucleotidyltransferase, nuclear protein, hypothetical protein; 3.2A {Saccharomyces cerevisiae} (B:81-218)
Probab=81.58 E-value=2.4 Score=22.52 Aligned_cols=53 Identities=11% Similarity=0.120 Sum_probs=35.3
Q ss_pred CCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCC-----------------CCCCCCCCCEEEEEEEECC
Q ss_conf 776277514688746588548877883799995000235-----------------8844689988999999869
Q gi|254780913|r 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA-----------------GLFNLTEGQLVTYDYVQND 60 (78)
Q Consensus 3 ~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~-----------------g~~~l~~G~~V~F~i~~~~ 60 (78)
.+|+|+-.. -||+.+.- .+.+.|.|+|+|.|... .......||.|++.+..-+
T Consensus 5 ~~G~V~~v~---~~GifV~L--~~~~~egli~~s~L~d~~~~~~~~~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd 74 (138)
T 2ckz_B 5 VTGWISKCT---AEGIKVSL--LGIFDDIFIPQNMLFEGCYYTPEESAWIWPMDEETKLYFDVNEKIRFRIEREV 74 (138)
T ss_dssp EEEEEEEEE---TTEEEEEC--TTSCCCEEEETTTSCTTCEEETTTTEEEEECC--CEEEECTTCEEEEEEEEEE
T ss_pred EEEEEEEEC---CCEEEEEE--CCCCCCEEEEHHHCCCCCEECHHCCEEEEECCCCCCEEECCCCEEEEEEEEEE
T ss_conf 999997151---65499993--38736538507767898579311255997248745609758998999999999
No 27
>>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli K12} (A:559-644)
Probab=81.32 E-value=4.2 Score=21.13 Aligned_cols=55 Identities=7% Similarity=0.006 Sum_probs=36.5
Q ss_pred CCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCC----------------CCCCCCCCEEEEEEEECCCC
Q ss_conf 7762775146887465885488778837999950002358----------------84468998899999986999
Q gi|254780913|r 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----------------LFNLTEGQLVTYDYVQNDAN 62 (78)
Q Consensus 3 ~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g----------------~~~l~~G~~V~F~i~~~~~~ 62 (78)
.+|+|.-.. -||+.+.- .+.+.|-|+|.|.|...- .+.++.||+|...+..-+..
T Consensus 6 ~~g~V~~I~---~~G~fV~l--~~~~~eGli~~s~l~~~~~~~~~~~~~l~~~~~~~~~~~~Gd~V~vkv~~vd~~ 76 (86)
T 2id0_A 6 FAAEIVDIS---RGGXRVRL--VDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRXE 76 (86)
T ss_dssp EEEEEEEEE---TTEEEEEE--TTTCCEEEEEGGGTCSCGGGEEEETTTTEEEETTEEEEETTCEEEEEEEEEETT
T ss_pred EEEEEEEEE---ECCEEEEE--ECCCEEEEEEHHHCCCCCCEEEEECCCCEEEECCCEEEECCCEEEEEEEEEECC
T ss_conf 899998897---06399998--269649999856647776448980222156405987995799999999998345
No 28
>>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} (A:1-90)
Probab=80.98 E-value=4.1 Score=21.21 Aligned_cols=56 Identities=11% Similarity=-0.062 Sum_probs=39.1
Q ss_pred CCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCC----CCCCCCCCCEEEEEEEECCCCCC
Q ss_conf 776277514688746588548877883799995000235----88446899889999998699971
Q gi|254780913|r 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA----GLFNLTEGQLVTYDYVQNDANGK 64 (78)
Q Consensus 3 ~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~----g~~~l~~G~~V~F~i~~~~~~gk 64 (78)
..|+|+- -..||++..- .++-+-|+|+|.+... -...+..||.|...+..-++.++
T Consensus 11 v~G~V~~---v~~~g~~V~l---~~~~~g~l~~s~~~~~~~~~~~~~~~~Gd~v~~~V~~vd~~~~ 70 (90)
T 2ja9_A 11 VIGVIIG---TFSDSYKVSL---QNFSSSVSLSYMAFPNASKKNRPTLQVGDLVYARVCTAEKELE 70 (90)
T ss_dssp EEEEEEE---ECSSEEEEES---STTSCCEEEETTSSTTCCSSSCCCCCTTCEEEEEEEECCTTSC
T ss_pred EEEEEEE---ECCCEEEEEE---CCCCHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCC
T ss_conf 9999989---7288089993---8973654076554666122345458989899999999258885
No 29
>>2b8k_G B16, DNA-directed RNA polymerase II 19 kDa polypeptide; DNA-dependent RNA polymerase, cellular RNA polymerase; 4.15A {Saccharomyces cerevisiae} (G:83-215)
Probab=79.64 E-value=4.8 Score=20.81 Aligned_cols=51 Identities=12% Similarity=0.012 Sum_probs=35.5
Q ss_pred CCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCC--------------CCCCCCCEEEEEEEECC
Q ss_conf 77627751468874658854887788379999500023588--------------44689988999999869
Q gi|254780913|r 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL--------------FNLTEGQLVTYDYVQND 60 (78)
Q Consensus 3 ~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~--------------~~l~~G~~V~F~i~~~~ 60 (78)
..|+|+-.. .||+.+.- ++-+-|+|+|.|...-. +.+..||.|.+.+..-+
T Consensus 5 ~~G~V~~i~---~~G~fV~l----~~~~Gli~~s~l~~~~~~d~~~~~~~~~~~~~~~~~G~~v~vkVl~vd 69 (133)
T 2b8k_G 5 VDGTVVSCS---QHGFEVQV----GPMKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGCI 69 (133)
T ss_dssp EEEEEEEEE---TTEEEEEC----TTSEEEEEGGGSCSSCCCBSSCSSCEEECSSCEEETTCEEEEEEEEEE
T ss_pred EEEEEEEEC---CCEEEEEE----CCCEEEEEEEECCCCCCCCCCCCEEEEECCCCEEECCCEEEEEEEEEE
T ss_conf 999999762---66489982----071689661006775421600052789438829937999999999986
No 30
>>2c35_B Human RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} (B:81-172)
Probab=78.53 E-value=3.1 Score=21.90 Aligned_cols=66 Identities=12% Similarity=0.088 Sum_probs=40.1
Q ss_pred CCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCC----------------CCCCCCCCEEEEEEEECCCCCCCCC
Q ss_conf 762775146887465885488778837999950002358----------------8446899889999998699971110
Q gi|254780913|r 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----------------LFNLTEGQLVTYDYVQNDANGKYSA 67 (78)
Q Consensus 4 ~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g----------------~~~l~~G~~V~F~i~~~~~~gk~~A 67 (78)
+|+|.--. -||+...- ++-|-|+|.|.|...- ...++.||+|...+..-+...+..+
T Consensus 6 ~G~V~~v~---~~G~FV~l----~~~eGli~~s~l~~~~~~~~~~~~~~~~~~~~~~~~~vGd~V~v~V~~vd~~~~~i~ 78 (92)
T 2c35_B 6 DAVVTQVN---KVGLFTEI----GPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIF 78 (92)
T ss_dssp EEEEEEEE---TTEEEEEE----TTEEEEEEGGGSCTTEEEESSSSSCEEEETTSCSEEETTCEEEEEEEEEEEETTEEE
T ss_pred EEEEEEEC---CCEEEEEE----ECCCEEECCHHCCCEEEECCCCCCEEEEECCCCCEECCCCEEEEEEEEEEECCCCCE
T ss_conf 99999872---78699996----063112010110230320345653279831577088899999999999983437847
Q ss_pred EEEEECCCC
Q ss_conf 599963578
Q gi|254780913|r 68 ENLKLVPKS 76 (78)
Q Consensus 68 ~~v~~i~~~ 76 (78)
..+++..+.
T Consensus 79 ~~l~~~~~~ 87 (92)
T 2c35_B 79 AIGSLMDDY 87 (92)
T ss_dssp EEEECCSTT
T ss_pred EEEEECCCC
T ss_conf 999989998
No 31
>>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, cytoplasm, RNA-binding, RNA binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae} (J:377-479)
Probab=77.78 E-value=5.5 Score=20.48 Aligned_cols=62 Identities=3% Similarity=-0.145 Sum_probs=43.5
Q ss_pred EEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEEC-CCCCCCCCEEEEECCCCCC
Q ss_conf 514688746588548877883799995000235884468998899999986-9997111059996357889
Q gi|254780913|r 9 WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN-DANGKYSAENLKLVPKSSN 78 (78)
Q Consensus 9 wfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~-~~~gk~~A~~v~~i~~~~~ 78 (78)
-+...++|+|+.|++. .-+++++-.+.. ...+|+.|..++..- ...+.++|.-+++|..+.+
T Consensus 14 ~~~~~~~~~~~~P~d~--r~p~~~i~~~~~------~~~~g~~V~v~I~~~p~~~~~~~g~i~~vlG~~~d 76 (103)
T 2wp8_J 14 PQSSSTQNVFVILMDK--CLPKVRIRTRRA------AELLDKRIVISIDSWPTTHKYPLGHFVRDLGTIES 76 (103)
T ss_dssp TTCCSCEEEEEEESST--TSCCEEEEETTT------TGGGGEEEEEEEEECCTTCSSCEEEEEEEEEESSC
T ss_pred CCCCCCCEEEEEECCC--CCCCEEECCCCC------CHHCCCEEEEEEEECCCCCCCCEEEEEEECCCCCC
T ss_conf 5556665079977788--778788433525------02169989999975578888962999998489997
No 32
>>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae TIGR4} (A:136-219)
Probab=77.73 E-value=5.6 Score=20.48 Aligned_cols=51 Identities=16% Similarity=0.028 Sum_probs=33.5
Q ss_pred CCEEEEEECCCCEEEE-EECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCC-CCC
Q ss_conf 7627751468874658-854887788379999500023588446899889999998699-971
Q gi|254780913|r 4 RGSIKWYNPDKGYGFI-TPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA-NGK 64 (78)
Q Consensus 4 ~G~VKwfn~~kGfGFI-~~d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~~-~gk 64 (78)
+|+|+- -.-||+. ..+ +...+-|+|.|.+. ..++.||.|+..+..-++ +++
T Consensus 22 ~g~V~~---i~~~G~fV~l~---~~~~eGlv~~sel~----~~~~vGd~v~v~v~~vd~~~~~ 74 (84)
T 3go5_A 22 PAIVYR---LKLSGTFVYLP---ENNXLGFIHPSERY----AEPRLGQVLDARVIGFREVDRT 74 (84)
T ss_dssp EEEEEE---EETTEEEEEET---TTTEEEEECGGGCS----SCCCTTCEEEEEEEEEETTTTE
T ss_pred EEEEEE---EECCCCEEEEC---CCCEEEEECCCCCC----CCCCCCCEEEEEEEEEECCCCE
T ss_conf 999999---97487189843---78789996354124----4467574899999999843767
No 33
>>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} (I:71-155)
Probab=77.72 E-value=3.3 Score=21.75 Aligned_cols=58 Identities=16% Similarity=0.089 Sum_probs=39.6
Q ss_pred CCCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCC-------CCCCCCCCCEEEEEEEECCCCCCC
Q ss_conf 8776277514688746588548877883799995000235-------884468998899999986999711
Q gi|254780913|r 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA-------GLFNLTEGQLVTYDYVQNDANGKY 65 (78)
Q Consensus 2 m~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~-------g~~~l~~G~~V~F~i~~~~~~gk~ 65 (78)
..+|+|+-.- -||....- ..+-+-|+|.|.+... -.+.++.||.|...+..-++.|+.
T Consensus 7 ~v~g~V~~v~---~~G~fV~i---~~~~~Gli~~s~i~~~~~~~~~~~~~~~~vGd~v~~~V~~vd~~~ki 71 (85)
T 2je6_I 7 IVIGLVEDVE---IYGWVVDI---KAPYKAYLPASNLLGRSINVGEDLRRYLDVGDYVIARIENFDRSIDP 71 (85)
T ss_dssp EEEEEEEEEC---SSEEEEEC---SSSSCEEEEHHHHHTSCCCTTCCCSSSCCTTCEEEEEEEEEETTEEE
T ss_pred EEEEEEEEEE---CCEEEEEC---CCCCCCEEEHHHCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCCCE
T ss_conf 9999999933---54799984---89722240055425754245332586378999999999995577771
No 34
>>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A (A:151-239,A:464-723)
Probab=76.12 E-value=0.62 Score=25.79 Aligned_cols=63 Identities=19% Similarity=0.238 Sum_probs=41.9
Q ss_pred CCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCC----CCCCCCCEEEEEEEECCCCCCCCCEEEE
Q ss_conf 77627751468874658854887788379999500023588----4468998899999986999711105999
Q gi|254780913|r 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL----FNLTEGQLVTYDYVQNDANGKYSAENLK 71 (78)
Q Consensus 3 ~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~----~~l~~G~~V~F~i~~~~~~gk~~A~~v~ 71 (78)
.+|+|+- -+-||..+.- ..|.+-|+|+|.+..... ..+..||.|...+..-+.+||....-..
T Consensus 257 ~~g~V~~---I~~fGaFV~l---~~g~~GlihiSel~~~rv~~~~dv~~vGd~V~VkVi~iD~~grI~LS~k~ 323 (349)
T 3cdi_A 257 YTGKVTR---IVDFGAFVAI---GGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKE 323 (349)
T ss_dssp -------------------------------------------------------------------------
T ss_pred EEEEEEE---EEEEEEEEEE---CCCCCEEEEEECCCCCCCCCCCHHCCCCCEEEEEEEEECCCCCEEEEEHH
T ss_conf 9999999---9943299996---69994478702046756568301216898999999979899988877013
No 35
>>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=75.93 E-value=4.5 Score=20.97 Aligned_cols=57 Identities=14% Similarity=0.143 Sum_probs=36.4
Q ss_pred CCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCC-----CCCCCCCEEEEEEEECCCC
Q ss_conf 77627751468874658854887788379999500023588-----4468998899999986999
Q gi|254780913|r 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL-----FNLTEGQLVTYDYVQNDAN 62 (78)
Q Consensus 3 ~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~-----~~l~~G~~V~F~i~~~~~~ 62 (78)
.+|+|+-- .-||+...-.....|-+-|+|.|.|....+ ..++.||.|.+.+..-+++
T Consensus 16 v~g~V~~i---~~~G~fV~l~~~~~gi~Gli~~s~ls~~~~~~~~~~~~~vGd~v~v~V~~vd~~ 77 (103)
T 2eqs_A 16 YNGKVTSI---MQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSKGQRVKVKVLSFTGT 77 (103)
T ss_dssp EEEEEEEE---CSSCEEEEECSSSSCCEEEECGGGTSSSSCCCCHHHHCCTTCEEEEEEEEEETT
T ss_pred EEEEEEEE---ECCEEEEEECCCCCCEECEECHHHEECCCCCCCHHHCCCCCCEEEEEEEEEECC
T ss_conf 99999999---536589994586431211001523003334258623057999999999999688
No 36
>>1y14_B B16, RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} (B:83-171)
Probab=73.59 E-value=6.2 Score=20.19 Aligned_cols=53 Identities=11% Similarity=0.013 Sum_probs=36.4
Q ss_pred CCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCC--------------CCCCCCCCEEEEEEEECCCC
Q ss_conf 7762775146887465885488778837999950002358--------------84468998899999986999
Q gi|254780913|r 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG--------------LFNLTEGQLVTYDYVQNDAN 62 (78)
Q Consensus 3 ~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g--------------~~~l~~G~~V~F~i~~~~~~ 62 (78)
..|+|+--. -||+...- ++-+-|+|.|.+...- -..++.||+|...+..-+..
T Consensus 5 ~~g~V~~v~---~~G~FV~l----~~~eg~v~~s~l~~d~~~~~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~ 71 (89)
T 1y14_B 5 VDGTVVSCS---QHGFEVQV----GPMKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGCISQ 71 (89)
T ss_dssp EEEEEEEEE---TTEEEEEE----TTEEEEEEGGGSCTTCEECC-----CEECSSCEECTTCEEEEEEEEEEEE
T ss_pred EEEEEEEEE---CCCEEEEE----CCCCEEEEEEECCCCCCCCHHHCEEEEECCCEEECCCCEEEEEEEEEECC
T ss_conf 999999981---57389990----56217877320033211475672789841881991899999999999806
No 37
>>2nn6_H Exosome complex exonuclease RRP4; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} (H:92-183)
Probab=72.93 E-value=3.1 Score=21.86 Aligned_cols=56 Identities=20% Similarity=0.087 Sum_probs=37.9
Q ss_pred CCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCC--------------CCCCCCCCCEEEEEEEECCCCCC
Q ss_conf 776277514688746588548877883799995000235--------------88446899889999998699971
Q gi|254780913|r 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA--------------GLFNLTEGQLVTYDYVQNDANGK 64 (78)
Q Consensus 3 ~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~--------------g~~~l~~G~~V~F~i~~~~~~gk 64 (78)
-.|+|.-- ..||+...= ....|-|+|+|.+... ....++.||.|...+..-++.++
T Consensus 8 v~G~V~~v---~~~g~fV~i---~~~~~gllhis~i~~~~~~~~~~~~~~~~~~~~~~~~Gd~V~~rV~~vd~~~k 77 (92)
T 2nn6_H 8 VVGRITEV---QQKRWKVET---NSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEVQAVFSDGA 77 (92)
T ss_dssp CCEEEEEE---ETTEEEEEC---SSSSCEEEESSCCC-------------CHHHHHHSCSSCEECCEEEEEETTTE
T ss_pred EEEEEEEE---ECCEEEEEC---CCCCCCEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCEEEEEEEECCCCCC
T ss_conf 99999887---255599983---88655354242013676110376753225687378999999999876388786
No 38
>>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} (P:129-215)
Probab=72.58 E-value=7 Score=19.90 Aligned_cols=51 Identities=10% Similarity=-0.042 Sum_probs=36.2
Q ss_pred CCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCC
Q ss_conf 776277514688746588548877883799995000235884468998899999986999
Q gi|254780913|r 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 (78)
Q Consensus 3 ~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~~~ 62 (78)
.+|+|+-.+ -||.+.. -++-+-|+|.|.+... ..+..||+|.+.+..-++.
T Consensus 10 v~g~V~~i~---~~G~~V~----l~~~~g~ip~~e~~~~--~~~~~G~~i~~~v~~vd~~ 60 (87)
T 1hh2_P 10 TTAEVIRVM---GEWADIR----IGKLETRLPKKEWIPG--EEIKAGDLVKVYIIDVVKT 60 (87)
T ss_dssp EEEEEEEEC---SSEEEEE----ETTEEEEEEGGGSCTT--CCCCTTCEEEEEEEEEEEE
T ss_pred EEEEEEEEE---CCCEEEE----CCCEEEEECHHHCCCC--CCCCCCCEEEEEEEEEEEC
T ss_conf 999999996---1435996----1861687177886986--5679999899999999874
No 39
>>3h0g_G DNA-directed RNA polymerase II subunit RPB7; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} (G:84-172)
Probab=71.39 E-value=6.7 Score=20.02 Aligned_cols=63 Identities=14% Similarity=0.117 Sum_probs=37.7
Q ss_pred CCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCC--------------CCCCCCCEEEEEEEECCCC-CCCCCE
Q ss_conf 7627751468874658854887788379999500023588--------------4468998899999986999-711105
Q gi|254780913|r 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL--------------FNLTEGQLVTYDYVQNDAN-GKYSAE 68 (78)
Q Consensus 4 ~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~--------------~~l~~G~~V~F~i~~~~~~-gk~~A~ 68 (78)
.|+|+--. -||+...- ++-|-|+|.|.+...-. ..++.||.|...+..-+.. ++. ..
T Consensus 6 ~G~V~~i~---~~G~FV~l----~~~eG~v~~s~l~~d~~~~~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~~i-~l 77 (89)
T 3h0g_G 6 DAIVTTVN---KMGFFANI----GPLNVFVSSHLVPPDMKFDPTANPPNYSGEDQVIEKGSNVRLKIVGTRTDATEI-FA 77 (89)
T ss_dssp ECCCCEEE---TTEEECCB----TTBCCEEEGGGSCTTCCCBSSSSSCBEESSSCEECSSCCEEEEEEEEEESSSCE-EE
T ss_pred EEEEEEEE---CCEEEEEE----ECCCEEEEHHHCCCCCCCCHHHCEEEEEECCEEECCCCEEEEEEEEEECCCCCC-EE
T ss_conf 99996880---55599994----064157441211554311600444898618819948999999999996352783-79
Q ss_pred EEEECC
Q ss_conf 999635
Q gi|254780913|r 69 NLKLVP 74 (78)
Q Consensus 69 ~v~~i~ 74 (78)
.++...
T Consensus 78 ~l~~~~ 83 (89)
T 3h0g_G 78 IATMKE 83 (89)
T ss_dssp EEECCS
T ss_pred EEEECC
T ss_conf 999779
No 40
>>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metalloprotein, metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X (X:)
Probab=64.06 E-value=9.1 Score=19.28 Aligned_cols=31 Identities=16% Similarity=0.385 Sum_probs=22.6
Q ss_pred CCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEC
Q ss_conf 588446899889999998699971110599963
Q gi|254780913|r 41 AGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73 (78)
Q Consensus 41 ~g~~~l~~G~~V~F~i~~~~~~gk~~A~~v~~i 73 (78)
.-+..|.+|++|.|.+...+ +.+....|+..
T Consensus 49 ~~l~~l~~Gd~V~F~~~~~~--~~~~i~~i~~~ 79 (80)
T 2qcp_X 49 TKMSEIKTGDKVAFNFVQQG--NLSLLQDIKVS 79 (80)
T ss_dssp CEECCCCTTCEEEEEEEEET--TEEEEEEEEEC
T ss_pred HHHHCCCCCCEEEEEEEEEC--CEEEEEEEEEC
T ss_conf 79735999999999999949--96999999975
No 41
>>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} (A:)
Probab=63.23 E-value=9 Score=19.31 Aligned_cols=55 Identities=16% Similarity=0.164 Sum_probs=36.7
Q ss_pred CCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCC-----CCCCCCCCCEEEEEEEECCCC
Q ss_conf 776277514688746588548877883799995000235-----884468998899999986999
Q gi|254780913|r 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA-----GLFNLTEGQLVTYDYVQNDAN 62 (78)
Q Consensus 3 ~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~-----g~~~l~~G~~V~F~i~~~~~~ 62 (78)
.+|+|+-- .-||+++.- .+.+-+-|+|+|.|... --..+..||.|...+..-+..
T Consensus 25 v~g~V~~v---~~~G~fV~l--~~~~~~g~i~~sels~~~~~~~~~~~~~vGd~i~v~V~~vd~~ 84 (119)
T 1wi5_A 25 LTGTVSSL---EDHGYLVDI--GVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVKGN 84 (119)
T ss_dssp EEEEEEEE---CSSEEEEEC--CCSSCEEEEEHHHHHHHHHHHSSSCCCCTTCEEEEEEEECCTT
T ss_pred EEEEEEEE---EEEEEEEEC--CCCCCEEEEEHHHHCCCCCCCCCCCEEEEEEEEEEEEEEEECC
T ss_conf 99999988---401899951--4554027876999352112347300021001899999998379
No 42
>>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} (E:81-187)
Probab=62.51 E-value=12 Score=18.52 Aligned_cols=50 Identities=18% Similarity=0.074 Sum_probs=35.2
Q ss_pred CCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCC---------------CCCCCCCCEEEEEEEECC
Q ss_conf 762775146887465885488778837999950002358---------------844689988999999869
Q gi|254780913|r 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG---------------LFNLTEGQLVTYDYVQND 60 (78)
Q Consensus 4 ~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g---------------~~~l~~G~~V~F~i~~~~ 60 (78)
+|+|.-.. .||+.+.- ++.|=|+|+|.|.... .+.+..||.|...+..-+
T Consensus 6 ~g~V~~i~---~~G~fV~l----~g~~Glv~is~l~~~~~~~~~~~~~~~~~~~~~~~~~Gd~v~vkV~~vd 70 (107)
T 1go3_E 6 EGEVVDVV---EFGSFVRL----GPLDGLIHVSQIMDDYVSYDPKREAIIGKETGKVLEIGDYVRARIVAIS 70 (107)
T ss_dssp EEEEEEEE---TTEEEEEC----SSSEEEEEGGGSCSSCEEECCC--CEEETTTCCEECTTCEEEEEEEEEE
T ss_pred EEEEEEEE---EEEEEEEE----CCCEEEEEEHHCCCCCEECCHHHCEECCCCCCEEEECCCEEEEEEEEEE
T ss_conf 99999997---32999995----5805999811328985865756651314333579908999999999980
No 43
>>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, periplasm, metal-binding, metal transport, copper tolerance, copper transport; 1.70A {Escherichia coli} PDB: 2vb3_X (X:)
Probab=59.30 E-value=12 Score=18.62 Aligned_cols=30 Identities=17% Similarity=0.391 Sum_probs=22.0
Q ss_pred CCCCCCCCCEEEEEEEECCCCCCCCCEEEEEC
Q ss_conf 88446899889999998699971110599963
Q gi|254780913|r 42 GLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73 (78)
Q Consensus 42 g~~~l~~G~~V~F~i~~~~~~gk~~A~~v~~i 73 (78)
-+..|++|++|.|.+...+ +.+....|+..
T Consensus 58 ~l~~~~~Gd~V~F~~~~~~--~~~~I~~i~~~ 87 (88)
T 2vb2_X 58 KMSEIKTGDKVAFNFVQQG--NLSLLQDIKVS 87 (88)
T ss_dssp EECCCCTTCEEEEEEEEET--TEEEEEEEEEC
T ss_pred HHHCCCCCCEEEEEEEEEC--CEEEEEEEEEC
T ss_conf 8734999999999999809--94999999976
No 44
>>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis} (A:)
Probab=58.21 E-value=8.2 Score=19.52 Aligned_cols=54 Identities=19% Similarity=0.206 Sum_probs=36.3
Q ss_pred CCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCC----CCCCCCCCEEEEEEEECCCC
Q ss_conf 7762775146887465885488778837999950002358----84468998899999986999
Q gi|254780913|r 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQNDAN 62 (78)
Q Consensus 3 ~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g----~~~l~~G~~V~F~i~~~~~~ 62 (78)
.+|+|+--. -||+++.- +.+-+-|+|.|.|.... ...+..|+.|.+.+..-+..
T Consensus 11 v~g~V~~v~---~~G~~V~l---~~~i~G~i~~sels~~~~~~~~~~~~~G~~i~~~V~~vd~~ 68 (130)
T 2k4k_A 11 YTGKVTGLQ---AYGAFVAL---DEETQGLVHISEVTHGFVKDINEHLSVGDEVQVKVLAVDEE 68 (130)
T ss_dssp EEEEEEEEE---TTEEEEEE---ETTEEEEEEGGGTSSSCCSCGGGTCCTTCEEEEEEEEEETT
T ss_pred EEEEEEEEE---CCEEEEEE---CCCCEEEEEEEEECCEECCCCCCCCCCCCEEEEEEEEEECC
T ss_conf 999999997---87699997---99958998730101000112233456998999999999789
No 45
>>2waq_E DNA-directed RNA polymerase RPO7 subunit; multi-subunit, transcription; 3.35A {Sulfolobus shibatae} PDB: 2wb1_E 2pmz_E 3hkz_E (E:81-180)
Probab=55.03 E-value=17 Score=17.78 Aligned_cols=53 Identities=15% Similarity=0.196 Sum_probs=36.4
Q ss_pred CCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCC---------------CCCCCCCCEEEEEEEECCCC
Q ss_conf 7762775146887465885488778837999950002358---------------84468998899999986999
Q gi|254780913|r 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG---------------LFNLTEGQLVTYDYVQNDAN 62 (78)
Q Consensus 3 ~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g---------------~~~l~~G~~V~F~i~~~~~~ 62 (78)
..|+|.--+ -||+.+.- ++-+-|+|.|.|...- ...++.||+|...+..-+..
T Consensus 5 ~~g~V~~v~---~~G~fV~l----~~~~Glv~~s~ls~~~~~~~~~~~~~~~~~~~~~~~vGd~v~vkV~~vd~~ 72 (100)
T 2waq_E 5 VEGEVLQVD---NYGIFVNL----GPMDGLVHISQITDDTLKYDNVRGIIFGEKSKKVIQKGDKVRARVISVAST 72 (100)
T ss_dssp CCEEEEEEC---SSEEEEBC----SSSBBCEESTTBCSSSSCCCCCSSSCSCBCSSSBCCTTCEEBCEEEEEECC
T ss_pred EEEEEEEEE---CCEEEEEE----CCCCCEEEEHHHCCCCCCCCHHHCEEEECCCCEEEECCCEEEEEEEEEECC
T ss_conf 999999985---47199971----487753975232787420345516377447882995899999999999678
No 46
>>2vnu_D Exosome complex exonuclease RRP44; rRNA processing, RNA degradation, cytoplasm, RNA-binding, RNA processing, DIS3P, nucleus, hydrolase; HET: 1PE; 2.30A {Saccharomyces cerevisiae} (D:160-262)
Probab=54.69 E-value=17 Score=17.75 Aligned_cols=61 Identities=3% Similarity=-0.103 Sum_probs=42.0
Q ss_pred EECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEEC-CCCCCCCCEEEEECCCCCC
Q ss_conf 14688746588548877883799995000235884468998899999986-9997111059996357889
Q gi|254780913|r 10 YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN-DANGKYSAENLKLVPKSSN 78 (78)
Q Consensus 10 fn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~-~~~gk~~A~~v~~i~~~~~ 78 (78)
+-...+++|+.|++ ..-+++++-.+.. ....|+.|..++..- .+.+.++|.-+++|..+.+
T Consensus 15 ~~~~~~~~~~~P~d--~r~p~i~i~~~~~------~~~~g~~V~v~I~~~~~~~~~~~g~i~~vlG~~~d 76 (103)
T 2vnu_D 15 QSSSTQNVFVILXD--KCLPKVRIRTRRA------AELLDKRIVISIDSWPTTHKYPLGHFVRDLGTIES 76 (103)
T ss_dssp TCCSCEEEEEEESS--TTSCCEEEEETTG------GGGTTEEEEEEEEECCTTCSSCEEEEEEEEEESSC
T ss_pred CCCCCCEEEEEECC--CCCCCEEECCCCC------CHHCCCEEEEEEEECCCCCCCCEEEEEEECCCCCC
T ss_conf 55666407996778--8778789532425------02069989999976678888961999996489997
No 47
>>1j6q_A Cytochrome C maturation protein E; all-beta protein, heme delivery,cytochrome C maturation, OB- (oligonucleotide binding)fold; NMR {Shewanella putrefaciens} (A:)
Probab=53.44 E-value=18 Score=17.63 Aligned_cols=65 Identities=18% Similarity=0.213 Sum_probs=45.5
Q ss_pred CCCCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEE
Q ss_conf 987762775146887465885488778837999950002358844689988999999869997111059996
Q gi|254780913|r 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKL 72 (78)
Q Consensus 1 mm~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~~~gk~~A~~v~~ 72 (78)
|...|.|.|-.....+=|+..|+ .+.+|=|+++.+... ..++|+.|.-+ ..-..+|...|..|-.
T Consensus 40 ~V~~gSi~~~~~~~~~~F~itD~---~~~~i~V~Y~G~~Pd---~F~eg~~VVv~-G~~~~~g~F~A~~iLa 104 (136)
T 1j6q_A 40 MVTVGSMVRDPNSLHVQFAVHDS---LGGEILVTYDDLLPD---LFREGQGIVAQ-GVLGEDGKLAATEVLA 104 (136)
T ss_dssp EECTTCCEECTTSSCEEEEEECT---TCCCEEEEECSCCTT---SCCSSSEEEEE-EEECSTTSEEEEEEEC
T ss_pred EEEEEEEEECCCCCEEEEEECCC---CCEEEEEEECCCCCH---HHCCCCCEEEE-EEECCCCEEEEEEEEE
T ss_conf 99760788527872699998667---620899997897962---10279828999-9978898699969997
No 48
>>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A (A:)
Probab=42.54 E-value=16 Score=17.89 Aligned_cols=20 Identities=25% Similarity=0.358 Sum_probs=17.4
Q ss_pred CCEEEEEECCCCEEEEEECC
Q ss_conf 76277514688746588548
Q gi|254780913|r 4 RGSIKWYNPDKGYGFITPEG 23 (78)
Q Consensus 4 ~G~VKwfn~~kGfGFI~~d~ 23 (78)
-|.|+.....||||||.-+.
T Consensus 35 ~G~v~~~~~~~~~afV~f~~ 54 (103)
T 2dgu_A 35 FGKLERVKKLKDYAFIHFDE 54 (103)
T ss_dssp HSCEEEEEECSSCEEEEESS
T ss_pred HCCCCCCCCCCCEEEEEECC
T ss_conf 45142011112125788689
No 49
>>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli} (A:)
Probab=42.12 E-value=27 Score=16.61 Aligned_cols=56 Identities=18% Similarity=0.248 Sum_probs=35.7
Q ss_pred CCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCC-----CCCCCCCCEEEEEEEECCCC-CC
Q ss_conf 7762775146887465885488778837999950002358-----84468998899999986999-71
Q gi|254780913|r 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-----LFNLTEGQLVTYDYVQNDAN-GK 64 (78)
Q Consensus 3 ~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g-----~~~l~~G~~V~F~i~~~~~~-gk 64 (78)
.+|+|.--. -||.+.. -.++-+-|+|.|.+.... ...++.||.|...+..-++. ++
T Consensus 34 v~G~V~~v~---~~G~fV~---l~~~~~g~i~~~els~~~~~~~~~~~~~~G~~v~v~V~~vd~~~~r 95 (115)
T 2khi_A 34 LTGRVTNLT---DYGCFVE---IEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRR 95 (115)
T ss_dssp EEEEEEEEE---TTEEEEE---CSTTCEEEEETTSSSCSSTTCSSTTTCCTTCEEEEEEEEEETTTTE
T ss_pred EEEEEEEEE---CCEEEEE---ECCCCCEEEEEEEECCCCCCCCCEEEEECCCEEEEEEEEEECCCCE
T ss_conf 999999996---8759999---8985722378763134442223204884386699999999899999
No 50
>>2ba1_A Archaeal exosome RNA binding protein CSL4; RNAse PH, RNA degradation, exoribonuclease, RNA binding, S1 domain, Zn-ribbon, phosphorolytic; 2.70A {Archaeoglobus fulgidus} (A:54-145)
Probab=41.90 E-value=25 Score=16.81 Aligned_cols=53 Identities=9% Similarity=-0.039 Sum_probs=32.9
Q ss_pred CCEEEEEECCCCEEEE-EECCC------CCCCCEEEEEEEECCCC----CCCCCCCCCEEEEEEEEC
Q ss_conf 7627751468874658-85488------77883799995000235----884468998899999986
Q gi|254780913|r 4 RGSIKWYNPDKGYGFI-TPEGS------TESGDDVFLHRSAVASA----GLFNLTEGQLVTYDYVQN 59 (78)
Q Consensus 4 ~G~VKwfn~~kGfGFI-~~d~~------~d~g~DvFvH~s~i~~~----g~~~l~~G~~V~F~i~~~ 59 (78)
.|+|.-- .-||+. ..+.. ...+.+-|+|.|.+... -.+.++.||.|...+...
T Consensus 9 ~G~V~~I---~~fG~fVel~~~~~~~~~~~~~~~gli~~s~~s~~~~~~~~~~~~~Gd~v~vkV~~~ 72 (92)
T 2ba1_A 9 LGRVVDL---RNSIALIEVSSKKGENRGPSNRGIGILHVSNVDEGYVKEISEAVGYLDILKARVIGD 72 (92)
T ss_dssp EEEEEEE---ETTEEEEEEEEETTCCSCCTTCEEEEEEHHHHCSSCCCSSTTTCCTTCEEEEEEEET
T ss_pred EEEEEEE---CCCCEEEEEEECCCCCCCCCCCCCCEEEECCCCHHHHHHHHHEECCCCEEEEEEECC
T ss_conf 9999896---168389999712586355554552306842331566653462043897899999278
No 51
>>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha subunit; transferase, protein biosynthesis, protein synthesis/transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A (A:1-88)
Probab=40.43 E-value=29 Score=16.46 Aligned_cols=55 Identities=7% Similarity=-0.112 Sum_probs=35.5
Q ss_pred CCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCC----CCCCCCCCEEEEEEEECCC
Q ss_conf 7762775146887465885488778837999950002358----8446899889999998699
Q gi|254780913|r 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQNDA 61 (78)
Q Consensus 3 ~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g----~~~l~~G~~V~F~i~~~~~ 61 (78)
.+|+|+--. -||.+..-. ..+|-+-|+|.|.|...- ...+..||.|...+..-++
T Consensus 19 ~~g~V~~i~---~~G~~V~l~-~~~gi~g~i~~s~ls~~~~~~~~~~~~vG~~v~v~V~~vd~ 77 (88)
T 2a19_A 19 VMVNVQQIA---EMGAYVKLL-EYDNIEGMILLSELSRRRIRSIQKLIRVGKNDVAVVLRVDK 77 (88)
T ss_dssp EEEEEEEEE---TTEEEEEET-TTTTCEEEEECC--------CCCCCCCTTSEEEEEEEEEET
T ss_pred EEEEEEEEE---CCEEEEEEC-CCCCEEEEEEHHHHCCCCCCCCCEEECCCCEEEEEEEEEEC
T ss_conf 999999997---987999976-77982699889992866445800043289899999957642
No 52
>>1sr3_A APO-CCME; OB fold, beta barrel, flexible C-terminal domain, chaperone; NMR {Escherichia coli} (A:)
Probab=39.77 E-value=30 Score=16.40 Aligned_cols=62 Identities=18% Similarity=0.156 Sum_probs=43.2
Q ss_pred CCCCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEE
Q ss_conf 9877627751468874658854887788379999500023588446899889999998699971110599
Q gi|254780913|r 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70 (78)
Q Consensus 1 mm~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~~~gk~~A~~v 70 (78)
|...|.|.|-.....+=|+..| ++.+|=|+.+.+... ..++|+.|.-+ ..-..+|...|.+|
T Consensus 36 ~V~~GSi~~~~~~~~~~F~ltD----~~~~i~V~Y~G~~Pd---~F~eg~~VVv~-G~~~~~g~F~A~~i 97 (136)
T 1sr3_A 36 MVMPGSVQRDPNSLKVTFTIYD----AEGSVDVSYEGILPD---LFREGQGVVVQ-GELEKGNHILAKEV 97 (136)
T ss_dssp EECTTTCEECSSSSEEEEEEEC----SSCEEEEEEESCCCT---TCCTTSEEEEE-EEECSSSEEEESSC
T ss_pred EEEEEEEEECCCCCEEEEEEEC----CCCEEEEEECCCCCH---HHCCCCCEEEE-EEECCCCEEEEEEE
T ss_conf 9987289851663158999805----651588886488964---44279809999-89789996999999
No 53
>>1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus WR} (A:)
Probab=38.02 E-value=20 Score=17.32 Aligned_cols=62 Identities=16% Similarity=0.134 Sum_probs=37.4
Q ss_pred CCEEEEEECCCCEEEEE-ECCCCCCCCEEEEEEEECCCCC----CCCCCCCCEEEEEEEECC-CCCCCCCEEEEE
Q ss_conf 76277514688746588-5488778837999950002358----844689988999999869-997111059996
Q gi|254780913|r 4 RGSIKWYNPDKGYGFIT-PEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND-ANGKYSAENLKL 72 (78)
Q Consensus 4 ~G~VKwfn~~kGfGFI~-~d~~~d~g~DvFvH~s~i~~~g----~~~l~~G~~V~F~i~~~~-~~gk~~A~~v~~ 72 (78)
+|+|+-.+ ||.+. .+. .+|-+-|+|+|.+.... .+.+..||.|...+..-+ .+++ -...++.
T Consensus 16 ~g~V~v~~----~G~fV~l~~--~~gv~Gli~~s~is~~~~~~~~~~~~vGd~v~~kVl~vd~~~~~-i~LS~K~ 83 (88)
T 1luz_A 16 KGRVYEKD----YALYIYLFD--YPHFEAILAESVKXHXDRYVEYRDKLVGKTVKVKVIRVDYTKGY-IDVNYKR 83 (88)
T ss_dssp EEEEEEET----TEEEEEETT--CTTSEEEEGGGSSCCHHHHHHHHHHHTTCEEEEEEEEEETTTTE-EEEEEEE
T ss_pred EEEEEEEC----CEEEEEECC--CCCCEEEEEEHHHHHHHHHHHHHHHHCCCEEEEEEEEECCEEEE-EEEHHHH
T ss_conf 24899968----899999368--89823887734355158999999975395699999998360147-9841553
No 54
>>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} (A:)
Probab=36.50 E-value=34 Score=16.10 Aligned_cols=45 Identities=22% Similarity=0.443 Sum_probs=29.3
Q ss_pred CCEEEEEE-CCCCEEEEEECCCCCCCCEEEEEEE----ECCCCCCC-CCCCCCEEE
Q ss_conf 76277514-6887465885488778837999950----00235884-468998899
Q gi|254780913|r 4 RGSIKWYN-PDKGYGFITPEGSTESGDDVFLHRS----AVASAGLF-NLTEGQLVT 53 (78)
Q Consensus 4 ~G~VKwfn-~~kGfGFI~~d~~~d~g~DvFvH~s----~i~~~g~~-~l~~G~~V~ 53 (78)
.|+|.+-- ..--||+-+ ++|-+|.+|+. .+...++. .+++||+|.
T Consensus 57 dG~I~~i~~T~HAi~i~~-----~~G~evLiHiGidTv~L~g~gF~~~v~~Gd~V~ 107 (162)
T 1ax3_A 57 RGKILNVFPTKHAIGLQS-----DGGREILIHFGIDTVSLKGEGFTSFVSEGDRVE 107 (162)
T ss_dssp CEEEEECCSSSSEEEEES-----SSSCEEEEECSSSTTTTTTTTEEESCCCCSEEC
T ss_pred CEEEEEECCCCCEEEEEC-----CCCCEEEEEEEECCCCCCCCEEEEEECCCCEEC
T ss_conf 809999927997999997-----999799999830420148961689986899994
No 55
>>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} (A:)
Probab=35.72 E-value=35 Score=16.03 Aligned_cols=45 Identities=29% Similarity=0.449 Sum_probs=28.1
Q ss_pred CCEEEEEECCC-CEEEEEECCCCCCCCEEEEEEE----ECCCCCCC-CCCCCCEEE
Q ss_conf 76277514688-7465885488778837999950----00235884-468998899
Q gi|254780913|r 4 RGSIKWYNPDK-GYGFITPEGSTESGDDVFLHRS----AVASAGLF-NLTEGQLVT 53 (78)
Q Consensus 4 ~G~VKwfn~~k-GfGFI~~d~~~d~g~DvFvH~s----~i~~~g~~-~l~~G~~V~ 53 (78)
.|+|.+--+.+ -||+-+ +.|-+|++|+- .|...++. .+++||.|.
T Consensus 52 dG~I~~i~~T~HAi~i~~-----~~G~eiLiHiGidTv~L~g~gF~~~v~~Gd~V~ 102 (154)
T 2gpr_A 52 SGKLVTAFPTKHAFGIQT-----KSGVEILLHIGLDTVSLDGNGFESFVTQDQEVN 102 (154)
T ss_dssp CEEEEECCTTCSEEEEEC-----TTSCEEEEECSSSGGGGTTCSEEECCCTTCEEC
T ss_pred CEEEEEECCCCCEEEEEC-----CCCCEEEEEECCCHHCCCCCCEEEEECCCCEEC
T ss_conf 869999878996999992-----999899999742430148951589974899991
No 56
>>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} (I:76-169)
Probab=35.33 E-value=35 Score=15.99 Aligned_cols=57 Identities=7% Similarity=-0.077 Sum_probs=33.4
Q ss_pred CCCEEEEEECCCCEEEEE-ECCC----CCCCCEEEEEEEECCCCC------CCCCCCCCEEEEEEEECCCC
Q ss_conf 776277514688746588-5488----778837999950002358------84468998899999986999
Q gi|254780913|r 3 HRGSIKWYNPDKGYGFIT-PEGS----TESGDDVFLHRSAVASAG------LFNLTEGQLVTYDYVQNDAN 62 (78)
Q Consensus 3 ~~G~VKwfn~~kGfGFI~-~d~~----~d~g~DvFvH~s~i~~~g------~~~l~~G~~V~F~i~~~~~~ 62 (78)
..|+|+-.. -||... .... ...+-+-|+|.|.+...- ...++.||.|...+..-+..
T Consensus 10 v~G~V~~v~---~~G~fV~i~~~~~~~l~~~i~Gli~~seis~~~v~~~~~~~~~~~Gd~V~~kV~~vd~~ 77 (94)
T 2nn6_I 10 VTCKVSSIN---SRFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKVEIYKSFRPGDIVLAKVISLGDA 77 (94)
T ss_dssp EEEEEEEEC---SSEEEEEEEESSSSCCCCSSCSCEEEEGGGTCSSCCCCGGGTCCSSSEEEEEEEEEETT
T ss_pred EEEEEEEEC---CCCEEEEEEEECCCCCCCCCCCCCCHHHCCCCCCCCCCHHHHCCCCCEEEEEEEEECCC
T ss_conf 999998991---79889999776480157662133327520103254306686367999999999986388
No 57
>>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli} (A:)
Probab=32.67 E-value=31 Score=16.29 Aligned_cols=53 Identities=17% Similarity=0.246 Sum_probs=34.0
Q ss_pred CCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCC----CCCCCCCEEEEEEEECCCC
Q ss_conf 7627751468874658854887788379999500023588----4468998899999986999
Q gi|254780913|r 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL----FNLTEGQLVTYDYVQNDAN 62 (78)
Q Consensus 4 ~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~----~~l~~G~~V~F~i~~~~~~ 62 (78)
+|+|.-.. -||..+.. .++-+-|+|.|.+...-. ..+..||.|...+..-++.
T Consensus 36 ~g~V~~v~---~~G~~V~~---~~~~~G~v~~s~l~~~~~~~~~~~~~vG~~v~v~V~~vd~~ 92 (109)
T 2khj_A 36 TGKVTAVD---AKGATVEL---ADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRK 92 (109)
T ss_dssp EEEEEEEC---SSCEEEEC---STTCBCCBCTTCCCSSSSSSGGGSCCTTCEEEEEEEEEETT
T ss_pred EEEEEEEE---CCEEEEEE---CCEEEEHEEHHHHCCCCCCCHHHHEECCCEEEEEEEEEECC
T ss_conf 99999998---96899998---98186011022424453149778203242799999999899
No 58
>>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} (A:592-757)
Probab=32.42 E-value=6.6 Score=20.05 Aligned_cols=60 Identities=27% Similarity=0.252 Sum_probs=36.7
Q ss_pred CCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCC--------CCCCCCCCEEEEEEEECCCCCCCCCE
Q ss_conf 7762775146887465885488778837999950002358--------84468998899999986999711105
Q gi|254780913|r 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG--------LFNLTEGQLVTYDYVQNDANGKYSAE 68 (78)
Q Consensus 3 ~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g--------~~~l~~G~~V~F~i~~~~~~gk~~A~ 68 (78)
.+|+|.- ..-||.+..- ..+.+-|+|+|.|.... -..+..||+|.-.+..-+.++|....
T Consensus 80 ~~g~V~~---i~~~G~fv~~---~~~~~g~i~is~i~~~~~~~~v~~~~~~~~vGd~V~VkV~~vd~~~ri~ls 147 (166)
T 1e3p_A 80 ILGSVVK---TTTFGAFVSL---LPGKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEIDSRGKLSLI 147 (166)
T ss_dssp --CBEEE---CC-CSCEECC---C---CCCCC-------------------CCSSCBCCCCCCCCCSSCC----
T ss_pred EEEEEEE---EEECEEEEEE---CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEE
T ss_conf 9999999---9825199996---699952788322366544442367310127998999999989899977875
No 59
>>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* (A:1-83)
Probab=31.82 E-value=40 Score=15.66 Aligned_cols=33 Identities=21% Similarity=0.194 Sum_probs=25.4
Q ss_pred CCCCCCEEEEEEEECCCCCCCCCEEEEECCCCCC
Q ss_conf 4689988999999869997111059996357889
Q gi|254780913|r 45 NLTEGQLVTYDYVQNDANGKYSAENLKLVPKSSN 78 (78)
Q Consensus 45 ~l~~G~~V~F~i~~~~~~gk~~A~~v~~i~~~~~ 78 (78)
..-+||+|...+... ++....|.-++++..|++
T Consensus 43 galPGe~V~~~i~~~-~~~~~~a~~~~vl~~S~~ 75 (83)
T 2jjq_A 43 FSAPGDEIIVERVER-VKKRRVASQWKLVRSSPL 75 (83)
T ss_dssp TCCTTCEEEEEEEEE-SSSSEEEEEEEEEECCTT
T ss_pred CCCCCCEEEEEEEEE-ECCEEEEEEEEEECCCCC
T ss_conf 999998999999998-488589999999358966
No 60
>>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} (A:1-84)
Probab=30.22 E-value=43 Score=15.50 Aligned_cols=58 Identities=14% Similarity=0.184 Sum_probs=40.2
Q ss_pred CCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEECCCCCC
Q ss_conf 762775146887465885488778837999950002358844689988999999869997111059996357889
Q gi|254780913|r 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKSSN 78 (78)
Q Consensus 4 ~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~~~gk~~A~~v~~i~~~~~ 78 (78)
+++|.-++ ..|.|....+ +.=|||- ..-+|++|+..+... ++....|.-++++.+|+.
T Consensus 18 ~v~I~~l~-~~G~Gi~~~~-----~~~vfV~----------~~lpGE~V~v~i~k~-k~~~~~a~~i~il~~S~~ 75 (84)
T 1uwv_A 18 TVSVNDLD-SFGQGVARHN-----GKTLFIP----------GLLPQENAEVTVTED-KKQYARAKVVRRLSDSPE 75 (84)
T ss_dssp EEEEEEEC-TTSEEEEEET-----TEEEEEE----------TCCTTCEEEEEEEEE-CSSEEEEEEEEECCCCTT
T ss_pred EEEEEECC-CCCEEEEEEC-----CEEEEEC----------CCCCCCEEEEEEEEE-ECCEEEEEEEEEECCCCC
T ss_conf 99999878-9953999989-----9999988----------889998999999996-388799999999247866
No 61
>>2kct_A Cytochrome C-type biogenesis protein CCME; solution structure, heme chaperone, cytochrome C biogenesis, OB-fold domain, NESG, PSI-2; NMR {Desulfovibrio vulgaris str} (A:)
Probab=30.17 E-value=43 Score=15.50 Aligned_cols=68 Identities=12% Similarity=0.163 Sum_probs=45.4
Q ss_pred CCCCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEE
Q ss_conf 987762775146887465885488778837999950002358844689988999999869997111059996
Q gi|254780913|r 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKL 72 (78)
Q Consensus 1 mm~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~~~gk~~A~~v~~ 72 (78)
|...|.|.|-......=|...|+. +.+..+-|+++.+... ..++|+.|.-+=...+..|..+|.+|-.
T Consensus 16 ~V~~gSi~~~~~~~~~~F~itD~~-~~~~~i~V~Y~G~~Pd---~F~eg~~VVv~G~~~~~~g~F~A~~iLa 83 (94)
T 2kct_A 16 TVAADGLTMLDGAPGVRFRLEDKD-NTSKTVWVLYKGAVPD---TFKPGVEVIIEGGLAPGEDTFKARTLMT 83 (94)
T ss_dssp EECSTTCEECTTSSEEEEEEECSS-CTTCEEEEEEESCCCT---TCCTTCEEEEEEEECTTCSEEEEEEEEE
T ss_pred EEECCCEEECCCCCEEEEEEEECC-CCCCEEEEEECCCCCH---HHCCCCEEEEEEEEECCCCEEEEEEEEE
T ss_conf 996992998899868999999088-7884999998997973---3428980999999967899899839996
No 62
>>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} (A:)
Probab=30.12 E-value=43 Score=15.50 Aligned_cols=45 Identities=24% Similarity=0.394 Sum_probs=29.8
Q ss_pred CCEEEEEEC-CCCEEEEEECCCCCCCCEEEEEEEE----CCCCCCC-CCCCCCEEE
Q ss_conf 762775146-8874658854887788379999500----0235884-468998899
Q gi|254780913|r 4 RGSIKWYNP-DKGYGFITPEGSTESGDDVFLHRSA----VASAGLF-NLTEGQLVT 53 (78)
Q Consensus 4 ~G~VKwfn~-~kGfGFI~~d~~~d~g~DvFvH~s~----i~~~g~~-~l~~G~~V~ 53 (78)
.|+|.+--+ .--||+-+ ++|-+|++|+-. +...|+. .+++||+|.
T Consensus 57 dG~I~~v~~T~HAigi~~-----~~G~eiLiHiGidTv~l~g~gF~~~v~~Gd~V~ 107 (161)
T 1f3z_A 57 DGTIGKIFETNHAFSIES-----DSGVELFVHFGIDTVELKGEGFKRIAEEGQRVK 107 (161)
T ss_dssp SEEEEEECTTSSEEEEEE-----TTSCEEEEECSBSGGGGTTTTEEECSCTTCEEC
T ss_pred CEEEEEECCCCCEEEEEE-----CCCCEEEEEECCCHHHCCCCCEEEEECCCCEEC
T ss_conf 979999867896999993-----998799999663654328964389973899998
No 63
>>2hsi_A Putative peptidase M23; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.90A {Pseudomonas aeruginosa PAO1} (A:116-267)
Probab=29.70 E-value=44 Score=15.45 Aligned_cols=52 Identities=12% Similarity=-0.020 Sum_probs=33.7
Q ss_pred CCCCEEEEEECCCCEEEEE-ECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEE
Q ss_conf 8776277514688746588-5488778837999950002358844689988999
Q gi|254780913|r 2 VHRGSIKWYNPDKGYGFIT-PEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 (78)
Q Consensus 2 m~~G~VKwfn~~kGfGFI~-~d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F 54 (78)
+..|+|.+....++||-.+ .++ .++-.=++.|.+.+.-.--..+..||.+-.
T Consensus 81 ~~~G~V~~~~~~~~~g~~v~i~h-~~g~~t~Y~~l~~v~V~~G~~V~~Gq~IG~ 133 (152)
T 2hsi_A 81 PAAGKVILIGDYFFNGKTVFVDH-GQGFISMFCHLSKIDVKLGQQVPRGGVLGK 133 (152)
T ss_dssp SSCEEEEEEEEETTTEEEEEEEE-ETTEEEEEEEESEECSCTTCEECTTCEEEE
T ss_pred CEEEEEEECCCCCCCCEEEEEEC-CCCCEEEECCCCCCCCCCCCEECCCCEEEE
T ss_conf 31100310134566743999976-997368861656135488999998998998
No 64
>>3gqh_A Preneck appendage protein; beta barrel, viral protein; 1.80A {Bacillus phage PHI29} PDB: 3gqk_A* (A:110-163)
Probab=28.10 E-value=19 Score=17.52 Aligned_cols=12 Identities=42% Similarity=0.805 Sum_probs=6.1
Q ss_pred EEEECCCCEEEE
Q ss_conf 751468874658
Q gi|254780913|r 8 KWYNPDKGYGFI 19 (78)
Q Consensus 8 Kwfn~~kGfGFI 19 (78)
.-|+.+||||--
T Consensus 38 tpY~~eKGyGvA 49 (54)
T 3gqh_A 38 TPYTKEKGYGVA 49 (54)
T ss_dssp ECCCTTTCCEEE
T ss_pred CCCCCCCCCEEE
T ss_conf 575323681168
No 65
>>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae} (A:206-361)
Probab=27.99 E-value=47 Score=15.28 Aligned_cols=52 Identities=13% Similarity=0.127 Sum_probs=33.3
Q ss_pred CCCCEEEEEECCCCEE-EEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEE
Q ss_conf 8776277514688746-5885488778837999950002358844689988999
Q gi|254780913|r 2 VHRGSIKWYNPDKGYG-FITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 (78)
Q Consensus 2 m~~G~VKwfn~~kGfG-FI~~d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F 54 (78)
...|+|.+-....++| +|..+. .++-.=++.|.+.+.-.--..+.+||.+-.
T Consensus 43 ~~~G~V~~~~~~~~~g~~V~i~h-~~g~~~~y~~l~~~~v~~G~~V~~G~~IG~ 95 (156)
T 2gu1_A 43 TGDGKVIVVRKHPYAGNYLVIEH-NSVYKTRYLHLDKILVKKGQLVKRGQKIAL 95 (156)
T ss_dssp SSSEEEEEEEEETTTEEEEEEEC-SSSEEEEEEEESEECCCTTCEECTTCEEEE
T ss_pred CCCCEEEEECCCCCCCCEEEEEC-CCCEEEEEECCCCCEECCCCEECCCCEEEE
T ss_conf 34623576124776564599974-997478883343212188999997998997
No 66
>>2nq5_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; structural genomics, target 6426D, PSI; 1.90A {Streptococcus mutans} (A:67-129)
Probab=27.62 E-value=27 Score=16.68 Aligned_cols=17 Identities=47% Similarity=0.944 Sum_probs=13.5
Q ss_pred EEEEEECCCCEEEEEECCC
Q ss_conf 2775146887465885488
Q gi|254780913|r 6 SIKWYNPDKGYGFITPEGS 24 (78)
Q Consensus 6 ~VKwfn~~kGfGFI~~d~~ 24 (78)
-.||||. .|=+|+|+-.
T Consensus 44 MtKWFdT--NYHYiVPE~~ 60 (63)
T 2nq5_A 44 MKKWFNT--NYHYIVPEWS 60 (63)
T ss_dssp EEECTTS--SCEEECCBCC
T ss_pred CEECCCC--CCCCCCCCCC
T ss_conf 1122368--8761164016
No 67
>>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A* (A:1024-1128)
Probab=26.69 E-value=47 Score=15.30 Aligned_cols=67 Identities=10% Similarity=-0.002 Sum_probs=40.1
Q ss_pred EEEEECCCC--EEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCC-CCCCCEEEEECCC
Q ss_conf 775146887--46588548877883799995000235884468998899999986999-7111059996357
Q gi|254780913|r 7 IKWYNPDKG--YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN-GKYSAENLKLVPK 75 (78)
Q Consensus 7 VKwfn~~kG--fGFI~~d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~~~-gk~~A~~v~~i~~ 75 (78)
++.--..+| |.|++.++ ..|.-|+.+--....... ..|.+|..|...-.-...+ -+..+..+..+.+
T Consensus 31 ~~~~~tk~G~~~a~~~leD-~tg~~e~~~F~~~~~~~~-~~l~~~~~v~i~g~v~~~~~~~l~v~~i~~l~~ 100 (105)
T 2hpi_A 31 VVRKPTRSGGMMARFTLSD-ETGALEVVVFGRAYEGVS-PKLKEDIPLLVLAEVEKGEELRVLAQAVWTLEE 100 (105)
T ss_dssp C------------CEEEEE-TTEEEEEC--------------CTTCEEEEEEEEC-----CEEEEEEEEHHH
T ss_pred EEECCCCCCCEEEEEEEEE-CCCCEEEEECHHHHHHHH-HHHCCCCEEEEEEEEEECCCEEEEEEECCCHHH
T ss_conf 9970178999799999998-998789998479999998-885149879999999978952899966365999
No 68
>>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A (A:)
Probab=25.36 E-value=31 Score=16.34 Aligned_cols=21 Identities=24% Similarity=0.306 Sum_probs=17.4
Q ss_pred CCCEEEEEECCCCEEEEEECC
Q ss_conf 776277514688746588548
Q gi|254780913|r 3 HRGSIKWYNPDKGYGFITPEG 23 (78)
Q Consensus 3 ~~G~VKwfn~~kGfGFI~~d~ 23 (78)
.-|.|+.....+||+||+-..
T Consensus 54 ~fG~i~~~~~~~g~afV~f~~ 74 (108)
T 2jvo_A 54 PFGPMKEVKILNGFAFVEFEE 74 (108)
T ss_dssp TTSCCCEEEEETTEEEEECSS
T ss_pred HHCCCCCCCCCCCEEEEEECC
T ss_conf 646221101101156899899
No 69
>>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B (C:1-85)
Probab=25.12 E-value=44 Score=15.47 Aligned_cols=55 Identities=24% Similarity=0.192 Sum_probs=34.3
Q ss_pred CCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCC----CCCCCCEEEEEEEECCCC
Q ss_conf 76277514688746588548877883799995000235884----468998899999986999
Q gi|254780913|r 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF----NLTEGQLVTYDYVQNDAN 62 (78)
Q Consensus 4 ~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~~----~l~~G~~V~F~i~~~~~~ 62 (78)
+|+|+- -.-||....-+ ...+-+-|+|.|.+...-.+ .+..||.|...+..-++.
T Consensus 16 ~g~V~~---i~~~G~~V~l~-~~~~i~G~i~~s~ls~~~~~~~~~~~~vG~~V~v~V~~vd~~ 74 (85)
T 3cw2_C 16 IATVKQ---VFDYGSYVSLD-EYGGLQAFLPWSEVSSKWVKNIRDVLKENRKVIVKVIRVDRR 74 (85)
T ss_dssp EEEEEE---CCSSSBEEEET-TTTSEECBBCGGGSSCSSCCCHHHHSCTTCEEEEEECCCCSS
T ss_pred EEEEEE---EECCEEEEEEC-CCCCCEEEEEHHHCCCCCCCCHHHHCCCCCEEEEEEEEEECC
T ss_conf 999999---97554899975-679908998989958865589888188999999999665255
No 70
>>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=24.79 E-value=46 Score=15.35 Aligned_cols=45 Identities=11% Similarity=0.051 Sum_probs=27.7
Q ss_pred CCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEE
Q ss_conf 776277514688746588548877883799995000235884468998899999
Q gi|254780913|r 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 (78)
Q Consensus 3 ~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i 56 (78)
.-|.|+-..-.|||+||+-+...+ -..|++..+. .+ .|..+.-+.
T Consensus 38 ~~G~I~~~~i~~~~~fV~F~~~~~-------A~~Ai~l~g~-~~-~g~~l~V~~ 82 (91)
T 2dnr_A 38 SFGEVILIRFVEDKMWVTFLEGSS-------ALNVLSLNGK-EL-LNRTITIAL 82 (91)
T ss_dssp TTCCEEEEEECSSSEEEEESSHHH-------HHHGGGGTTC-EE-TTEEEEEEE
T ss_pred HCCCEEEEEEECCEEEEEECCCHH-------HHHHHCCCCC-EE-CCEEEEEEE
T ss_conf 348289999948839999867787-------9997604681-96-260799997
No 71
>>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=24.56 E-value=55 Score=14.92 Aligned_cols=54 Identities=15% Similarity=0.231 Sum_probs=35.8
Q ss_pred CCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCC----CCCCCCCEEEEEEEECCC
Q ss_conf 77627751468874658854887788379999500023588----446899889999998699
Q gi|254780913|r 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL----FNLTEGQLVTYDYVQNDA 61 (78)
Q Consensus 3 ~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~----~~l~~G~~V~F~i~~~~~ 61 (78)
.+|+|+--. .||.++.-. +.+-+-|+|+|.|...-. ..+..||.|...+..-++
T Consensus 26 v~g~V~~I~---~~G~fV~l~--~~~~~Gli~~sels~~~~~~~~~~~~vG~~v~v~V~~vd~ 83 (119)
T 2cqo_A 26 FQGEVAMVT---DYGAFIKIP--GCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGREM 83 (119)
T ss_dssp EEEEEEEEE---TTEEEEECT--TCSSCEEEEHHHHCSSCCSCHHHHCCTTCEEEEEEEEEEE
T ss_pred EEEEEEEEE---CCEEEEEEC--CCCEEEEEEEHHCCCCCCCCHHHEECCCCEEEEEEEEEEC
T ss_conf 999999995---568899937--9743578610110455667987802799999999999977
No 72
>>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} (A:)
Probab=24.04 E-value=32 Score=16.26 Aligned_cols=21 Identities=24% Similarity=0.455 Sum_probs=17.0
Q ss_pred CCCEEEEEECCCCEEEEEECC
Q ss_conf 776277514688746588548
Q gi|254780913|r 3 HRGSIKWYNPDKGYGFITPEG 23 (78)
Q Consensus 3 ~~G~VKwfn~~kGfGFI~~d~ 23 (78)
.-|.|+-..-.||||||+-+.
T Consensus 51 ~~G~v~~~~~~kg~afV~f~~ 71 (110)
T 1wf1_A 51 KYGRVAGCSVHKGYAFVQYSN 71 (110)
T ss_dssp GGSCCSEEEEETTEEEEECSS
T ss_pred HCCCEEEEEECCCEEEEEECC
T ss_conf 519873658718978897599
No 73
>>3hfn_A ASL2047 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation, RNA binding protein; 2.31A {Nostoc SP} (A:)
Probab=21.96 E-value=30 Score=16.35 Aligned_cols=32 Identities=19% Similarity=0.428 Sum_probs=18.9
Q ss_pred CCCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECC
Q ss_conf 87762775146887465885488778837999950002
Q gi|254780913|r 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA 39 (78)
Q Consensus 2 m~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~ 39 (78)
+.+|+|+|||+ |--.-.+ .+|+-..+...||.
T Consensus 35 ~l~G~I~~~D~---~~i~L~~---~~g~~~LIyK~AIs 66 (72)
T 3hfn_A 35 AITGRVLWQDP---TCVCIAD---ENSRQTTIWKQAIA 66 (72)
T ss_dssp EEEEEEEEECS---SEEEEEC------CEEEEEGGGEE
T ss_pred EEEEEEEEECC---CEEEEEC---CCCCCEEEEEEEEE
T ss_conf 89999986589---7899856---88991888511234
No 74
>>1u1j_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; methionine, synthase, methyltetrahydrofolate; HET: C2F; 2.40A {Arabidopsis thaliana} (A:60-128)
Probab=21.59 E-value=30 Score=16.40 Aligned_cols=16 Identities=38% Similarity=0.976 Sum_probs=12.8
Q ss_pred EEEEEECCCCEEEEEECC
Q ss_conf 277514688746588548
Q gi|254780913|r 6 SIKWYNPDKGYGFITPEG 23 (78)
Q Consensus 6 ~VKwfn~~kGfGFI~~d~ 23 (78)
-.||||. .|=+|+|+-
T Consensus 50 MtKWFdT--NYHYiVPE~ 65 (69)
T 1u1j_A 50 XTKWFDT--NYHYIVPEL 65 (69)
T ss_dssp EEECTTS--SCEEECCEE
T ss_pred HCCCCCC--CCCCCCCEE
T ss_conf 0124567--766127557
Done!