HHsearch results for GI: 254780913 and protein with PDBid: 3i2z_B

>3i2z_B RNA chaperone, negative regulator of CSPA transcription; beta barrel, DNA binding protein/transcription, cytoplasm, gene regulation; 1.10A {Salmonella typhimurium} PDB: 1mjc_A 3mef_A

Probab=99.87  E-value=1.7e-22  Score=145.34  Aligned_cols=67  Identities=40%  Similarity=0.768  Sum_probs=60.6

Q ss_pred             CCCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEC
Q ss_conf             877627751468874658854887788379999500023588446899889999998699971110599963
Q gi|254780913|r    2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV   73 (78)
Q Consensus         2 m~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~~~gk~~A~~v~~i   73 (78)
                      +.+|+|||||++||||||+||   ++++|||+|+|+|...+++.|.+||+|+|++.+++++  ++|.+|++|
T Consensus         5 r~~G~Vk~fd~~kGyGFI~~d---~g~~diF~H~s~l~~~~~~~l~~G~~V~f~~~~~~kG--~~A~~V~~l   71 (71)
T 3i2z_B            5 KIKGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKG--PSAANVTAL   71 (71)
T ss_dssp             CEEEEEEEEETTTTEEEEEET---TCCCCEEEEGGGBCCSSCCCCCTTCEEEEEEEEETTE--EEEEEEEEC
T ss_pred             EEEEEEEEECCCCCEEEEEEC---CCCCEEEEEEHHHCCCCCCCCCCCCEEEEEEEECCCC--CEEEEEEEC
T ss_conf             115799999499984899868---9982299990882533798789999999999969999--786888959