Query         gi|254780913|ref|YP_003065326.1| cold shock protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 78
No_of_seqs    112 out of 2159
Neff          6.0 
Searched_HMMs 23785
Date          Tue May 31 22:12:26 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780913.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 3a0j_A Cold shock protein; OB-  99.9 4.8E-24   2E-28  153.9   8.0   72    2-77      1-72  (73)
  2 3cam_A Cold-shock domain famil  99.9 2.4E-23 9.9E-28  150.1   7.3   66    2-72      1-66  (67)
  3 3i2z_B RNA chaperone, negative  99.9 1.7E-22   7E-27  145.3   7.8   67    2-73      5-71  (71)
  4 1c9o_A CSPB, cold-shock protei  99.9 1.6E-22 6.8E-27  145.4   7.6   66    2-73      1-66  (66)
  5 1h95_A CSD, Y-box binding prot  99.9 2.9E-22 1.2E-26  144.0   6.3   65    3-72      9-77  (79)
  6 2k5n_A Putative cold-shock pro  99.9 1.4E-21 5.9E-26  140.2   8.6   68    1-76      1-68  (74)
  7 1g6p_A Cold shock protein TMCS  99.8 1.2E-21   5E-26  140.6   6.3   65    4-74      2-66  (66)
  8 2kcm_A Cold shock domain famil  99.8 3.2E-20 1.4E-24  132.6   6.1   65    4-74      2-67  (74)
  9 1wfq_A UNR protein; beta-barre  99.8 1.4E-18 5.9E-23  123.4   7.9   71    1-77     17-87  (89)
 10 2ytx_A Cold shock domain-conta  99.7 1.4E-18 6.1E-23  123.4   6.4   69    1-77     17-85  (97)
 11 2bh8_A 1B11; transcription, mo  99.7 7.1E-18   3E-22  119.5   6.5   64    2-68     16-81  (101)
 12 2yty_A Cold shock domain-conta  99.7 3.6E-18 1.5E-22  121.1   5.0   70    2-78     18-87  (88)
 13 1x65_A UNR protein; cell-free   99.7 2.2E-18 9.4E-23  122.3   1.4   69    2-77      8-77  (89)
 14 2ytv_A Cold shock domain-conta  99.7 1.8E-17 7.4E-22  117.3   4.6   71    2-78      8-78  (79)
 15 2id0_A Exoribonuclease 2; RNAs  96.9  0.0018 7.5E-08   39.1   6.1   61    3-76     22-82  (644)
 16 1a62_A RHO; transcription term  94.1   0.045 1.9E-06   31.3   4.1   65    4-73     52-119 (130)
 17 2k52_A Uncharacterized protein  93.2    0.16 6.8E-06   28.2   5.6   65    3-75      9-73  (80)
 18 3ice_A Transcription terminati  93.1   0.062 2.6E-06   30.5   3.4   58   13-73     62-122 (422)
 19 3l0o_A Transcription terminati  92.9   0.099 4.1E-06   29.4   4.2   50   13-65     66-117 (427)
 20 2eqs_A ATP-dependent RNA helic  89.0    0.29 1.2E-05   26.8   3.5   66    3-74     16-87  (103)
 21 2khi_A 30S ribosomal protein S  82.0     2.5  0.0001   21.6   5.4   56    3-64     34-95  (115)
 22 1kl9_A Eukaryotic translation   79.9     1.9 7.8E-05   22.3   4.1   57    3-64     19-80  (182)
 23 3go5_A Multidomain protein wit  79.8     3.4 0.00014   20.8   6.0   28   29-56     95-122 (285)
 24 1wi5_A RRP5 protein homolog; S  72.9     4.6  0.0002   20.1   4.6   59    1-64     23-86  (119)
 25 2k4k_A GSP13, general stress p  72.0     2.8 0.00012   21.3   3.3   56    3-64     11-71  (130)
 26 3bzc_A TEX; helix-turn-helix,   65.4     7.1  0.0003   19.0   4.2   55    1-61    656-714 (785)
 27 2a19_A EIF-2- alpha, eukaryoti  65.2       6 0.00025   19.4   3.8   55    3-62     19-78  (175)
 28 2cqo_A Nucleolar protein of 40  64.3     8.1 0.00034   18.7   5.7   50    4-59     27-81  (119)
 29 2khj_A 30S ribosomal protein S  63.8     6.2 0.00026   19.4   3.7   56    3-64     35-94  (109)
 30 3aev_A Translation initiation   59.8     8.7 0.00037   18.5   3.9   55    3-62     15-74  (275)
 31 2vnu_D Exosome complex exonucl  58.3      10 0.00044   18.1   5.2   45    4-57     34-80  (760)
 32 2vb2_X Copper protein, cation   51.2      14 0.00058   17.4   7.3   68    4-73     19-87  (88)
 33 1ax3_A Iiaglc, glucose permeas  48.9      15 0.00063   17.2   4.0   45    4-53     57-107 (162)
 34 1q8k_A Eukaryotic translation   47.6      14 0.00061   17.3   3.4   54    4-62     18-76  (308)
 35 2qcp_X Cation efflux system pr  47.4      16 0.00067   17.1   7.3   67    4-72     11-78  (80)
 36 3cdi_A Polynucleotide phosphor  46.5     3.4 0.00014   20.8   0.0   59    3-67    631-693 (723)
 37 3n7x_A Capsid protein; icosahe  42.7      16 0.00068   17.0   3.0   53    4-56    237-289 (329)
 38 3cw2_C Translation initiation   41.1      11 0.00045   18.0   1.9   55    3-62     15-74  (266)
 39 2kct_A Cytochrome C-type bioge  40.5      20 0.00086   16.5   7.5   68    1-72     16-83  (94)
 40 2dhx_A Poly (ADP-ribose) polym  38.2      13 0.00055   17.5   2.0   45    4-57     37-81  (104)
 41 1e3p_A Guanosine pentaphosphat  37.4     3.5 0.00015   20.8  -1.1   58    3-66    671-736 (757)
 42 2fur_A Hypothetical protein; s  36.9      22 0.00093   16.3   2.9   53    4-59     34-86  (209)
 43 2hq9_A MLL6688 protein; NP_107  36.8      21 0.00088   16.4   2.8   55   14-70     29-83  (149)
 44 2dnp_A RNA-binding protein 14;  28.6      26  0.0011   15.9   2.2   45    4-56     33-77  (90)
 45 1f3z_A EIIA-GLC, glucose-speci  28.6      33  0.0014   15.3   4.8   45    4-53     57-107 (161)
 46 2xnq_A Nuclear polyadenylated   27.9      30  0.0013   15.5   2.4   21    3-23     46-66  (97)
 47 1sr3_A APO-CCME; OB fold, beta  26.8      35  0.0015   15.2   4.7   62    1-70     36-97  (136)
 48 2bx2_L Ribonuclease E, RNAse E  26.7      35  0.0015   15.1   7.7   58    3-64     49-119 (517)
 49 1iqt_A AUF1, heterogeneous nuc  22.4      26  0.0011   15.9   1.2   13   11-23     38-50  (75)
 50 2dnq_A RNA-binding protein 4B;  22.1      37  0.0016   15.0   2.0   44    4-56     32-76  (90)
 51 2gpr_A Glucose-permease IIA co  21.5      45  0.0019   14.6   4.2   45    4-53     52-102 (154)
 52 2dgu_A Heterogeneous nuclear r  21.4      43  0.0018   14.6   2.2   19    5-23     36-54  (103)
 53 2dgt_A RNA-binding protein 30;  21.0      36  0.0015   15.1   1.7   21    3-23     33-53  (92)
 54 2dnl_A Cytoplasmic polyadenyla  20.4      28  0.0012   15.7   1.1   12   12-23     50-61  (114)
 55 2j8a_A Histone-lysine N-methyl  20.2      23 0.00098   16.1   0.6   12   12-23     46-57  (136)

No 1  
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=99.90  E-value=4.8e-24  Score=153.93  Aligned_cols=72  Identities=36%  Similarity=0.714  Sum_probs=63.3

Q ss_pred             CCCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEECCCCC
Q ss_conf             8776277514688746588548877883799995000235884468998899999986999711105999635788
Q gi|254780913|r    2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKSS   77 (78)
Q Consensus         2 m~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~~~gk~~A~~v~~i~~~~   77 (78)
                      |++|+|||||++||||||++|    +++|||||+|+|+..+++.|.+||+|+|++.+++.+..++|.+|++|.++.
T Consensus         1 M~~G~Vkwf~~~kGfGFI~~d----~g~dvFvH~s~i~~~g~~~l~~G~~V~f~~~~~~~~kg~~A~~V~~v~~a~   72 (73)
T 3a0j_A            1 MQKGRVKWFNAEKGYGFIERE----GDTDVFVHYTAINAKGFRTLNEGDIVTFDVEPGRNGKGPQAVNVTVVEPAR   72 (73)
T ss_dssp             CEEEEEEEEETTTTEEEEECT----TSCCEEEEGGGBCSSSCSSCCTTCEEEEEEECCSCCSSSEEEEEEEEECCC
T ss_pred             CCCEEEEEEECCCCEEEECCC----CCCEEEEEEHHHCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEEECCCCC
T ss_conf             998399989299984783158----997099984775523698789999999999989999887588888615789


No 2  
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, structural genomics, oxford protein production facility, OPPF; 2.60A {Neisseria meningitidis MC58}
Probab=99.88  E-value=2.4e-23  Score=150.09  Aligned_cols=66  Identities=41%  Similarity=0.782  Sum_probs=60.5

Q ss_pred             CCCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEE
Q ss_conf             87762775146887465885488778837999950002358844689988999999869997111059996
Q gi|254780913|r    2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKL   72 (78)
Q Consensus         2 m~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~~~gk~~A~~v~~   72 (78)
                      |.+|+|||||.+||||||+||   ++++|||||+|+|+..+++.|.+||+|+|++++++++  ++|.+|+.
T Consensus         1 M~~G~Vkwf~~~kGyGFI~~~---~~~~dvFvH~s~l~~~~~~~l~~G~~V~f~~~~~~~G--~~A~~V~~   66 (67)
T 3cam_A            1 MATGIVKWFNDAKGFGFITPD---EGGEDLFAHFSAINMEGFKTLKEGQRVSFDVTTGPKG--KQAANIQA   66 (67)
T ss_dssp             CEEEEEEEEETTTTEEEEEET---TSCCCEEEEGGGBCGGGGSSCCTTCEEEEEEEEETTE--EEEEEEEE
T ss_pred             CCCEEEEEEECCCCCEEEEEC---CCCEEEEEEEHHHCCCCCCCCCCCCEEEEEEEECCCC--CCCCEEEC
T ss_conf             998399999599994899977---9972899984561522698589999999999989999--46115992


No 3  
>3i2z_B RNA chaperone, negative regulator of CSPA transcription; beta barrel, DNA binding protein/transcription, cytoplasm, gene regulation; 1.10A {Salmonella typhimurium} PDB: 1mjc_A 3mef_A
Probab=99.87  E-value=1.7e-22  Score=145.34  Aligned_cols=67  Identities=40%  Similarity=0.768  Sum_probs=60.6

Q ss_pred             CCCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEC
Q ss_conf             877627751468874658854887788379999500023588446899889999998699971110599963
Q gi|254780913|r    2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV   73 (78)
Q Consensus         2 m~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~~~gk~~A~~v~~i   73 (78)
                      +.+|+|||||++||||||+||   ++++|||+|+|+|...+++.|.+||+|+|++.+++++  ++|.+|++|
T Consensus         5 r~~G~Vk~fd~~kGyGFI~~d---~g~~diF~H~s~l~~~~~~~l~~G~~V~f~~~~~~kG--~~A~~V~~l   71 (71)
T 3i2z_B            5 KIKGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKG--PSAANVTAL   71 (71)
T ss_dssp             CEEEEEEEEETTTTEEEEEET---TCCCCEEEEGGGBCCSSCCCCCTTCEEEEEEEEETTE--EEEEEEEEC
T ss_pred             EEEEEEEEECCCCCEEEEEEC---CCCCEEEEEEHHHCCCCCCCCCCCCEEEEEEEECCCC--CEEEEEEEC
T ss_conf             115799999499984899868---9982299990882533798789999999999969999--786888959


No 4  
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 2es2_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2i5m_X 2i5l_X
Probab=99.87  E-value=1.6e-22  Score=145.42  Aligned_cols=66  Identities=42%  Similarity=0.808  Sum_probs=59.8

Q ss_pred             CCCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEC
Q ss_conf             877627751468874658854887788379999500023588446899889999998699971110599963
Q gi|254780913|r    2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV   73 (78)
Q Consensus         2 m~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~~~gk~~A~~v~~i   73 (78)
                      |.+|+|||||++||||||+||    +|+|||+|+|+|...+++.|.+||+|+|++.+++++  ++|.+|+.|
T Consensus         1 M~~G~Vk~f~~~kGfGFI~~d----~g~diF~H~s~l~~~~~~~l~~G~~V~f~~~~~~~G--~~A~~V~~l   66 (66)
T 1c9o_A            1 MQRGKVKWFNNEKGYGFIEVE----GGSDVFVHFTAIQGEGFKTLEEGQEVSFEIVQGNRG--PQAANVVKL   66 (66)
T ss_dssp             CEEEEEEEEETTTTEEEEEET----TEEEEEEEGGGBCSSSCCCCCTTCEEEEEEEEETTE--EEEEEEEEC
T ss_pred             CCCEEEEEEECCCCEEEEECC----CCCEEEEEEEHHCCCCCCCCCCCCEEEEEEEECCCC--CEEEEEEEC
T ss_conf             998099999699984998369----993899997041515788679999999999989999--697878989


No 5  
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=99.86  E-value=2.9e-22  Score=144.00  Aligned_cols=65  Identities=32%  Similarity=0.695  Sum_probs=56.9

Q ss_pred             CCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCC----CCCCCCCCEEEEEEEECCCCCCCCCEEEEE
Q ss_conf             7762775146887465885488778837999950002358----844689988999999869997111059996
Q gi|254780913|r    3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQNDANGKYSAENLKL   72 (78)
Q Consensus         3 ~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g----~~~l~~G~~V~F~i~~~~~~gk~~A~~v~~   72 (78)
                      .+|+|||||++||||||+||   |+++|||||+|+|+..+    ++.|.+||+|+|++.+++++  ++|.||+.
T Consensus         9 ~~G~VKwfn~~KGfGFI~~d---dg~~DvFvH~s~i~~~~~~~~~~~L~~G~~V~f~~~~~~~g--~~A~~Vtg   77 (79)
T 1h95_A            9 VLGTVKWFNVRNGYGFINRN---DTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKG--AEAANVTG   77 (79)
T ss_dssp             EEEEEEEEETTTTEEEEEEG---GGTEEEEEEGGGBCSCCCSCCSCSCCSSCEEEEEEEECSSS--EEEESBCC
T ss_pred             EEEEEEEEECCCCCEEEEEC---CCCEEEEEEHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCC--CEEEEEEC
T ss_conf             24899999689991899858---99704999969930479743334179999999999989999--88699777


No 6  
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, structural genomics, protein structure initiative; NMR {Pectobacterium atrosepticum}
Probab=99.85  E-value=1.4e-21  Score=140.19  Aligned_cols=68  Identities=34%  Similarity=0.527  Sum_probs=60.8

Q ss_pred             CCCCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEECCCC
Q ss_conf             9877627751468874658854887788379999500023588446899889999998699971110599963578
Q gi|254780913|r    1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKS   76 (78)
Q Consensus         1 mm~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~~~gk~~A~~v~~i~~~   76 (78)
                      |+.+|+|||||++||||||++|    +|+|||||+|+|.  +.+.|.+|++|+|++.+++++  ++|.+|++||-.
T Consensus         1 M~~~G~Vk~~~~~kGfGFI~~~----~G~DvF~H~s~l~--g~~~l~~G~~V~F~~~~~~kG--~~A~~V~ii~~e   68 (74)
T 2k5n_A            1 MAMNGTITTWFKDKGFGFIKDE----NGDNRYFHVIKVA--NPDLIKKDAAVTFEPTTNNKG--LSAYAVKVVPLE   68 (74)
T ss_dssp             CCEEEEEEEEETTTTEEEEEES----SSCEEEEEGGGBS--SGGGCCTTCEEEEEEEECSSS--EEEEEEEECCSS
T ss_pred             CCCCEEEEEEECCCCEEEEEEC----CCCCEEEEEEEEC--CCCCCCCCCEEEEEEEECCCC--CEEEEEEEECCC
T ss_conf             9855599999899996898746----9983999987207--988559998999999989998--357899997972


No 7  
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=99.84  E-value=1.2e-21  Score=140.58  Aligned_cols=65  Identities=42%  Similarity=0.825  Sum_probs=58.9

Q ss_pred             CCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEECC
Q ss_conf             76277514688746588548877883799995000235884468998899999986999711105999635
Q gi|254780913|r    4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVP   74 (78)
Q Consensus         4 ~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~~~gk~~A~~v~~i~   74 (78)
                      +|+|||||++||||||+||    +|+|||+|+|+|+..+++.|.+||+|+|++.+++++  ++|.+|++|.
T Consensus         2 ~G~Vk~f~~~kGfGFI~~~----~g~dvFvH~s~l~~~g~~~l~~G~~V~f~~~~~~~G--~~A~~V~~id   66 (66)
T 1g6p_A            2 RGKVKWFDSKKGYGFITKD----EGGDVFVHWSAIEMEGFKTLKEGQVVEFEIQEGKKG--PQAAHVKVVE   66 (66)
T ss_dssp             CEEEEEEETTTTEEEEEET----TSCBCBBCSSSSCCSSCCCCCSSSEEEEEEECSSSC--CEEEEEEEEC
T ss_pred             EEEEEEEECCCCEEEEECC----CCCEEEEEHHHHCCCCCCCCCCCCEEEEEEEECCCC--CEEEEEEECC
T ss_conf             2899999399982898718----996399995881633699789999999999989899--7998999449


No 8  
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Shewanella oneidensis mr-1}
Probab=99.80  E-value=3.2e-20  Score=132.58  Aligned_cols=65  Identities=28%  Similarity=0.466  Sum_probs=56.6

Q ss_pred             CCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECC-CCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEECC
Q ss_conf             762775146887465885488778837999950002-35884468998899999986999711105999635
Q gi|254780913|r    4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA-SAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVP   74 (78)
Q Consensus         4 ~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~-~~g~~~l~~G~~V~F~i~~~~~~gk~~A~~v~~i~   74 (78)
                      +|+|||||+.||||||++|    +|+|||||+|+|. ..+++.|.+||+|+|++.+++++  ++|.+|++--
T Consensus         2 ~G~Vk~f~~~KGfGFI~~~----dg~DvFvH~s~l~~~~~~~~L~~G~~V~F~~~~~~kG--~~A~~V~lp~   67 (74)
T 2kcm_A            2 KGKVVSYLAAKKYGFIQGD----DGESYFLHFSELLDKKDEGKLVKGSMVHFDPTPTPKG--LAAKAISLPL   67 (74)
T ss_dssp             EEEEEEEETTTTEEEEEET----TSCEECCCGGGSSCSGGGTTCCTTSEEEEEEECTTTS--CEEEEEECCS
T ss_pred             EEEEEEEECCCCEEEEECC----CCCEEEEEEEHHCCCCCCCCCCCCCEEEEEEEECCCC--CEEEEEEEEE
T ss_conf             3799999799987388659----9988999940523546886369999999999989999--6748999720


No 9  
>1wfq_A UNR protein; beta-barrel, translational regulation, RNA chaperone, RNA/DNA binding, QB fold, greek-KEY topology, structural genomics; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=99.76  E-value=1.4e-18  Score=123.42  Aligned_cols=71  Identities=27%  Similarity=0.367  Sum_probs=61.9

Q ss_pred             CCCCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEECCCCC
Q ss_conf             98776277514688746588548877883799995000235884468998899999986999711105999635788
Q gi|254780913|r    1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKSS   77 (78)
Q Consensus         1 mm~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~~~gk~~A~~v~~i~~~~   77 (78)
                      +|.+|+|+||+  +|||||+++   ++++|||||+|+|+ .+++.|.+||+|+|++.++++++|++|++|..+..-+
T Consensus        17 ~r~~G~V~~~~--~gfGFI~~~---~g~~dvFfH~s~i~-~~~~~l~~G~~V~F~v~~~~r~gk~~Av~V~~i~~p~   87 (89)
T 1wfq_A           17 LRETGVIEKLL--TSYGFIQCS---ERQARLFFHCSQYN-GNLQDLKVGDDVEFEVSSDRRTGKPIAVKLVKISGPS   87 (89)
T ss_dssp             CEEEEEEEEEC--SSEEEEEET---TTTEEEEEETTTCS-SCTTTCCTTCCEEEEEEECSSSCCEEEEEEEESSCCC
T ss_pred             EEEEEEEEEEE--CCCCEEEEC---CCCCCEEEEEHHHC-CCCCCCCCCCEEEEEEEECCCCCEEEEEEEEECCCCC
T ss_conf             17889999984--820258807---99976999860423-7886268999999999979989906878888888899


No 10 
>2ytx_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=99.74  E-value=1.4e-18  Score=123.36  Aligned_cols=69  Identities=25%  Similarity=0.454  Sum_probs=59.3

Q ss_pred             CCCCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEECCCCC
Q ss_conf             98776277514688746588548877883799995000235884468998899999986999711105999635788
Q gi|254780913|r    1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKSS   77 (78)
Q Consensus         1 mm~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~~~gk~~A~~v~~i~~~~   77 (78)
                      |+.+|+|+||+  +|||||+++   ++++|||||+|+|.. +++.|.+|++|+|++.++  .++++|.+|++|+.++
T Consensus        17 ~r~~G~I~~~k--~GfGFI~~~---~g~~diFfH~s~~~~-~~~~l~~G~~V~F~~~~~--~~~~~A~~V~~l~~g~   85 (97)
T 2ytx_A           17 ARCQGVVCAMK--EAFGFIERG---DVVKEIFFHYSEFKG-DLETLQPGDDVEFTIKDR--NGKEVATDVRLLPQGT   85 (97)
T ss_dssp             CCEEEEECCCC--SSEEEEECS---SSCCCEEEETTTCCS-CTTSCCSCCEEEEEECCC--SSSCBEEEEEECCCSS
T ss_pred             CEEEEEEEEEE--CCEEEEEEC---CCCCCEEEEEHHHHC-CCCCCCCCCEEEEEEEEC--CCCCEEEEEEECCCCC
T ss_conf             37889998993--818189718---999519999478506-666488999999999938--9997888879989997


No 11 
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, activator, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=99.72  E-value=7.1e-18  Score=119.50  Aligned_cols=64  Identities=36%  Similarity=0.566  Sum_probs=54.1

Q ss_pred             CCCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCC--CCCCCCCCEEEEEEEECCCCCCCCCE
Q ss_conf             87762775146887465885488778837999950002358--84468998899999986999711105
Q gi|254780913|r    2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG--LFNLTEGQLVTYDYVQNDANGKYSAE   68 (78)
Q Consensus         2 m~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g--~~~l~~G~~V~F~i~~~~~~gk~~A~   68 (78)
                      +.+|+|||||+.||||||+||   ++++|||+|+|+|+..+  .+.|++|+.|+|++......|...+.
T Consensus        16 ~~~g~vk~f~~~kg~gFi~~~---~g~~d~f~h~SAIq~~G~~~~~l~~G~~V~g~V~~itdfGaFV~i   81 (101)
T 2bh8_A           16 KMTGIVKWFNADKGFGFITPD---DGSKDVFVHFSAGSSGAAVRGNPQQGDRVEGKIKSITDFGIFIGL   81 (101)
T ss_dssp             CEEEEEEEEEGGGTEEEEEES---SSSCEEEEECCCSCSSSCCCCCCCTTCEEEEEEEECCSEEEEECT
T ss_pred             CEEEEEEEEECCCCEEEEECC---CCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCEEEEE
T ss_conf             446879978589981887247---896248889876543333331642114999999985589738850


No 12 
>2yty_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=99.72  E-value=3.6e-18  Score=121.14  Aligned_cols=70  Identities=23%  Similarity=0.395  Sum_probs=59.5

Q ss_pred             CCCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEECCCCCC
Q ss_conf             87762775146887465885488778837999950002358844689988999999869997111059996357889
Q gi|254780913|r    2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKSSN   78 (78)
Q Consensus         2 m~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~~~gk~~A~~v~~i~~~~~   78 (78)
                      +.+|+|+||  .||||||+++   ++++|||||+|+|.. +++.|.+|++|+|++.+ +++|+++|.||+.+...++
T Consensus        18 R~~G~I~~~--kkGfGFI~~~---~~~~diF~H~s~~~~-~~~~l~~G~~V~F~v~~-~~~Gk~~A~~V~~~~~p~s   87 (88)
T 2yty_A           18 RLLGYVATL--KDNFGFIETA---NHDKEIFFHYSEFSG-DVDSLELGDMVEYSLSK-GKGNKVSAEKVNKTSGPSS   87 (88)
T ss_dssp             CEEEEEEEE--CSSEEEEECS---SSSCEEEEETTTCCS-CTTTCCTTCEEEECCCC-CSCSCCBCCSCEECCCCCC
T ss_pred             EEEEEEEEE--ECEEEEEEEC---CCCCCEEEEHHHHCC-CCCCCCCCCEEEEEEEE-CCCCCEEEEEEECCCCCCC
T ss_conf             778999999--5708389708---999319999699316-88856899999999998-9999988588761788989


No 13 
>1x65_A UNR protein; cell-free protein synthesis, beta-barrel, translational regulation, RNA chaperone, RNA/DNA binding, QB fold, greek- KEY topology; NMR {Homo sapiens}
Probab=99.69  E-value=2.2e-18  Score=122.30  Aligned_cols=69  Identities=23%  Similarity=0.315  Sum_probs=58.8

Q ss_pred             CCCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCC-CCCCCEEEEECCCCC
Q ss_conf             8776277514688746588548877883799995000235884468998899999986999-711105999635788
Q gi|254780913|r    2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN-GKYSAENLKLVPKSS   77 (78)
Q Consensus         2 m~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~~~-gk~~A~~v~~i~~~~   77 (78)
                      +.+|+|+||+  +|||||+++   ++++|||||+|+|.  +.+.|.+|++|+|++.+++++ +|++|+||++|+..+
T Consensus         8 r~~G~V~~~k--~GfGFI~~~---~~~~dvF~H~s~~~--~~~~l~~G~~VeF~v~~~~~g~~k~~A~~V~~l~~gs   77 (89)
T 1x65_A            8 REMGVIAAMR--DGFGFIKCV---DRDVRMFFHFSEIL--DGNQLHIADEVEFTVVPDMLSAQRNHAIRIKKLPKGT   77 (89)
T ss_dssp             CEEEEEEECC--TTBCEEEES---SSSSCCCCBTTGGG--GSCCCCTTCCEEECCBCCSSSCCCCBCCSCEECCBTT
T ss_pred             CEEEEEEEEE--CCEEEEEEC---CCCCCEEEEHHHCC--CCCCCCCCCEEEEEEEECCCCCCCCEEEEEEECCCCC
T ss_conf             5679999995--957378769---99966899934547--9998778999999999898989984788848989985


No 14 
>2ytv_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=99.68  E-value=1.8e-17  Score=117.31  Aligned_cols=71  Identities=27%  Similarity=0.433  Sum_probs=60.2

Q ss_pred             CCCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEECCCCCC
Q ss_conf             87762775146887465885488778837999950002358844689988999999869997111059996357889
Q gi|254780913|r    2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKSSN   78 (78)
Q Consensus         2 m~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~~~gk~~A~~v~~i~~~~~   78 (78)
                      |.+|+|+|+.  +|||||++.  .++++|||||+|+|..  .+.|.+|++|+|++.+++++||++|++|+.|+..++
T Consensus         8 ~~~G~v~s~k--~gfGFI~~~--~~~g~diF~H~s~i~~--~~~L~~G~~V~F~v~~~~rggk~~A~~V~~l~~p~s   78 (79)
T 2ytv_A            8 LRRATVECVK--DQFGFINYE--VGDSKKLFFHVKEVQD--GIELQAGDEVEFSVILNQRTGKCSACNVWRVSGPSS   78 (79)
T ss_dssp             BCCEEEEECC--SSEEEESCC--CSSSSSEEEETTTCCS--SCCCCTTCEEECBCEECSSSCCEECCSCEECSCCCC
T ss_pred             CEEEEEEEEC--CCEEEEEEC--CCCCCEEEEEHHHCCC--CCCCCCCCEEEEEEEECCCCCEEEEEEEEECCCCCC
T ss_conf             0789998945--971177706--8899669999788589--875799999999999899899158788787788999


No 15 
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli K12} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=96.91  E-value=0.0018  Score=39.12  Aligned_cols=61  Identities=21%  Similarity=0.350  Sum_probs=43.7

Q ss_pred             CCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEECCCC
Q ss_conf             77627751468874658854887788379999500023588446899889999998699971110599963578
Q gi|254780913|r    3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKS   76 (78)
Q Consensus         3 ~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~~~gk~~A~~v~~i~~~   76 (78)
                      .+|+|+-  ..|||||+.+|    +++|||+.-+.+.     ..-.|++|...+..  ++++..+.-+.++...
T Consensus        22 ~~G~~~~--~~kgfgFv~~d----~~~di~I~~~~l~-----~A~~GD~V~v~i~~--~~~r~~g~v~~il~r~   82 (644)
T 2id0_A           22 AEGVVKA--TEKGFGFLEVD----AQKSYFIPPPQMK-----KVMHGDRIIAVIHS--EKERESAEPEELVEPF   82 (644)
T ss_dssp             EEEEEEC--CSSSCEEEECS----SSCEEEECHHHHT-----TSCTTCEEEEEEEC--CSSSCEEEEEEEEECS
T ss_pred             EEEEEEE--ECCCEEEEEEC----CCCCEEECHHHHC-----CCCCCCEEEEEEEC--CCCCCEEEEEEEEEEC
T ss_conf             9999999--68950899867----9888899989981-----48899999999965--7999707999999978


No 16 
>1a62_A RHO; transcription termination, termination, RNA binding domain, transcription regulation, OB fold, F1-ATPase; 1.55A {Escherichia coli BL21} SCOP: a.140.3.1 b.40.4.5 PDB: 1a63_A 2a8v_A 1a8v_A
Probab=94.11  E-value=0.045  Score=31.29  Aligned_cols=65  Identities=18%  Similarity=0.374  Sum_probs=41.8

Q ss_pred             CCEEEEEECCCCEEEEEE--CCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCC-EEEEEC
Q ss_conf             762775146887465885--4887788379999500023588446899889999998699971110-599963
Q gi|254780913|r    4 RGSIKWYNPDKGYGFITP--EGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSA-ENLKLV   73 (78)
Q Consensus         4 ~G~VKwfn~~kGfGFI~~--d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~~~gk~~A-~~v~~i   73 (78)
                      .|++.-.  ..||||+..  .+...+..||||..|.|+..+   |++|+.|+=.+..-..+-|+-| ..|.-+
T Consensus        52 eG~Lei~--~dg~GflR~~~~~y~~~~~DiyVs~sqirrf~---Lr~Gd~v~G~~r~p~~~er~~al~~v~~v  119 (130)
T 1a62_A           52 DGVLEIL--QDGFGFLRSADSSYLAGPDDIYVSPSQIRRFN---LRTGDTISGKIRPPKEGERYFALLKVNEV  119 (130)
T ss_dssp             EEEEEEC--TTSCEEEECGGGTTCCCTTCEEECHHHHHHTT---CCTTCEEEEEEECCCTTCCSEEEEEEEEE
T ss_pred             EEEEEEC--CCCCCEEECCCCCCCCCCCCCCCCHHHHHHHC---CCCCCEEEEEEECCCCCCCCCCCEEEHHH
T ss_conf             7788861--78743453576577998344104999999848---97444567775289888775100451341


No 17 
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=93.18  E-value=0.16  Score=28.20  Aligned_cols=65  Identities=17%  Similarity=0.211  Sum_probs=45.4

Q ss_pred             CCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEECCC
Q ss_conf             7762775146887465885488778837999950002358844689988999999869997111059996357
Q gi|254780913|r    3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK   75 (78)
Q Consensus         3 ~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~~~gk~~A~~v~~i~~   75 (78)
                      .+|+|+-..+   ||....-   +++-+-|+|.|.+...-.+.++.||.|.+.+..-++.  ..-.+++++|-
T Consensus         9 v~G~V~~i~~---~G~fV~l---~~~i~Glv~~sels~~~~~~~~~Gd~v~vkV~~vd~~--~~rI~Ls~~~l   73 (80)
T 2k52_A            9 YKGVVTRIEK---YGAFINL---NEQVRGLLRPRDMISLRLENLNVGDEIIVQAIDVRPE--KREIDFKYIPL   73 (80)
T ss_dssp             EEEEEEEEET---TEEEEEE---ETTEEEEECGGGCSSCCGGGCCTTCEEEEEEEEEETT--TTEEEEEECSC
T ss_pred             EEEEEEEEEC---CEEEEEC---CCCEEEEEEHHHHCCCCCCCCCCCCCEEEEEEEEECC--CCEEEEEEEEE
T ss_conf             9999999967---5799992---9998999997993885121688999899999999898--89997997730


No 18 
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold, motor, ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=93.10  E-value=0.062  Score=30.53  Aligned_cols=58  Identities=19%  Similarity=0.376  Sum_probs=39.4

Q ss_pred             CCCEEEEEE--CCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCC-EEEEEC
Q ss_conf             887465885--4887788379999500023588446899889999998699971110-599963
Q gi|254780913|r   13 DKGYGFITP--EGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSA-ENLKLV   73 (78)
Q Consensus        13 ~kGfGFI~~--d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~~~gk~~A-~~v~~i   73 (78)
                      ..||||+..  .+...+..||||..+-|+..+   |+.|+.|.-.+..-..+.++-| ..|..+
T Consensus        62 ~dg~Gflr~~~~~y~~~~~DiyVs~~~ir~~~---Lr~Gd~v~G~~r~~~~~e~~~~l~~V~~v  122 (422)
T 3ice_A           62 QDGFGFLRSADSSYLAGPDDIYVSPSQIRRFN---LRTGDTISGKIRPPKEGERYFALLKVNEV  122 (422)
T ss_dssp             TTSCEEEECGGGTTCCCTTCEEBCHHHHHHHT---CCTTCEEEEEEECCCSSCCSEEEEEEEEE
T ss_pred             CCCCEEEECCCCCCCCCCCCEEECHHHHHHHC---CCCCCEEEEEEECCCCCCCCCCCEEEHHC
T ss_conf             89967852775588999988538989998808---88899899987478777777631342320


No 19 
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=92.95  E-value=0.099  Score=29.40  Aligned_cols=50  Identities=24%  Similarity=0.492  Sum_probs=35.7

Q ss_pred             CCCEEEEEE-C-CCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCC
Q ss_conf             887465885-4-8877883799995000235884468998899999986999711
Q gi|254780913|r   13 DKGYGFITP-E-GSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY   65 (78)
Q Consensus        13 ~kGfGFI~~-d-~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~~~gk~   65 (78)
                      ..||||+.. + +...+..||||..|.|+..+   |+.|+.|+..+..-..+-|+
T Consensus        66 ~dg~GflR~~~~~y~~~~~Diyvs~~qir~f~---Lr~Gd~v~g~~r~p~~~e~~  117 (427)
T 3l0o_A           66 PEGFGFLRRIEDNLLPSNDDIYISPSQIRKFN---LNTGDIISGVIRKPKEGEKY  117 (427)
T ss_dssp             TTSCEEEECGGGTTCCCSSCEEECHHHHHHTT---CCTTCEEEEEEECCCSSSCS
T ss_pred             CCCCEEEECCCCCCCCCCCCEEECHHHHHHHC---CCCCCEEEEEEECCCCCCCC
T ss_conf             89867986686688899878034889984717---88899899988557778775


No 20 
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.03  E-value=0.29  Score=26.77  Aligned_cols=66  Identities=20%  Similarity=0.217  Sum_probs=41.0

Q ss_pred             CCCEEEEEECCCCEEEEE-ECCCCCCCCEEEEEEEECCCCC-----CCCCCCCCEEEEEEEECCCCCCCCCEEEEECC
Q ss_conf             776277514688746588-5488778837999950002358-----84468998899999986999711105999635
Q gi|254780913|r    3 HRGSIKWYNPDKGYGFIT-PEGSTESGDDVFLHRSAVASAG-----LFNLTEGQLVTYDYVQNDANGKYSAENLKLVP   74 (78)
Q Consensus         3 ~~G~VKwfn~~kGfGFI~-~d~~~d~g~DvFvH~s~i~~~g-----~~~l~~G~~V~F~i~~~~~~gk~~A~~v~~i~   74 (78)
                      .+|+|+-..   -||..+ .++ ...+-|-|+|+|.|....     -..++.||.|.+.+..-++ .| ....++.+.
T Consensus        16 ~~g~V~~V~---~fG~FV~l~~-~~~~~~GlvhiSels~~~~~~~~~~~~~~Gd~v~~kVl~id~-~k-i~LSlK~~~   87 (103)
T 2eqs_A           16 YNGKVTSIM---QFGCFVQLEG-LRKRWEGLVHISELRREGRVANVADVVSKGQRVKVKVLSFTG-TK-TSLSMKDVD   87 (103)
T ss_dssp             EEEEEEEEC---SSCEEEEECS-SSSCCEEEECGGGTSSSSCCCCHHHHCCTTCEEEEEEEEEET-TE-EEEESTTBC
T ss_pred             EEEEEEEEE---CCEEEEEECC-CCCCCCCCCCHHHHCCCCCCCCHHHEECCCCEEEEEEEEEEC-CE-EEEEEEECC
T ss_conf             999999994---6578999468-656731311365732444446874631699999999999858-85-188637768


No 21 
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=82.02  E-value=2.5  Score=21.58  Aligned_cols=56  Identities=18%  Similarity=0.232  Sum_probs=36.8

Q ss_pred             CCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCC-----CCCCCCCCCEEEEEEEECC-CCCC
Q ss_conf             776277514688746588548877883799995000235-----8844689988999999869-9971
Q gi|254780913|r    3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA-----GLFNLTEGQLVTYDYVQND-ANGK   64 (78)
Q Consensus         3 ~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~-----g~~~l~~G~~V~F~i~~~~-~~gk   64 (78)
                      .+|+|+-..   -||.+..   ..++-+-|+|.|.+...     ..+.+..||.|++.+.+-+ ..++
T Consensus        34 v~G~V~~I~---d~G~fV~---l~~~i~Gli~~sels~~~~~~~~~~~~~vG~~v~vkVi~vD~~~~k   95 (115)
T 2khi_A           34 LTGRVTNLT---DYGCFVE---IEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRR   95 (115)
T ss_dssp             EEEEEEEEE---TTEEEEE---CSTTCEEEEETTSSSCSSTTCSSTTTCCTTCEEEEEEEEEETTTTE
T ss_pred             EEEEEEEEE---CCEEEEE---ECCCCEEEEEEEEECCCCEECCHHHEECCCCEEEEEEEEEECCCCE
T ss_conf             999999996---8669999---7999789999863035320136312206998999999999899999


No 22 
>1kl9_A Eukaryotic translation initiation factor 2 subunit 1; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=79.95  E-value=1.9  Score=22.29  Aligned_cols=57  Identities=7%  Similarity=-0.020  Sum_probs=37.9

Q ss_pred             CCCEEEEEECCCCEE-EEEECCCCCCCCEEEEEEEECCCCC----CCCCCCCCEEEEEEEECCCCCC
Q ss_conf             776277514688746-5885488778837999950002358----8446899889999998699971
Q gi|254780913|r    3 HRGSIKWYNPDKGYG-FITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQNDANGK   64 (78)
Q Consensus         3 ~~G~VKwfn~~kGfG-FI~~d~~~d~g~DvFvH~s~i~~~g----~~~l~~G~~V~F~i~~~~~~gk   64 (78)
                      ..|+|+-..   -|| |+..+.  -+|-+-|+|+|.|...-    ...++.||.|.+.+..-++..+
T Consensus        19 v~g~V~~i~---~~G~fV~l~e--y~gi~Glih~seis~~~i~~~~~~~kvG~~v~~kVl~vd~~~~   80 (182)
T 1kl9_A           19 VMVNVRSIA---EMGAYVSLLE--YNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDKEKG   80 (182)
T ss_dssp             EEEEEEEEC---SSEEEEEETT--TTTEEEEEEGGGC------------CTTCEEEEEEEEEETTTT
T ss_pred             EEEEEEEEE---CCEEEEEECC--CCCCEEEEEHHHHCCCCCCCHHHCCCCCCEEEEEEEEEECCCC
T ss_conf             999999996---6679999657--7993799878994777556830137899999999987607788


No 23 
>3go5_A Multidomain protein with S1 RNA-binding domains; joint center for structural genomics, protein structure initiative, PSI-2; HET: MSE; 1.40A {Streptococcus pneumoniae TIGR4}
Probab=79.79  E-value=3.4  Score=20.84  Aligned_cols=28  Identities=4%  Similarity=0.061  Sum_probs=9.6

Q ss_pred             CEEEEEEEECCCCCCCCCCCCCEEEEEE
Q ss_conf             3799995000235884468998899999
Q gi|254780913|r   29 DDVFLHRSAVASAGLFNLTEGQLVTYDY   56 (78)
Q Consensus        29 ~DvFvH~s~i~~~g~~~l~~G~~V~F~i   56 (78)
                      .|+|+|.+.+.......+.+|+++...+
T Consensus        95 kdl~vp~~~~~~~~~~~~~~G~~v~V~l  122 (285)
T 3go5_A           95 KEIVVSLDILPELKELWPKKGDQLYIRL  122 (285)
T ss_dssp             CCEEEEGGGSCSSGGGSCCTTCEEEEEE
T ss_pred             CCCCCCHHHCCCCCCCCCCCCEEEEEEE
T ss_conf             4533330326733203788984999999


No 24 
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=72.94  E-value=4.6  Score=20.06  Aligned_cols=59  Identities=20%  Similarity=0.260  Sum_probs=39.6

Q ss_pred             CCCCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCC-----CCCCCCCCCEEEEEEEECCCCCC
Q ss_conf             98776277514688746588548877883799995000235-----88446899889999998699971
Q gi|254780913|r    1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA-----GLFNLTEGQLVTYDYVQNDANGK   64 (78)
Q Consensus         1 mm~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~-----g~~~l~~G~~V~F~i~~~~~~gk   64 (78)
                      |..+|+|+--.   -||++..-+  ..+-+-|+|.+.+...     ....+..||.|.+.+..-+...+
T Consensus        23 ~iv~G~V~~i~---~~G~~V~~g--~~~~~G~l~~~e~~~~~~~~~~~~~~~vGq~v~~~V~~vd~~~~   86 (119)
T 1wi5_A           23 MLLTGTVSSLE---DHGYLVDIG--VDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVKGNGG   86 (119)
T ss_dssp             CEEEEEEEEEC---SSEEEEECC--CSSCEEEEEHHHHHHHHHHHSSSCCCCTTCEEEEEEEECCTTSC
T ss_pred             CEEEEEEEEEC---CCEEEEEEC--CCCCCCEECHHHHHCCCCCCCCCCCCCCCCEEEEEEEEEECCCC
T ss_conf             89999999833---987999806--75432301255641234445743232589999999999989999


No 25 
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=72.04  E-value=2.8  Score=21.27  Aligned_cols=56  Identities=21%  Similarity=0.283  Sum_probs=36.6

Q ss_pred             CCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCC----CCCCCCCEEEEEEEECCC-CCC
Q ss_conf             77627751468874658854887788379999500023588----446899889999998699-971
Q gi|254780913|r    3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL----FNLTEGQLVTYDYVQNDA-NGK   64 (78)
Q Consensus         3 ~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~----~~l~~G~~V~F~i~~~~~-~gk   64 (78)
                      .+|+|.-..+   ||.++.-   .++-+-|+|+|.|...-.    ..+..||.|.+.+..-+. .++
T Consensus        11 v~g~V~~v~~---~G~fV~l---~~g~~Glv~~sels~~~~~~~~~~~~~G~~v~v~V~~id~~~~~   71 (130)
T 2k4k_A           11 YTGKVTGLQA---YGAFVAL---DEETQGLVHISEVTHGFVKDINEHLSVGDEVQVKVLAVDEEKGK   71 (130)
T ss_dssp             EEEEEEEEET---TEEEEEE---ETTEEEEEEGGGTSSSCCSCGGGTCCTTCEEEEEEEEEETTTTE
T ss_pred             EEEEEEEEEC---CEEEEEE---CCCCEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEECCCCE
T ss_conf             9999999978---8799998---99978998810202212224453568999999999999689998


No 26 
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=65.40  E-value=7.1  Score=19.03  Aligned_cols=55  Identities=20%  Similarity=0.266  Sum_probs=37.9

Q ss_pred             CCCCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCC----CCCCCCCEEEEEEEECCC
Q ss_conf             9877627751468874658854887788379999500023588----446899889999998699
Q gi|254780913|r    1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL----FNLTEGQLVTYDYVQNDA   61 (78)
Q Consensus         1 mm~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~----~~l~~G~~V~F~i~~~~~   61 (78)
                      |..+|+|.---   -||-.+.   ..-+.|-++|+|.+...-.    ..+..||.|...|..-+.
T Consensus       656 ~~~~g~V~nv~---~fGafVd---ig~~~dGlihis~lsd~~v~~p~~~v~~G~~v~v~V~~iD~  714 (785)
T 3bzc_A          656 MVLEGVVTNVT---NFGAFVD---IGVHQDGLVHISALSEKFVKDPYEVVKAGDIVKVKVMEVDI  714 (785)
T ss_dssp             CBCCCEEEEEE---TTEEEEE---CSSSSEEEEETTTSCSSCCSCHHHHCCTTCCCCCBEEEEET
T ss_pred             CEEEEEEEEEC---CCCEEEE---ECCCCCEEEEHHHCCCCCCCCHHHCCCCCCEEEEEEEEEEC
T ss_conf             88999999864---6856998---05896115669854787899988848999989999999986


No 27 
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha subunit; transferase, protein biosynthesis, protein synthesis/transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=65.25  E-value=6  Score=19.44  Aligned_cols=55  Identities=7%  Similarity=-0.092  Sum_probs=36.5

Q ss_pred             CCCEEEEEECCCCEEEE-EECCCCCCCCEEEEEEEECCCCC----CCCCCCCCEEEEEEEECCCC
Q ss_conf             77627751468874658-85488778837999950002358----84468998899999986999
Q gi|254780913|r    3 HRGSIKWYNPDKGYGFI-TPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQNDAN   62 (78)
Q Consensus         3 ~~G~VKwfn~~kGfGFI-~~d~~~d~g~DvFvH~s~i~~~g----~~~l~~G~~V~F~i~~~~~~   62 (78)
                      .+|+|+--.+   ||.. ..+.  -+|-+-|+|.|.|...-    ...+..||.|.+.+..-+..
T Consensus        19 v~g~V~~i~~---~G~fV~l~~--~~gieg~v~~sels~~~v~~~~~~~~~G~~v~~kVi~vd~~   78 (175)
T 2a19_A           19 VMVNVQQIAE---MGAYVKLLE--YDNIEGMILLSELSRRRIRSIQKLIRVGKNDVAVVLRVDKE   78 (175)
T ss_dssp             EEEEEEEEET---TEEEEEETT--TTTCEEEEECC--------CCCCCCCTTSEEEEEEEEEETT
T ss_pred             EEEEEEEEEC---CEEEEEECC--CCCEEEEEEHHHHCCCCCCCHHHEEECCCEEEEEEEEECCC
T ss_conf             9999999988---879999778--79849999868947565557424452798899999675166


No 28 
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=64.28  E-value=8.1  Score=18.71  Aligned_cols=50  Identities=18%  Similarity=0.292  Sum_probs=33.6

Q ss_pred             CCEEEEEECCCCEEEEE-ECCCCCCCCEEEEEEEECCCCCC----CCCCCCCEEEEEEEEC
Q ss_conf             76277514688746588-54887788379999500023588----4468998899999986
Q gi|254780913|r    4 RGSIKWYNPDKGYGFIT-PEGSTESGDDVFLHRSAVASAGL----FNLTEGQLVTYDYVQN   59 (78)
Q Consensus         4 ~G~VKwfn~~kGfGFI~-~d~~~d~g~DvFvH~s~i~~~g~----~~l~~G~~V~F~i~~~   59 (78)
                      +|+|+---+   ||... .++   .+.|-|+|+|.|...-.    ..+..||.|...+..-
T Consensus        27 ~G~V~~V~~---~G~FV~l~g---~~~dGlvhisels~~~v~~~~~~~~vGd~V~vkVi~i   81 (119)
T 2cqo_A           27 QGEVAMVTD---YGAFIKIPG---CRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGR   81 (119)
T ss_dssp             EEEEEEEET---TEEEEECTT---CSSCEEEEHHHHCSSCCSCHHHHCCTTCEEEEEEEEE
T ss_pred             EEEEEEEEC---CEEEEEECC---CCCEEEEEHHHHCCCCCCCHHHEECCCCEEEEEEEEE
T ss_conf             999999965---288999789---8720898666804666679888038999999999999


No 29 
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=63.79  E-value=6.2  Score=19.37  Aligned_cols=56  Identities=16%  Similarity=0.285  Sum_probs=36.2

Q ss_pred             CCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCC----CCCCCCCEEEEEEEECCCCCC
Q ss_conf             77627751468874658854887788379999500023588----446899889999998699971
Q gi|254780913|r    3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL----FNLTEGQLVTYDYVQNDANGK   64 (78)
Q Consensus         3 ~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~----~~l~~G~~V~F~i~~~~~~gk   64 (78)
                      .+|+|.-.++. | -||...    ++-+-|+|++.+.....    ..+..||.|.+.+..-+...+
T Consensus        35 v~G~V~~I~~~-G-v~V~l~----~~i~G~i~~~els~~~~~~~~~~~~vG~~v~vkVi~id~~~~   94 (109)
T 2khj_A           35 VTGKVTAVDAK-G-ATVELA----DGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNR   94 (109)
T ss_dssp             EEEEEEEECSS-C-EEEECS----TTCBCCBCTTCCCSSSSSSGGGSCCTTCEEEEEEEEEETTTT
T ss_pred             EEEEEEEEECC-E-EEEEEC----CCCEEEEEHHHCCCCCCCCCCCEECCCCEEEEEEEEEECCCC
T ss_conf             99999999897-7-999979----997899868992755312602076899999999999989999


No 30 
>3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A
Probab=59.82  E-value=8.7  Score=18.54  Aligned_cols=55  Identities=29%  Similarity=0.369  Sum_probs=37.0

Q ss_pred             CCCEEEEEECCCCEEEEE-ECCCCCCCCEEEEEEEECCCCCC----CCCCCCCEEEEEEEECCCC
Q ss_conf             776277514688746588-54887788379999500023588----4468998899999986999
Q gi|254780913|r    3 HRGSIKWYNPDKGYGFIT-PEGSTESGDDVFLHRSAVASAGL----FNLTEGQLVTYDYVQNDAN   62 (78)
Q Consensus         3 ~~G~VKwfn~~kGfGFI~-~d~~~d~g~DvFvH~s~i~~~g~----~~l~~G~~V~F~i~~~~~~   62 (78)
                      ..|+|+--.+   ||..+ .+.  -+|-+-|+|+|.|...-.    ..+..||.|.+.+..-++.
T Consensus        15 V~g~V~~I~~---~GafV~l~e--~~gieGli~~Seis~~~v~~~~~~~k~Gq~v~~kVl~vd~~   74 (275)
T 3aev_A           15 VVATVKRIHN---YGAFLELDE--YPGKEAFMHISEVASTWVRNIRDYLKEGQKVVAKVIRVDPR   74 (275)
T ss_dssp             EEEEEEEEET---TEEEEEETT--STTCEEEEEGGGSCSSCCSCGGGTCCTTCEEEEEEEEEETT
T ss_pred             EEEEEEEEEC---CEEEEEECC--CCCCEEEEEHHHCCCCCCCCHHHHCCCCCEEEEEEEECCCC
T ss_conf             9999999972---418999736--79947998989878742049888378999899999742577


No 31 
>2vnu_D Exosome complex exonuclease RRP44; rRNA processing, RNA degradation, cytoplasm, RNA-binding, RNA processing, DIS3P, nucleus, hydrolase; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16
Probab=58.29  E-value=10  Score=18.10  Aligned_cols=45  Identities=13%  Similarity=0.273  Sum_probs=27.6

Q ss_pred             CCEEEEEECCCCE--EEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEE
Q ss_conf             7627751468874--65885488778837999950002358844689988999999
Q gi|254780913|r    4 RGSIKWYNPDKGY--GFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV   57 (78)
Q Consensus         4 ~G~VKwfn~~kGf--GFI~~d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~   57 (78)
                      +|++.-  ..|+|  |||..+   +...|||+.-..-.+   +.+ .|+.|..++.
T Consensus        34 ~G~l~v--~~~~~~~a~V~~~---~~~~di~I~g~~~~N---rA~-~GD~V~Vell   80 (760)
T 2vnu_D           34 QGNIQI--SEYNFLEGSVSLP---RFSKPVLIVGQKNLN---RAF-NGDQVIVELL   80 (760)
T ss_dssp             EEEEEE--CSSBTTEEEECCS---SSSSCEEEESHHHHT---TCC-TTCEEEEEEC
T ss_pred             EEEEEE--ECCCCCEEEEECC---CCCCCEEEECHHCCC---CCC-CCCEEEEEEC
T ss_conf             999999--3699940799768---998788984701158---885-8999999985


No 32 
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, periplasm, metal-binding, metal transport, copper tolerance, copper transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=51.24  E-value=14  Score=17.43  Aligned_cols=68  Identities=12%  Similarity=0.179  Sum_probs=38.1

Q ss_pred             CCEEEEEECCCCEEEEEECCCC-CCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEC
Q ss_conf             7627751468874658854887-788379999500023588446899889999998699971110599963
Q gi|254780913|r    4 RGSIKWYNPDKGYGFITPEGST-ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV   73 (78)
Q Consensus         4 ~G~VKwfn~~kGfGFI~~d~~~-d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~~~gk~~A~~v~~i   73 (78)
                      +|+|+-.|.+.+-=-|.-+--. -+-+--=.-+..-...-+..|++||+|.|.+.+.  +|.+.-.+|++.
T Consensus        19 ~G~V~~vd~~~~~iti~H~pIp~l~wPaMTM~F~v~~~~~l~~l~~Gd~V~f~~~~~--~~~~~I~~i~~~   87 (88)
T 2vb2_X           19 TGVVKGIDLESKKITIHHDPIAAVNWPEMTMRFTITPQTKMSEIKTGDKVAFNFVQQ--GNLSLLQDIKVS   87 (88)
T ss_dssp             EEEEEEEETTTTEEEEEECCBGGGTBCSEEEEEECCTTCEECCCCTTCEEEEEEEEE--TTEEEEEEEEEC
T ss_pred             EEEEEEECCCCCEEEEECCCCCCCCCCCEEEEEECCCHHHHHCCCCCCEEEEEEEEC--CCEEEEEEEEEC
T ss_conf             899999837899899967774617998618887878954763499999999999981--991999999977


No 33 
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A
Probab=48.90  E-value=15  Score=17.22  Aligned_cols=45  Identities=22%  Similarity=0.459  Sum_probs=29.4

Q ss_pred             CCEEEEE-ECCCCEEEEEECCCCCCCCEEEEEEE----ECCCCCCC-CCCCCCEEE
Q ss_conf             7627751-46887465885488778837999950----00235884-468998899
Q gi|254780913|r    4 RGSIKWY-NPDKGYGFITPEGSTESGDDVFLHRS----AVASAGLF-NLTEGQLVT   53 (78)
Q Consensus         4 ~G~VKwf-n~~kGfGFI~~d~~~d~g~DvFvH~s----~i~~~g~~-~l~~G~~V~   53 (78)
                      .|+|.+- +..--||+-+     ++|-++++|+-    .|...++. .+++||+|.
T Consensus        57 ~G~V~~v~~T~HAigi~t-----~~G~evLiHiGiDTV~L~G~gF~~~V~~Gd~V~  107 (162)
T 1ax3_A           57 RGKILNVFPTKHAIGLQS-----DGGREILIHFGIDTVSLKGEGFTSFVSEGDRVE  107 (162)
T ss_dssp             CEEEEECCSSSSEEEEES-----SSSCEEEEECSSSTTTTTTTTEEESCCCCSEEC
T ss_pred             CEEEEEECCCCCEEEEEC-----CCCCEEEEEECCCHHHCCCCCEEEEECCCCEEC
T ss_conf             969999856896999997-----999799999864543218983189982699998


No 34 
>1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1
Probab=47.64  E-value=14  Score=17.31  Aligned_cols=54  Identities=9%  Similarity=0.014  Sum_probs=35.6

Q ss_pred             CCEEEEEECCCCEEEE-EECCCCCCCCEEEEEEEECCCCC----CCCCCCCCEEEEEEEECCCC
Q ss_conf             7627751468874658-85488778837999950002358----84468998899999986999
Q gi|254780913|r    4 RGSIKWYNPDKGYGFI-TPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQNDAN   62 (78)
Q Consensus         4 ~G~VKwfn~~kGfGFI-~~d~~~d~g~DvFvH~s~i~~~g----~~~l~~G~~V~F~i~~~~~~   62 (78)
                      .|+|+--.+   ||.. ..+.  -+|-+-|+|+|.|....    ...++.||.|.+.+..-+..
T Consensus        18 ~g~V~~i~~---~GafV~L~e--y~gieGli~isEls~~~i~~~~~~~kvGq~v~vkVl~vd~e   76 (308)
T 1q8k_A           18 MVNVRSIQE---MGAYVSLLE--YNNIEGMIHLSELSRRRIRSINKLIRIGRNECVKVIRVDKE   76 (308)
T ss_dssp             EEEEEEEET---TEEEEESCT--TTSCCEEECGGGTSCSSCSCCTTTCSSSCEEEEEEEEEETT
T ss_pred             EEEEEEEEC---CEEEEEECC--CCCCEEEEEHHHCCCCCCCCHHHHCCCCCEEEEEEEEECCC
T ss_conf             999999973---559999717--99908998989878754489899167999999999675077


No 35 
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metalloprotein, metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=47.41  E-value=16  Score=17.09  Aligned_cols=67  Identities=12%  Similarity=0.196  Sum_probs=34.8

Q ss_pred             CCEEEEEECCCCEEEEEECCCCC-CCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEE
Q ss_conf             76277514688746588548877-8837999950002358844689988999999869997111059996
Q gi|254780913|r    4 RGSIKWYNPDKGYGFITPEGSTE-SGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKL   72 (78)
Q Consensus         4 ~G~VKwfn~~kGfGFI~~d~~~d-~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~~~gk~~A~~v~~   72 (78)
                      +|+|+-.|.+.+-=-|.-+.-.+ +-+--=..+..-...-+..|++|++|.|++...  ++.+...+|+.
T Consensus        11 ~G~V~~vd~~~~~iti~H~~Ip~l~wPaMTM~F~v~~~~~l~~l~~Gd~V~F~~~~~--~~~~~i~~i~~   78 (80)
T 2qcp_X           11 TGVVKGIDLESKKITIHHDPIAAVNWPEMTMRFTITPQTKMSEIKTGDKVAFNFVQQ--GNLSLLQDIKV   78 (80)
T ss_dssp             EEEEEEEETTTTEEEEEECCBGGGTBCSEEEEEECCTTCEECCCCTTCEEEEEEEEE--TTEEEEEEEEE
T ss_pred             EEEEEEECCCCCEEEEECCCCCCCCCCCEEEEEECCCHHHHHCCCCCCEEEEEEEEC--CCEEEEEEEEE
T ss_conf             899999857899899977771307998648886858967873699999999999980--99399999997


No 36 
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=46.53  E-value=3.4  Score=20.83  Aligned_cols=59  Identities=20%  Similarity=0.291  Sum_probs=39.0

Q ss_pred             CCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCC----CCCCCCCEEEEEEEECCCCCCCCC
Q ss_conf             77627751468874658854887788379999500023588----446899889999998699971110
Q gi|254780913|r    3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL----FNLTEGQLVTYDYVQNDANGKYSA   67 (78)
Q Consensus         3 ~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~----~~l~~G~~V~F~i~~~~~~gk~~A   67 (78)
                      .+|+|+--   +-||-.+--   -.|.|-++|+|.|.....    ..|++||.|...+..-+++||..-
T Consensus       631 y~g~V~~i---~~fGafve~---~pg~~gL~HiSel~~~rv~~~~dv~~~Gd~i~Vk~~~~d~~G~i~l  693 (723)
T 3cdi_A          631 YTGKVTRI---VDFGAFVAI---GGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRL  693 (723)
T ss_dssp             ---------------------------------------------------------------------
T ss_pred             EEEEEEEE---EECEEEEEE---CCCCCEEEEEECCCCCCCCCHHHHCCCCCEEEEEEEEECCCCCEEE
T ss_conf             99999999---954299996---6999447880104676767852321789899999997989998887


No 37 
>3n7x_A Capsid protein; icosahedral virus capsid, virus-like particle, capsid protei barrel, parvovirus; 2.50A {Infectious hypodermal and hematopoietinecrosis virus}
Probab=42.68  E-value=16  Score=17.04  Aligned_cols=53  Identities=25%  Similarity=0.372  Sum_probs=35.3

Q ss_pred             CCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEE
Q ss_conf             76277514688746588548877883799995000235884468998899999
Q gi|254780913|r    4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY   56 (78)
Q Consensus         4 ~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i   56 (78)
                      -|.|||=.+.-|-=.--.|...++=..||..+|-|+.-.-..|+-|.+|.-+.
T Consensus       237 ggqikwdkpslgnlvypadhhtndwqqifmrmspikgpngdelklgcrvqadf  289 (329)
T 3n7x_A          237 GGQIKWDKPSLGNLVYPADHHTNDWQQIFMRMSPIKGPNGDELKLGCRVQADF  289 (329)
T ss_dssp             BTTBCCBCCTTSCCCCCCSSCCCCCCCEEEEECCCBCTTSCBCCEEEEEEEEE
T ss_pred             CCEEECCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEECCCEEEEEE
T ss_conf             75011268664574133435654199988433876699955000043664015


No 38 
>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B
Probab=41.14  E-value=11  Score=18.02  Aligned_cols=55  Identities=24%  Similarity=0.277  Sum_probs=36.0

Q ss_pred             CCCEEEEEECCCCEE-EEEECCCCCCCCEEEEEEEECCCCCC----CCCCCCCEEEEEEEECCCC
Q ss_conf             776277514688746-58854887788379999500023588----4468998899999986999
Q gi|254780913|r    3 HRGSIKWYNPDKGYG-FITPEGSTESGDDVFLHRSAVASAGL----FNLTEGQLVTYDYVQNDAN   62 (78)
Q Consensus         3 ~~G~VKwfn~~kGfG-FI~~d~~~d~g~DvFvH~s~i~~~g~----~~l~~G~~V~F~i~~~~~~   62 (78)
                      ..|+|+--.   -|| |+..+.  -++-+-|+|+|.|...-.    ..++.||.|.+.+..-++.
T Consensus        15 v~g~V~~i~---~~G~fV~l~e--y~~~eG~i~~sEis~~~i~~~~~~~~vG~~v~~kVi~vd~~   74 (266)
T 3cw2_C           15 LIATVKQVF---DYGSYVSLDE--YGGLQAFLPWSEVSSKWVKNIRDVLKENRKVIVKVIRVDRR   74 (266)
T ss_dssp             EEEEEEECC---SSSBEEEETT--TTSEECBBCGGGSSCSSCCCHHHHSCTTCEEEEEECCCCSS
T ss_pred             EEEEEEEEE---CCEEEEEECC--CCCEEEEEEHHHCCCCCCCCHHHHCCCCCEEEEEEEEECCC
T ss_conf             999999998---3359999757--79908998989968864479889288999999999665276


No 39 
>2kct_A Cytochrome C-type biogenesis protein CCME; solution structure, heme chaperone, cytochrome C biogenesis, OB-fold domain, NESG, PSI-2; NMR {Desulfovibrio vulgaris str}
Probab=40.53  E-value=20  Score=16.47  Aligned_cols=68  Identities=12%  Similarity=0.161  Sum_probs=44.2

Q ss_pred             CCCCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEE
Q ss_conf             987762775146887465885488778837999950002358844689988999999869997111059996
Q gi|254780913|r    1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKL   72 (78)
Q Consensus         1 mm~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~~~gk~~A~~v~~   72 (78)
                      |...|.|+|-+...+.=|...|. .+.+..+=|+++.+..+   ..++|+.|.-+=......|...|.+|-.
T Consensus        16 ~V~~gSi~~~~~~~~~~F~itD~-~~~~~~i~V~Y~G~~Pd---lF~eg~~VVveG~~~~~~g~F~A~~ila   83 (94)
T 2kct_A           16 TVAADGLTMLDGAPGVRFRLEDK-DNTSKTVWVLYKGAVPD---TFKPGVEVIIEGGLAPGEDTFKARTLMT   83 (94)
T ss_dssp             EECSTTCEECTTSSEEEEEEECS-SCTTCEEEEEEESCCCT---TCCTTCEEEEEEEECTTCSEEEEEEEEE
T ss_pred             EEECCCEEECCCCCEEEEEEEEC-CCCCEEEEEEECCCCCH---HHHCCCEEEEEEEEECCCCEEEEEEEEE
T ss_conf             99689399889996889999976-68866999998887965---8738997999999978999899849994


No 40 
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.24  E-value=13  Score=17.53  Aligned_cols=45  Identities=18%  Similarity=0.204  Sum_probs=25.9

Q ss_pred             CCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEE
Q ss_conf             762775146887465885488778837999950002358844689988999999
Q gi|254780913|r    4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV   57 (78)
Q Consensus         4 ~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~   57 (78)
                      -|.|+-....||||||+-+...    ++   ..+|+... ..+ .|..|.....
T Consensus        37 ~g~v~~~~~~~g~gFV~F~~~~----~a---~~al~~~~-~~~-~Gr~l~v~~a   81 (104)
T 2dhx_A           37 GGPVLSWQRLGCGGVLTFREPA----DA---ERVLAQAD-HEL-HGAQLSLRPA   81 (104)
T ss_dssp             CCCEEEEEEETTEEEEEESSHH----HH---HHHHTCSC-CBS-SSSBCEEEEC
T ss_pred             CEEEEEEEEECCCEEEEEECHH----HH---HHHHHCCC-CCC-CCEEEEEEEC
T ss_conf             2699997761885899992789----99---99985599-871-8708887455


No 41 
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=37.42  E-value=3.5  Score=20.77  Aligned_cols=58  Identities=28%  Similarity=0.272  Sum_probs=38.1

Q ss_pred             CCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCC-------C-CCCCCCCCEEEEEEEECCCCCCCC
Q ss_conf             776277514688746588548877883799995000235-------8-844689988999999869997111
Q gi|254780913|r    3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA-------G-LFNLTEGQLVTYDYVQNDANGKYS   66 (78)
Q Consensus         3 ~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~-------g-~~~l~~G~~V~F~i~~~~~~gk~~   66 (78)
                      .+|+|+--   +-||-.+--   -.|.|-++|+|.|...       . ...|++||.|...+..-+++||..
T Consensus       671 y~g~V~~i---~~fGafve~---~pg~~GllHiSel~~~~~~~rv~~v~d~~~~Gd~i~Vk~~~id~~gki~  736 (757)
T 1e3p_A          671 ILGSVVKT---TTFGAFVSL---LPGKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEIDSRGKLS  736 (757)
T ss_dssp             --CBEEEC---C-CSCEECC---C---CCCCC-------------------CCSSCBCCCCCCCCCSSCC--
T ss_pred             EEEEEEEE---EEEEEEEEE---CCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEE
T ss_conf             99999999---853299996---7998268882404665555455771212078989999999788999788


No 42 
>2fur_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.80A {Thermoplasma acidophilum} SCOP: b.45.1.1
Probab=36.86  E-value=22  Score=16.27  Aligned_cols=53  Identities=21%  Similarity=0.325  Sum_probs=35.2

Q ss_pred             CCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEEC
Q ss_conf             76277514688746588548877883799995000235884468998899999986
Q gi|254780913|r    4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN   59 (78)
Q Consensus         4 ~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~   59 (78)
                      .|++-..+  -|+=+|+|-.-.-.+.++++|-+. .......|..+.+|.|++...
T Consensus        34 v~~La~~d--~g~PyvvPl~f~~~~~~lYfH~a~-~G~K~~~l~~np~V~~~v~~~   86 (209)
T 2fur_A           34 TCTVSFID--GGIPYAIPMMLASEGKTIYLHGSM-KSRIYGILKTGQLIAISLLEI   86 (209)
T ss_dssp             EEEEEEEE--TTEEEEEEEECEEETTEEEEEEET-TSHHHHHHHTTCCEEEEEEEE
T ss_pred             EEEEEEEE--CCEEEEEEEEEEEECCEEEEEECC-HHHHHHHHHCCCCEEEEEEEC
T ss_conf             89999940--994599987999919989999755-068999986399569999822


No 43 
>2hq9_A MLL6688 protein; NP_107146.1, hypothetical protein, structural genomics, joint center for structural genomics, JCSG; HET: FAD; 1.95A {Mesorhizobium loti} SCOP: b.45.1.1
Probab=36.83  E-value=21  Score=16.41  Aligned_cols=55  Identities=7%  Similarity=0.094  Sum_probs=34.0

Q ss_pred             CCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEE
Q ss_conf             874658854887788379999500023588446899889999998699971110599
Q gi|254780913|r   14 KGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL   70 (78)
Q Consensus        14 kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~~~gk~~A~~v   70 (78)
                      .|+=+++|=.-.-.+..+++|-+  .....+.|..+-+|.|.+........++.+.+
T Consensus        29 dg~P~vvPv~f~~d~~~iy~~t~--~g~K~~~l~~np~V~~~v~~~~~~~~~~sV~v   83 (149)
T 2hq9_A           29 DGQPYVVPLYYAYSDAHLYAFSM--PGKKIEWMRANPRVSVQVDEHGQGRGWKSVVV   83 (149)
T ss_dssp             TTEEEEEEEECEEETTEEEEEEC--SSHHHHHHHHCCEEEEEEEEECSTTCEEEEEE
T ss_pred             CCCEEEEEEEEEEECCEEEEEEC--CCHHHHHHHCCCCEEEEEEECCCCCCEEEEEE
T ss_conf             99189999999998999999978--86689996569949999975589861589999


No 44 
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.57  E-value=26  Score=15.87  Aligned_cols=45  Identities=22%  Similarity=0.367  Sum_probs=25.5

Q ss_pred             CCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEE
Q ss_conf             76277514688746588548877883799995000235884468998899999
Q gi|254780913|r    4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY   56 (78)
Q Consensus         4 ~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i   56 (78)
                      -|.|+...-.|+||||+-....    +   -..||....-..| .|..+..+.
T Consensus        33 ~G~i~~v~~~~~~afV~f~~~~----~---A~~Ai~~l~g~~l-~g~~i~V~~   77 (90)
T 2dnp_A           33 RGRVIECDVVKDYAFVHMEKEA----D---AKAAIAQLNGKEV-KGKRINVEL   77 (90)
T ss_dssp             HSCEEEEEECSSCEEEEESCHH----H---HHHHHHHHTTCEE-TTEECEEEE
T ss_pred             HCCEEEEEECCCEEEEEECCHH----H---HHHHHHHHCCCEE-CCEEEEEEE
T ss_conf             4977488762636899989999----9---9999997299989-999979998


No 45 
>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A
Probab=28.55  E-value=33  Score=15.34  Aligned_cols=45  Identities=24%  Similarity=0.398  Sum_probs=28.4

Q ss_pred             CCEEEEEE-CCCCEEEEEECCCCCCCCEEEEEEEE----CCCCCCC-CCCCCCEEE
Q ss_conf             76277514-68874658854887788379999500----0235884-468998899
Q gi|254780913|r    4 RGSIKWYN-PDKGYGFITPEGSTESGDDVFLHRSA----VASAGLF-NLTEGQLVT   53 (78)
Q Consensus         4 ~G~VKwfn-~~kGfGFI~~d~~~d~g~DvFvH~s~----i~~~g~~-~l~~G~~V~   53 (78)
                      .|+|.+-- ..-.||+-+     ++|-++++|+-.    +...++. .+++||+|+
T Consensus        57 dG~I~~i~~T~HAigi~t-----~~G~eiLiHiGidTv~l~G~gF~~~vk~Gd~V~  107 (161)
T 1f3z_A           57 DGTIGKIFETNHAFSIES-----DSGVELFVHFGIDTVELKGEGFKRIAEEGQRVK  107 (161)
T ss_dssp             SEEEEEECTTSSEEEEEE-----TTSCEEEEECSBSGGGGTTTTEEECSCTTCEEC
T ss_pred             CEEEEEECCCCCEEEEEE-----CCCCEEEEEECCCHHHCCCCCEEEEECCCCEEE
T ss_conf             979999868997999994-----899899999764577618974089976899993


No 46 
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A
Probab=27.92  E-value=30  Score=15.53  Aligned_cols=21  Identities=29%  Similarity=0.441  Sum_probs=16.7

Q ss_pred             CCCEEEEEECCCCEEEEEECC
Q ss_conf             776277514688746588548
Q gi|254780913|r    3 HRGSIKWYNPDKGYGFITPEG   23 (78)
Q Consensus         3 ~~G~VKwfn~~kGfGFI~~d~   23 (78)
                      .-|.|+..+..+||+||+-+.
T Consensus        46 ~~G~i~~v~~~~g~afV~f~~   66 (97)
T 2xnq_A           46 PYGHIMQINIKNAFGFIQFDN   66 (97)
T ss_dssp             GGSCEEEEEECSSEEEEEESS
T ss_pred             HCCCEEEEEEECCEEEEEECC
T ss_conf             549957999858878998699


No 47 
>1sr3_A APO-CCME; OB fold, beta barrel, flexible C-terminal domain, chaperone; NMR {Escherichia coli} SCOP: b.40.9.1
Probab=26.76  E-value=35  Score=15.15  Aligned_cols=62  Identities=18%  Similarity=0.148  Sum_probs=39.7

Q ss_pred             CCCCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEE
Q ss_conf             9877627751468874658854887788379999500023588446899889999998699971110599
Q gi|254780913|r    1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL   70 (78)
Q Consensus         1 mm~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~~~gk~~A~~v   70 (78)
                      |...|.|+|-.....+=|+.-|    +...|-|..+-+..+-   .++|+.|.-+ ..-..++...|..|
T Consensus        36 ~V~~gSi~~~~~~~~~~F~itD----~~~~i~V~Y~G~lPdl---F~eg~~VVve-G~~~~~~~f~A~~v   97 (136)
T 1sr3_A           36 MVMPGSVQRDPNSLKVTFTIYD----AEGSVDVSYEGILPDL---FREGQGVVVQ-GELEKGNHILAKEV   97 (136)
T ss_dssp             EECTTTCEECSSSSEEEEEEEC----SSCEEEEEEESCCCTT---CCTTSEEEEE-EEECSSSEEEESSC
T ss_pred             EEEEEEEEECCCCCEEEEEEEC----CCCEEEEEECCCCCHH---HCCCCEEEEE-EEECCCCEEEEEEE
T ss_conf             9973158872897589999986----8846999985769645---4179809999-99888998999999


No 48 
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=26.65  E-value=35  Score=15.14  Aligned_cols=58  Identities=24%  Similarity=0.283  Sum_probs=43.9

Q ss_pred             CCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCC---------C----CCCCCCCCEEEEEEEECCCCCC
Q ss_conf             776277514688746588548877883799995000235---------8----8446899889999998699971
Q gi|254780913|r    3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA---------G----LFNLTEGQLVTYDYVQNDANGK   64 (78)
Q Consensus         3 ~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~---------g----~~~l~~G~~V~F~i~~~~~~gk   64 (78)
                      ..|+|+--.+.-+=-||..    -.+++-|+|++++...         +    -..|.+||.|--++...+.+.|
T Consensus        49 Y~GrV~~v~pgl~AAFVdi----G~~k~gFL~~~di~~~~~~~~~~~~~~~~I~~~l~~Gq~ilVQV~ke~~~~K  119 (517)
T 2bx2_L           49 YKGKITRIEPSLEAAFVDY----GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNK  119 (517)
T ss_dssp             EEEEEEEEETTTTEEEEES----SSSSCEEEEGGGSCGGGCC-------CCCGGGTCCTTCEEEEEEEECCCTTC
T ss_pred             EEEEEEECCCCCCEEEEEE----CCCCCEEEEHHHCCHHHCCCCCCCCCCCCHHHCCCCCCEEEEEECCCCCCCC
T ss_conf             9999942379886699961----8997148886884845415552224565554407899989999724676777


No 49 
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=22.44  E-value=26  Score=15.90  Aligned_cols=13  Identities=38%  Similarity=0.652  Sum_probs=9.7

Q ss_pred             ECCCCEEEEEECC
Q ss_conf             4688746588548
Q gi|254780913|r   11 NPDKGYGFITPEG   23 (78)
Q Consensus        11 n~~kGfGFI~~d~   23 (78)
                      +..||||||.-..
T Consensus        38 ~~~kG~~FV~F~~   50 (75)
T 1iqt_A           38 NKRRGFCFITFKE   50 (75)
T ss_dssp             SSSCCCEEEECSS
T ss_pred             CCCCEEEEEEECC
T ss_conf             9954089999888


No 50 
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.15  E-value=37  Score=15.03  Aligned_cols=44  Identities=23%  Similarity=0.368  Sum_probs=24.1

Q ss_pred             CCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCC-CCCCCCCCCCEEEEEE
Q ss_conf             7627751468874658854887788379999500023-5884468998899999
Q gi|254780913|r    4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVAS-AGLFNLTEGQLVTYDY   56 (78)
Q Consensus         4 ~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~-~g~~~l~~G~~V~F~i   56 (78)
                      -|.|.-..-.||||||+-+...+    .   ..+|+. .+ ..+ .|.++..+.
T Consensus        32 ~G~i~~v~i~rg~afV~f~~~~~----A---~~Ai~~l~g-~~~-~g~~l~V~~   76 (90)
T 2dnq_A           32 YGKVLECDIIKNYGFVHIEDKTA----A---EDAIRNLHH-YKL-HGVNINVEA   76 (90)
T ss_dssp             SSCEEEEEEETTEEEEEESSHHH----H---HHHHHHHTT-CBC-SSCBCEEEC
T ss_pred             HCCEEEEEECCCCEEEEECCHHH----H---HHHHHHCCC-CEE-CCEEEEEEE
T ss_conf             19866998634519999899999----9---999998099-989-999989997


No 51 
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=21.51  E-value=45  Score=14.57  Aligned_cols=45  Identities=24%  Similarity=0.378  Sum_probs=27.5

Q ss_pred             CCEEEEEE-CCCCEEEEEECCCCCCCCEEEEEEE----ECCCCCCC-CCCCCCEEE
Q ss_conf             76277514-6887465885488778837999950----00235884-468998899
Q gi|254780913|r    4 RGSIKWYN-PDKGYGFITPEGSTESGDDVFLHRS----AVASAGLF-NLTEGQLVT   53 (78)
Q Consensus         4 ~G~VKwfn-~~kGfGFI~~d~~~d~g~DvFvH~s----~i~~~g~~-~l~~G~~V~   53 (78)
                      .|+|.+-- ..--||+.+     ++|-+|++|+-    .|...++. .+++||+|.
T Consensus        52 dG~V~~i~~T~HAigi~t-----~~G~eiLIHiGidTV~L~G~gF~~~v~~Gd~V~  102 (154)
T 2gpr_A           52 SGKLVTAFPTKHAFGIQT-----KSGVEILLHIGLDTVSLDGNGFESFVTQDQEVN  102 (154)
T ss_dssp             CEEEEECCTTCSEEEEEC-----TTSCEEEEECSSSGGGGTTCSEEECCCTTCEEC
T ss_pred             CCEEEEECCCCCEEEEEC-----CCCCEEEEEECCCHHHCCCCCEEEEECCCCEEC
T ss_conf             829999868997999996-----999899999762541038973699973899995


No 52 
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=21.35  E-value=43  Score=14.64  Aligned_cols=19  Identities=26%  Similarity=0.433  Sum_probs=14.8

Q ss_pred             CEEEEEECCCCEEEEEECC
Q ss_conf             6277514688746588548
Q gi|254780913|r    5 GSIKWYNPDKGYGFITPEG   23 (78)
Q Consensus         5 G~VKwfn~~kGfGFI~~d~   23 (78)
                      |.|+-..-.||||||.-..
T Consensus        36 G~v~~v~~~r~~afV~f~~   54 (103)
T 2dgu_A           36 GKLERVKKLKDYAFIHFDE   54 (103)
T ss_dssp             SCEEEEEECSSCEEEEESS
T ss_pred             CCCCCCCEEEEEEEEEECC
T ss_conf             9743220564477889799


No 53 
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.03  E-value=36  Score=15.11  Aligned_cols=21  Identities=24%  Similarity=0.321  Sum_probs=16.0

Q ss_pred             CCCEEEEEECCCCEEEEEECC
Q ss_conf             776277514688746588548
Q gi|254780913|r    3 HRGSIKWYNPDKGYGFITPEG   23 (78)
Q Consensus         3 ~~G~VKwfn~~kGfGFI~~d~   23 (78)
                      .-|.|.-..-.|||+||+-+.
T Consensus        33 ~~G~i~~~~i~k~~afV~f~~   53 (92)
T 2dgt_A           33 EYGPVIECDIVKDYAFVHMER   53 (92)
T ss_dssp             TTSCCCEEEECSSEEEEEESC
T ss_pred             HHCCCCEEEECCCEEEEEECC
T ss_conf             859972774646378999899


No 54 
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.44  E-value=28  Score=15.66  Aligned_cols=12  Identities=42%  Similarity=0.850  Sum_probs=9.2

Q ss_pred             CCCCEEEEEECC
Q ss_conf             688746588548
Q gi|254780913|r   12 PDKGYGFITPEG   23 (78)
Q Consensus        12 ~~kGfGFI~~d~   23 (78)
                      ..||||||+-+.
T Consensus        50 ~~kGfaFV~F~~   61 (114)
T 2dnl_A           50 PPKGYAFLLFQE   61 (114)
T ss_dssp             CTTSEEEECCSS
T ss_pred             CCCCEEEEEECC
T ss_conf             877679999789


No 55 
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=20.23  E-value=23  Score=16.15  Aligned_cols=12  Identities=8%  Similarity=-0.225  Sum_probs=8.9

Q ss_pred             CCCCEEEEEECC
Q ss_conf             688746588548
Q gi|254780913|r   12 PDKGYGFITPEG   23 (78)
Q Consensus        12 ~~kGfGFI~~d~   23 (78)
                      ..||||||+-..
T Consensus        46 ~srG~gFV~F~~   57 (136)
T 2j8a_A           46 LPLHVYLIKYAS   57 (136)
T ss_dssp             CEEEEEEEECC-
T ss_pred             CEEEEEEEEEEC
T ss_conf             754699999814


Done!