Query gi|254780913|ref|YP_003065326.1| cold shock protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 78 No_of_seqs 112 out of 2159 Neff 6.0 Searched_HMMs 23785 Date Tue May 31 22:12:26 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780913.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 3a0j_A Cold shock protein; OB- 99.9 4.8E-24 2E-28 153.9 8.0 72 2-77 1-72 (73) 2 3cam_A Cold-shock domain famil 99.9 2.4E-23 9.9E-28 150.1 7.3 66 2-72 1-66 (67) 3 3i2z_B RNA chaperone, negative 99.9 1.7E-22 7E-27 145.3 7.8 67 2-73 5-71 (71) 4 1c9o_A CSPB, cold-shock protei 99.9 1.6E-22 6.8E-27 145.4 7.6 66 2-73 1-66 (66) 5 1h95_A CSD, Y-box binding prot 99.9 2.9E-22 1.2E-26 144.0 6.3 65 3-72 9-77 (79) 6 2k5n_A Putative cold-shock pro 99.9 1.4E-21 5.9E-26 140.2 8.6 68 1-76 1-68 (74) 7 1g6p_A Cold shock protein TMCS 99.8 1.2E-21 5E-26 140.6 6.3 65 4-74 2-66 (66) 8 2kcm_A Cold shock domain famil 99.8 3.2E-20 1.4E-24 132.6 6.1 65 4-74 2-67 (74) 9 1wfq_A UNR protein; beta-barre 99.8 1.4E-18 5.9E-23 123.4 7.9 71 1-77 17-87 (89) 10 2ytx_A Cold shock domain-conta 99.7 1.4E-18 6.1E-23 123.4 6.4 69 1-77 17-85 (97) 11 2bh8_A 1B11; transcription, mo 99.7 7.1E-18 3E-22 119.5 6.5 64 2-68 16-81 (101) 12 2yty_A Cold shock domain-conta 99.7 3.6E-18 1.5E-22 121.1 5.0 70 2-78 18-87 (88) 13 1x65_A UNR protein; cell-free 99.7 2.2E-18 9.4E-23 122.3 1.4 69 2-77 8-77 (89) 14 2ytv_A Cold shock domain-conta 99.7 1.8E-17 7.4E-22 117.3 4.6 71 2-78 8-78 (79) 15 2id0_A Exoribonuclease 2; RNAs 96.9 0.0018 7.5E-08 39.1 6.1 61 3-76 22-82 (644) 16 1a62_A RHO; transcription term 94.1 0.045 1.9E-06 31.3 4.1 65 4-73 52-119 (130) 17 2k52_A Uncharacterized protein 93.2 0.16 6.8E-06 28.2 5.6 65 3-75 9-73 (80) 18 3ice_A Transcription terminati 93.1 0.062 2.6E-06 30.5 3.4 58 13-73 62-122 (422) 19 3l0o_A Transcription terminati 92.9 0.099 4.1E-06 29.4 4.2 50 13-65 66-117 (427) 20 2eqs_A ATP-dependent RNA helic 89.0 0.29 1.2E-05 26.8 3.5 66 3-74 16-87 (103) 21 2khi_A 30S ribosomal protein S 82.0 2.5 0.0001 21.6 5.4 56 3-64 34-95 (115) 22 1kl9_A Eukaryotic translation 79.9 1.9 7.8E-05 22.3 4.1 57 3-64 19-80 (182) 23 3go5_A Multidomain protein wit 79.8 3.4 0.00014 20.8 6.0 28 29-56 95-122 (285) 24 1wi5_A RRP5 protein homolog; S 72.9 4.6 0.0002 20.1 4.6 59 1-64 23-86 (119) 25 2k4k_A GSP13, general stress p 72.0 2.8 0.00012 21.3 3.3 56 3-64 11-71 (130) 26 3bzc_A TEX; helix-turn-helix, 65.4 7.1 0.0003 19.0 4.2 55 1-61 656-714 (785) 27 2a19_A EIF-2- alpha, eukaryoti 65.2 6 0.00025 19.4 3.8 55 3-62 19-78 (175) 28 2cqo_A Nucleolar protein of 40 64.3 8.1 0.00034 18.7 5.7 50 4-59 27-81 (119) 29 2khj_A 30S ribosomal protein S 63.8 6.2 0.00026 19.4 3.7 56 3-64 35-94 (109) 30 3aev_A Translation initiation 59.8 8.7 0.00037 18.5 3.9 55 3-62 15-74 (275) 31 2vnu_D Exosome complex exonucl 58.3 10 0.00044 18.1 5.2 45 4-57 34-80 (760) 32 2vb2_X Copper protein, cation 51.2 14 0.00058 17.4 7.3 68 4-73 19-87 (88) 33 1ax3_A Iiaglc, glucose permeas 48.9 15 0.00063 17.2 4.0 45 4-53 57-107 (162) 34 1q8k_A Eukaryotic translation 47.6 14 0.00061 17.3 3.4 54 4-62 18-76 (308) 35 2qcp_X Cation efflux system pr 47.4 16 0.00067 17.1 7.3 67 4-72 11-78 (80) 36 3cdi_A Polynucleotide phosphor 46.5 3.4 0.00014 20.8 0.0 59 3-67 631-693 (723) 37 3n7x_A Capsid protein; icosahe 42.7 16 0.00068 17.0 3.0 53 4-56 237-289 (329) 38 3cw2_C Translation initiation 41.1 11 0.00045 18.0 1.9 55 3-62 15-74 (266) 39 2kct_A Cytochrome C-type bioge 40.5 20 0.00086 16.5 7.5 68 1-72 16-83 (94) 40 2dhx_A Poly (ADP-ribose) polym 38.2 13 0.00055 17.5 2.0 45 4-57 37-81 (104) 41 1e3p_A Guanosine pentaphosphat 37.4 3.5 0.00015 20.8 -1.1 58 3-66 671-736 (757) 42 2fur_A Hypothetical protein; s 36.9 22 0.00093 16.3 2.9 53 4-59 34-86 (209) 43 2hq9_A MLL6688 protein; NP_107 36.8 21 0.00088 16.4 2.8 55 14-70 29-83 (149) 44 2dnp_A RNA-binding protein 14; 28.6 26 0.0011 15.9 2.2 45 4-56 33-77 (90) 45 1f3z_A EIIA-GLC, glucose-speci 28.6 33 0.0014 15.3 4.8 45 4-53 57-107 (161) 46 2xnq_A Nuclear polyadenylated 27.9 30 0.0013 15.5 2.4 21 3-23 46-66 (97) 47 1sr3_A APO-CCME; OB fold, beta 26.8 35 0.0015 15.2 4.7 62 1-70 36-97 (136) 48 2bx2_L Ribonuclease E, RNAse E 26.7 35 0.0015 15.1 7.7 58 3-64 49-119 (517) 49 1iqt_A AUF1, heterogeneous nuc 22.4 26 0.0011 15.9 1.2 13 11-23 38-50 (75) 50 2dnq_A RNA-binding protein 4B; 22.1 37 0.0016 15.0 2.0 44 4-56 32-76 (90) 51 2gpr_A Glucose-permease IIA co 21.5 45 0.0019 14.6 4.2 45 4-53 52-102 (154) 52 2dgu_A Heterogeneous nuclear r 21.4 43 0.0018 14.6 2.2 19 5-23 36-54 (103) 53 2dgt_A RNA-binding protein 30; 21.0 36 0.0015 15.1 1.7 21 3-23 33-53 (92) 54 2dnl_A Cytoplasmic polyadenyla 20.4 28 0.0012 15.7 1.1 12 12-23 50-61 (114) 55 2j8a_A Histone-lysine N-methyl 20.2 23 0.00098 16.1 0.6 12 12-23 46-57 (136) No 1 >3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} Probab=99.90 E-value=4.8e-24 Score=153.93 Aligned_cols=72 Identities=36% Similarity=0.714 Sum_probs=63.3 Q ss_pred CCCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEECCCCC Q ss_conf 8776277514688746588548877883799995000235884468998899999986999711105999635788 Q gi|254780913|r 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKSS 77 (78) Q Consensus 2 m~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~~~gk~~A~~v~~i~~~~ 77 (78) |++|+|||||++||||||++| +++|||||+|+|+..+++.|.+||+|+|++.+++.+..++|.+|++|.++. T Consensus 1 M~~G~Vkwf~~~kGfGFI~~d----~g~dvFvH~s~i~~~g~~~l~~G~~V~f~~~~~~~~kg~~A~~V~~v~~a~ 72 (73) T 3a0j_A 1 MQKGRVKWFNAEKGYGFIERE----GDTDVFVHYTAINAKGFRTLNEGDIVTFDVEPGRNGKGPQAVNVTVVEPAR 72 (73) T ss_dssp CEEEEEEEEETTTTEEEEECT----TSCCEEEEGGGBCSSSCSSCCTTCEEEEEEECCSCCSSSEEEEEEEEECCC T ss_pred CCCEEEEEEECCCCEEEECCC----CCCEEEEEEHHHCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEEECCCCC T ss_conf 998399989299984783158----997099984775523698789999999999989999887588888615789 No 2 >3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, structural genomics, oxford protein production facility, OPPF; 2.60A {Neisseria meningitidis MC58} Probab=99.88 E-value=2.4e-23 Score=150.09 Aligned_cols=66 Identities=41% Similarity=0.782 Sum_probs=60.5 Q ss_pred CCCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEE Q ss_conf 87762775146887465885488778837999950002358844689988999999869997111059996 Q gi|254780913|r 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKL 72 (78) Q Consensus 2 m~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~~~gk~~A~~v~~ 72 (78) |.+|+|||||.+||||||+|| ++++|||||+|+|+..+++.|.+||+|+|++++++++ ++|.+|+. T Consensus 1 M~~G~Vkwf~~~kGyGFI~~~---~~~~dvFvH~s~l~~~~~~~l~~G~~V~f~~~~~~~G--~~A~~V~~ 66 (67) T 3cam_A 1 MATGIVKWFNDAKGFGFITPD---EGGEDLFAHFSAINMEGFKTLKEGQRVSFDVTTGPKG--KQAANIQA 66 (67) T ss_dssp CEEEEEEEEETTTTEEEEEET---TSCCCEEEEGGGBCGGGGSSCCTTCEEEEEEEEETTE--EEEEEEEE T ss_pred CCCEEEEEEECCCCCEEEEEC---CCCEEEEEEEHHHCCCCCCCCCCCCEEEEEEEECCCC--CCCCEEEC T ss_conf 998399999599994899977---9972899984561522698589999999999989999--46115992 No 3 >3i2z_B RNA chaperone, negative regulator of CSPA transcription; beta barrel, DNA binding protein/transcription, cytoplasm, gene regulation; 1.10A {Salmonella typhimurium} PDB: 1mjc_A 3mef_A Probab=99.87 E-value=1.7e-22 Score=145.34 Aligned_cols=67 Identities=40% Similarity=0.768 Sum_probs=60.6 Q ss_pred CCCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEC Q ss_conf 877627751468874658854887788379999500023588446899889999998699971110599963 Q gi|254780913|r 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73 (78) Q Consensus 2 m~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~~~gk~~A~~v~~i 73 (78) +.+|+|||||++||||||+|| ++++|||+|+|+|...+++.|.+||+|+|++.+++++ ++|.+|++| T Consensus 5 r~~G~Vk~fd~~kGyGFI~~d---~g~~diF~H~s~l~~~~~~~l~~G~~V~f~~~~~~kG--~~A~~V~~l 71 (71) T 3i2z_B 5 KIKGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKG--PSAANVTAL 71 (71) T ss_dssp CEEEEEEEEETTTTEEEEEET---TCCCCEEEEGGGBCCSSCCCCCTTCEEEEEEEEETTE--EEEEEEEEC T ss_pred EEEEEEEEECCCCCEEEEEEC---CCCCEEEEEEHHHCCCCCCCCCCCCEEEEEEEECCCC--CEEEEEEEC T ss_conf 115799999499984899868---9982299990882533798789999999999969999--786888959 No 4 >1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 2es2_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2i5m_X 2i5l_X Probab=99.87 E-value=1.6e-22 Score=145.42 Aligned_cols=66 Identities=42% Similarity=0.808 Sum_probs=59.8 Q ss_pred CCCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEC Q ss_conf 877627751468874658854887788379999500023588446899889999998699971110599963 Q gi|254780913|r 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73 (78) Q Consensus 2 m~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~~~gk~~A~~v~~i 73 (78) |.+|+|||||++||||||+|| +|+|||+|+|+|...+++.|.+||+|+|++.+++++ ++|.+|+.| T Consensus 1 M~~G~Vk~f~~~kGfGFI~~d----~g~diF~H~s~l~~~~~~~l~~G~~V~f~~~~~~~G--~~A~~V~~l 66 (66) T 1c9o_A 1 MQRGKVKWFNNEKGYGFIEVE----GGSDVFVHFTAIQGEGFKTLEEGQEVSFEIVQGNRG--PQAANVVKL 66 (66) T ss_dssp CEEEEEEEEETTTTEEEEEET----TEEEEEEEGGGBCSSSCCCCCTTCEEEEEEEEETTE--EEEEEEEEC T ss_pred CCCEEEEEEECCCCEEEEECC----CCCEEEEEEEHHCCCCCCCCCCCCEEEEEEEECCCC--CEEEEEEEC T ss_conf 998099999699984998369----993899997041515788679999999999989999--697878989 No 5 >1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5 Probab=99.86 E-value=2.9e-22 Score=144.00 Aligned_cols=65 Identities=32% Similarity=0.695 Sum_probs=56.9 Q ss_pred CCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCC----CCCCCCCCEEEEEEEECCCCCCCCCEEEEE Q ss_conf 7762775146887465885488778837999950002358----844689988999999869997111059996 Q gi|254780913|r 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQNDANGKYSAENLKL 72 (78) Q Consensus 3 ~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g----~~~l~~G~~V~F~i~~~~~~gk~~A~~v~~ 72 (78) .+|+|||||++||||||+|| |+++|||||+|+|+..+ ++.|.+||+|+|++.+++++ ++|.||+. T Consensus 9 ~~G~VKwfn~~KGfGFI~~d---dg~~DvFvH~s~i~~~~~~~~~~~L~~G~~V~f~~~~~~~g--~~A~~Vtg 77 (79) T 1h95_A 9 VLGTVKWFNVRNGYGFINRN---DTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKG--AEAANVTG 77 (79) T ss_dssp EEEEEEEEETTTTEEEEEEG---GGTEEEEEEGGGBCSCCCSCCSCSCCSSCEEEEEEEECSSS--EEEESBCC T ss_pred EEEEEEEEECCCCCEEEEEC---CCCEEEEEEHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCC--CEEEEEEC T ss_conf 24899999689991899858---99704999969930479743334179999999999989999--88699777 No 6 >2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, structural genomics, protein structure initiative; NMR {Pectobacterium atrosepticum} Probab=99.85 E-value=1.4e-21 Score=140.19 Aligned_cols=68 Identities=34% Similarity=0.527 Sum_probs=60.8 Q ss_pred CCCCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEECCCC Q ss_conf 9877627751468874658854887788379999500023588446899889999998699971110599963578 Q gi|254780913|r 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKS 76 (78) Q Consensus 1 mm~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~~~gk~~A~~v~~i~~~ 76 (78) |+.+|+|||||++||||||++| +|+|||||+|+|. +.+.|.+|++|+|++.+++++ ++|.+|++||-. T Consensus 1 M~~~G~Vk~~~~~kGfGFI~~~----~G~DvF~H~s~l~--g~~~l~~G~~V~F~~~~~~kG--~~A~~V~ii~~e 68 (74) T 2k5n_A 1 MAMNGTITTWFKDKGFGFIKDE----NGDNRYFHVIKVA--NPDLIKKDAAVTFEPTTNNKG--LSAYAVKVVPLE 68 (74) T ss_dssp CCEEEEEEEEETTTTEEEEEES----SSCEEEEEGGGBS--SGGGCCTTCEEEEEEEECSSS--EEEEEEEECCSS T ss_pred CCCCEEEEEEECCCCEEEEEEC----CCCCEEEEEEEEC--CCCCCCCCCEEEEEEEECCCC--CEEEEEEEECCC T ss_conf 9855599999899996898746----9983999987207--988559998999999989998--357899997972 No 7 >1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5 Probab=99.84 E-value=1.2e-21 Score=140.58 Aligned_cols=65 Identities=42% Similarity=0.825 Sum_probs=58.9 Q ss_pred CCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEECC Q ss_conf 76277514688746588548877883799995000235884468998899999986999711105999635 Q gi|254780913|r 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVP 74 (78) Q Consensus 4 ~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~~~gk~~A~~v~~i~ 74 (78) +|+|||||++||||||+|| +|+|||+|+|+|+..+++.|.+||+|+|++.+++++ ++|.+|++|. T Consensus 2 ~G~Vk~f~~~kGfGFI~~~----~g~dvFvH~s~l~~~g~~~l~~G~~V~f~~~~~~~G--~~A~~V~~id 66 (66) T 1g6p_A 2 RGKVKWFDSKKGYGFITKD----EGGDVFVHWSAIEMEGFKTLKEGQVVEFEIQEGKKG--PQAAHVKVVE 66 (66) T ss_dssp CEEEEEEETTTTEEEEEET----TSCBCBBCSSSSCCSSCCCCCSSSEEEEEEECSSSC--CEEEEEEEEC T ss_pred EEEEEEEECCCCEEEEECC----CCCEEEEEHHHHCCCCCCCCCCCCEEEEEEEECCCC--CEEEEEEECC T ss_conf 2899999399982898718----996399995881633699789999999999989899--7998999449 No 8 >2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Shewanella oneidensis mr-1} Probab=99.80 E-value=3.2e-20 Score=132.58 Aligned_cols=65 Identities=28% Similarity=0.466 Sum_probs=56.6 Q ss_pred CCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECC-CCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEECC Q ss_conf 762775146887465885488778837999950002-35884468998899999986999711105999635 Q gi|254780913|r 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA-SAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVP 74 (78) Q Consensus 4 ~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~-~~g~~~l~~G~~V~F~i~~~~~~gk~~A~~v~~i~ 74 (78) +|+|||||+.||||||++| +|+|||||+|+|. ..+++.|.+||+|+|++.+++++ ++|.+|++-- T Consensus 2 ~G~Vk~f~~~KGfGFI~~~----dg~DvFvH~s~l~~~~~~~~L~~G~~V~F~~~~~~kG--~~A~~V~lp~ 67 (74) T 2kcm_A 2 KGKVVSYLAAKKYGFIQGD----DGESYFLHFSELLDKKDEGKLVKGSMVHFDPTPTPKG--LAAKAISLPL 67 (74) T ss_dssp EEEEEEEETTTTEEEEEET----TSCEECCCGGGSSCSGGGTTCCTTSEEEEEEECTTTS--CEEEEEECCS T ss_pred EEEEEEEECCCCEEEEECC----CCCEEEEEEEHHCCCCCCCCCCCCCEEEEEEEECCCC--CEEEEEEEEE T ss_conf 3799999799987388659----9988999940523546886369999999999989999--6748999720 No 9 >1wfq_A UNR protein; beta-barrel, translational regulation, RNA chaperone, RNA/DNA binding, QB fold, greek-KEY topology, structural genomics; NMR {Homo sapiens} SCOP: b.40.4.5 Probab=99.76 E-value=1.4e-18 Score=123.42 Aligned_cols=71 Identities=27% Similarity=0.367 Sum_probs=61.9 Q ss_pred CCCCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEECCCCC Q ss_conf 98776277514688746588548877883799995000235884468998899999986999711105999635788 Q gi|254780913|r 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKSS 77 (78) Q Consensus 1 mm~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~~~gk~~A~~v~~i~~~~ 77 (78) +|.+|+|+||+ +|||||+++ ++++|||||+|+|+ .+++.|.+||+|+|++.++++++|++|++|..+..-+ T Consensus 17 ~r~~G~V~~~~--~gfGFI~~~---~g~~dvFfH~s~i~-~~~~~l~~G~~V~F~v~~~~r~gk~~Av~V~~i~~p~ 87 (89) T 1wfq_A 17 LRETGVIEKLL--TSYGFIQCS---ERQARLFFHCSQYN-GNLQDLKVGDDVEFEVSSDRRTGKPIAVKLVKISGPS 87 (89) T ss_dssp CEEEEEEEEEC--SSEEEEEET---TTTEEEEEETTTCS-SCTTTCCTTCCEEEEEEECSSSCCEEEEEEEESSCCC T ss_pred EEEEEEEEEEE--CCCCEEEEC---CCCCCEEEEEHHHC-CCCCCCCCCCEEEEEEEECCCCCEEEEEEEEECCCCC T ss_conf 17889999984--820258807---99976999860423-7886268999999999979989906878888888899 No 10 >2ytx_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens} Probab=99.74 E-value=1.4e-18 Score=123.36 Aligned_cols=69 Identities=25% Similarity=0.454 Sum_probs=59.3 Q ss_pred CCCCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEECCCCC Q ss_conf 98776277514688746588548877883799995000235884468998899999986999711105999635788 Q gi|254780913|r 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKSS 77 (78) Q Consensus 1 mm~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~~~gk~~A~~v~~i~~~~ 77 (78) |+.+|+|+||+ +|||||+++ ++++|||||+|+|.. +++.|.+|++|+|++.++ .++++|.+|++|+.++ T Consensus 17 ~r~~G~I~~~k--~GfGFI~~~---~g~~diFfH~s~~~~-~~~~l~~G~~V~F~~~~~--~~~~~A~~V~~l~~g~ 85 (97) T 2ytx_A 17 ARCQGVVCAMK--EAFGFIERG---DVVKEIFFHYSEFKG-DLETLQPGDDVEFTIKDR--NGKEVATDVRLLPQGT 85 (97) T ss_dssp CCEEEEECCCC--SSEEEEECS---SSCCCEEEETTTCCS-CTTSCCSCCEEEEEECCC--SSSCBEEEEEECCCSS T ss_pred CEEEEEEEEEE--CCEEEEEEC---CCCCCEEEEEHHHHC-CCCCCCCCCEEEEEEEEC--CCCCEEEEEEECCCCC T ss_conf 37889998993--818189718---999519999478506-666488999999999938--9997888879989997 No 11 >2bh8_A 1B11; transcription, molecular evolution, unique architecture, activator, transcription regulation, phosphorylation; 1.9A {Escherichia coli} Probab=99.72 E-value=7.1e-18 Score=119.50 Aligned_cols=64 Identities=36% Similarity=0.566 Sum_probs=54.1 Q ss_pred CCCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCC--CCCCCCCCEEEEEEEECCCCCCCCCE Q ss_conf 87762775146887465885488778837999950002358--84468998899999986999711105 Q gi|254780913|r 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG--LFNLTEGQLVTYDYVQNDANGKYSAE 68 (78) Q Consensus 2 m~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g--~~~l~~G~~V~F~i~~~~~~gk~~A~ 68 (78) +.+|+|||||+.||||||+|| ++++|||+|+|+|+..+ .+.|++|+.|+|++......|...+. T Consensus 16 ~~~g~vk~f~~~kg~gFi~~~---~g~~d~f~h~SAIq~~G~~~~~l~~G~~V~g~V~~itdfGaFV~i 81 (101) T 2bh8_A 16 KMTGIVKWFNADKGFGFITPD---DGSKDVFVHFSAGSSGAAVRGNPQQGDRVEGKIKSITDFGIFIGL 81 (101) T ss_dssp CEEEEEEEEEGGGTEEEEEES---SSSCEEEEECCCSCSSSCCCCCCCTTCEEEEEEEECCSEEEEECT T ss_pred CEEEEEEEEECCCCEEEEECC---CCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCEEEEE T ss_conf 446879978589981887247---896248889876543333331642114999999985589738850 No 12 >2yty_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens} Probab=99.72 E-value=3.6e-18 Score=121.14 Aligned_cols=70 Identities=23% Similarity=0.395 Sum_probs=59.5 Q ss_pred CCCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEECCCCCC Q ss_conf 87762775146887465885488778837999950002358844689988999999869997111059996357889 Q gi|254780913|r 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKSSN 78 (78) Q Consensus 2 m~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~~~gk~~A~~v~~i~~~~~ 78 (78) +.+|+|+|| .||||||+++ ++++|||||+|+|.. +++.|.+|++|+|++.+ +++|+++|.||+.+...++ T Consensus 18 R~~G~I~~~--kkGfGFI~~~---~~~~diF~H~s~~~~-~~~~l~~G~~V~F~v~~-~~~Gk~~A~~V~~~~~p~s 87 (88) T 2yty_A 18 RLLGYVATL--KDNFGFIETA---NHDKEIFFHYSEFSG-DVDSLELGDMVEYSLSK-GKGNKVSAEKVNKTSGPSS 87 (88) T ss_dssp CEEEEEEEE--CSSEEEEECS---SSSCEEEEETTTCCS-CTTTCCTTCEEEECCCC-CSCSCCBCCSCEECCCCCC T ss_pred EEEEEEEEE--ECEEEEEEEC---CCCCCEEEEHHHHCC-CCCCCCCCCEEEEEEEE-CCCCCEEEEEEECCCCCCC T ss_conf 778999999--5708389708---999319999699316-88856899999999998-9999988588761788989 No 13 >1x65_A UNR protein; cell-free protein synthesis, beta-barrel, translational regulation, RNA chaperone, RNA/DNA binding, QB fold, greek- KEY topology; NMR {Homo sapiens} Probab=99.69 E-value=2.2e-18 Score=122.30 Aligned_cols=69 Identities=23% Similarity=0.315 Sum_probs=58.8 Q ss_pred CCCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCC-CCCCCEEEEECCCCC Q ss_conf 8776277514688746588548877883799995000235884468998899999986999-711105999635788 Q gi|254780913|r 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN-GKYSAENLKLVPKSS 77 (78) Q Consensus 2 m~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~~~-gk~~A~~v~~i~~~~ 77 (78) +.+|+|+||+ +|||||+++ ++++|||||+|+|. +.+.|.+|++|+|++.+++++ +|++|+||++|+..+ T Consensus 8 r~~G~V~~~k--~GfGFI~~~---~~~~dvF~H~s~~~--~~~~l~~G~~VeF~v~~~~~g~~k~~A~~V~~l~~gs 77 (89) T 1x65_A 8 REMGVIAAMR--DGFGFIKCV---DRDVRMFFHFSEIL--DGNQLHIADEVEFTVVPDMLSAQRNHAIRIKKLPKGT 77 (89) T ss_dssp CEEEEEEECC--TTBCEEEES---SSSSCCCCBTTGGG--GSCCCCTTCCEEECCBCCSSSCCCCBCCSCEECCBTT T ss_pred CEEEEEEEEE--CCEEEEEEC---CCCCCEEEEHHHCC--CCCCCCCCCEEEEEEEECCCCCCCCEEEEEEECCCCC T ss_conf 5679999995--957378769---99966899934547--9998778999999999898989984788848989985 No 14 >2ytv_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens} Probab=99.68 E-value=1.8e-17 Score=117.31 Aligned_cols=71 Identities=27% Similarity=0.433 Sum_probs=60.2 Q ss_pred CCCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEECCCCCC Q ss_conf 87762775146887465885488778837999950002358844689988999999869997111059996357889 Q gi|254780913|r 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKSSN 78 (78) Q Consensus 2 m~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~~~gk~~A~~v~~i~~~~~ 78 (78) |.+|+|+|+. +|||||++. .++++|||||+|+|.. .+.|.+|++|+|++.+++++||++|++|+.|+..++ T Consensus 8 ~~~G~v~s~k--~gfGFI~~~--~~~g~diF~H~s~i~~--~~~L~~G~~V~F~v~~~~rggk~~A~~V~~l~~p~s 78 (79) T 2ytv_A 8 LRRATVECVK--DQFGFINYE--VGDSKKLFFHVKEVQD--GIELQAGDEVEFSVILNQRTGKCSACNVWRVSGPSS 78 (79) T ss_dssp BCCEEEEECC--SSEEEESCC--CSSSSSEEEETTTCCS--SCCCCTTCEEECBCEECSSSCCEECCSCEECSCCCC T ss_pred CEEEEEEEEC--CCEEEEEEC--CCCCCEEEEEHHHCCC--CCCCCCCCEEEEEEEECCCCCEEEEEEEEECCCCCC T ss_conf 0789998945--971177706--8899669999788589--875799999999999899899158788787788999 No 15 >2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli K12} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A Probab=96.91 E-value=0.0018 Score=39.12 Aligned_cols=61 Identities=21% Similarity=0.350 Sum_probs=43.7 Q ss_pred CCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEECCCC Q ss_conf 77627751468874658854887788379999500023588446899889999998699971110599963578 Q gi|254780913|r 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKS 76 (78) Q Consensus 3 ~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~~~gk~~A~~v~~i~~~ 76 (78) .+|+|+- ..|||||+.+| +++|||+.-+.+. ..-.|++|...+.. ++++..+.-+.++... T Consensus 22 ~~G~~~~--~~kgfgFv~~d----~~~di~I~~~~l~-----~A~~GD~V~v~i~~--~~~r~~g~v~~il~r~ 82 (644) T 2id0_A 22 AEGVVKA--TEKGFGFLEVD----AQKSYFIPPPQMK-----KVMHGDRIIAVIHS--EKERESAEPEELVEPF 82 (644) T ss_dssp EEEEEEC--CSSSCEEEECS----SSCEEEECHHHHT-----TSCTTCEEEEEEEC--CSSSCEEEEEEEEECS T ss_pred EEEEEEE--ECCCEEEEEEC----CCCCEEECHHHHC-----CCCCCCEEEEEEEC--CCCCCEEEEEEEEEEC T ss_conf 9999999--68950899867----9888899989981-----48899999999965--7999707999999978 No 16 >1a62_A RHO; transcription termination, termination, RNA binding domain, transcription regulation, OB fold, F1-ATPase; 1.55A {Escherichia coli BL21} SCOP: a.140.3.1 b.40.4.5 PDB: 1a63_A 2a8v_A 1a8v_A Probab=94.11 E-value=0.045 Score=31.29 Aligned_cols=65 Identities=18% Similarity=0.374 Sum_probs=41.8 Q ss_pred CCEEEEEECCCCEEEEEE--CCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCC-EEEEEC Q ss_conf 762775146887465885--4887788379999500023588446899889999998699971110-599963 Q gi|254780913|r 4 RGSIKWYNPDKGYGFITP--EGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSA-ENLKLV 73 (78) Q Consensus 4 ~G~VKwfn~~kGfGFI~~--d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~~~gk~~A-~~v~~i 73 (78) .|++.-. ..||||+.. .+...+..||||..|.|+..+ |++|+.|+=.+..-..+-|+-| ..|.-+ T Consensus 52 eG~Lei~--~dg~GflR~~~~~y~~~~~DiyVs~sqirrf~---Lr~Gd~v~G~~r~p~~~er~~al~~v~~v 119 (130) T 1a62_A 52 DGVLEIL--QDGFGFLRSADSSYLAGPDDIYVSPSQIRRFN---LRTGDTISGKIRPPKEGERYFALLKVNEV 119 (130) T ss_dssp EEEEEEC--TTSCEEEECGGGTTCCCTTCEEECHHHHHHTT---CCTTCEEEEEEECCCTTCCSEEEEEEEEE T ss_pred EEEEEEC--CCCCCEEECCCCCCCCCCCCCCCCHHHHHHHC---CCCCCEEEEEEECCCCCCCCCCCEEEHHH T ss_conf 7788861--78743453576577998344104999999848---97444567775289888775100451341 No 17 >2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii} Probab=93.18 E-value=0.16 Score=28.20 Aligned_cols=65 Identities=17% Similarity=0.211 Sum_probs=45.4 Q ss_pred CCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEECCC Q ss_conf 7762775146887465885488778837999950002358844689988999999869997111059996357 Q gi|254780913|r 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 (78) Q Consensus 3 ~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~~~gk~~A~~v~~i~~ 75 (78) .+|+|+-..+ ||....- +++-+-|+|.|.+...-.+.++.||.|.+.+..-++. ..-.+++++|- T Consensus 9 v~G~V~~i~~---~G~fV~l---~~~i~Glv~~sels~~~~~~~~~Gd~v~vkV~~vd~~--~~rI~Ls~~~l 73 (80) T 2k52_A 9 YKGVVTRIEK---YGAFINL---NEQVRGLLRPRDMISLRLENLNVGDEIIVQAIDVRPE--KREIDFKYIPL 73 (80) T ss_dssp EEEEEEEEET---TEEEEEE---ETTEEEEECGGGCSSCCGGGCCTTCEEEEEEEEEETT--TTEEEEEECSC T ss_pred EEEEEEEEEC---CEEEEEC---CCCEEEEEEHHHHCCCCCCCCCCCCCEEEEEEEEECC--CCEEEEEEEEE T ss_conf 9999999967---5799992---9998999997993885121688999899999999898--89997997730 No 18 >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold, motor, ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A Probab=93.10 E-value=0.062 Score=30.53 Aligned_cols=58 Identities=19% Similarity=0.376 Sum_probs=39.4 Q ss_pred CCCEEEEEE--CCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCC-EEEEEC Q ss_conf 887465885--4887788379999500023588446899889999998699971110-599963 Q gi|254780913|r 13 DKGYGFITP--EGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSA-ENLKLV 73 (78) Q Consensus 13 ~kGfGFI~~--d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~~~gk~~A-~~v~~i 73 (78) ..||||+.. .+...+..||||..+-|+..+ |+.|+.|.-.+..-..+.++-| ..|..+ T Consensus 62 ~dg~Gflr~~~~~y~~~~~DiyVs~~~ir~~~---Lr~Gd~v~G~~r~~~~~e~~~~l~~V~~v 122 (422) T 3ice_A 62 QDGFGFLRSADSSYLAGPDDIYVSPSQIRRFN---LRTGDTISGKIRPPKEGERYFALLKVNEV 122 (422) T ss_dssp TTSCEEEECGGGTTCCCTTCEEBCHHHHHHHT---CCTTCEEEEEEECCCSSCCSEEEEEEEEE T ss_pred CCCCEEEECCCCCCCCCCCCEEECHHHHHHHC---CCCCCEEEEEEECCCCCCCCCCCEEEHHC T ss_conf 89967852775588999988538989998808---88899899987478777777631342320 No 19 >3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima} Probab=92.95 E-value=0.099 Score=29.40 Aligned_cols=50 Identities=24% Similarity=0.492 Sum_probs=35.7 Q ss_pred CCCEEEEEE-C-CCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCC Q ss_conf 887465885-4-8877883799995000235884468998899999986999711 Q gi|254780913|r 13 DKGYGFITP-E-GSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65 (78) Q Consensus 13 ~kGfGFI~~-d-~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~~~gk~ 65 (78) ..||||+.. + +...+..||||..|.|+..+ |+.|+.|+..+..-..+-|+ T Consensus 66 ~dg~GflR~~~~~y~~~~~Diyvs~~qir~f~---Lr~Gd~v~g~~r~p~~~e~~ 117 (427) T 3l0o_A 66 PEGFGFLRRIEDNLLPSNDDIYISPSQIRKFN---LNTGDIISGVIRKPKEGEKY 117 (427) T ss_dssp TTSCEEEECGGGTTCCCSSCEEECHHHHHHTT---CCTTCEEEEEEECCCSSSCS T ss_pred CCCCEEEECCCCCCCCCCCCEEECHHHHHHHC---CCCCCEEEEEEECCCCCCCC T ss_conf 89867986686688899878034889984717---88899899988557778775 No 20 >2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Probab=89.03 E-value=0.29 Score=26.77 Aligned_cols=66 Identities=20% Similarity=0.217 Sum_probs=41.0 Q ss_pred CCCEEEEEECCCCEEEEE-ECCCCCCCCEEEEEEEECCCCC-----CCCCCCCCEEEEEEEECCCCCCCCCEEEEECC Q ss_conf 776277514688746588-5488778837999950002358-----84468998899999986999711105999635 Q gi|254780913|r 3 HRGSIKWYNPDKGYGFIT-PEGSTESGDDVFLHRSAVASAG-----LFNLTEGQLVTYDYVQNDANGKYSAENLKLVP 74 (78) Q Consensus 3 ~~G~VKwfn~~kGfGFI~-~d~~~d~g~DvFvH~s~i~~~g-----~~~l~~G~~V~F~i~~~~~~gk~~A~~v~~i~ 74 (78) .+|+|+-.. -||..+ .++ ...+-|-|+|+|.|.... -..++.||.|.+.+..-++ .| ....++.+. T Consensus 16 ~~g~V~~V~---~fG~FV~l~~-~~~~~~GlvhiSels~~~~~~~~~~~~~~Gd~v~~kVl~id~-~k-i~LSlK~~~ 87 (103) T 2eqs_A 16 YNGKVTSIM---QFGCFVQLEG-LRKRWEGLVHISELRREGRVANVADVVSKGQRVKVKVLSFTG-TK-TSLSMKDVD 87 (103) T ss_dssp EEEEEEEEC---SSCEEEEECS-SSSCCEEEECGGGTSSSSCCCCHHHHCCTTCEEEEEEEEEET-TE-EEEESTTBC T ss_pred EEEEEEEEE---CCEEEEEECC-CCCCCCCCCCHHHHCCCCCCCCHHHEECCCCEEEEEEEEEEC-CE-EEEEEEECC T ss_conf 999999994---6578999468-656731311365732444446874631699999999999858-85-188637768 No 21 >2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli} Probab=82.02 E-value=2.5 Score=21.58 Aligned_cols=56 Identities=18% Similarity=0.232 Sum_probs=36.8 Q ss_pred CCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCC-----CCCCCCCCCEEEEEEEECC-CCCC Q ss_conf 776277514688746588548877883799995000235-----8844689988999999869-9971 Q gi|254780913|r 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA-----GLFNLTEGQLVTYDYVQND-ANGK 64 (78) Q Consensus 3 ~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~-----g~~~l~~G~~V~F~i~~~~-~~gk 64 (78) .+|+|+-.. -||.+.. ..++-+-|+|.|.+... ..+.+..||.|++.+.+-+ ..++ T Consensus 34 v~G~V~~I~---d~G~fV~---l~~~i~Gli~~sels~~~~~~~~~~~~~vG~~v~vkVi~vD~~~~k 95 (115) T 2khi_A 34 LTGRVTNLT---DYGCFVE---IEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRR 95 (115) T ss_dssp EEEEEEEEE---TTEEEEE---CSTTCEEEEETTSSSCSSTTCSSTTTCCTTCEEEEEEEEEETTTTE T ss_pred EEEEEEEEE---CCEEEEE---ECCCCEEEEEEEEECCCCEECCHHHEECCCCEEEEEEEEEECCCCE T ss_conf 999999996---8669999---7999789999863035320136312206998999999999899999 No 22 >1kl9_A Eukaryotic translation initiation factor 2 subunit 1; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 Probab=79.95 E-value=1.9 Score=22.29 Aligned_cols=57 Identities=7% Similarity=-0.020 Sum_probs=37.9 Q ss_pred CCCEEEEEECCCCEE-EEEECCCCCCCCEEEEEEEECCCCC----CCCCCCCCEEEEEEEECCCCCC Q ss_conf 776277514688746-5885488778837999950002358----8446899889999998699971 Q gi|254780913|r 3 HRGSIKWYNPDKGYG-FITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQNDANGK 64 (78) Q Consensus 3 ~~G~VKwfn~~kGfG-FI~~d~~~d~g~DvFvH~s~i~~~g----~~~l~~G~~V~F~i~~~~~~gk 64 (78) ..|+|+-.. -|| |+..+. -+|-+-|+|+|.|...- ...++.||.|.+.+..-++..+ T Consensus 19 v~g~V~~i~---~~G~fV~l~e--y~gi~Glih~seis~~~i~~~~~~~kvG~~v~~kVl~vd~~~~ 80 (182) T 1kl9_A 19 VMVNVRSIA---EMGAYVSLLE--YNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDKEKG 80 (182) T ss_dssp EEEEEEEEC---SSEEEEEETT--TTTEEEEEEGGGC------------CTTCEEEEEEEEEETTTT T ss_pred EEEEEEEEE---CCEEEEEECC--CCCCEEEEEHHHHCCCCCCCHHHCCCCCCEEEEEEEEEECCCC T ss_conf 999999996---6679999657--7993799878994777556830137899999999987607788 No 23 >3go5_A Multidomain protein with S1 RNA-binding domains; joint center for structural genomics, protein structure initiative, PSI-2; HET: MSE; 1.40A {Streptococcus pneumoniae TIGR4} Probab=79.79 E-value=3.4 Score=20.84 Aligned_cols=28 Identities=4% Similarity=0.061 Sum_probs=9.6 Q ss_pred CEEEEEEEECCCCCCCCCCCCCEEEEEE Q ss_conf 3799995000235884468998899999 Q gi|254780913|r 29 DDVFLHRSAVASAGLFNLTEGQLVTYDY 56 (78) Q Consensus 29 ~DvFvH~s~i~~~g~~~l~~G~~V~F~i 56 (78) .|+|+|.+.+.......+.+|+++...+ T Consensus 95 kdl~vp~~~~~~~~~~~~~~G~~v~V~l 122 (285) T 3go5_A 95 KEIVVSLDILPELKELWPKKGDQLYIRL 122 (285) T ss_dssp CCEEEEGGGSCSSGGGSCCTTCEEEEEE T ss_pred CCCCCCHHHCCCCCCCCCCCCEEEEEEE T ss_conf 4533330326733203788984999999 No 24 >1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5 Probab=72.94 E-value=4.6 Score=20.06 Aligned_cols=59 Identities=20% Similarity=0.260 Sum_probs=39.6 Q ss_pred CCCCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCC-----CCCCCCCCCEEEEEEEECCCCCC Q ss_conf 98776277514688746588548877883799995000235-----88446899889999998699971 Q gi|254780913|r 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA-----GLFNLTEGQLVTYDYVQNDANGK 64 (78) Q Consensus 1 mm~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~-----g~~~l~~G~~V~F~i~~~~~~gk 64 (78) |..+|+|+--. -||++..-+ ..+-+-|+|.+.+... ....+..||.|.+.+..-+...+ T Consensus 23 ~iv~G~V~~i~---~~G~~V~~g--~~~~~G~l~~~e~~~~~~~~~~~~~~~vGq~v~~~V~~vd~~~~ 86 (119) T 1wi5_A 23 MLLTGTVSSLE---DHGYLVDIG--VDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVKGNGG 86 (119) T ss_dssp CEEEEEEEEEC---SSEEEEECC--CSSCEEEEEHHHHHHHHHHHSSSCCCCTTCEEEEEEEECCTTSC T ss_pred CEEEEEEEEEC---CCEEEEEEC--CCCCCCEECHHHHHCCCCCCCCCCCCCCCCEEEEEEEEEECCCC T ss_conf 89999999833---987999806--75432301255641234445743232589999999999989999 No 25 >2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis} Probab=72.04 E-value=2.8 Score=21.27 Aligned_cols=56 Identities=21% Similarity=0.283 Sum_probs=36.6 Q ss_pred CCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCC----CCCCCCCEEEEEEEECCC-CCC Q ss_conf 77627751468874658854887788379999500023588----446899889999998699-971 Q gi|254780913|r 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL----FNLTEGQLVTYDYVQNDA-NGK 64 (78) Q Consensus 3 ~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~----~~l~~G~~V~F~i~~~~~-~gk 64 (78) .+|+|.-..+ ||.++.- .++-+-|+|+|.|...-. ..+..||.|.+.+..-+. .++ T Consensus 11 v~g~V~~v~~---~G~fV~l---~~g~~Glv~~sels~~~~~~~~~~~~~G~~v~v~V~~id~~~~~ 71 (130) T 2k4k_A 11 YTGKVTGLQA---YGAFVAL---DEETQGLVHISEVTHGFVKDINEHLSVGDEVQVKVLAVDEEKGK 71 (130) T ss_dssp EEEEEEEEET---TEEEEEE---ETTEEEEEEGGGTSSSCCSCGGGTCCTTCEEEEEEEEEETTTTE T ss_pred EEEEEEEEEC---CEEEEEE---CCCCEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEECCCCE T ss_conf 9999999978---8799998---99978998810202212224453568999999999999689998 No 26 >3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A Probab=65.40 E-value=7.1 Score=19.03 Aligned_cols=55 Identities=20% Similarity=0.266 Sum_probs=37.9 Q ss_pred CCCCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCC----CCCCCCCEEEEEEEECCC Q ss_conf 9877627751468874658854887788379999500023588----446899889999998699 Q gi|254780913|r 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL----FNLTEGQLVTYDYVQNDA 61 (78) Q Consensus 1 mm~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~----~~l~~G~~V~F~i~~~~~ 61 (78) |..+|+|.--- -||-.+. ..-+.|-++|+|.+...-. ..+..||.|...|..-+. T Consensus 656 ~~~~g~V~nv~---~fGafVd---ig~~~dGlihis~lsd~~v~~p~~~v~~G~~v~v~V~~iD~ 714 (785) T 3bzc_A 656 MVLEGVVTNVT---NFGAFVD---IGVHQDGLVHISALSEKFVKDPYEVVKAGDIVKVKVMEVDI 714 (785) T ss_dssp CBCCCEEEEEE---TTEEEEE---CSSSSEEEEETTTSCSSCCSCHHHHCCTTCCCCCBEEEEET T ss_pred CEEEEEEEEEC---CCCEEEE---ECCCCCEEEEHHHCCCCCCCCHHHCCCCCCEEEEEEEEEEC T ss_conf 88999999864---6856998---05896115669854787899988848999989999999986 No 27 >2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha subunit; transferase, protein biosynthesis, protein synthesis/transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A Probab=65.25 E-value=6 Score=19.44 Aligned_cols=55 Identities=7% Similarity=-0.092 Sum_probs=36.5 Q ss_pred CCCEEEEEECCCCEEEE-EECCCCCCCCEEEEEEEECCCCC----CCCCCCCCEEEEEEEECCCC Q ss_conf 77627751468874658-85488778837999950002358----84468998899999986999 Q gi|254780913|r 3 HRGSIKWYNPDKGYGFI-TPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQNDAN 62 (78) Q Consensus 3 ~~G~VKwfn~~kGfGFI-~~d~~~d~g~DvFvH~s~i~~~g----~~~l~~G~~V~F~i~~~~~~ 62 (78) .+|+|+--.+ ||.. ..+. -+|-+-|+|.|.|...- ...+..||.|.+.+..-+.. T Consensus 19 v~g~V~~i~~---~G~fV~l~~--~~gieg~v~~sels~~~v~~~~~~~~~G~~v~~kVi~vd~~ 78 (175) T 2a19_A 19 VMVNVQQIAE---MGAYVKLLE--YDNIEGMILLSELSRRRIRSIQKLIRVGKNDVAVVLRVDKE 78 (175) T ss_dssp EEEEEEEEET---TEEEEEETT--TTTCEEEEECC--------CCCCCCCTTSEEEEEEEEEETT T ss_pred EEEEEEEEEC---CEEEEEECC--CCCEEEEEEHHHHCCCCCCCHHHEEECCCEEEEEEEEECCC T ss_conf 9999999988---879999778--79849999868947565557424452798899999675166 No 28 >2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Probab=64.28 E-value=8.1 Score=18.71 Aligned_cols=50 Identities=18% Similarity=0.292 Sum_probs=33.6 Q ss_pred CCEEEEEECCCCEEEEE-ECCCCCCCCEEEEEEEECCCCCC----CCCCCCCEEEEEEEEC Q ss_conf 76277514688746588-54887788379999500023588----4468998899999986 Q gi|254780913|r 4 RGSIKWYNPDKGYGFIT-PEGSTESGDDVFLHRSAVASAGL----FNLTEGQLVTYDYVQN 59 (78) Q Consensus 4 ~G~VKwfn~~kGfGFI~-~d~~~d~g~DvFvH~s~i~~~g~----~~l~~G~~V~F~i~~~ 59 (78) +|+|+---+ ||... .++ .+.|-|+|+|.|...-. ..+..||.|...+..- T Consensus 27 ~G~V~~V~~---~G~FV~l~g---~~~dGlvhisels~~~v~~~~~~~~vGd~V~vkVi~i 81 (119) T 2cqo_A 27 QGEVAMVTD---YGAFIKIPG---CRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGR 81 (119) T ss_dssp EEEEEEEET---TEEEEECTT---CSSCEEEEHHHHCSSCCSCHHHHCCTTCEEEEEEEEE T ss_pred EEEEEEEEC---CEEEEEECC---CCCEEEEEHHHHCCCCCCCHHHEECCCCEEEEEEEEE T ss_conf 999999965---288999789---8720898666804666679888038999999999999 No 29 >2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli} Probab=63.79 E-value=6.2 Score=19.37 Aligned_cols=56 Identities=16% Similarity=0.285 Sum_probs=36.2 Q ss_pred CCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCC----CCCCCCCEEEEEEEECCCCCC Q ss_conf 77627751468874658854887788379999500023588----446899889999998699971 Q gi|254780913|r 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL----FNLTEGQLVTYDYVQNDANGK 64 (78) Q Consensus 3 ~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~----~~l~~G~~V~F~i~~~~~~gk 64 (78) .+|+|.-.++. | -||... ++-+-|+|++.+..... ..+..||.|.+.+..-+...+ T Consensus 35 v~G~V~~I~~~-G-v~V~l~----~~i~G~i~~~els~~~~~~~~~~~~vG~~v~vkVi~id~~~~ 94 (109) T 2khj_A 35 VTGKVTAVDAK-G-ATVELA----DGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNR 94 (109) T ss_dssp EEEEEEEECSS-C-EEEECS----TTCBCCBCTTCCCSSSSSSGGGSCCTTCEEEEEEEEEETTTT T ss_pred EEEEEEEEECC-E-EEEEEC----CCCEEEEEHHHCCCCCCCCCCCEECCCCEEEEEEEEEECCCC T ss_conf 99999999897-7-999979----997899868992755312602076899999999999989999 No 30 >3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A Probab=59.82 E-value=8.7 Score=18.54 Aligned_cols=55 Identities=29% Similarity=0.369 Sum_probs=37.0 Q ss_pred CCCEEEEEECCCCEEEEE-ECCCCCCCCEEEEEEEECCCCCC----CCCCCCCEEEEEEEECCCC Q ss_conf 776277514688746588-54887788379999500023588----4468998899999986999 Q gi|254780913|r 3 HRGSIKWYNPDKGYGFIT-PEGSTESGDDVFLHRSAVASAGL----FNLTEGQLVTYDYVQNDAN 62 (78) Q Consensus 3 ~~G~VKwfn~~kGfGFI~-~d~~~d~g~DvFvH~s~i~~~g~----~~l~~G~~V~F~i~~~~~~ 62 (78) ..|+|+--.+ ||..+ .+. -+|-+-|+|+|.|...-. ..+..||.|.+.+..-++. T Consensus 15 V~g~V~~I~~---~GafV~l~e--~~gieGli~~Seis~~~v~~~~~~~k~Gq~v~~kVl~vd~~ 74 (275) T 3aev_A 15 VVATVKRIHN---YGAFLELDE--YPGKEAFMHISEVASTWVRNIRDYLKEGQKVVAKVIRVDPR 74 (275) T ss_dssp EEEEEEEEET---TEEEEEETT--STTCEEEEEGGGSCSSCCSCGGGTCCTTCEEEEEEEEEETT T ss_pred EEEEEEEEEC---CEEEEEECC--CCCCEEEEEHHHCCCCCCCCHHHHCCCCCEEEEEEEECCCC T ss_conf 9999999972---418999736--79947998989878742049888378999899999742577 No 31 >2vnu_D Exosome complex exonuclease RRP44; rRNA processing, RNA degradation, cytoplasm, RNA-binding, RNA processing, DIS3P, nucleus, hydrolase; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 Probab=58.29 E-value=10 Score=18.10 Aligned_cols=45 Identities=13% Similarity=0.273 Sum_probs=27.6 Q ss_pred CCEEEEEECCCCE--EEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEE Q ss_conf 7627751468874--65885488778837999950002358844689988999999 Q gi|254780913|r 4 RGSIKWYNPDKGY--GFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 (78) Q Consensus 4 ~G~VKwfn~~kGf--GFI~~d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~ 57 (78) +|++.- ..|+| |||..+ +...|||+.-..-.+ +.+ .|+.|..++. T Consensus 34 ~G~l~v--~~~~~~~a~V~~~---~~~~di~I~g~~~~N---rA~-~GD~V~Vell 80 (760) T 2vnu_D 34 QGNIQI--SEYNFLEGSVSLP---RFSKPVLIVGQKNLN---RAF-NGDQVIVELL 80 (760) T ss_dssp EEEEEE--CSSBTTEEEECCS---SSSSCEEEESHHHHT---TCC-TTCEEEEEEC T ss_pred EEEEEE--ECCCCCEEEEECC---CCCCCEEEECHHCCC---CCC-CCCEEEEEEC T ss_conf 999999--3699940799768---998788984701158---885-8999999985 No 32 >2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, periplasm, metal-binding, metal transport, copper tolerance, copper transport; 1.70A {Escherichia coli} PDB: 2vb3_X Probab=51.24 E-value=14 Score=17.43 Aligned_cols=68 Identities=12% Similarity=0.179 Sum_probs=38.1 Q ss_pred CCEEEEEECCCCEEEEEECCCC-CCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEC Q ss_conf 7627751468874658854887-788379999500023588446899889999998699971110599963 Q gi|254780913|r 4 RGSIKWYNPDKGYGFITPEGST-ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73 (78) Q Consensus 4 ~G~VKwfn~~kGfGFI~~d~~~-d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~~~gk~~A~~v~~i 73 (78) +|+|+-.|.+.+-=-|.-+--. -+-+--=.-+..-...-+..|++||+|.|.+.+. +|.+.-.+|++. T Consensus 19 ~G~V~~vd~~~~~iti~H~pIp~l~wPaMTM~F~v~~~~~l~~l~~Gd~V~f~~~~~--~~~~~I~~i~~~ 87 (88) T 2vb2_X 19 TGVVKGIDLESKKITIHHDPIAAVNWPEMTMRFTITPQTKMSEIKTGDKVAFNFVQQ--GNLSLLQDIKVS 87 (88) T ss_dssp EEEEEEEETTTTEEEEEECCBGGGTBCSEEEEEECCTTCEECCCCTTCEEEEEEEEE--TTEEEEEEEEEC T ss_pred EEEEEEECCCCCEEEEECCCCCCCCCCCEEEEEECCCHHHHHCCCCCCEEEEEEEEC--CCEEEEEEEEEC T ss_conf 899999837899899967774617998618887878954763499999999999981--991999999977 No 33 >1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A Probab=48.90 E-value=15 Score=17.22 Aligned_cols=45 Identities=22% Similarity=0.459 Sum_probs=29.4 Q ss_pred CCEEEEE-ECCCCEEEEEECCCCCCCCEEEEEEE----ECCCCCCC-CCCCCCEEE Q ss_conf 7627751-46887465885488778837999950----00235884-468998899 Q gi|254780913|r 4 RGSIKWY-NPDKGYGFITPEGSTESGDDVFLHRS----AVASAGLF-NLTEGQLVT 53 (78) Q Consensus 4 ~G~VKwf-n~~kGfGFI~~d~~~d~g~DvFvH~s----~i~~~g~~-~l~~G~~V~ 53 (78) .|+|.+- +..--||+-+ ++|-++++|+- .|...++. .+++||+|. T Consensus 57 ~G~V~~v~~T~HAigi~t-----~~G~evLiHiGiDTV~L~G~gF~~~V~~Gd~V~ 107 (162) T 1ax3_A 57 RGKILNVFPTKHAIGLQS-----DGGREILIHFGIDTVSLKGEGFTSFVSEGDRVE 107 (162) T ss_dssp CEEEEECCSSSSEEEEES-----SSSCEEEEECSSSTTTTTTTTEEESCCCCSEEC T ss_pred CEEEEEECCCCCEEEEEC-----CCCCEEEEEECCCHHHCCCCCEEEEECCCCEEC T ss_conf 969999856896999997-----999799999864543218983189982699998 No 34 >1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1 Probab=47.64 E-value=14 Score=17.31 Aligned_cols=54 Identities=9% Similarity=0.014 Sum_probs=35.6 Q ss_pred CCEEEEEECCCCEEEE-EECCCCCCCCEEEEEEEECCCCC----CCCCCCCCEEEEEEEECCCC Q ss_conf 7627751468874658-85488778837999950002358----84468998899999986999 Q gi|254780913|r 4 RGSIKWYNPDKGYGFI-TPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQNDAN 62 (78) Q Consensus 4 ~G~VKwfn~~kGfGFI-~~d~~~d~g~DvFvH~s~i~~~g----~~~l~~G~~V~F~i~~~~~~ 62 (78) .|+|+--.+ ||.. ..+. -+|-+-|+|+|.|.... ...++.||.|.+.+..-+.. T Consensus 18 ~g~V~~i~~---~GafV~L~e--y~gieGli~isEls~~~i~~~~~~~kvGq~v~vkVl~vd~e 76 (308) T 1q8k_A 18 MVNVRSIQE---MGAYVSLLE--YNNIEGMIHLSELSRRRIRSINKLIRIGRNECVKVIRVDKE 76 (308) T ss_dssp EEEEEEEET---TEEEEESCT--TTSCCEEECGGGTSCSSCSCCTTTCSSSCEEEEEEEEEETT T ss_pred EEEEEEEEC---CEEEEEECC--CCCCEEEEEHHHCCCCCCCCHHHHCCCCCEEEEEEEEECCC T ss_conf 999999973---559999717--99908998989878754489899167999999999675077 No 35 >2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metalloprotein, metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X Probab=47.41 E-value=16 Score=17.09 Aligned_cols=67 Identities=12% Similarity=0.196 Sum_probs=34.8 Q ss_pred CCEEEEEECCCCEEEEEECCCCC-CCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEE Q ss_conf 76277514688746588548877-8837999950002358844689988999999869997111059996 Q gi|254780913|r 4 RGSIKWYNPDKGYGFITPEGSTE-SGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKL 72 (78) Q Consensus 4 ~G~VKwfn~~kGfGFI~~d~~~d-~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~~~gk~~A~~v~~ 72 (78) +|+|+-.|.+.+-=-|.-+.-.+ +-+--=..+..-...-+..|++|++|.|++... ++.+...+|+. T Consensus 11 ~G~V~~vd~~~~~iti~H~~Ip~l~wPaMTM~F~v~~~~~l~~l~~Gd~V~F~~~~~--~~~~~i~~i~~ 78 (80) T 2qcp_X 11 TGVVKGIDLESKKITIHHDPIAAVNWPEMTMRFTITPQTKMSEIKTGDKVAFNFVQQ--GNLSLLQDIKV 78 (80) T ss_dssp EEEEEEEETTTTEEEEEECCBGGGTBCSEEEEEECCTTCEECCCCTTCEEEEEEEEE--TTEEEEEEEEE T ss_pred EEEEEEECCCCCEEEEECCCCCCCCCCCEEEEEECCCHHHHHCCCCCCEEEEEEEEC--CCEEEEEEEEE T ss_conf 899999857899899977771307998648886858967873699999999999980--99399999997 No 36 >3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A Probab=46.53 E-value=3.4 Score=20.83 Aligned_cols=59 Identities=20% Similarity=0.291 Sum_probs=39.0 Q ss_pred CCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCC----CCCCCCCEEEEEEEECCCCCCCCC Q ss_conf 77627751468874658854887788379999500023588----446899889999998699971110 Q gi|254780913|r 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL----FNLTEGQLVTYDYVQNDANGKYSA 67 (78) Q Consensus 3 ~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~----~~l~~G~~V~F~i~~~~~~gk~~A 67 (78) .+|+|+-- +-||-.+-- -.|.|-++|+|.|..... ..|++||.|...+..-+++||..- T Consensus 631 y~g~V~~i---~~fGafve~---~pg~~gL~HiSel~~~rv~~~~dv~~~Gd~i~Vk~~~~d~~G~i~l 693 (723) T 3cdi_A 631 YTGKVTRI---VDFGAFVAI---GGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRL 693 (723) T ss_dssp --------------------------------------------------------------------- T ss_pred EEEEEEEE---EECEEEEEE---CCCCCEEEEEECCCCCCCCCHHHHCCCCCEEEEEEEEECCCCCEEE T ss_conf 99999999---954299996---6999447880104676767852321789899999997989998887 No 37 >3n7x_A Capsid protein; icosahedral virus capsid, virus-like particle, capsid protei barrel, parvovirus; 2.50A {Infectious hypodermal and hematopoietinecrosis virus} Probab=42.68 E-value=16 Score=17.04 Aligned_cols=53 Identities=25% Similarity=0.372 Sum_probs=35.3 Q ss_pred CCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEE Q ss_conf 76277514688746588548877883799995000235884468998899999 Q gi|254780913|r 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 (78) Q Consensus 4 ~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i 56 (78) -|.|||=.+.-|-=.--.|...++=..||..+|-|+.-.-..|+-|.+|.-+. T Consensus 237 ggqikwdkpslgnlvypadhhtndwqqifmrmspikgpngdelklgcrvqadf 289 (329) T 3n7x_A 237 GGQIKWDKPSLGNLVYPADHHTNDWQQIFMRMSPIKGPNGDELKLGCRVQADF 289 (329) T ss_dssp BTTBCCBCCTTSCCCCCCSSCCCCCCCEEEEECCCBCTTSCBCCEEEEEEEEE T ss_pred CCEEECCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEECCCEEEEEE T ss_conf 75011268664574133435654199988433876699955000043664015 No 38 >3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B Probab=41.14 E-value=11 Score=18.02 Aligned_cols=55 Identities=24% Similarity=0.277 Sum_probs=36.0 Q ss_pred CCCEEEEEECCCCEE-EEEECCCCCCCCEEEEEEEECCCCCC----CCCCCCCEEEEEEEECCCC Q ss_conf 776277514688746-58854887788379999500023588----4468998899999986999 Q gi|254780913|r 3 HRGSIKWYNPDKGYG-FITPEGSTESGDDVFLHRSAVASAGL----FNLTEGQLVTYDYVQNDAN 62 (78) Q Consensus 3 ~~G~VKwfn~~kGfG-FI~~d~~~d~g~DvFvH~s~i~~~g~----~~l~~G~~V~F~i~~~~~~ 62 (78) ..|+|+--. -|| |+..+. -++-+-|+|+|.|...-. ..++.||.|.+.+..-++. T Consensus 15 v~g~V~~i~---~~G~fV~l~e--y~~~eG~i~~sEis~~~i~~~~~~~~vG~~v~~kVi~vd~~ 74 (266) T 3cw2_C 15 LIATVKQVF---DYGSYVSLDE--YGGLQAFLPWSEVSSKWVKNIRDVLKENRKVIVKVIRVDRR 74 (266) T ss_dssp EEEEEEECC---SSSBEEEETT--TTSEECBBCGGGSSCSSCCCHHHHSCTTCEEEEEECCCCSS T ss_pred EEEEEEEEE---CCEEEEEECC--CCCEEEEEEHHHCCCCCCCCHHHHCCCCCEEEEEEEEECCC T ss_conf 999999998---3359999757--79908998989968864479889288999999999665276 No 39 >2kct_A Cytochrome C-type biogenesis protein CCME; solution structure, heme chaperone, cytochrome C biogenesis, OB-fold domain, NESG, PSI-2; NMR {Desulfovibrio vulgaris str} Probab=40.53 E-value=20 Score=16.47 Aligned_cols=68 Identities=12% Similarity=0.161 Sum_probs=44.2 Q ss_pred CCCCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEE Q ss_conf 987762775146887465885488778837999950002358844689988999999869997111059996 Q gi|254780913|r 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKL 72 (78) Q Consensus 1 mm~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~~~gk~~A~~v~~ 72 (78) |...|.|+|-+...+.=|...|. .+.+..+=|+++.+..+ ..++|+.|.-+=......|...|.+|-. T Consensus 16 ~V~~gSi~~~~~~~~~~F~itD~-~~~~~~i~V~Y~G~~Pd---lF~eg~~VVveG~~~~~~g~F~A~~ila 83 (94) T 2kct_A 16 TVAADGLTMLDGAPGVRFRLEDK-DNTSKTVWVLYKGAVPD---TFKPGVEVIIEGGLAPGEDTFKARTLMT 83 (94) T ss_dssp EECSTTCEECTTSSEEEEEEECS-SCTTCEEEEEEESCCCT---TCCTTCEEEEEEEECTTCSEEEEEEEEE T ss_pred EEECCCEEECCCCCEEEEEEEEC-CCCCEEEEEEECCCCCH---HHHCCCEEEEEEEEECCCCEEEEEEEEE T ss_conf 99689399889996889999976-68866999998887965---8738997999999978999899849994 No 40 >2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=38.24 E-value=13 Score=17.53 Aligned_cols=45 Identities=18% Similarity=0.204 Sum_probs=25.9 Q ss_pred CCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEE Q ss_conf 762775146887465885488778837999950002358844689988999999 Q gi|254780913|r 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 (78) Q Consensus 4 ~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~ 57 (78) -|.|+-....||||||+-+... ++ ..+|+... ..+ .|..|..... T Consensus 37 ~g~v~~~~~~~g~gFV~F~~~~----~a---~~al~~~~-~~~-~Gr~l~v~~a 81 (104) T 2dhx_A 37 GGPVLSWQRLGCGGVLTFREPA----DA---ERVLAQAD-HEL-HGAQLSLRPA 81 (104) T ss_dssp CCCEEEEEEETTEEEEEESSHH----HH---HHHHTCSC-CBS-SSSBCEEEEC T ss_pred CEEEEEEEEECCCEEEEEECHH----HH---HHHHHCCC-CCC-CCEEEEEEEC T ss_conf 2699997761885899992789----99---99985599-871-8708887455 No 41 >1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A Probab=37.42 E-value=3.5 Score=20.77 Aligned_cols=58 Identities=28% Similarity=0.272 Sum_probs=38.1 Q ss_pred CCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCC-------C-CCCCCCCCEEEEEEEECCCCCCCC Q ss_conf 776277514688746588548877883799995000235-------8-844689988999999869997111 Q gi|254780913|r 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA-------G-LFNLTEGQLVTYDYVQNDANGKYS 66 (78) Q Consensus 3 ~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~-------g-~~~l~~G~~V~F~i~~~~~~gk~~ 66 (78) .+|+|+-- +-||-.+-- -.|.|-++|+|.|... . ...|++||.|...+..-+++||.. T Consensus 671 y~g~V~~i---~~fGafve~---~pg~~GllHiSel~~~~~~~rv~~v~d~~~~Gd~i~Vk~~~id~~gki~ 736 (757) T 1e3p_A 671 ILGSVVKT---TTFGAFVSL---LPGKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEIDSRGKLS 736 (757) T ss_dssp --CBEEEC---C-CSCEECC---C---CCCCC-------------------CCSSCBCCCCCCCCCSSCC-- T ss_pred EEEEEEEE---EEEEEEEEE---CCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEE T ss_conf 99999999---853299996---7998268882404665555455771212078989999999788999788 No 42 >2fur_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.80A {Thermoplasma acidophilum} SCOP: b.45.1.1 Probab=36.86 E-value=22 Score=16.27 Aligned_cols=53 Identities=21% Similarity=0.325 Sum_probs=35.2 Q ss_pred CCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEEC Q ss_conf 76277514688746588548877883799995000235884468998899999986 Q gi|254780913|r 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 (78) Q Consensus 4 ~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~ 59 (78) .|++-..+ -|+=+|+|-.-.-.+.++++|-+. .......|..+.+|.|++... T Consensus 34 v~~La~~d--~g~PyvvPl~f~~~~~~lYfH~a~-~G~K~~~l~~np~V~~~v~~~ 86 (209) T 2fur_A 34 TCTVSFID--GGIPYAIPMMLASEGKTIYLHGSM-KSRIYGILKTGQLIAISLLEI 86 (209) T ss_dssp EEEEEEEE--TTEEEEEEEECEEETTEEEEEEET-TSHHHHHHHTTCCEEEEEEEE T ss_pred EEEEEEEE--CCEEEEEEEEEEEECCEEEEEECC-HHHHHHHHHCCCCEEEEEEEC T ss_conf 89999940--994599987999919989999755-068999986399569999822 No 43 >2hq9_A MLL6688 protein; NP_107146.1, hypothetical protein, structural genomics, joint center for structural genomics, JCSG; HET: FAD; 1.95A {Mesorhizobium loti} SCOP: b.45.1.1 Probab=36.83 E-value=21 Score=16.41 Aligned_cols=55 Identities=7% Similarity=0.094 Sum_probs=34.0 Q ss_pred CCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEE Q ss_conf 874658854887788379999500023588446899889999998699971110599 Q gi|254780913|r 14 KGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70 (78) Q Consensus 14 kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~~~gk~~A~~v 70 (78) .|+=+++|=.-.-.+..+++|-+ .....+.|..+-+|.|.+........++.+.+ T Consensus 29 dg~P~vvPv~f~~d~~~iy~~t~--~g~K~~~l~~np~V~~~v~~~~~~~~~~sV~v 83 (149) T 2hq9_A 29 DGQPYVVPLYYAYSDAHLYAFSM--PGKKIEWMRANPRVSVQVDEHGQGRGWKSVVV 83 (149) T ss_dssp TTEEEEEEEECEEETTEEEEEEC--SSHHHHHHHHCCEEEEEEEEECSTTCEEEEEE T ss_pred CCCEEEEEEEEEEECCEEEEEEC--CCHHHHHHHCCCCEEEEEEECCCCCCEEEEEE T ss_conf 99189999999998999999978--86689996569949999975589861589999 No 44 >2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Probab=28.57 E-value=26 Score=15.87 Aligned_cols=45 Identities=22% Similarity=0.367 Sum_probs=25.5 Q ss_pred CCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEE Q ss_conf 76277514688746588548877883799995000235884468998899999 Q gi|254780913|r 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 (78) Q Consensus 4 ~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i 56 (78) -|.|+...-.|+||||+-.... + -..||....-..| .|..+..+. T Consensus 33 ~G~i~~v~~~~~~afV~f~~~~----~---A~~Ai~~l~g~~l-~g~~i~V~~ 77 (90) T 2dnp_A 33 RGRVIECDVVKDYAFVHMEKEA----D---AKAAIAQLNGKEV-KGKRINVEL 77 (90) T ss_dssp HSCEEEEEECSSCEEEEESCHH----H---HHHHHHHHTTCEE-TTEECEEEE T ss_pred HCCEEEEEECCCEEEEEECCHH----H---HHHHHHHHCCCEE-CCEEEEEEE T ss_conf 4977488762636899989999----9---9999997299989-999979998 No 45 >1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A Probab=28.55 E-value=33 Score=15.34 Aligned_cols=45 Identities=24% Similarity=0.398 Sum_probs=28.4 Q ss_pred CCEEEEEE-CCCCEEEEEECCCCCCCCEEEEEEEE----CCCCCCC-CCCCCCEEE Q ss_conf 76277514-68874658854887788379999500----0235884-468998899 Q gi|254780913|r 4 RGSIKWYN-PDKGYGFITPEGSTESGDDVFLHRSA----VASAGLF-NLTEGQLVT 53 (78) Q Consensus 4 ~G~VKwfn-~~kGfGFI~~d~~~d~g~DvFvH~s~----i~~~g~~-~l~~G~~V~ 53 (78) .|+|.+-- ..-.||+-+ ++|-++++|+-. +...++. .+++||+|+ T Consensus 57 dG~I~~i~~T~HAigi~t-----~~G~eiLiHiGidTv~l~G~gF~~~vk~Gd~V~ 107 (161) T 1f3z_A 57 DGTIGKIFETNHAFSIES-----DSGVELFVHFGIDTVELKGEGFKRIAEEGQRVK 107 (161) T ss_dssp SEEEEEECTTSSEEEEEE-----TTSCEEEEECSBSGGGGTTTTEEECSCTTCEEC T ss_pred CEEEEEECCCCCEEEEEE-----CCCCEEEEEECCCHHHCCCCCEEEEECCCCEEE T ss_conf 979999868997999994-----899899999764577618974089976899993 No 46 >2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A Probab=27.92 E-value=30 Score=15.53 Aligned_cols=21 Identities=29% Similarity=0.441 Sum_probs=16.7 Q ss_pred CCCEEEEEECCCCEEEEEECC Q ss_conf 776277514688746588548 Q gi|254780913|r 3 HRGSIKWYNPDKGYGFITPEG 23 (78) Q Consensus 3 ~~G~VKwfn~~kGfGFI~~d~ 23 (78) .-|.|+..+..+||+||+-+. T Consensus 46 ~~G~i~~v~~~~g~afV~f~~ 66 (97) T 2xnq_A 46 PYGHIMQINIKNAFGFIQFDN 66 (97) T ss_dssp GGSCEEEEEECSSEEEEEESS T ss_pred HCCCEEEEEEECCEEEEEECC T ss_conf 549957999858878998699 No 47 >1sr3_A APO-CCME; OB fold, beta barrel, flexible C-terminal domain, chaperone; NMR {Escherichia coli} SCOP: b.40.9.1 Probab=26.76 E-value=35 Score=15.15 Aligned_cols=62 Identities=18% Similarity=0.148 Sum_probs=39.7 Q ss_pred CCCCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEE Q ss_conf 9877627751468874658854887788379999500023588446899889999998699971110599 Q gi|254780913|r 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70 (78) Q Consensus 1 mm~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~~~gk~~A~~v 70 (78) |...|.|+|-.....+=|+.-| +...|-|..+-+..+- .++|+.|.-+ ..-..++...|..| T Consensus 36 ~V~~gSi~~~~~~~~~~F~itD----~~~~i~V~Y~G~lPdl---F~eg~~VVve-G~~~~~~~f~A~~v 97 (136) T 1sr3_A 36 MVMPGSVQRDPNSLKVTFTIYD----AEGSVDVSYEGILPDL---FREGQGVVVQ-GELEKGNHILAKEV 97 (136) T ss_dssp EECTTTCEECSSSSEEEEEEEC----SSCEEEEEEESCCCTT---CCTTSEEEEE-EEECSSSEEEESSC T ss_pred EEEEEEEEECCCCCEEEEEEEC----CCCEEEEEECCCCCHH---HCCCCEEEEE-EEECCCCEEEEEEE T ss_conf 9973158872897589999986----8846999985769645---4179809999-99888998999999 No 48 >2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A Probab=26.65 E-value=35 Score=15.14 Aligned_cols=58 Identities=24% Similarity=0.283 Sum_probs=43.9 Q ss_pred CCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCC---------C----CCCCCCCCEEEEEEEECCCCCC Q ss_conf 776277514688746588548877883799995000235---------8----8446899889999998699971 Q gi|254780913|r 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA---------G----LFNLTEGQLVTYDYVQNDANGK 64 (78) Q Consensus 3 ~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~---------g----~~~l~~G~~V~F~i~~~~~~gk 64 (78) ..|+|+--.+.-+=-||.. -.+++-|+|++++... + -..|.+||.|--++...+.+.| T Consensus 49 Y~GrV~~v~pgl~AAFVdi----G~~k~gFL~~~di~~~~~~~~~~~~~~~~I~~~l~~Gq~ilVQV~ke~~~~K 119 (517) T 2bx2_L 49 YKGKITRIEPSLEAAFVDY----GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNK 119 (517) T ss_dssp EEEEEEEEETTTTEEEEES----SSSSCEEEEGGGSCGGGCC-------CCCGGGTCCTTCEEEEEEEECCCTTC T ss_pred EEEEEEECCCCCCEEEEEE----CCCCCEEEEHHHCCHHHCCCCCCCCCCCCHHHCCCCCCEEEEEECCCCCCCC T ss_conf 9999942379886699961----8997148886884845415552224565554407899989999724676777 No 49 >1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A Probab=22.44 E-value=26 Score=15.90 Aligned_cols=13 Identities=38% Similarity=0.652 Sum_probs=9.7 Q ss_pred ECCCCEEEEEECC Q ss_conf 4688746588548 Q gi|254780913|r 11 NPDKGYGFITPEG 23 (78) Q Consensus 11 n~~kGfGFI~~d~ 23 (78) +..||||||.-.. T Consensus 38 ~~~kG~~FV~F~~ 50 (75) T 1iqt_A 38 NKRRGFCFITFKE 50 (75) T ss_dssp SSSCCCEEEECSS T ss_pred CCCCEEEEEEECC T ss_conf 9954089999888 No 50 >2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Probab=22.15 E-value=37 Score=15.03 Aligned_cols=44 Identities=23% Similarity=0.368 Sum_probs=24.1 Q ss_pred CCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCC-CCCCCCCCCCEEEEEE Q ss_conf 7627751468874658854887788379999500023-5884468998899999 Q gi|254780913|r 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVAS-AGLFNLTEGQLVTYDY 56 (78) Q Consensus 4 ~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~-~g~~~l~~G~~V~F~i 56 (78) -|.|.-..-.||||||+-+...+ . ..+|+. .+ ..+ .|.++..+. T Consensus 32 ~G~i~~v~i~rg~afV~f~~~~~----A---~~Ai~~l~g-~~~-~g~~l~V~~ 76 (90) T 2dnq_A 32 YGKVLECDIIKNYGFVHIEDKTA----A---EDAIRNLHH-YKL-HGVNINVEA 76 (90) T ss_dssp SSCEEEEEEETTEEEEEESSHHH----H---HHHHHHHTT-CBC-SSCBCEEEC T ss_pred HCCEEEEEECCCCEEEEECCHHH----H---HHHHHHCCC-CEE-CCEEEEEEE T ss_conf 19866998634519999899999----9---999998099-989-999989997 No 51 >2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1 Probab=21.51 E-value=45 Score=14.57 Aligned_cols=45 Identities=24% Similarity=0.378 Sum_probs=27.5 Q ss_pred CCEEEEEE-CCCCEEEEEECCCCCCCCEEEEEEE----ECCCCCCC-CCCCCCEEE Q ss_conf 76277514-6887465885488778837999950----00235884-468998899 Q gi|254780913|r 4 RGSIKWYN-PDKGYGFITPEGSTESGDDVFLHRS----AVASAGLF-NLTEGQLVT 53 (78) Q Consensus 4 ~G~VKwfn-~~kGfGFI~~d~~~d~g~DvFvH~s----~i~~~g~~-~l~~G~~V~ 53 (78) .|+|.+-- ..--||+.+ ++|-+|++|+- .|...++. .+++||+|. T Consensus 52 dG~V~~i~~T~HAigi~t-----~~G~eiLIHiGidTV~L~G~gF~~~v~~Gd~V~ 102 (154) T 2gpr_A 52 SGKLVTAFPTKHAFGIQT-----KSGVEILLHIGLDTVSLDGNGFESFVTQDQEVN 102 (154) T ss_dssp CEEEEECCTTCSEEEEEC-----TTSCEEEEECSSSGGGGTTCSEEECCCTTCEEC T ss_pred CCEEEEECCCCCEEEEEC-----CCCCEEEEEECCCHHHCCCCCEEEEECCCCEEC T ss_conf 829999868997999996-----999899999762541038973699973899995 No 52 >2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A Probab=21.35 E-value=43 Score=14.64 Aligned_cols=19 Identities=26% Similarity=0.433 Sum_probs=14.8 Q ss_pred CEEEEEECCCCEEEEEECC Q ss_conf 6277514688746588548 Q gi|254780913|r 5 GSIKWYNPDKGYGFITPEG 23 (78) Q Consensus 5 G~VKwfn~~kGfGFI~~d~ 23 (78) |.|+-..-.||||||.-.. T Consensus 36 G~v~~v~~~r~~afV~f~~ 54 (103) T 2dgu_A 36 GKLERVKKLKDYAFIHFDE 54 (103) T ss_dssp SCEEEEEECSSCEEEEESS T ss_pred CCCCCCCEEEEEEEEEECC T ss_conf 9743220564477889799 No 53 >2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Probab=21.03 E-value=36 Score=15.11 Aligned_cols=21 Identities=24% Similarity=0.321 Sum_probs=16.0 Q ss_pred CCCEEEEEECCCCEEEEEECC Q ss_conf 776277514688746588548 Q gi|254780913|r 3 HRGSIKWYNPDKGYGFITPEG 23 (78) Q Consensus 3 ~~G~VKwfn~~kGfGFI~~d~ 23 (78) .-|.|.-..-.|||+||+-+. T Consensus 33 ~~G~i~~~~i~k~~afV~f~~ 53 (92) T 2dgt_A 33 EYGPVIECDIVKDYAFVHMER 53 (92) T ss_dssp TTSCCCEEEECSSEEEEEESC T ss_pred HHCCCCEEEECCCEEEEEECC T ss_conf 859972774646378999899 No 54 >2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=20.44 E-value=28 Score=15.66 Aligned_cols=12 Identities=42% Similarity=0.850 Sum_probs=9.2 Q ss_pred CCCCEEEEEECC Q ss_conf 688746588548 Q gi|254780913|r 12 PDKGYGFITPEG 23 (78) Q Consensus 12 ~~kGfGFI~~d~ 23 (78) ..||||||+-+. T Consensus 50 ~~kGfaFV~F~~ 61 (114) T 2dnl_A 50 PPKGYAFLLFQE 61 (114) T ss_dssp CTTSEEEECCSS T ss_pred CCCCEEEEEECC T ss_conf 877679999789 No 55 >2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae} Probab=20.23 E-value=23 Score=16.15 Aligned_cols=12 Identities=8% Similarity=-0.225 Sum_probs=8.9 Q ss_pred CCCCEEEEEECC Q ss_conf 688746588548 Q gi|254780913|r 12 PDKGYGFITPEG 23 (78) Q Consensus 12 ~~kGfGFI~~d~ 23 (78) ..||||||+-.. T Consensus 46 ~srG~gFV~F~~ 57 (136) T 2j8a_A 46 LPLHVYLIKYAS 57 (136) T ss_dssp CEEEEEEEECC- T ss_pred CEEEEEEEEEEC T ss_conf 754699999814 Done!