HHSEARCH alignment of GI: 254780913 and SCOP domain: d1g6pa_

Alignment
>d1g6pa_ b.40.4.5 (A:) Major cold shock protein {Thermotoga maritima [TaxId: 2336]}
Probab=99.85  E-value=5.3e-22  Score=141.20  Aligned_cols=66  Identities=41%  Similarity=0.806  Sum_probs=59.0

Q ss_pred             CCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEECC
Q ss_conf             776277514688746588548877883799995000235884468998899999986999711105999635
Q gi|254780913|r    3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVP   74 (78)
Q Consensus         3 ~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~~~gk~~A~~v~~i~   74 (78)
                      .+|+|||||++||||||+++    +|+|||+|+|+|+.+++++|.+|++|+|++.+++++  ++|.+|++|.
T Consensus         1 l~G~Vk~f~~~kGfGFI~~~----~g~diFvH~s~l~~~g~~~l~~G~~V~f~~~~~~~G--~~A~~V~~id   66 (66)
T d1g6pa_           1 MRGKVKWFDSKKGYGFITKD----EGGDVFVHWSAIEMEGFKTLKEGQVVEFEIQEGKKG--PQAAHVKVVE   66 (66)
T ss_dssp             CCEEEEEEETTTTEEEEEET----TSCBCBBCSSSSCCSSCCCCCSSSEEEEEEECSSSC--CEEEEEEEEC
T ss_pred             CEEEEEEEECCCCEEEEEEC----CCCEEEEEHHHHCCCCCCCCCCCCEEEEEEEECCCC--CEEEEEEECC
T ss_conf             91899999699986189766----996199993781324798689999999999989899--7999999549


SCOP domain information

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: Major cold shock protein
species: Thermotoga maritima [TaxId: 2336]