HHSEARCH alignment of GI: 254780913 and SCOP domain: d1wfqa_

Alignment

Probab=99.73  E-value=5e-18  Score=119.02  Aligned_cols=71  Identities=27%  Similarity=0.367  Sum_probs=61.9

Q ss_pred             CCCCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEECCCCC
Q ss_conf             98776277514688746588548877883799995000235884468998899999986999711105999635788
Q gi|254780913|r    1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKSS   77 (78)
Q Consensus         1 mm~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~~~gk~~A~~v~~i~~~~   77 (78)
                      ++.+|+|+||+  +|||||+++   ++++|||+|+|++. .+++.|.+||+|+|++.++++++|++|++|..++.-+
T Consensus        17 ~r~~G~I~~~~--~gfGFI~~~---~~~~dvF~H~s~~~-~~~~~l~~G~~VeF~v~~~~kg~k~~Av~V~~~~~p~   87 (89)
T d1wfqa_          17 LRETGVIEKLL--TSYGFIQCS---ERQARLFFHCSQYN-GNLQDLKVGDDVEFEVSSDRRTGKPIAVKLVKISGPS   87 (89)
T ss_dssp             CEEEEEEEEEC--SSEEEEEET---TTTEEEEEETTTCS-SCTTTCCTTCCEEEEEEECSSSCCEEEEEEEESSCCC
T ss_pred             CEEEEEEEEEC--CCCCEEEEC---CCCCEEEEEEEHHH-CCCCCCCCCCEEEEEEEECCCCCCEEEEEEEECCCCC
T ss_conf             06779998955--741048718---99845999952200-4678546787999999989989925889988788899

SCOP domain information

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: Cold shock domain protein E1 (UNR)
species: Human (Homo sapiens) [TaxId: 9606]