Query gi|254780913|ref|YP_003065326.1| cold shock protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 78 No_of_seqs 112 out of 2159 Neff 6.0 Searched_HMMs 13730 Date Wed Jun 1 10:41:26 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780913.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1mjca_ b.40.4.5 (A:) Major co 99.9 6E-23 4.3E-27 146.5 8.0 67 2-73 3-69 (69) 2 d1c9oa_ b.40.4.5 (A:) Major co 99.9 5.2E-23 3.8E-27 146.8 7.6 66 2-73 1-66 (66) 3 d1h95a_ b.40.4.5 (A:) Y-box pr 99.9 2.4E-22 1.8E-26 143.1 6.3 65 3-72 9-77 (79) 4 d1g6pa_ b.40.4.5 (A:) Major co 99.8 5.3E-22 3.9E-26 141.2 6.3 66 3-74 1-66 (66) 5 d1wfqa_ b.40.4.5 (A:) Cold sho 99.7 5E-18 3.6E-22 119.0 8.1 71 1-77 17-87 (89) 6 d2ix0a2 b.40.4.5 (A:4-82) Exor 97.5 5.9E-05 4.3E-09 46.0 5.1 59 4-75 20-78 (79) 7 d1a62a2 b.40.4.5 (A:48-125) Rh 96.1 0.0046 3.4E-07 35.5 5.2 59 13-74 12-73 (78) 8 d2ix0a1 b.40.4.5 (A:83-172) Ex 94.2 0.17 1.3E-05 26.7 9.1 67 7-77 5-73 (90) 9 d1sroa_ b.40.4.5 (A:) S1 RNA-b 86.7 0.29 2.1E-05 25.4 3.5 57 2-64 8-68 (76) 10 d1kl9a2 b.40.4.5 (A:3-88) Euka 75.4 2.6 0.00019 20.1 6.1 54 3-61 17-75 (86) 11 d1wi5a_ b.40.4.5 (A:) S1-domai 71.9 3.2 0.00023 19.6 6.3 59 1-64 23-86 (119) 12 d2ahob2 b.40.4.5 (B:1-84) Euka 69.5 3 0.00022 19.8 4.2 55 2-61 14-73 (84) 13 d2ba0a1 b.40.4.5 (A:53-135) S1 67.0 4.1 0.0003 19.0 5.7 56 3-64 9-69 (83) 14 d2z0sa1 b.40.4.5 (A:60-147) S1 63.7 4.8 0.00035 18.6 5.0 62 3-73 11-80 (88) 15 d1smxa_ b.40.4.5 (A:) S1-domai 62.8 5 0.00036 18.6 6.5 58 3-64 4-74 (87) 16 d1e3pa2 b.40.4.5 (A:656-717) S 62.8 0.4 2.9E-05 24.7 -1.4 53 5-63 1-61 (62) 17 d1go3e1 b.40.4.5 (E:79-184) C- 61.6 5.2 0.00038 18.4 6.0 51 3-60 7-72 (106) 18 d2je6i1 b.40.4.5 (I:66-152) S1 61.4 4.9 0.00036 18.6 4.0 56 3-64 11-73 (87) 19 d3bzka4 b.40.4.5 (A:637-730) T 55.9 6.6 0.00048 17.9 5.0 54 3-62 22-79 (94) 20 d1gpra_ b.84.3.1 (A:) Glucose 46.4 9.5 0.00069 17.0 4.8 45 4-53 54-104 (158) 21 d1y14b1 b.40.4.5 (B:81-171) C- 45.0 10 0.00073 16.9 6.0 49 4-59 8-70 (91) 22 d2gpra_ b.84.3.1 (A:) Glucose 39.7 12 0.00089 16.4 4.2 45 4-53 52-102 (154) 23 d2nn6g1 b.40.4.5 (G:107-194) S 38.8 13 0.00092 16.3 4.7 54 5-64 12-68 (88) 24 d1wf2a_ d.58.7.1 (A:) Heteroge 35.1 9.8 0.00071 16.9 2.1 47 3-57 39-85 (98) 25 d2nn6h1 b.40.4.5 (H:73-167) S1 33.3 16 0.0011 15.8 2.9 56 3-64 12-81 (95) 26 d2c35b1 b.40.4.5 (B:78-171) C- 30.5 17 0.0013 15.5 4.9 48 4-58 9-72 (94) 27 d2vnud1 b.40.4.5 (D:400-494) E 29.2 18 0.0013 15.4 7.1 60 11-78 17-77 (95) 28 d2fura1 b.45.1.1 (A:16-208) Hy 28.8 13 0.00093 16.3 1.8 52 5-59 19-70 (193) 29 d1uwva1 b.40.4.12 (A:15-74) rR 28.1 19 0.0014 15.3 4.0 55 6-77 6-60 (60) 30 d1x4ga1 d.58.7.1 (A:8-103) Nuc 27.3 19 0.0014 15.3 2.6 19 5-23 43-63 (96) 31 d1t9ha1 b.40.4.5 (A:1-67) Prob 25.2 22 0.0016 15.0 6.7 64 2-75 1-66 (67) 32 d2f3ga_ b.84.3.1 (A:) Glucose- 22.0 25 0.0018 14.6 4.8 45 4-53 46-96 (150) 33 d1x0fa1 d.58.7.1 (A:183-257) N 20.2 18 0.0013 15.4 1.3 13 11-23 38-50 (75) No 1 >d1mjca_ b.40.4.5 (A:) Major cold shock protein {Escherichia coli [TaxId: 562]} Probab=99.87 E-value=6e-23 Score=146.50 Aligned_cols=67 Identities=39% Similarity=0.720 Sum_probs=60.2 Q ss_pred CCCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEC Q ss_conf 877627751468874658854887788379999500023588446899889999998699971110599963 Q gi|254780913|r 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73 (78) Q Consensus 2 m~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~~~gk~~A~~v~~i 73 (78) ..+|+|||||.+||||||+|| ++++|||||+|+|+..+++.|.+||+|+|++.+++++ ++|.||+.| T Consensus 3 r~~G~Vk~f~~~kGfGFI~~d---~g~~diFvH~s~l~~~~~~~L~~G~~V~f~~~~~~~G--~~A~~V~~l 69 (69) T d1mjca_ 3 KMTGIVKWFNADKGFGFITPD---DGSKDVFVHFSAIQNDGYKSLDEGQKVSFTIESGAKG--PAAGNVTSL 69 (69) T ss_dssp CEEEEEEEEETTTTEEEEEET---TSCCCEEEEGGGBCCTTTCCCCTTCEEEEEEECCSSS--CEEEEEEEC T ss_pred CEEEEEEEEECCCCEEEEEEC---CCCCCEEEEHHHHCCCCCCCCCCCCEEEEEEEECCCC--CEEEEEEEC T ss_conf 788999999399997999976---8983299995890522798689999999999959899--677879949 No 2 >d1c9oa_ b.40.4.5 (A:) Major cold shock protein {Bacillus caldolyticus [TaxId: 1394]} Probab=99.87 E-value=5.2e-23 Score=146.85 Aligned_cols=66 Identities=42% Similarity=0.808 Sum_probs=59.9 Q ss_pred CCCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEC Q ss_conf 877627751468874658854887788379999500023588446899889999998699971110599963 Q gi|254780913|r 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73 (78) Q Consensus 2 m~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~~~gk~~A~~v~~i 73 (78) |++|+|||||++||||||++| +|+|||+|+|+|+.++++.|.+|++|+|++.+++++ ++|.+|+.| T Consensus 1 M~~G~Vk~fn~~kGfGFI~~d----~g~DiF~H~s~l~~~~~~~L~~G~~V~f~~~~~~~G--~~A~~V~~l 66 (66) T d1c9oa_ 1 MQRGKVKWFNNEKGYGFIEVE----GGSDVFVHFTAIQGEGFKTLEEGQEVSFEIVQGNRG--PQAANVVKL 66 (66) T ss_dssp CEEEEEEEEETTTTEEEEEET----TEEEEEEEGGGBCSSSCCCCCTTCEEEEEEEEETTE--EEEEEEEEC T ss_pred CCCEEEEEEECCCCEEEEEEC----CCCEEEEEEHHCCCCCCCCCCCCCEEEEEEEECCCC--CEEEEEEEC T ss_conf 998199999799998999866----993399990462613687689999999999989999--797888979 No 3 >d1h95a_ b.40.4.5 (A:) Y-box protein 1 cold shock domain (YB1-CSD) {Human (Homo sapiens) [TaxId: 9606]} Probab=99.85 E-value=2.4e-22 Score=143.09 Aligned_cols=65 Identities=32% Similarity=0.695 Sum_probs=56.8 Q ss_pred CCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCC----CCCCCCCCEEEEEEEECCCCCCCCCEEEEE Q ss_conf 7762775146887465885488778837999950002358----844689988999999869997111059996 Q gi|254780913|r 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQNDANGKYSAENLKL 72 (78) Q Consensus 3 ~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g----~~~l~~G~~V~F~i~~~~~~gk~~A~~v~~ 72 (78) .+|+|||||.+||||||+|| ++++|||||+|+|+..+ +++|.+||+|+|++.+++++ ++|.||+. T Consensus 9 ~~G~VKwfn~~KGfGFI~~d---dg~~DvFvH~s~i~~~g~~~~~~~L~~G~~V~f~~~~~~~G--~~A~~Vtg 77 (79) T d1h95a_ 9 VLGTVKWFNVRNGYGFINRN---DTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKG--AEAANVTG 77 (79) T ss_dssp EEEEEEEEETTTTEEEEEEG---GGTEEEEEEGGGBCSCCCSCCSCSCCSSCEEEEEEEECSSS--EEEESBCC T ss_pred CCEEEEEECCCCCEEEEEEC---CCCCCEEEEHHHCCCCCCCCEEEECCCCCEEEEEEEECCCC--CEEEEEEC T ss_conf 55799998199996999878---99864899916710479851151169999999999969999--76388767 No 4 >d1g6pa_ b.40.4.5 (A:) Major cold shock protein {Thermotoga maritima [TaxId: 2336]} Probab=99.85 E-value=5.3e-22 Score=141.20 Aligned_cols=66 Identities=41% Similarity=0.806 Sum_probs=59.0 Q ss_pred CCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEECC Q ss_conf 776277514688746588548877883799995000235884468998899999986999711105999635 Q gi|254780913|r 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVP 74 (78) Q Consensus 3 ~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~~~gk~~A~~v~~i~ 74 (78) .+|+|||||++||||||+++ +|+|||+|+|+|+.+++++|.+|++|+|++.+++++ ++|.+|++|. T Consensus 1 l~G~Vk~f~~~kGfGFI~~~----~g~diFvH~s~l~~~g~~~l~~G~~V~f~~~~~~~G--~~A~~V~~id 66 (66) T d1g6pa_ 1 MRGKVKWFDSKKGYGFITKD----EGGDVFVHWSAIEMEGFKTLKEGQVVEFEIQEGKKG--PQAAHVKVVE 66 (66) T ss_dssp CCEEEEEEETTTTEEEEEET----TSCBCBBCSSSSCCSSCCCCCSSSEEEEEEECSSSC--CEEEEEEEEC T ss_pred CEEEEEEEECCCCEEEEEEC----CCCEEEEEHHHHCCCCCCCCCCCCEEEEEEEECCCC--CEEEEEEECC T ss_conf 91899999699986189766----996199993781324798689999999999989899--7999999549 No 5 >d1wfqa_ b.40.4.5 (A:) Cold shock domain protein E1 (UNR) {Human (Homo sapiens) [TaxId: 9606]} Probab=99.73 E-value=5e-18 Score=119.02 Aligned_cols=71 Identities=27% Similarity=0.367 Sum_probs=61.9 Q ss_pred CCCCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEECCCCC Q ss_conf 98776277514688746588548877883799995000235884468998899999986999711105999635788 Q gi|254780913|r 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKSS 77 (78) Q Consensus 1 mm~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~~~gk~~A~~v~~i~~~~ 77 (78) ++.+|+|+||+ +|||||+++ ++++|||+|+|++. .+++.|.+||+|+|++.++++++|++|++|..++.-+ T Consensus 17 ~r~~G~I~~~~--~gfGFI~~~---~~~~dvF~H~s~~~-~~~~~l~~G~~VeF~v~~~~kg~k~~Av~V~~~~~p~ 87 (89) T d1wfqa_ 17 LRETGVIEKLL--TSYGFIQCS---ERQARLFFHCSQYN-GNLQDLKVGDDVEFEVSSDRRTGKPIAVKLVKISGPS 87 (89) T ss_dssp CEEEEEEEEEC--SSEEEEEET---TTTEEEEEETTTCS-SCTTTCCTTCCEEEEEEECSSSCCEEEEEEEESSCCC T ss_pred CEEEEEEEEEC--CCCCEEEEC---CCCCEEEEEEEHHH-CCCCCCCCCCEEEEEEEECCCCCCEEEEEEEECCCCC T ss_conf 06779998955--741048718---99845999952200-4678546787999999989989925889988788899 No 6 >d2ix0a2 b.40.4.5 (A:4-82) Exoribonuclease 2, RNB {Escherichia coli [TaxId: 562]} Probab=97.52 E-value=5.9e-05 Score=46.05 Aligned_cols=59 Identities=22% Similarity=0.376 Sum_probs=44.3 Q ss_pred CCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEECCC Q ss_conf 762775146887465885488778837999950002358844689988999999869997111059996357 Q gi|254780913|r 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 (78) Q Consensus 4 ~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~~~gk~~A~~v~~i~~ 75 (78) +|++.- ..+||||+.||+ ++|||+....+.. .-.|++|...+. ..++|+.+.-+++|+. T Consensus 20 ~G~i~~--~~~G~GFv~~d~----~~DifI~~~~~~~-----A~~GD~V~v~i~--~~~~r~eg~I~~ilE~ 78 (79) T d2ix0a2 20 EGVVKA--TEKGFGFLEVDA----QKSYFIPPPQMKK-----VMHGDRIIAVIH--SEKERESAEPEELVEP 78 (79) T ss_dssp EEEEEC--CC--CEEEEEET----TEEEEECHHHHTT-----CCTTCEEEEEEE--CC--CCEEEEEEEEEC T ss_pred EEEEEE--ECCCCEEEEECC----CCCEEECHHHHCC-----CCCCCEEEEEEE--ECCCCEEEEEEEEECC T ss_conf 999999--579858998789----9748979799867-----889999999999--5799678999999657 No 7 >d1a62a2 b.40.4.5 (A:48-125) Rho termination factor, RNA-binding domain {Escherichia coli [TaxId: 562]} Probab=96.09 E-value=0.0046 Score=35.48 Aligned_cols=59 Identities=15% Similarity=0.351 Sum_probs=39.9 Q ss_pred CCCEEEEEE--CCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCC-CCCEEEEECC Q ss_conf 887465885--4887788379999500023588446899889999998699971-1105999635 Q gi|254780913|r 13 DKGYGFITP--EGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK-YSAENLKLVP 74 (78) Q Consensus 13 ~kGfGFI~~--d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~~~gk-~~A~~v~~i~ 74 (78) ..|||||.. .+..-+-.||||..|.|+..+ |+.|+.|+=.+.....+-| ++...|..+. T Consensus 12 ~dGyGFLR~~~~~y~~~~~DiyVs~s~Irrfg---LR~GD~V~G~vr~p~~~ek~~~L~~V~~VN 73 (78) T d1a62a2 12 QDGFGFLRSADSSYLAGPDDIYVSPSQIRRFN---LRTGDTISGKIRPPKEGERYFALLKVNEVN 73 (78) T ss_dssp TTSCEEEECGGGTTCCCTTCEEECHHHHHHTT---CCTTCEEEEEEECCCTTCCSEEEEEEEEET T ss_pred CCCCEEEECCCCCCCCCCCCEEECHHHHHHHC---CCCCCEEEEEEECCCCCCCCEEEEEEEEEC T ss_conf 89828958886577988761677999999829---986758999888898888751058996467 No 8 >d2ix0a1 b.40.4.5 (A:83-172) Exoribonuclease 2, RNB {Escherichia coli [TaxId: 562]} Probab=94.16 E-value=0.17 Score=26.71 Aligned_cols=67 Identities=10% Similarity=0.071 Sum_probs=47.1 Q ss_pred EEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECC-CCCC-CCCEEEEECCCCC Q ss_conf 775146887465885488778837999950002358844689988999999869-9971-1105999635788 Q gi|254780913|r 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND-ANGK-YSAENLKLVPKSS 77 (78) Q Consensus 7 VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~-~~gk-~~A~~v~~i~~~~ 77 (78) |=.|-..+|++|+.||+.. =..|||+--... +....++||.|..++.+-+ ++.+ ++|.-+++|..+. T Consensus 5 VGr~~~~~~~~fVvPd~~r-i~~~I~I~~~~~---~~~~ak~Gd~Vvvei~~~P~~~~~~~~g~I~evlG~~~ 73 (90) T d2ix0a1 5 VGKVQGKNDRLAIVPDHPL-LKDAIPCRAARG---LNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGD 73 (90) T ss_dssp EEEEESCSSSEEEEESCTT-CCSCEEEEECTT---CCCCCCTTCEEEEEEEECGGGTCSSCEEEEEEECCCTT T ss_pred EEEEEEECCEEEEEECCCC-CCCCCCCCCCCC---CCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEEEECCC T ss_conf 9999996998999859985-366441264324---45567899799999976887789986589989873489 No 9 >d1sroa_ b.40.4.5 (A:) S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase {Escherichia coli [TaxId: 562]} Probab=86.73 E-value=0.29 Score=25.42 Aligned_cols=57 Identities=23% Similarity=0.325 Sum_probs=39.8 Q ss_pred CCCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCC----CCCCCCCEEEEEEEECCCCCC Q ss_conf 877627751468874658854887788379999500023588----446899889999998699971 Q gi|254780913|r 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL----FNLTEGQLVTYDYVQNDANGK 64 (78) Q Consensus 2 m~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~----~~l~~G~~V~F~i~~~~~~gk 64 (78) ..+|+|+-..+ ||....- .++.+-|+|.|.+..... ..+..||.|++.+..-++.+| T Consensus 8 iv~G~V~~v~~---~G~fV~l---~~~~~Glv~~sels~~~~~~~~~~~~~G~~v~v~Vi~id~~~r 68 (76) T d1sroa_ 8 VYTGKVTRIVD---FGAFVAI---GGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGR 68 (76) T ss_dssp EEEEEEEEEET---TEEEEEC---SSSCCCBCCTTSSCSSCCSCHHHHCCTTCEEEEEEEECCTTCC T ss_pred EEEEEEEEEEC---CEEEEEE---CCCCEEEEEHHHHCCCCCCCHHHCCCCCCEEEEEEEEECCCCC T ss_conf 99999999967---6799995---7897899872772766547987812899999999999999998 No 10 >d1kl9a2 b.40.4.5 (A:3-88) Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Probab=75.44 E-value=2.6 Score=20.11 Aligned_cols=54 Identities=7% Similarity=-0.013 Sum_probs=35.9 Q ss_pred CCCEEEEEECCCCEE-EEEECCCCCCCCEEEEEEEECCCCC----CCCCCCCCEEEEEEEECCC Q ss_conf 776277514688746-5885488778837999950002358----8446899889999998699 Q gi|254780913|r 3 HRGSIKWYNPDKGYG-FITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQNDA 61 (78) Q Consensus 3 ~~G~VKwfn~~kGfG-FI~~d~~~d~g~DvFvH~s~i~~~g----~~~l~~G~~V~F~i~~~~~ 61 (78) .+|+|.-.. -|| ||..+. .++-+-|+|.|.|.... ...+..||.|...+..-+. T Consensus 17 v~G~V~~i~---~~G~fV~l~~--~~~i~G~i~~sels~~~~~~~~~~~~~Gd~v~~kV~~vd~ 75 (86) T d1kl9a2 17 VMVNVRSIA---EMGAYVSLLE--YNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDK 75 (86) T ss_dssp EEEEEEEEC---SSEEEEEETT--TTTEEEEEEGGGC------------CTTCEEEEEEEEEET T ss_pred EEEEEEEEE---CCEEEEEEEC--CCCEEEEEEEEECCCCCCCCCEEEEECCCEEEEEEEEEEC T ss_conf 999999995---8858999833--7998999985110545455621775055479999999989 No 11 >d1wi5a_ b.40.4.5 (A:) S1-domain of RRP5 protein homolog (PDCD11, KIAA0185) {Human (Homo sapiens) [TaxId: 9606]} Probab=71.94 E-value=3.2 Score=19.62 Aligned_cols=59 Identities=20% Similarity=0.271 Sum_probs=40.2 Q ss_pred CCCCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCC-----CCCCCCCCCCEEEEEEEECCCCCC Q ss_conf 9877627751468874658854887788379999500023-----588446899889999998699971 Q gi|254780913|r 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVAS-----AGLFNLTEGQLVTYDYVQNDANGK 64 (78) Q Consensus 1 mm~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~-----~g~~~l~~G~~V~F~i~~~~~~gk 64 (78) |..+|+|+-.. -||++..-+ ..+-+=|+|++.+.. .....+..||.|.+.+..-+...+ T Consensus 23 ~iv~G~V~~i~---~~G~~V~lg--~~~~~G~l~~~els~~~~~~~~~~~~~vGq~v~~~V~~vd~~~~ 86 (119) T d1wi5a_ 23 MLLTGTVSSLE---DHGYLVDIG--VDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVKGNGG 86 (119) T ss_dssp CEEEEEEEEEC---SSEEEEECC--CSSCEEEEEHHHHHHHHHHHSSSCCCCTTCEEEEEEEECCTTSC T ss_pred CEEEEEEEEEE---CCEEEEEEE--CCCCCEEEEHHHHCCCCCCCCHHHHCCCCEEEEEEEEEEECCCC T ss_conf 88999999871---418999984--26655287699932121338987943454699999999808997 No 12 >d2ahob2 b.40.4.5 (B:1-84) Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain {Sulfolobus solfataricus [TaxId: 2287]} Probab=69.55 E-value=3 Score=19.78 Aligned_cols=55 Identities=24% Similarity=0.218 Sum_probs=36.6 Q ss_pred CCCCEEEEEECCCCEEE-EEECCCCCCCCEEEEEEEECCCCC----CCCCCCCCEEEEEEEECCC Q ss_conf 87762775146887465-885488778837999950002358----8446899889999998699 Q gi|254780913|r 2 VHRGSIKWYNPDKGYGF-ITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQNDA 61 (78) Q Consensus 2 m~~G~VKwfn~~kGfGF-I~~d~~~d~g~DvFvH~s~i~~~g----~~~l~~G~~V~F~i~~~~~ 61 (78) ..+|+|+-..+ ||. |..+. .++-+-|+|.|.+.... ...+..||.|.+.+..-+. T Consensus 14 iv~G~V~~v~~---~G~fV~l~~--~~gi~Gli~~sels~~~~~~~~~~~~~G~~v~~kV~~vd~ 73 (84) T d2ahob2 14 ILIATVKQVFD---YGSYVSLDE--YGGLQAFLPWSEVSSKWVKNIRDVLKENRKVIVKVIRVDR 73 (84) T ss_dssp CCEEEEEEEET---TEEEEEETT--TTTEEEEECGGGCC-----CHHHHTCSSCEEECEEEEEET T ss_pred EEEEEEEEEEC---CEEEEEECC--CCCEEEEEECCCCCCCCCCCCCEEEECCCEEEEEEEEEEC T ss_conf 99999999979---878999777--6987999974342542035640575113379999999989 No 13 >d2ba0a1 b.40.4.5 (A:53-135) S1-domain of exosome complex RNA-binding protein 1, ECR1 {Archaeoglobus fulgidus [TaxId: 2234]} Probab=67.01 E-value=4.1 Score=19.01 Aligned_cols=56 Identities=20% Similarity=0.076 Sum_probs=36.7 Q ss_pred CCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCC-----CCCCCCCCEEEEEEEECCCCCC Q ss_conf 7762775146887465885488778837999950002358-----8446899889999998699971 Q gi|254780913|r 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-----LFNLTEGQLVTYDYVQNDANGK 64 (78) Q Consensus 3 ~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g-----~~~l~~G~~V~F~i~~~~~~gk 64 (78) -+|+|+--.+ ||....- .++-+-|+|.|.+.... ...++.||.|...+..-++.++ T Consensus 9 V~G~V~~v~~---~g~~V~i---~~~~~g~l~~se~s~~~~~~~~~~~~~vGd~V~~kV~~vd~~~~ 69 (83) T d2ba0a1 9 VIGIIREVAA---NGWAVDI---YSPYQAFLPVSENPEMKPNKKPNEVLDIGDAIIAKVLNIDPKMK 69 (83) T ss_dssp EEEEEEEECS---SEEEEEC---SSSSCEEEEGGGCTTCCTTSCGGGTCCTTCEEEEEEEEECTTCC T ss_pred EEEEEEEEEC---CEEEEEC---CCCEEEEEECCCCCCCCCCCCHHHHCCCCCEEEEEEEEECCCCC T ss_conf 9999999979---8899964---89946887620304633335733522456679999999999998 No 14 >d2z0sa1 b.40.4.5 (A:60-147) S1-domain of exosome complex RNA-binding protein 1, ECR1 {Aeropyrum pernix [TaxId: 56636]} Probab=63.68 E-value=4.8 Score=18.65 Aligned_cols=62 Identities=15% Similarity=0.007 Sum_probs=39.7 Q ss_pred CCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCC--------CCCCCCCCEEEEEEEECCCCCCCCCEEEEEC Q ss_conf 7762775146887465885488778837999950002358--------8446899889999998699971110599963 Q gi|254780913|r 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG--------LFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73 (78) Q Consensus 3 ~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g--------~~~l~~G~~V~F~i~~~~~~gk~~A~~v~~i 73 (78) -.|+|+--. .||+...= .++.+-|+|.|++.... .+.+..||.|...+..-++.++ ..+++- T Consensus 11 V~G~V~~v~---~~g~fV~i---~~~~~g~l~~se~~~~~~~~~~~~~~~~~~vGd~V~~kV~~vd~~~~---i~Ls~k 80 (88) T d2z0sa1 11 VIGLIQSVG---IMNWFVDI---NSPYVAVLSVQDFLGRPFNPAVDDMQSLLKVGDYIKAKVVAFDKTRS---PLLTVQ 80 (88) T ss_dssp EEEEEEEEC---SSEEEEEC---SSSSCEEEEHHHHHTSCCCTTTTCCTTSSCTTCEEEEEEEEECTTSC---EEEECC T ss_pred EEEEEEEEE---CCEEEEEE---CCCEEEEEEHHHHCCCCCCCCCCCHHHHCCCCCEEEEEEEEECCCCC---EEEEEE T ss_conf 999999997---98699996---89927787169927443332235604413567579999999999999---999975 No 15 >d1smxa_ b.40.4.5 (A:) S1-domain of Ribonuclease E {Escherichia coli [TaxId: 562]} Probab=62.85 E-value=5 Score=18.56 Aligned_cols=58 Identities=22% Similarity=0.222 Sum_probs=43.5 Q ss_pred CCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCC-------------CCCCCCCCEEEEEEEECCCCCC Q ss_conf 7762775146887465885488778837999950002358-------------8446899889999998699971 Q gi|254780913|r 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-------------LFNLTEGQLVTYDYVQNDANGK 64 (78) Q Consensus 3 ~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g-------------~~~l~~G~~V~F~i~~~~~~gk 64 (78) ..|+|+-..+.-.==||... .+++-|+|++++...- ...|++||.|-.++...+.+.| T Consensus 4 Y~G~V~~V~pgl~AAFVDiG----~~k~gFL~~~di~~~~~~~~~~~~~~~~i~~~l~~G~~ilVQV~Ke~~~~K 74 (87) T d1smxa_ 4 YKGKITRIEPSLEAAFVDYG----AERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNK 74 (87) T ss_dssp EEEEEEEEEGGGTEEEEESS----SSSCEEEEGGGSCGGGCSSCCCSSSCCCGGGTCCTTCEEEEEEEECCBTTB T ss_pred EEEEEEEECCCCEEEEEEEC----CCCCCEEEECCCCEEEECCCCCCCCCCCHHHHCCCCCEEEEEEEECCCCCC T ss_conf 79999781678508999708----876441570320034201364323332234320379738999844366788 No 16 >d1e3pa2 b.40.4.5 (A:656-717) S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase {Streptomyces antibioticus [TaxId: 1890]} Probab=62.77 E-value=0.4 Score=24.70 Aligned_cols=53 Identities=26% Similarity=0.280 Sum_probs=32.1 Q ss_pred CEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCC--------CCCCCCCCCEEEEEEEECCCCC Q ss_conf 6277514688746588548877883799995000235--------8844689988999999869997 Q gi|254780913|r 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA--------GLFNLTEGQLVTYDYVQNDANG 63 (78) Q Consensus 5 G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~--------g~~~l~~G~~V~F~i~~~~~~g 63 (78) |+|+-.. =||.... ..++.+-|+|+|.|... -...+..||.|...+..-++.+ T Consensus 1 G~V~~i~---~fG~FV~---l~~g~~Glihiseis~~~~~~~v~~~~~~~~~G~~V~vkV~~iD~~~ 61 (62) T d1e3pa2 1 GSVVKTT---TFGAFVS---LLPGKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEIDSRG 61 (62) T ss_dssp CBEEECC----CSCEEC---CC---CCCCC-------------------CCSSCBCCCCCCCCCSSC T ss_pred CEEEEEE---ECEEEEE---ECCCCEEEEEHHHCCCCCCCCCCCCHHHHCCCCCEEEEEEEEECCCC T ss_conf 9999997---0228999---56993679998991634366410698882689999999999986899 No 17 >d1go3e1 b.40.4.5 (E:79-184) C-terminal domain of RNA polymerase II subunit RBP7 (RpoE) {Archaeon Methanococcus jannaschii [TaxId: 2190]} Probab=61.63 E-value=5.2 Score=18.43 Aligned_cols=51 Identities=18% Similarity=0.099 Sum_probs=35.4 Q ss_pred CCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCC---------------CCCCCCCEEEEEEEECC Q ss_conf 77627751468874658854887788379999500023588---------------44689988999999869 Q gi|254780913|r 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL---------------FNLTEGQLVTYDYVQND 60 (78) Q Consensus 3 ~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~---------------~~l~~G~~V~F~i~~~~ 60 (78) ..|+|..-+ -|||.+.- ++-|-|+|.|.|...-+ ..+..||.|...+..-+ T Consensus 7 ~~g~V~~v~---~~G~FVel----~~ieGlv~~s~l~~~~~~~~~~~~~~~~~~~~~~~~~Gd~v~vkV~~vd 72 (106) T d1go3e1 7 IEGEVVDVV---EFGSFVRL----GPLDGLIHVSQIMDDYVSYDPKREAIIGKETGKVLEIGDYVRARIVAIS 72 (106) T ss_dssp EEEEEEEEE---TTEEEEEC----SSSEEEEEGGGSCSSCEEECCC--CEEETTTCCEECTTCEEEEEEEEEE T ss_pred EEEEEEEEE---EEEEEEEE----ECEEEEEEEECCCCCEEEECCCEEEEEECCCCCCEEECCEEEEEEEEEC T ss_conf 999999996---03899996----0869899800036760650101157860456632230456999999984 No 18 >d2je6i1 b.40.4.5 (I:66-152) S1-domain of exosome complex RNA-binding protein 1, ECR1 {Sulfolobus solfataricus [TaxId: 2287]} Probab=61.40 E-value=4.9 Score=18.60 Aligned_cols=56 Identities=16% Similarity=0.092 Sum_probs=36.7 Q ss_pred CCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCC-------CCCCCCCCCEEEEEEEECCCCCC Q ss_conf 776277514688746588548877883799995000235-------88446899889999998699971 Q gi|254780913|r 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA-------GLFNLTEGQLVTYDYVQNDANGK 64 (78) Q Consensus 3 ~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~-------g~~~l~~G~~V~F~i~~~~~~gk 64 (78) -.|+|+--. .||....- .++-+-|+|.|.+... -.+.+..||.|...+..-++.++ T Consensus 11 v~G~V~~i~---~~g~fV~i---~~~~~gll~~s~~~~~~~~~~~~~~~~~~~Gd~v~~kV~~vd~~~~ 73 (87) T d2je6i1 11 VIGLVEDVE---IYGWVVDI---KAPYKAYLPASNLLGRSINVGEDLRRYLDVGDYVIARIENFDRSID 73 (87) T ss_dssp EEEEEEEEC---SSEEEEEC---SSSSCEEEEHHHHHTSCCCTTCCCSSSCCTTCEEEEEEEEEETTEE T ss_pred EEEEEEEEE---CCEEEEEE---CCCEEEEEEHHHHCCCEECCCCCCCHHHCCCCEEEEEEEEECCCCC T ss_conf 999999998---98899994---8997999866893772001344410100136569999999999998 No 19 >d3bzka4 b.40.4.5 (A:637-730) Tex S1-domain {Pseudomonas aeruginosa [TaxId: 287]} Probab=55.95 E-value=6.6 Score=17.87 Aligned_cols=54 Identities=17% Similarity=0.186 Sum_probs=36.8 Q ss_pred CCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCC----CCCCCCCCEEEEEEEECCCC Q ss_conf 7762775146887465885488778837999950002358----84468998899999986999 Q gi|254780913|r 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQNDAN 62 (78) Q Consensus 3 ~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g----~~~l~~G~~V~F~i~~~~~~ 62 (78) .+|+|+-... ||.+..- .++-+-|+|.+.+...- ...+..||.|.+.+..-+.. T Consensus 22 v~g~V~~v~~---~G~~V~l---~~~i~G~i~~~~ls~~~~~~~~~~~~vGq~v~~~V~~id~~ 79 (94) T d3bzka4 22 LEGVVTNVTN---FGAFVDI---GVHQDGLVHISALSEKFVKDPYEVVKAGDIVKVKVMEVDIP 79 (94) T ss_dssp EEEEEEEEET---TEEEEEC---SSSSCEEEEGGGGCSSCCSCHHHHCCTTCEEEEEEEEEETT T ss_pred EEEEEEEEEC---CEEEEEE---CCCCEEEEEHHHHHCCCCCCHHHHHCCCCEEEEEEEEEECC T ss_conf 9999999978---6799996---89946774433230232358336423575799999999899 No 20 >d1gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc {Bacillus subtilis [TaxId: 1423]} Probab=46.44 E-value=9.5 Score=17.00 Aligned_cols=45 Identities=22% Similarity=0.459 Sum_probs=29.2 Q ss_pred CCEEEEE-ECCCCEEEEEECCCCCCCCEEEEEEE----ECCCCCCC-CCCCCCEEE Q ss_conf 7627751-46887465885488778837999950----00235884-468998899 Q gi|254780913|r 4 RGSIKWY-NPDKGYGFITPEGSTESGDDVFLHRS----AVASAGLF-NLTEGQLVT 53 (78) Q Consensus 4 ~G~VKwf-n~~kGfGFI~~d~~~d~g~DvFvH~s----~i~~~g~~-~l~~G~~V~ 53 (78) .|+|.+- ...--||+-+ +.|-++++|+- .|...++. .+++||+|. T Consensus 54 ~G~I~~i~~T~HAigi~t-----~~G~evLiHiGiDTV~L~G~gF~~~v~~Gd~Vk 104 (158) T d1gpra_ 54 RGKILNVFPTKHAIGLQS-----DGGREILIHFGIDTVSLKGEGFTSFVSEGDRVE 104 (158) T ss_dssp SEEEEEECTTSSEEEEEE-----TTSCEEEEECSBSCGGGTTTTEEECCCTTCEEC T ss_pred CEEEEEECCCCCEEEEEE-----CCCEEEEEEEEECCCCCCCCCEEEEECCCCEEC T ss_conf 859999837997999994-----897299999800520148960699986899996 No 21 >d1y14b1 b.40.4.5 (B:81-171) C-terminal domain of RNA polymerase II subunit RBP7 (RpoE) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=44.98 E-value=10 Score=16.87 Aligned_cols=49 Identities=10% Similarity=0.108 Sum_probs=31.3 Q ss_pred CCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCC--------------CCCCCCCCCEEEEEEEEC Q ss_conf 76277514688746588548877883799995000235--------------884468998899999986 Q gi|254780913|r 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA--------------GLFNLTEGQLVTYDYVQN 59 (78) Q Consensus 4 ~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~--------------g~~~l~~G~~V~F~i~~~ 59 (78) .|+|+--+ +.|+ |+.. +.-|.|+|.+.+... .-+.+..|+.|.+.+..- T Consensus 8 ~g~I~~v~-~~G~-fv~l-----g~~eg~i~~~~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~VrvkV~~v 70 (91) T d1y14b1 8 DGTVVSCS-QHGF-EVQV-----GPMKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGC 70 (91) T ss_dssp EEEEEEEE-TTEE-EEEE-----TTEEEEEEGGGSCTTCEECC-----CEECSSCEECTTCEEEEEEEEE T ss_pred EEEEEEEE-EEEE-EEEE-----CCEEEEEEHHHCCCCEEECCCCCEEEECCCCEEEECCCEEEEEEEEE T ss_conf 99999898-1689-9997-----58499999544476337815545168613674996899999999998 No 22 >d2gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc {Mycoplasma capricolum [TaxId: 2095]} Probab=39.65 E-value=12 Score=16.39 Aligned_cols=45 Identities=27% Similarity=0.430 Sum_probs=28.1 Q ss_pred CCEEEEEECC-CCEEEEEECCCCCCCCEEEEEEE----ECCCCCCC-CCCCCCEEE Q ss_conf 7627751468-87465885488778837999950----00235884-468998899 Q gi|254780913|r 4 RGSIKWYNPD-KGYGFITPEGSTESGDDVFLHRS----AVASAGLF-NLTEGQLVT 53 (78) Q Consensus 4 ~G~VKwfn~~-kGfGFI~~d~~~d~g~DvFvH~s----~i~~~g~~-~l~~G~~V~ 53 (78) .|+|.+--+. --||+-+ ++|-++++|+- .|...++. .+++||+|. T Consensus 52 dG~I~~i~~T~HAigi~t-----~~G~eiLIHiGidTV~L~G~gF~~~v~~Gd~V~ 102 (154) T d2gpra_ 52 SGKLVTAFPTKHAFGIQT-----KSGVEILLHIGLDTVSLDGNGFESFVTQDQEVN 102 (154) T ss_dssp CEEEEECCTTCSEEEEEC-----TTSCEEEEECSSSGGGGTTCSEEECCCTTCEEC T ss_pred CEEEEEECCCCCEEEEEE-----CCCCEEEEEECCCCCCCCCCEEEEEECCCCEEC T ss_conf 809999877896999991-----899899999763610158832689954899990 No 23 >d2nn6g1 b.40.4.5 (G:107-194) S1-domain of exosome component 3 (RRP40) {Human (Homo sapiens) [TaxId: 9606]} Probab=38.79 E-value=13 Score=16.31 Aligned_cols=54 Identities=19% Similarity=0.207 Sum_probs=35.2 Q ss_pred CEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCC---CCCCCCCCCEEEEEEEECCCCCC Q ss_conf 6277514688746588548877883799995000235---88446899889999998699971 Q gi|254780913|r 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA---GLFNLTEGQLVTYDYVQNDANGK 64 (78) Q Consensus 5 G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~---g~~~l~~G~~V~F~i~~~~~~gk 64 (78) |+|.- ..++++...=+ ...+-++|+|++... -...|..||.|...+..-++.++ T Consensus 12 G~V~~---~~~~~~~VdI~---s~~~a~L~~~~f~g~~k~~r~~l~~GD~V~arV~~v~~~~~ 68 (88) T d2nn6g1 12 GIVTA---KSGDIFKVDVG---GSEPASLSYLSFEGATKRNRPNVQVGDLIYGQFVVANKDME 68 (88) T ss_dssp EEEEE---EETTEEEEECS---SSSCCCEESCSSSCCSSCSSSSSCTTCEEEEEEEECCTTSC T ss_pred EEEEE---EECCEEEEECC---CCEEEEEEHHHCCCCCCCCCCCCCCCCEEEEEEEEECCCCC T ss_conf 99999---96871999848---99069970888376532457604889999999999589997 No 24 >d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins C1/C2 {Human (Homo sapiens) [TaxId: 9606]} Probab=35.08 E-value=9.8 Score=16.92 Aligned_cols=47 Identities=23% Similarity=0.342 Sum_probs=27.0 Q ss_pred CCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEE Q ss_conf 7762775146887465885488778837999950002358844689988999999 Q gi|254780913|r 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 (78) Q Consensus 3 ~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~ 57 (78) .-|.|+-..-.||||||+-+... |. ..||+...-..+ .|..+..++. T Consensus 39 ~~G~i~~~~i~rg~aFV~f~~~~----~A---~~Ai~~lng~~~-~g~~l~V~~a 85 (98) T d1wf2a_ 39 KYGKIVGCSVHKGFAFVQYVNER----NA---RAAVAGEDGRMI-AGQVLDINLA 85 (98) T ss_dssp TSSCEEEEEEETEEEEEEESSHH----HH---HHHHHTTTTCEE-TTEECEEEET T ss_pred HCCCEEEEEEECCEEEEEECCHH----HH---HHHHHHCCCCEE-CCEEEEEEEC T ss_conf 26987999970886899979999----99---999998199989-9988799977 No 25 >d2nn6h1 b.40.4.5 (H:73-167) S1-domain of Ribosomal RNA-processing protein 4, RRP4 {Human (Homo sapiens) [TaxId: 9606]} Probab=33.26 E-value=16 Score=15.80 Aligned_cols=56 Identities=23% Similarity=0.157 Sum_probs=33.4 Q ss_pred CCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCC--------------CCCCCCCCEEEEEEEECCCCCC Q ss_conf 7762775146887465885488778837999950002358--------------8446899889999998699971 Q gi|254780913|r 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG--------------LFNLTEGQLVTYDYVQNDANGK 64 (78) Q Consensus 3 ~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g--------------~~~l~~G~~V~F~i~~~~~~gk 64 (78) -.|+|.--. .||+... .....|-|+|+|.+.... ...+.+||.|...+..-++.|+ T Consensus 12 V~G~V~~v~---~~g~~V~---I~~~~~g~l~is~i~~~~~~~rr~~~~~~~~~~~~~~~Gd~V~~kV~~v~~dg~ 81 (95) T d2nn6h1 12 VVGRITEVQ---QKRWKVE---TNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEVQAVFSDGA 81 (95) T ss_dssp CCEEEEEEE---TTEEEEE---CSSSSCEEEESSCCC-------------CHHHHHHSCSSCEECCEEEEEETTTE T ss_pred EEEEEEEEE---CCCEEEE---ECCCCEEEEEHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEEEEECCCCC T ss_conf 999999995---6709999---089913899877835666621114411233333210446589999999999998 No 26 >d2c35b1 b.40.4.5 (B:78-171) C-terminal domain of RNA polymerase II subunit RBP7 (RpoE) {Human (Homo sapiens) [TaxId: 9606]} Probab=30.49 E-value=17 Score=15.53 Aligned_cols=48 Identities=15% Similarity=0.219 Sum_probs=30.8 Q ss_pred CCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCC-C---------------CCCCCCCEEEEEEEE Q ss_conf 762775146887465885488778837999950002358-8---------------446899889999998 Q gi|254780913|r 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-L---------------FNLTEGQLVTYDYVQ 58 (78) Q Consensus 4 ~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g-~---------------~~l~~G~~V~F~i~~ 58 (78) .|+|+--+ -||+-..- +.-|.|+|.+.+...- + +.+..|+.|.+.+.. T Consensus 9 ~g~V~~v~---~~G~fv~l----g~~~~~v~~~~l~~d~~y~~~~~~~~~~~~~~~~~~~~Gd~VrvkV~~ 72 (94) T d2c35b1 9 DAVVTQVN---KVGLFTEI----GPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVG 72 (94) T ss_dssp EEEEEEEE---TTEEEEEE----TTEEEEEEGGGSCTTEEEESSSSSCEEEETTSCSEEETTCEEEEEEEE T ss_pred EEEEEEEE---EEEEEEEE----CCCEEEEEHHHCCCCEEECCCCCCEEEECCCCEEEEECCCEEEEEEEE T ss_conf 99999897---04899995----273688871466853266543353289726650899589989999999 No 27 >d2vnud1 b.40.4.5 (D:400-494) Exosome complex exonuclease RRP44 {Saccharomyces cerevisiae [TaxId: 4932]} Probab=29.20 E-value=18 Score=15.40 Aligned_cols=60 Identities=5% Similarity=-0.085 Sum_probs=40.2 Q ss_pred ECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCC-CCCCCEEEEECCCCCC Q ss_conf 4688746588548877883799995000235884468998899999986999-7111059996357889 Q gi|254780913|r 11 NPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN-GKYSAENLKLVPKSSN 78 (78) Q Consensus 11 n~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~~~-gk~~A~~v~~i~~~~~ 78 (78) +..+.|+|++|++.. =+++|+..+.. ..+ .|++|..++..=+.. ..+.+.-+++|...++ T Consensus 17 ~~~~~~~~v~P~d~r--ip~i~I~~~~~-----~~~-~g~~Vvv~I~~w~~~~~~P~G~i~~vLG~~gd 77 (95) T d2vnud1 17 SSSTQNVFVILMDKC--LPKVRIRTRRA-----AEL-LDKRIVISIDSWPTTHKYPLGHFVRDLGTIES 77 (95) T ss_dssp CCSCEEEEEEESSTT--SCCEEEEETTG-----GGG-TTEEEEEEEEECCTTCSSCEEEEEEEEEESSC T ss_pred CCCCCEEEEEECCCC--CCCEECCCCCH-----HHH-CCCEEEEEEEECCCCCCCCCEEEEEEECCCCC T ss_conf 787556999789987--78614360224-----675-89899999901588888977899997469898 No 28 >d2fura1 b.45.1.1 (A:16-208) Hypothetical protein Ta1372 {Thermoplasma acidophilum [TaxId: 2303]} Probab=28.82 E-value=13 Score=16.28 Aligned_cols=52 Identities=21% Similarity=0.333 Sum_probs=34.3 Q ss_pred CEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEEC Q ss_conf 6277514688746588548877883799995000235884468998899999986 Q gi|254780913|r 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 (78) Q Consensus 5 G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~ 59 (78) |++-..+ .|+=+++|-.-...+..+++|-+. .....+.|+.+.+|.|.+... T Consensus 19 ~~la~~~--~g~PyvvP~~f~~~~~~ly~H~a~-~g~k~~~l~~np~V~~~v~~~ 70 (193) T d2fura1 19 CTVSFID--GGIPYAIPMMLASEGKTIYLHGSM-KSRIYGILKTGQLIAISLLEI 70 (193) T ss_dssp EEEEEEE--TTEEEEEEEECEEETTEEEEEEET-TSHHHHHHHTTCCEEEEEEEE T ss_pred EEEEEEE--CCEEEEEEEEEEEECCEEEEEECC-CCHHHHHHHCCCCEEEEEEEC T ss_conf 9999961--994799999999917989998338-536899864499699999853 No 29 >d1uwva1 b.40.4.12 (A:15-74) rRNA (Uracil-5-)-methyltransferase RumA, N-terminal domain {Escherichia coli [TaxId: 562]} Probab=28.11 E-value=19 Score=15.29 Aligned_cols=55 Identities=15% Similarity=0.201 Sum_probs=36.0 Q ss_pred EEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEECCCCC Q ss_conf 277514688746588548877883799995000235884468998899999986999711105999635788 Q gi|254780913|r 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKSS 77 (78) Q Consensus 6 ~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~~~gk~~A~~v~~i~~~~ 77 (78) +|.-.+ ..|.|.-..| |.=+||.. .-+|++|...+... ++.-..|.-++++..|| T Consensus 6 ~I~~l~-~~G~Gv~r~~-----g~vvfV~~----------alPGE~V~v~i~~~-~~~~~~a~~~eil~~SP 60 (60) T d1uwva1 6 SVNDLD-SFGQGVARHN-----GKTLFIPG----------LLPQENAEVTVTED-KKQYARAKVVRRLSDSP 60 (60) T ss_dssp EEEEEC-TTSEEEEEET-----TEEEEEET----------CCTTCEEEEEEEEE-CSSEEEEEEEEECCCCT T ss_pred EEEECC-CCCCEEEEEC-----CEEEEECC----------CCCCCEEEEEEEEE-CCCEEEEEEEEEECCCC T ss_conf 999888-9976999999-----99999799----------99998999999996-09848999999913899 No 30 >d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]} Probab=27.27 E-value=19 Score=15.25 Aligned_cols=19 Identities=37% Similarity=0.651 Sum_probs=13.0 Q ss_pred CEEE--EEECCCCEEEEEECC Q ss_conf 6277--514688746588548 Q gi|254780913|r 5 GSIK--WYNPDKGYGFITPEG 23 (78) Q Consensus 5 G~VK--wfn~~kGfGFI~~d~ 23 (78) |.|+ ....+||||||.-+. T Consensus 43 G~i~~v~i~~~kg~afV~f~~ 63 (96) T d1x4ga1 43 GQIMEIRVFPEKGYSFVRFST 63 (96) T ss_dssp SCEEEEEEETTTTEEEEEESS T ss_pred CCCEEEEEEECCEEEEEEECC T ss_conf 996699997013089999899 No 31 >d1t9ha1 b.40.4.5 (A:1-67) Probable GTPase EngC (YjeQ), N-terminal domain {Bacillus subtilis [TaxId: 1423]} Probab=25.23 E-value=22 Score=14.99 Aligned_cols=64 Identities=17% Similarity=0.267 Sum_probs=33.9 Q ss_pred CCCCEE-EEEECCCCEEEEEECCCCCCCCEEEEEEEE-CCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEECCC Q ss_conf 877627-751468874658854887788379999500-02358844689988999999869997111059996357 Q gi|254780913|r 2 VHRGSI-KWYNPDKGYGFITPEGSTESGDDVFLHRSA-VASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 (78) Q Consensus 2 m~~G~V-Kwfn~~kGfGFI~~d~~~d~g~DvFvH~s~-i~~~g~~~l~~G~~V~F~i~~~~~~gk~~A~~v~~i~~ 75 (78) |.+|+| |.+ .+|=.+..|... +++-+-.+... ++..+.+.+ .||.|+|+.. + .+ .+.-.+++|. T Consensus 1 M~~G~Vik~~---~~~y~V~~e~~~-~g~~~~C~~RGk~r~~~~~p~-VGD~V~~~~~-~--~~--~g~I~~I~pR 66 (67) T d1t9ha1 1 MPEGKIIKAL---SGFYYVLDESED-SDKVIQCRGRGIFRKNKITPL-VGDYVVYQAE-N--DK--EGYLMEIKER 66 (67) T ss_dssp CCEEEEEEEE---TTEEEEEECSSS-SCEEEEEESCSSCCSCCCCCC-BTCEEEEECC-T--TS--CEEEEEECCC T ss_pred CCCEEEEEEE---CCEEEEEECCCC-CCCEEEEEECEEEECCCCCCC-CCCEEEEEEC-C--CC--EEEEEEEECC T ss_conf 9987999998---997999864568-996999997500805898657-0769999983-6--99--2999999268 No 32 >d2f3ga_ b.84.3.1 (A:) Glucose-specific factor III (glsIII) {Escherichia coli [TaxId: 562]} Probab=22.00 E-value=25 Score=14.63 Aligned_cols=45 Identities=24% Similarity=0.428 Sum_probs=27.9 Q ss_pred CCEEEEE-ECCCCEEEEEECCCCCCCCEEEEEEEE----CCCCCCC-CCCCCCEEE Q ss_conf 7627751-468874658854887788379999500----0235884-468998899 Q gi|254780913|r 4 RGSIKWY-NPDKGYGFITPEGSTESGDDVFLHRSA----VASAGLF-NLTEGQLVT 53 (78) Q Consensus 4 ~G~VKwf-n~~kGfGFI~~d~~~d~g~DvFvH~s~----i~~~g~~-~l~~G~~V~ 53 (78) .|+|.+- ...--||+-+ ++|-++++|+.. |...++. .+++||+|. T Consensus 46 dG~V~~v~~T~HAigi~t-----~~G~eiLIHiGidTV~L~G~gF~~~v~~Gd~V~ 96 (150) T d2f3ga_ 46 DGTIGKIFETNHAFSIES-----DSGVELFVHFGIDTVELKGEGFKRIAEEGQRVK 96 (150) T ss_dssp SEEEEEECTTSSEEEEEE-----TTSCEEEEECSBSGGGGTTTTEEECSCTTCEEC T ss_pred CEEEEEECCCCCEEEEEE-----CCCEEEEEEECCCHHHCCCCCEEEEECCCCEEC T ss_conf 879999877898999992-----893399999764554248841489956899988 No 33 >d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo sapiens) [TaxId: 9606]} Probab=20.19 E-value=18 Score=15.43 Aligned_cols=13 Identities=38% Similarity=0.652 Sum_probs=9.5 Q ss_pred ECCCCEEEEEECC Q ss_conf 4688746588548 Q gi|254780913|r 11 NPDKGYGFITPEG 23 (78) Q Consensus 11 n~~kGfGFI~~d~ 23 (78) ...||||||+-.. T Consensus 38 ~~~rG~~FV~f~~ 50 (75) T d1x0fa1 38 NKRRGFCFITFKE 50 (75) T ss_dssp CCTTCCEEEEESS T ss_pred CCCCCEEEEEECC T ss_conf 5665289999788 Done!