Query gi|254780914|ref|YP_003065327.1| hypothetical protein CLIBASIA_04065 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 408 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Tue May 31 22:05:36 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780914.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1mf7_A Integrin alpha M; cell 63.3 7.1 0.0003 17.9 5.4 50 345-394 136-190 (194) 2 2b2x_A Integrin alpha-1; compu 48.6 12 0.00051 16.2 8.7 78 303-394 125-212 (223) 3 1pt6_A Integrin alpha-1; X-RAY 44.6 14 0.00058 15.8 7.7 77 303-393 110-196 (213) 4 1shu_X Anthrax toxin receptor 43.6 14 0.00061 15.7 7.8 77 301-391 102-179 (182) 5 3gxb_A VON willebrand factor; 41.3 16 0.00065 15.5 4.9 49 344-394 127-175 (184) 6 1v7p_C Integrin alpha-2; snake 35.6 19 0.00079 14.9 4.3 51 344-394 136-196 (200) 7 3kp1_E D-ornithine aminomutase 27.5 12 0.00051 16.2 0.3 38 34-78 65-102 (121) 8 1n3y_A Integrin alpha-X; alpha 26.7 26 0.0011 13.8 5.2 78 303-393 111-193 (198) 9 3kmp_A SMAD1-MH1; protein-DNA 24.5 14 0.00059 15.8 0.2 12 223-234 111-122 (124) 10 1ozj_A SMAD 3; MAD homology do 23.9 15 0.00064 15.5 0.3 16 220-235 116-131 (144) 11 1v9v_A KIAA0561 protein; helix 23.6 30 0.0012 13.5 2.1 39 49-88 10-49 (114) 12 1rrk_A Complement factor B; BB 22.9 31 0.0013 13.3 5.3 11 190-200 249-259 (497) 13 2v6z_M DNA polymerase epsilon 22.5 30 0.0013 13.4 1.6 18 315-332 81-98 (99) No 1 >1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 1n9z_A 1bhq_1 1bho_1 1idn_1 Probab=63.30 E-value=7.1 Score=17.86 Aligned_cols=50 Identities=20% Similarity=0.406 Sum_probs=36.3 Q ss_pred EEEEEEEECCCCCCH---HHHHHHHCCCCHH--EEEECCCCCHHHHHHHHHHHHH Q ss_conf 168997404887420---2678763059032--0442587653447898777778 Q gi|254780914|r 345 AITIFSVGFSPDQDT---RYTLRQCASDPSK--YYEINSDENVMPIAKSLARNVI 394 (408) Q Consensus 345 aitifsvgfspdqdt---rytlrqcasdpsk--yyeinsdenvmpiakslarnvi 394 (408) .|++|.||+..+-.. .-.|+.+|++|+. .|.+.+-+..-.+.+.+++... T Consensus 136 gv~v~~Vgi~~~~~~~~~~~~L~~iAs~~~~~~~~~v~~~~~L~~~~~~l~~~i~ 190 (194) T 1mf7_A 136 GVIRYVIGVGDAFRSEKSRQELNTIASKPPRDHVFQVNNFEALKTIQNQLREKIF 190 (194) T ss_dssp TEEEEEEEESGGGCSHHHHHHHHHHSCSSHHHHEEEESSGGGGGGGHHHHHHHHH T ss_pred CCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHC T ss_conf 9999999978876663469999998669986608994999999999999987641 No 2 >2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune system; 2.20A {Rattus norvegicus} SCOP: c.62.1.1 Probab=48.59 E-value=12 Score=16.22 Aligned_cols=78 Identities=22% Similarity=0.522 Sum_probs=49.6 Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCHH--------HHHHHHCCCCHH-- Q ss_conf 7079999734510033302899999999859988751147641689974048874202--------678763059032-- Q gi|254780914|r 303 NKYMLMLAIGNQLSRSSVEKEKIEKVLQDCHYMHKRHRTGRDAITIFSVGFSPDQDTR--------YTLRQCASDPSK-- 372 (408) Q Consensus 303 nkymlmlaignqlsrssvekekiekvlqdchymhkrhrtgrdaitifsvgfspdqdtr--------ytlrqcasdpsk-- 372 (408) .|.++++.-|. +.. ...++.+.+... ...|+||.||..++-+.. -.|++-||+|+. T Consensus 125 ~kvlillTDG~--~~d---~~~~~~~a~~lk---------~~gi~v~~Igvg~~~~~~~~~~~~~~~eL~~IAs~p~~~~ 190 (223) T 2b2x_A 125 KKVMVIVTDGE--SHD---NYRLKQVIQDCE---------DENIQRFSIAILGHYNRGNLSTEKFVEEIKSIASEPTEKH 190 (223) T ss_dssp EEEEEEEESSC--CTT---GGGHHHHHHHHH---------TTTEEEEEEEECGGGC---CCCHHHHHHHHTTSCSSGGGT T ss_pred CEEEEEEECCC--CCC---CHHHHHHHHHHH---------HCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCC T ss_conf 25799982698--788---312999999998---------7599899999846666443244236999999866998551 Q ss_pred EEEECCCCCHHHHHHHHHHHHH Q ss_conf 0442587653447898777778 Q gi|254780914|r 373 YYEINSDENVMPIAKSLARNVI 394 (408) Q Consensus 373 yyeinsdenvmpiakslarnvi 394 (408) .|.+.+-+....+.+.|+..+. T Consensus 191 ~f~~~d~~~L~~i~~~l~~~ic 212 (223) T 2b2x_A 191 FFNVSDELALVTIVKALGERIF 212 (223) T ss_dssp EEEESSTTGGGGGHHHHHTTTC T ss_pred EEECCCHHHHHHHHHHHHHHHC T ss_conf 8981899999999999998864 No 3 >1pt6_A Integrin alpha-1; X-RAY diffraction, cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A Probab=44.59 E-value=14 Score=15.80 Aligned_cols=77 Identities=22% Similarity=0.534 Sum_probs=48.9 Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCH--------HHHHHHHCCCCHH-- Q ss_conf 707999973451003330289999999985998875114764168997404887420--------2678763059032-- Q gi|254780914|r 303 NKYMLMLAIGNQLSRSSVEKEKIEKVLQDCHYMHKRHRTGRDAITIFSVGFSPDQDT--------RYTLRQCASDPSK-- 372 (408) Q Consensus 303 nkymlmlaignqlsrssvekekiekvlqdchymhkrhrtgrdaitifsvgfspdqdt--------rytlrqcasdpsk-- 372 (408) .|.++++.=|.- .. ...++...+... ...|++|.||..++-+. .-.|+..||+|+. T Consensus 110 ~k~villTDG~~--~d---~~~~~~~~~~lk---------~~gi~v~~Vgvg~~~~~~~~~~~~~~~eL~~iAs~p~~~~ 175 (213) T 1pt6_A 110 KKVMVIVTDGES--HD---NHRLKKVIQDCE---------DENIQRFSIAILGSYNRGNLSTEKFVEEIKSIASEPTEKH 175 (213) T ss_dssp EEEEEEEESSCC--SC---SHHHHHHHHHHH---------HTTEEEEEEEECHHHHHTTCCCHHHHHHHHHHSCSSHHHH T ss_pred EEEEEEEECCCC--CC---CHHHHHHHHHHH---------HCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCE T ss_conf 689999846987--88---415999999999---------8899999999747655454333246999999866998540 Q ss_pred EEEECCCCCHHHHHHHHHHHH Q ss_conf 044258765344789877777 Q gi|254780914|r 373 YYEINSDENVMPIAKSLARNV 393 (408) Q Consensus 373 yyeinsdenvmpiakslarnv 393 (408) +|.+.+.+....|.+.|...+ T Consensus 176 ~f~~~~~~~L~~i~~~l~~~i 196 (213) T 1pt6_A 176 FFNVSDELALVTIVKTLGERI 196 (213) T ss_dssp EEEESSGGGGGGGHHHHHHHH T ss_pred EEEECCHHHHHHHHHHHHHHH T ss_conf 898089999999999999997 No 4 >1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y* Probab=43.55 E-value=14 Score=15.69 Aligned_cols=77 Identities=14% Similarity=0.200 Sum_probs=42.3 Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCHHHHHHHHCCCCHHEEEECCC- Q ss_conf 6770799997345100333028999999998599887511476416899740488742026787630590320442587- Q gi|254780914|r 301 SQNKYMLMLAIGNQLSRSSVEKEKIEKVLQDCHYMHKRHRTGRDAITIFSVGFSPDQDTRYTLRQCASDPSKYYEINSD- 379 (408) Q Consensus 301 sqnkymlmlaignqlsrssvekekiekvlqdchymhkrhrtgrdaitifsvgfspdqdtrytlrqcasdpskyyeinsd- 379 (408) ..++.++++.-|..-+..+...++..+. +++ ..|.+|.||+... | .-.|++.|++|...|...++ T Consensus 102 ~~~~~ivllTDG~~~~~~~~~~~~~a~~------l~~------~gv~v~~Vgig~~-~-~~~L~~ia~~~~~~~~~~~~~ 167 (182) T 1shu_X 102 KTSSIIIALTDGKLDGLVPSYAEKEAKI------SRS------LGASVYCVGVLDF-E-QAQLERIADSKEQVFPVKGGF 167 (182) T ss_dssp GSCEEEEEEECCCCCTTHHHHHHHHHHH------HHH------TTCEEEEEECSSC-C-HHHHHHHSSSGGGEEESSSTT T ss_pred CCCEEEEEEECCCCCCCCCHHHHHHHHH------HHH------CCCEEEEEEECCC-C-HHHHHHHHCCCCCEEEECCCH T ss_conf 8855999997288788864899999999------997------8999999984754-8-999999858999669934999 Q ss_pred CCHHHHHHHHHH Q ss_conf 653447898777 Q gi|254780914|r 380 ENVMPIAKSLAR 391 (408) Q Consensus 380 envmpiakslar 391 (408) +..-.+.+.+++ T Consensus 168 ~~L~~~~~~i~~ 179 (182) T 1shu_X 168 QALKGIINSILA 179 (182) T ss_dssp HHHHHHHHHHHH T ss_pred HHHHHHHHHHHH T ss_conf 999999999986 No 5 >3gxb_A VON willebrand factor; VWA-like fold, blood coagulation, cell adhesion, cleavage on PAIR of basic residues, disease mutation, disulfide bond; HET: NAG; 1.90A {Homo sapiens} Probab=41.27 E-value=16 Score=15.45 Aligned_cols=49 Identities=18% Similarity=0.251 Sum_probs=33.6 Q ss_pred CEEEEEEEECCCCCCHHHHHHHHCCCCHHEEEECCCCCHHHHHHHHHHHHH Q ss_conf 416899740488742026787630590320442587653447898777778 Q gi|254780914|r 344 DAITIFSVGFSPDQDTRYTLRQCASDPSKYYEINSDENVMPIAKSLARNVI 394 (408) Q Consensus 344 daitifsvgfspdqdtrytlrqcasdpskyyeinsdenvmpiakslarnvi 394 (408) ..|+||.||..++-|.. .|+..|+ |++++.+++-+..-.+...+...+. T Consensus 127 ~gi~i~~vgvG~~~~~~-~L~~ia~-~~~~~~~~~~~~L~~~~~~l~~~~c 175 (184) T 3gxb_A 127 GDIQVVPIGVGPNANVQ-ELERIGW-PNAPILIQDFETLPREAPDLVLQRC 175 (184) T ss_dssp TTEEEEEEEESTTSCHH-HHHHHHT-TSCCEEESCTTTHHHHHHHHHHHHH T ss_pred CCCEEEEEECCCCCCHH-HHHHHCC-CCCEEEECCHHHHHHHHHHHHHHHC T ss_conf 89989999846747999-9998739-9977994899999999999997546 No 6 >1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhesion, glycoprotein, toxin/cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A Probab=35.60 E-value=19 Score=14.85 Aligned_cols=51 Identities=16% Similarity=0.347 Sum_probs=35.5 Q ss_pred CEEEEEEEECCCCCCH--------HHHHHHHCCCCHH--EEEECCCCCHHHHHHHHHHHHH Q ss_conf 4168997404887420--------2678763059032--0442587653447898777778 Q gi|254780914|r 344 DAITIFSVGFSPDQDT--------RYTLRQCASDPSK--YYEINSDENVMPIAKSLARNVI 394 (408) Q Consensus 344 daitifsvgfspdqdt--------rytlrqcasdpsk--yyeinsdenvmpiakslarnvi 394 (408) ..|.+|.||..+..+. .-.|+..||+|+. .|.+.+-+....+.+.|++.+. T Consensus 136 ~gi~i~~Igvg~~~~~~~~~~~~~~~eL~~iAs~p~~~~~f~~~d~~~L~~~~~~l~~~ic 196 (200) T 1v7p_C 136 DNILRFGIAVLGYLNRNALDTKNLIKEIKAIASIPTERYFFNVSDEAALLEKAGTLGEQIF 196 (200) T ss_dssp TTEEEEEEEECHHHHHTTCCCHHHHHHHHHHSCSSHHHHEEEESSSGGGHHHHHHHHHHHH T ss_pred CCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHH T ss_conf 8909999997774455654431259999998669986139993899999999999997720 No 7 >3kp1_E D-ornithine aminomutase S component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_E* 3koy_E* 3koz_E* 3kp0_E* 3kox_E* Probab=27.54 E-value=12 Score=16.21 Aligned_cols=38 Identities=37% Similarity=0.575 Sum_probs=27.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCHH Q ss_conf 999999876677776667899998776520683323667741223 Q gi|254780914|r 34 VAIVDVVVDQVTVMQKTAWLQEVLDHVIYRTSPKNLYDLREAGRD 78 (408) Q Consensus 34 vaivdvvvdqvtvmqktawlqevldhviyrtspknlydlreagrd 78 (408) -+||+-|++. ..|.|-| .|+.||-+.+.--++||||+. T Consensus 65 k~iVe~v~~~-gLlgKGA------GhvV~k~ak~~~i~i~eAG~~ 102 (121) T 3kp1_E 65 KAIVDKTMDR-GLMGKGA------GHIVYKIAKEKNISVREAGLA 102 (121) T ss_dssp HHHHHHHHHT-TCGGGCH------HHHHHHHHHHTTCCHHHHHHH T ss_pred HHHHHHHHHH-CCCCCCC------CHHHHHHHHHCCCCHHHHHHH T ss_conf 9999999980-5445775------532235797629988999999 No 8 >1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1 Probab=26.70 E-value=26 Score=13.84 Aligned_cols=78 Identities=17% Similarity=0.322 Sum_probs=43.0 Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCH---HHHHHHHCCCCHH--EEEEC Q ss_conf 707999973451003330289999999985998875114764168997404887420---2678763059032--04425 Q gi|254780914|r 303 NKYMLMLAIGNQLSRSSVEKEKIEKVLQDCHYMHKRHRTGRDAITIFSVGFSPDQDT---RYTLRQCASDPSK--YYEIN 377 (408) Q Consensus 303 nkymlmlaignqlsrssvekekiekvlqdchymhkrhrtgrdaitifsvgfspdqdt---rytlrqcasdpsk--yyein 377 (408) .|.++++.-|..- .+..+-+. +.+.+. .-.+.+|.+|..++.+. .-.|+..|+.|+. ++.++ T Consensus 111 ~kvivlltDG~~~-~~~~~~~~---~~~~~~---------~~gv~i~~Ig~g~~~~~~~~~~~L~~ias~~~~~~~~~~~ 177 (198) T 1n3y_A 111 AKILIVITDGKKE-GDSLDYKD---VIPMAD---------AAGIIRYAIGVGLAFQNRNSWKELNDIASKPSQEHIFKVE 177 (198) T ss_dssp EEEEEEEESSCCB-SCSSCHHH---HHHHHH---------HTTCEEEEEEESGGGGSSTTHHHHHHHSCSSSGGGEEEES T ss_pred CCEEEEEECCCCC-CCCCCHHH---HHHHHH---------HCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCEEEEEC T ss_conf 4259999358988-87205999---999999---------7898899999787667753499999986699865199929 Q ss_pred CCCCHHHHHHHHHHHH Q ss_conf 8765344789877777 Q gi|254780914|r 378 SDENVMPIAKSLARNV 393 (408) Q Consensus 378 sdenvmpiakslarnv 393 (408) +-+..-.+.+.+.+.+ T Consensus 178 ~~~~L~~i~~~l~~~i 193 (198) T 1n3y_A 178 DFDALKDIQNQLKEKI 193 (198) T ss_dssp SGGGGGGGHHHHHHHH T ss_pred CHHHHHHHHHHHHHHH T ss_conf 9999999999999873 No 9 >3kmp_A SMAD1-MH1; protein-DNA complex, SMAD1, SBE DNA, MH1 domain, beta hairpin, nucleus, transcription; 2.70A {Mus musculus} Probab=24.50 E-value=14 Score=15.75 Aligned_cols=12 Identities=42% Similarity=1.301 Sum_probs=10.0 Q ss_pred CEECCCCHHHHH Q ss_conf 200272023443 Q gi|254780914|r 223 NFCMAPYHYSSI 234 (408) Q Consensus 223 nfcmapyhyssi 234 (408) ..|.-|||||-| T Consensus 111 ~VC~NPyHy~Rv 122 (124) T 3kmp_A 111 EVCINPYHYKRV 122 (124) T ss_dssp EEECCGGGEEEC T ss_pred CEEECCCCHHHC T ss_conf 288687226540 No 10 >1ozj_A SMAD 3; MAD homology domain 1, DNA recognition, TGF-beta signaling, zinc-binding module, transcription/DNA complex; 2.40A {Homo sapiens} SCOP: d.164.1.1 PDB: 1mhd_A* Probab=23.87 E-value=15 Score=15.50 Aligned_cols=16 Identities=31% Similarity=0.856 Sum_probs=11.8 Q ss_pred CCCCEECCCCHHHHHH Q ss_conf 7432002720234434 Q gi|254780914|r 220 PYKNFCMAPYHYSSIL 235 (408) Q Consensus 220 pyknfcmapyhyssil 235 (408) -+...|.-||||+-+- T Consensus 116 ~~~~VC~NPYHy~Rv~ 131 (144) T 1ozj_A 116 KKDEVCVNPYHYQRVE 131 (144) T ss_dssp CCSEEECCGGGEEECC T ss_pred CCCEEEECCCHHHHCC T ss_conf 9981883840263412 No 11 >1v9v_A KIAA0561 protein; helix bundle, MAST205, microtubule-associated serine/threonine protein kinase, structural genomics; NMR {Homo sapiens} SCOP: a.29.10.1 Probab=23.63 E-value=30 Score=13.45 Aligned_cols=39 Identities=33% Similarity=0.381 Sum_probs=27.4 Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHH-HHH Q ss_conf 6678999987765206833236677412235789999-987 Q gi|254780914|r 49 KTAWLQEVLDHVIYRTSPKNLYDLREAGRDNFIRHQI-EKA 88 (408) Q Consensus 49 ktawlqevldhviyrtspknlydlreagrdnfirhqi-eka 88 (408) .||-..|-|.+.|-.-+|.+...+. .|--+|+.||| |-| T Consensus 10 AtaQMEerL~~fi~~~~~~~~~~la-Dgvl~FvhHQiiElA 49 (114) T 1v9v_A 10 ATAQMEGRLQEFLTAYAPGARLALA-DGVLGFIHHQIVELA 49 (114) T ss_dssp TTHHHHHHHHHHHHHSCBTTTBCCS-CHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHCCCCCCCCHH-HHHHHHHHHHHHHHH T ss_conf 1899999999999976962344113-889999999999999 No 12 >1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A Probab=22.87 E-value=31 Score=13.35 Aligned_cols=11 Identities=27% Similarity=0.123 Sum_probs=3.6 Q ss_pred CCCCHHCCHHH Q ss_conf 38710102778 Q gi|254780914|r 190 VHPPKYLEYSH 200 (408) Q Consensus 190 vhppkyleysh 200 (408) ++|---|--.| T Consensus 249 Is~~~VLTAAh 259 (497) T 1rrk_A 249 VSEYFVLTAAH 259 (497) T ss_dssp CSSSEEEECGG T ss_pred EECCEEEECCE T ss_conf 74999996912 No 13 >2v6z_M DNA polymerase epsilon subunit 2; DNA replication, DPOE2, transferase, AAA protein family; HET: DNA; NMR {Homo sapiens} Probab=22.51 E-value=30 Score=13.40 Aligned_cols=18 Identities=28% Similarity=0.503 Sum_probs=9.8 Q ss_pred CCHHHHHHHHHHHHHHHH Q ss_conf 003330289999999985 Q gi|254780914|r 315 LSRSSVEKEKIEKVLQDC 332 (408) Q Consensus 315 lsrssvekekiekvlqdc 332 (408) |+-+-||++-||+.+|+| T Consensus 81 LsS~~Iek~~iE~AVkEC 98 (99) T 2v6z_M 81 LSSNMIERSVVEAAVQES 98 (99) T ss_dssp CSSSEECHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHHC T ss_conf 980151399999999863 Done!