RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780914|ref|YP_003065327.1| hypothetical protein
CLIBASIA_04065 [Candidatus Liberibacter asiaticus str. psy62]
         (408 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 42.6 bits (100), Expect = 1e-04
 Identities = 76/525 (14%), Positives = 141/525 (26%), Gaps = 209/525 (39%)

Query: 7   FLLGVL-RLKKCTRGVFLVITAILL----SSFVAIVDV--VV------DQVTVMQKTAWL 53
           FL  V   ++    G F  +  + L    + ++   D+  +       +  T+++    +
Sbjct: 64  FLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELI 123

Query: 54  QEVLDHVIYRTSPKNLYDLREAGRDNFIRHQIEKAL----NTYNSRDLSNI----GSIES 105
                        KN    R   +      +   AL       N++ L  I    G+ + 
Sbjct: 124 -------------KNYITARIMAKRP-FDKKSNSALFRAVGEGNAQ-LVAIFGGQGNTDD 168

Query: 106 IVKDAVILTKNVNSLPLQFTVDIALSTTVQLRGSLLQMFSQSKGKVDISRRKKVMYKQNI 165
             ++   L +  + L         +   ++     L    +          +K ++ Q  
Sbjct: 169 YFEELRDLYQTYHVL---------VGDLIKFSAETLSELIR-----TTLDAEK-VFTQ-- 211

Query: 166 GLMIMPFAWDGYWLASRGKVADSKVHPPKYL-------------EYSHYYQ--QYLNRNT 210
           GL I+       WL +     D       YL             + +HY    + L    
Sbjct: 212 GLNILE------WLENPSNTPDKD-----YLLSIPISCPLIGVIQLAHYVVTAKLLGFT- 259

Query: 211 LVKNFLSQIPYKNFCMAPYHYSSILYWAVGTLTYSVDNKTTTREYYKDPYYATWDHFPYS 270
                 S         A  H   ++           D               +W+ F  S
Sbjct: 260 -PGELRS-----YLKGATGHSQGLV---TAVAIAETD---------------SWESFFVS 295

Query: 271 FIKNVFDMTSNQFGDGQVL----TNTNHCFPHGASQNKYML-------------MLAIGN 313
             K +            VL          +P+ +     +L             ML+I N
Sbjct: 296 VRKAI-----------TVLFFIGVRCYEAYPNTSLPPS-ILEDSLENNEGVPSPMLSISN 343

Query: 314 QLSRSSVEKEKIEKVLQDCHYMHKRH-----RTGRDAITI----FS-VGFS--------- 354
            L++  V+   + K   + H    +        G   + +     S  G +         
Sbjct: 344 -LTQEQVQDY-VNKT--NSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAP 399

Query: 355 --PDQDTR--YTLRQCA--------SDP--SKYYE-----INSD---ENVMPIAKSLA-- 390
              DQ +R  ++ R+          + P  S         IN D    NV   AK +   
Sbjct: 400 SGLDQ-SRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIP 458

Query: 391 ----------RNV-----------IT----NW--FSQFTIT-VVD 407
                     R +           I      W   +QF  T ++D
Sbjct: 459 VYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILD 503



 Score = 39.9 bits (93), Expect = 0.001
 Identities = 23/148 (15%), Positives = 43/148 (29%), Gaps = 67/148 (45%)

Query: 5   KNF--------LLGV---LRLKKCTRGV-----------------FLVITAILLSSFVAI 36
           KN         L G+   LR  K   G+                 FL + +   S  +  
Sbjct: 375 KNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVP 434

Query: 37  VDVVVDQVTVMQKTAWLQEVLDHVIYRTSPKNL----YDLREAGRDNFIRHQIEKALNTY 92
                D +         ++++ + +   + K++    YD                   T+
Sbjct: 435 A---SDLI--------NKDLVKNNV-SFNAKDIQIPVYD-------------------TF 463

Query: 93  NSRDLSNIGSIESIVKDAV--ILTKNVN 118
           +  DL  +    SI +  V  I+   V 
Sbjct: 464 DGSDLRVLS--GSISERIVDCIIRLPVK 489



 Score = 39.2 bits (91), Expect = 0.002
 Identities = 53/353 (15%), Positives = 100/353 (28%), Gaps = 158/353 (44%)

Query: 89  LNTYNSRDLS-NIGSIE-SIVKDAVILTKNVNSLP--LQFTVDIALSTTVQLRGSLLQMF 144
           ++ Y++R L+ + GS+E  +             +P    F          QL+      F
Sbjct: 1   MDAYSTRPLTLSHGSLEHVL------------LVPTASFFIAS-------QLQEQ----F 37

Query: 145 SQSKGKVDISRRKKVMYKQNIGLMIMPFAWDGYW----------LASR--GKVADSKVHP 192
           ++                       +P   +G+           L  +  G V+   V P
Sbjct: 38  NKI----------------------LPEPTEGFAADDEPTTPAELVGKFLGYVSS-LVEP 74

Query: 193 PKYLEYS--------HYYQQYLNRN---TLVKNFLSQIP------------YKNFCMA-- 227
            K  ++          +   YL  N    L    L +              Y    +   
Sbjct: 75  SKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAK 134

Query: 228 ---PYHYSSILYWAVGT----LTYSVDN-KTTTREYYKD--PYYATWDHFPY-SFIKNVF 276
                  +S L+ AVG     L  ++   +  T +Y+++    Y T     Y   + ++ 
Sbjct: 135 RPFDKKSNSALFRAVGEGNAQL-VAIFGGQGNTDDYFEELRDLYQT-----YHVLVGDLI 188

Query: 277 DMTSNQFGDGQVLT----NTNHCFPHG----------ASQ--NKYMLMLA-----IGNQL 315
             ++        L     +    F  G          ++     Y+L +      IG   
Sbjct: 189 KFSAETL---SELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIG--- 242

Query: 316 SRSSVEKEKIEKVLQDCHYMHKRHRTGRDAITIFSVGFSPDQDTRYTLRQCAS 368
                       V+Q  HY+          +T   +GF+P +     LR    
Sbjct: 243 ------------VIQLAHYV----------VTAKLLGFTPGE-----LRSYLK 268



 Score = 27.6 bits (61), Expect = 5.0
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 16/63 (25%)

Query: 40   VVDQVTVMQKTAWLQEVLDHVIYRTSPKNLYDLREAGRD------NFIRHQ------IEK 87
            VV++V   ++T WL E++++ +         DLR    D      NFI+ Q      ++K
Sbjct: 1829 VVERVG--KRTGWLVEIVNYNVENQQYVAAGDLR--ALDTVTNVLNFIKLQKIDIIELQK 1884

Query: 88   ALN 90
            +L+
Sbjct: 1885 SLS 1887


>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A
           {Homo sapiens} SCOP: c.62.1.1
          Length = 198

 Score = 29.8 bits (66), Expect = 1.2
 Identities = 15/162 (9%), Positives = 44/162 (27%), Gaps = 19/162 (11%)

Query: 239 VGTLTYSVDNKTTTREYYKDPYYATWDHFPYSFIKNVFDMTSNQFGDGQVLTNTNHCFPH 298
              + +S   +     +  + +  + +      + +V  +    +    +    +  F  
Sbjct: 48  FSLMQFSNKFQ---THFTFEEFRRSSNPLS--LLASVHQLQGFTYTATAIQNVVHRLFHA 102

Query: 299 GASQNKYMLMLAIGNQLSRSSVEKEKIEKVLQDCHYMHKRHRTGRDAITIFSVGFSPDQD 358
                +    + I     +   +    + V+                I  +++G      
Sbjct: 103 SYGARRDAAKILIVITDGKKEGDSLDYKDVIPMADAAG---------IIRYAIGVGLAFQ 153

Query: 359 TRY---TLRQCASDPS--KYYEINSDENVMPIAKSLARNVIT 395
            R     L   AS PS    +++   + +  I   L   +  
Sbjct: 154 NRNSWKELNDIASKPSQEHIFKVEDFDALKDIQNQLKEKIFA 195


>3dra_B Geranylgeranyltransferase type I beta subunit;
           geranylgeranyltrasferase, ggtase, ggtase-I, PGGT,
           prenyltransferase, farnesyltransferase; HET: B3P GRG;
           1.80A {Candida albicans}
          Length = 390

 Score = 29.3 bits (65), Expect = 1.7
 Identities = 18/124 (14%), Positives = 38/124 (30%), Gaps = 10/124 (8%)

Query: 212 VKNFLSQIPYKNFCMAPYHYSSILYWAVGTLT--YSVDNKTTTREYYKDPYYATWDHFPY 269
               L  +P         +  +I+Y+ +  L              YY++     +     
Sbjct: 13  FNRCLIGLPST-AQSEDSNKLAIIYFCLHGLQLIQKFQFTNQELIYYRNFIINQFMIENN 71

Query: 270 SFIKNVFDMTSNQFGDGQVLTNTNHCFPHGASQNKYMLMLAIGNQLSRSSVEKEKIEKVL 329
             I      +++ F       N  +  P+ +S    +  L I      + + ++KI   L
Sbjct: 72  QIISFR---STHYFQKT----NQKYDCPNLSSTLFALYNLLILKSPYHTIINRKKIMNFL 124

Query: 330 QDCH 333
             C 
Sbjct: 125 CKCQ 128


>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting;
           1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A
           1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A
           1u0o_C
          Length = 202

 Score = 28.7 bits (63), Expect = 2.7
 Identities = 6/65 (9%), Positives = 22/65 (33%), Gaps = 5/65 (7%)

Query: 331 DCHYMHKRHRTGRDAITIFSVGFSPDQDTRYTLRQCASDPS--KYYEINSDENVMPIAKS 388
           +     +  +  +  + +  VG  P  + +  +R         K + ++S + +      
Sbjct: 134 NFVRYVQGLK--KKKVIVIPVGIGPHANLK-QIRLIEKQAPENKAFVLSSVDELEQQRDE 190

Query: 389 LARNV 393
           +   +
Sbjct: 191 IVSYL 195


>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction,
           adhesion, structural protein; HET: NAG NDG; 30.00A {Mus
           musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
          Length = 880

 Score = 27.1 bits (59), Expect = 7.9
 Identities = 8/47 (17%), Positives = 22/47 (46%), Gaps = 3/47 (6%)

Query: 360 RYTLRQCASDPSKYYEINSDENVMPIAKSLARNVITNWFSQFTITVV 406
            Y +    +DP+++  +N D  ++    +L R       + +T+ ++
Sbjct: 523 SYFI---GNDPARWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIML 566


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.321    0.134    0.402 

Gapped
Lambda     K      H
   0.267   0.0558    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 3,482,472
Number of extensions: 157369
Number of successful extensions: 437
Number of sequences better than 10.0: 1
Number of HSP's gapped: 434
Number of HSP's successfully gapped: 19
Length of query: 408
Length of database: 5,693,230
Length adjustment: 95
Effective length of query: 313
Effective length of database: 3,390,050
Effective search space: 1061085650
Effective search space used: 1061085650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.5 bits)