>cd06457 M3A_MIP Peptidase M3 mitochondrial intermediate peptidase (MIP; EC 3.4.24.59) belongs to the widespread subfamily M3A, that show similarity to the Thimet oligopeptidase (TOP). It is one of three peptidases responsible for the proteolytic processing of both, nuclear and mitochondrial encoded precursor polypeptides targeted to the various subcompartments of the mitochondria. It cleaves intermediate-size proteins initially processed by mitochondrial processing peptidase (MPP) to yield a processing intermediate with a typical N-terminal octapeptide that is sequentially cleaved by MIP to mature-size protein. MIP cleaves precursor proteins of respiratory components, including subunits of the electron transport chain and tri-carboxylic acid cycle enzymes, and components of the mitochondrial genetic machinery, including ribosomal proteins, translation factors, and proteins required for mitochondrial DNA metabolism. It has been suggested that the human MIP (HMIP polypeptide; gene symbo

Probab=100.00 E-value=0 Score=482.93 Aligned_cols=371 Identities=16% Similarity=0.151 Sum_probs=296.4 Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCC-CHHHHHHHHHHHHHCCH Q ss_conf 35418887679999999999865054216999999866678865427899988976222258-98999999998763062 Q gi|254780915|r 228 KSFFDSDREVRKSAAKALSHTFNKSSHIFSFITNTLAKDEEIQDRWRKYEKIADSRHLSNNV-EPYVIEALMQSVKNYYP 306 (626) Q Consensus 228 ~~l~~~dr~~Rk~a~~a~~~~~~~~~~~~a~il~~iv~~r~e~A~llGy~s~~~~~l~~~~~-~~~~~~~l~~~~~~~~~ 306 (626) T Consensus 2 vl~~~~n~~lR~~~y~a~~~----~~~~N~~~l~~il~lR~e~A~LLGf~syA~~~l~~kMa~sp~~V~~FL~~L~~~~~ 77 (458) T cd06457 2 LLASVPNESVRELVYRAFHS----SSAEQLELLEELLSSRAELAQLLGFESYAHRALRGKMAKNPENVMEFLTELSEKLR 77 (458) T ss_pred CCCCCCCHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHH T ss_conf 67769899999999998677----86217999999999999999985999899999998863899999999999999989 Q ss_pred HHHHHHHHHHH----HHCC--CCCCCHHHHHHCCC-----------CCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHH-- Q ss_conf 89999999999----8708--87531234440256-----------5547779989999999986666-328999999-- Q gi|254780915|r 307 KTSHRYYELKK----KWLK--LDTMYFWDRLAPLP-----------GTSQDIIPFEVARDLVLQSYAK-FSPQMSIIA-- 366 (626) Q Consensus 307 ~~~~~~~~~~~----~~lg--~~~l~~wD~~~~~~-----------~~~~~~~~~ee~~~~v~~~~~~-~~~e~~~~~-- 366 (626) T Consensus 78 ~~~~~E~~~L~~~~~~~~~~~~~~l~pWD~~yy~~k~r~~~~~~d~~~l~~YFpl~~vl~Glf~i~~~Lfgi~~~~~~~~ 157 (458) T cd06457 78 PRAEEELAVLRDMKRKVLGKPLSSLAPWDRDYYTGQYRQSRFDSEPSNLSPYFSLGTVMEGLSRLFSRLYGIRLVPVPLA 157 (458) T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHHHHHHCEEEEECCCC T ss_conf 99999999999999985489867678778999998888864368888883048289999999999999857456874678 Q ss_pred ------------------HHHHHCCCCCHHCCCCCCCCCCCCCCCCC--------------------CCCEEECCCCC-- Q ss_conf ------------------98642485020103799874354766677--------------------75101036533-- Q gi|254780915|r 367 ------------------EKFFTHNWIDAPQYDGKGSGAFAHGTIPS--------------------VHPYILLNYLG-- 406 (626) Q Consensus 367 ------------------~~~~~~~~iD~~~r~gKr~GA~~~~~~~~--------------------~~~~I~~N~~~-- 406 (626) T Consensus 158 ~~evWh~dV~~~~V~d~~~~~lG~~YlDl~~R~gK~~~aa~~~ir~~~~~~~~~~~~~~~~~~~~q~Pv~~lvcNf~~p~ 237 (458) T cd06457 158 PGEVWHPDVRKLDVVHEDEGLLGVIYCDLFSRPGKPPGAAHFTIRCSRRLDDDDVAERGGRGGTYQLPVVALMCNFPPPS 237 (458) T ss_pred CCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCCCCCEECCCCCEECCCCCCCCCCCCCCCEECCEEEEECCCCCCC T ss_conf 77676788359999935997799998525889988677721025432023741002223679855778789965688999 Q ss_pred -------CHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCHHHHHHHHHHHHHHHHH----------HHHHCCCCCHHHH Q ss_conf -------2467999999845899999612-568776578005999886888999999----------9984138998999 Q gi|254780915|r 407 -------KPQDVMTLAHELGHGIHFVLSS-ETQGILTNNSSLTLAETASIFGETLTF----------DSLLQAASSKEER 468 (626) Q Consensus 407 -------~~~dv~TL~HE~GHa~H~~ls~-~~~~~~~~~~~~~~aE~~S~~~E~~~~----------~~~~~~~~~~~~~ 468 (626) T Consensus 238 ~~~psLL~~~ev~TlFHEFGH~lH~lLs~~~y~~~sGt~v~~DfVE~PSql~E~w~~~~evL~~~a~Hy~Tgeplp~~l~ 317 (458) T cd06457 238 PSGPTLLSPHEVETLFHEMGHAMHSMLGRTEYQHVSGTRCATDFVEVPSILMEYFASDPRVLKLFARHYSTGEPLPEEML 317 (458) T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCHHHHHHHHHCCHHHHHHHHHCCCCCCCCCHHHH T ss_conf 99987366999999999872898875317775535577564046645199999985589999985121589994979999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCC Q ss_conf 99999986206999999999999999997212016899989999999999998607763458878885001525410667 Q gi|254780915|r 469 KILLANKIEDMLNSIVRQISFYDFELKLHTERRSTGDIPTHRINEIWLETQKESLGPAFDLSDLEYGSFWMMVPHFIESS 548 (626) Q Consensus 469 ~~ll~~~~~~~~~~~~~q~~~~~fe~~~h~~~~~~~~~t~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~w~~~~H~y~~~ 548 (626) T Consensus 318 ~~l~~a~~~~~g~~~~~ql~~al~Dl~lH~~~~~~~~----~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~F~Hl~gY~ 390 (458) T cd06457 318 ARLLASKNSFAALETQQQIVYALLDQELHGEQPLSPT----FTSDVLRDSTEIFYGL--PYV-PGGTAWQLRFGHLVGYG 390 (458) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC----CHHHHHHHHHHHHCCC--CCC-CCCCCCCCCCCCCCCCH T ss_conf 9999887662699999999999999998478966555----5699999999985488--889-99888777687631523 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCC--CHHHHHHHHH-HHHCCCCCCHHHHHHHC-CCCCCCHHHH Q ss_conf 525899999999999999999567--3328999999-98326999979999970-8898998899 Q gi|254780915|r 549 FYVYAYAFGNCLVNSLYDIYKSNT--VDCFKEKYLN-ILRAGNSKHYSELLLPL-NINLSDPNFW 609 (626) Q Consensus 549 fY~y~Y~~~~~~a~~l~~~~~~~~--~~~~~~~y~~-~L~~Ggs~~~~el~k~~-G~d~~~~~~~ 609 (626) T Consensus 391 AgYYsYlwsevlaad~f~~~f~~~~~~~~~G~~~R~~iL~~Ggs~~~~e~~~~FlGR~Psi~~~~ 455 (458) T cd06457 391 ATYYSYLFDRAIASKIWQKLFAADPLSREAGERLREELLKHGGGKDPWELLAGVLGKPPLVKGGA 455 (458) T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCC T ss_conf 41899999999999999999864999899999999986127898279999999659899887861

HHsearch alignment for GI: 254780915 and conserved domain: cd06457