HHsearch alignment for GI: 254780915 and conserved domain: cd06459

>cd06459 M3B_Oligoendopeptidase_F Peptidase family M3B Oligopeptidase F (PepF; Pz-peptidase B; EC 3.4.24.-) is mostly bacterial and includes oligoendopeptidase F from Lactococcus lactis. This enzyme hydrolyzes peptides containing between 7 and 17 amino acids with fairly broad specificity. The PepF gene is duplicated in L. lactis on the plasmid that bears it, while a shortened second copy is found in Bacillus subtilis. Most bacterial PepFs are cytoplasmic endopeptidases; however, the PepF Bacillus amyloliquefaciens oligopeptidase is a secreted protein and may facilitate the process of sporulation. Specifically, the yjbG gene encoding the homolog of the PepF1 and PepF2 oligoendopeptidases of Lactococcus lactis has been identified in Bacillus subtilis as an inhibitor of sporulation initiation when over expressed from a multicopy plasmid.
Probab=100.00  E-value=0  Score=708.90  Aligned_cols=423  Identities=35%  Similarity=0.562  Sum_probs=400.1

Q ss_pred             HHHHHCCCHHHHHHHHHHHHHHH--HHHCCCCCHHH-HHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             30010003677777764444332--21003475233-2135418887679999999999865054216999999866678
Q gi|254780915|r  192 DTSQVGREALKRFFCENIESLRF--KINDQKIPLTK-AYKSFFDSDREVRKSAAKALSHTFNKSSHIFSFITNTLAKDEE  268 (626)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~l~~~dr~~Rk~a~~a~~~~~~~~~~~~a~il~~iv~~r~  268 (626)
T Consensus         2 ~l~~~~~~a~~~~~~~~~~~~~~~~~~~G~~~~l~~~~~~~l~~~dr~~R~~A~~~~~~~~~~~~~~~a~il~~lv~~r~   81 (427)
T cd06459           2 KLSETGNSAWSEYYDLLNSDLKFIFEFDGEELTLSQNLSNLLESPDREVRKKAFEALYKAYEKYENTLAAILNTLVKLRL   81 (427)
T ss_pred             CCCCCCHHHHHHHHHHHHHCEEEEEEECCEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             98875599999999998742578984499787518999988659499999999999999999818999999999999999


Q ss_pred             HHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             86542789998897622225898999999998763062899999999998708875312344402565547779989999
Q gi|254780915|r  269 IQDRWRKYEKIADSRHLSNNVEPYVIEALMQSVKNYYPKTSHRYYELKKKWLKLDTMYFWDRLAPLPGTSQDIIPFEVAR  348 (626)
Q Consensus       269 e~A~llGy~s~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lg~~~l~~wD~~~~~~~~~~~~~~~ee~~  348 (626)
T Consensus        82 ~~a~~rgy~~~~~~~l~~~~~~~~v~~~l~~~~~~-~~p~~~ry~~~k~k~lg~~~l~~~D~~~p~~~~~~~~~~~~ea~  160 (427)
T cd06459          82 TLAKLRGYDSYLEAALFNNNIPEDVYDFLIAVVKE-NVPLLHRYLKLKKKLLGLDKLRPYDLYAPLVSGNPPKYTYEEAK  160 (427)
T ss_pred             HHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCHHHHH
T ss_conf             99998699989999867069869999999999999-57899999999999858850159881487888888868999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             99998666632899999998642485020103799874354766677751010365332467999999845899999612
Q gi|254780915|r  349 DLVLQSYAKFSPQMSIIAEKFFTHNWIDAPQYDGKGSGAFAHGTIPSVHPYILLNYLGKPQDVMTLAHELGHGIHFVLSS  428 (626)
Q Consensus       349 ~~v~~~~~~~~~e~~~~~~~~~~~~~iD~~~r~gKr~GA~~~~~~~~~~~~I~~N~~~~~~dv~TL~HE~GHa~H~~ls~  428 (626)
T Consensus       161 ~~v~~~~~~~~~e~~~~~~~~~~~~wiD~~~r~gKr~Gay~~~~~~~~~p~IlmN~~gt~~dv~TLaHElGHa~H~~l~~  240 (427)
T cd06459         161 ELVLEALSPLGPEYAEFAKRAFEERWIDVEPRKGKRSGAYCTGLPPGKHPFILMNFNGTLDDVFTLAHELGHAFHSYLSR  240 (427)
T ss_pred             HHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             99999998418999999999976687212578999988220798999888688835898531568898631899999983


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf             56877657800599988688899999999841389989999999998620699999999999999999721201689998
Q gi|254780915|r  429 ETQGILTNNSSLTLAETASIFGETLTFDSLLQAASSKEERKILLANKIEDMLNSIVRQISFYDFELKLHTERRSTGDIPT  508 (626)
Q Consensus       429 ~~~~~~~~~~~~~~aE~~S~~~E~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~q~~~~~fe~~~h~~~~~~~~~t~  508 (626)
T Consensus       241 ~~~~~~~~~~~~~~AE~aS~~~E~ll~~~ll~~~~~~~~k~~~l~~~~~~~~~~~~~q~~~~~FE~~~y~~~~~g~~~t~  320 (427)
T cd06459         241 DNQPYLYSDYPIFLAEIASTFNELLLFDYLLKFAKDPEEKLYLLEHLLEDIRATLPRQTMFAEFEHEVYENPEEGEPLTA  320 (427)
T ss_pred             CCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
T ss_conf             28971204885789999889999999999998679999999999999999999999999999999999970651699989


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC
Q ss_conf             99999999999986077634588788850015254106675258999999999999999995673328999999983269
Q gi|254780915|r  509 HRINEIWLETQKESLGPAFDLSDLEYGSFWMMVPHFIESSFYVYAYAFGNCLVNSLYDIYKSNTVDCFKEKYLNILRAGN  588 (626)
Q Consensus       509 ~~l~~~~~~~~~~~~g~~~~~~~~~~~~~w~~~~H~y~~~fY~y~Y~~~~~~a~~l~~~~~~~~~~~~~~~y~~~L~~Gg  588 (626)
T Consensus       321 ~~~~~~~~~~~~~y~g~~~~~~-~~~~~~W~~i~Hfy~~pFY~y~Ya~g~l~al~l~~~~~~~~-~~~~~~Y~~~L~~gg  398 (427)
T cd06459         321 EELNEIYRELEKKYGGDLVEID-EEHGYEWARIPHFYYVPFYVYPYAFGQLAALALYAKYKEDG-EGAVEKYLELLKAGG  398 (427)
T ss_pred             HHHHHHHHHHHHHHCCCCCCCC-CCCCCEEECCCEECCCCCCCHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHCCC
T ss_conf             9999999999998479856558-87686640316211889985888999999999999999767-769999999986729


Q ss_pred             CCCHHHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf             99979999970889899889999999999
Q gi|254780915|r  589 SKHYSELLLPLNINLSDPNFWERGLQTVE  617 (626)
Q Consensus       589 s~~~~el~k~~G~d~~~~~~~~~~~~~~~  617 (626)
T Consensus       399 s~~~~el~k~aGvd~t~~~~~~~~~~~~~  427 (427)
T cd06459         399 SKSPLELLKKAGVDLTSPDFWEEAIDVIE  427 (427)
T ss_pred             CCCHHHHHHHHCCCCCCHHHHHHHHHHHC
T ss_conf             99999999982989898099999997629