HHsearch alignment for GI: 254780915 and conserved domain: cd06459
>cd06459 M3B_Oligoendopeptidase_F Peptidase family M3B Oligopeptidase F (PepF; Pz-peptidase B; EC 3.4.24.-) is mostly bacterial and includes oligoendopeptidase F from Lactococcus lactis. This enzyme hydrolyzes peptides containing between 7 and 17 amino acids with fairly broad specificity. The PepF gene is duplicated in L. lactis on the plasmid that bears it, while a shortened second copy is found in Bacillus subtilis. Most bacterial PepFs are cytoplasmic endopeptidases; however, the PepF Bacillus amyloliquefaciens oligopeptidase is a secreted protein and may facilitate the process of sporulation. Specifically, the yjbG gene encoding the homolog of the PepF1 and PepF2 oligoendopeptidases of Lactococcus lactis has been identified in Bacillus subtilis as an inhibitor of sporulation initiation when over expressed from a multicopy plasmid.
Probab=100.00 E-value=0 Score=708.90 Aligned_cols=423 Identities=35% Similarity=0.562 Sum_probs=400.1
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHH--HHHCCCCCHHH-HHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 30010003677777764444332--21003475233-2135418887679999999999865054216999999866678
Q gi|254780915|r 192 DTSQVGREALKRFFCENIESLRF--KINDQKIPLTK-AYKSFFDSDREVRKSAAKALSHTFNKSSHIFSFITNTLAKDEE 268 (626)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~l~~~dr~~Rk~a~~a~~~~~~~~~~~~a~il~~iv~~r~ 268 (626)
T Consensus 2 ~l~~~~~~a~~~~~~~~~~~~~~~~~~~G~~~~l~~~~~~~l~~~dr~~R~~A~~~~~~~~~~~~~~~a~il~~lv~~r~ 81 (427)
T cd06459 2 KLSETGNSAWSEYYDLLNSDLKFIFEFDGEELTLSQNLSNLLESPDREVRKKAFEALYKAYEKYENTLAAILNTLVKLRL 81 (427)
T ss_pred CCCCCCHHHHHHHHHHHHHCEEEEEEECCEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98875599999999998742578984499787518999988659499999999999999999818999999999999999
Q ss_pred HHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 86542789998897622225898999999998763062899999999998708875312344402565547779989999
Q gi|254780915|r 269 IQDRWRKYEKIADSRHLSNNVEPYVIEALMQSVKNYYPKTSHRYYELKKKWLKLDTMYFWDRLAPLPGTSQDIIPFEVAR 348 (626)
Q Consensus 269 e~A~llGy~s~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lg~~~l~~wD~~~~~~~~~~~~~~~ee~~ 348 (626)
T Consensus 82 ~~a~~rgy~~~~~~~l~~~~~~~~v~~~l~~~~~~-~~p~~~ry~~~k~k~lg~~~l~~~D~~~p~~~~~~~~~~~~ea~ 160 (427)
T cd06459 82 TLAKLRGYDSYLEAALFNNNIPEDVYDFLIAVVKE-NVPLLHRYLKLKKKLLGLDKLRPYDLYAPLVSGNPPKYTYEEAK 160 (427)
T ss_pred HHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCHHHHH
T ss_conf 99998699989999867069869999999999999-57899999999999858850159881487888888868999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99998666632899999998642485020103799874354766677751010365332467999999845899999612
Q gi|254780915|r 349 DLVLQSYAKFSPQMSIIAEKFFTHNWIDAPQYDGKGSGAFAHGTIPSVHPYILLNYLGKPQDVMTLAHELGHGIHFVLSS 428 (626)
Q Consensus 349 ~~v~~~~~~~~~e~~~~~~~~~~~~~iD~~~r~gKr~GA~~~~~~~~~~~~I~~N~~~~~~dv~TL~HE~GHa~H~~ls~ 428 (626)
T Consensus 161 ~~v~~~~~~~~~e~~~~~~~~~~~~wiD~~~r~gKr~Gay~~~~~~~~~p~IlmN~~gt~~dv~TLaHElGHa~H~~l~~ 240 (427)
T cd06459 161 ELVLEALSPLGPEYAEFAKRAFEERWIDVEPRKGKRSGAYCTGLPPGKHPFILMNFNGTLDDVFTLAHELGHAFHSYLSR 240 (427)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99999998418999999999976687212578999988220798999888688835898531568898631899999983
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 56877657800599988688899999999841389989999999998620699999999999999999721201689998
Q gi|254780915|r 429 ETQGILTNNSSLTLAETASIFGETLTFDSLLQAASSKEERKILLANKIEDMLNSIVRQISFYDFELKLHTERRSTGDIPT 508 (626)
Q Consensus 429 ~~~~~~~~~~~~~~aE~~S~~~E~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~q~~~~~fe~~~h~~~~~~~~~t~ 508 (626)
T Consensus 241 ~~~~~~~~~~~~~~AE~aS~~~E~ll~~~ll~~~~~~~~k~~~l~~~~~~~~~~~~~q~~~~~FE~~~y~~~~~g~~~t~ 320 (427)
T cd06459 241 DNQPYLYSDYPIFLAEIASTFNELLLFDYLLKFAKDPEEKLYLLEHLLEDIRATLPRQTMFAEFEHEVYENPEEGEPLTA 320 (427)
T ss_pred CCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
T ss_conf 28971204885789999889999999999998679999999999999999999999999999999999970651699989
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC
Q ss_conf 99999999999986077634588788850015254106675258999999999999999995673328999999983269
Q gi|254780915|r 509 HRINEIWLETQKESLGPAFDLSDLEYGSFWMMVPHFIESSFYVYAYAFGNCLVNSLYDIYKSNTVDCFKEKYLNILRAGN 588 (626)
Q Consensus 509 ~~l~~~~~~~~~~~~g~~~~~~~~~~~~~w~~~~H~y~~~fY~y~Y~~~~~~a~~l~~~~~~~~~~~~~~~y~~~L~~Gg 588 (626)
T Consensus 321 ~~~~~~~~~~~~~y~g~~~~~~-~~~~~~W~~i~Hfy~~pFY~y~Ya~g~l~al~l~~~~~~~~-~~~~~~Y~~~L~~gg 398 (427)
T cd06459 321 EELNEIYRELEKKYGGDLVEID-EEHGYEWARIPHFYYVPFYVYPYAFGQLAALALYAKYKEDG-EGAVEKYLELLKAGG 398 (427)
T ss_pred HHHHHHHHHHHHHHCCCCCCCC-CCCCCEEECCCEECCCCCCCHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHCCC
T ss_conf 9999999999998479856558-87686640316211889985888999999999999999767-769999999986729
Q ss_pred CCCHHHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 99979999970889899889999999999
Q gi|254780915|r 589 SKHYSELLLPLNINLSDPNFWERGLQTVE 617 (626)
Q Consensus 589 s~~~~el~k~~G~d~~~~~~~~~~~~~~~ 617 (626)
T Consensus 399 s~~~~el~k~aGvd~t~~~~~~~~~~~~~ 427 (427)
T cd06459 399 SKSPLELLKKAGVDLTSPDFWEEAIDVIE 427 (427)
T ss_pred CCCHHHHHHHHCCCCCCHHHHHHHHHHHC
T ss_conf 99999999982989898099999997629