HHsearch alignment for GI: 254780915 and conserved domain: pfam05960

>pfam05960 DUF885 Bacterial protein of unknown function (DUF885). This family consists of several hypothetical bacterial proteins several of which are putative membrane proteins.
Probab=95.90  E-value=0.14  Score=29.32  Aligned_cols=172  Identities=16%  Similarity=0.121  Sum_probs=98.2

Q ss_pred             CEEECCCCC-----CHHHHHHHHHHH--HHHHHHHHHCCCCCC--C-CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf             101036533-----246799999984--589999961256877--6-578005999886888999999998413899899
Q gi|254780915|r  398 PYILLNYLG-----KPQDVMTLAHEL--GHGIHFVLSSETQGI--L-TNNSSLTLAETASIFGETLTFDSLLQAASSKEE  467 (626)
Q Consensus       398 ~~I~~N~~~-----~~~dv~TL~HE~--GHa~H~~ls~~~~~~--~-~~~~~~~~aE~~S~~~E~~~~~~~~~~~~~~~~  467 (626)
T Consensus       346 ~~~~in~~~~~~~~~~~~~~~~~HE~~PGHh~Q~~~~~~~~~~~~~R~~~~~~~~~EGWAlY~E~l~~e~--G~~~dp~~  423 (536)
T pfam05960       346 GRYYINLYDLRSRPKYSLETLAAHEAVPGHHLQIALAQELEDLPPFRRLLGFTAYVEGWALYAEELGDEM--GLYEDPYS  423 (536)
T ss_pred             CEEEEECCCHHHHCCCCCCHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHC--CCCCCHHH
T ss_conf             6598868972342013411233202466089999999975787358998056127747999999999873--87789999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf             99999998620699999999999999999721201689998999999999999860776345887888500152541066
Q gi|254780915|r  468 RKILLANKIEDMLNSIVRQISFYDFELKLHTERRSTGDIPTHRINEIWLETQKESLGPAFDLSDLEYGSFWMMVPHFIES  547 (626)
Q Consensus       468 ~~~ll~~~~~~~~~~~~~q~~~~~fe~~~h~~~~~~~~~t~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~w~~~~H~y~~  547 (626)
T Consensus       424 ~lg~l~~~l~--------ra~r~vvD~glH~~-----~ws~~~a~~~~~~----~~~~~----~~~a~~e~~r---y~~~  479 (536)
T pfam05960       424 RLGMLQDELW--------RAARLVVDTGLHAK-----GWTREQAIDYLVE----NTGLS----EGEAEAEVDR---YIVW  479 (536)
T ss_pred             HHHHHHHHHH--------HHHHHHHHHHHHCC-----CCCHHHHHHHHHH----HCCCC----HHHHHHHHHH---HHCC
T ss_conf             9999999999--------99999952545227-----9999999999998----37998----7999999999---9729


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHC-CCH-HHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf             752589999999999999999956-733-28999999983269999799999
Q gi|254780915|r  548 SFYVYAYAFGNCLVNSLYDIYKSN-TVD-CFKEKYLNILRAGNSKHYSELLL  597 (626)
Q Consensus       548 ~fY~y~Y~~~~~~a~~l~~~~~~~-~~~-~~~~~y~~~L~~Ggs~~~~el~k  597 (626)
T Consensus       480 Pgq~~sY~~G~~~i~~lr~~a~~~lG~~f~lk~FH~~iL~~G~~--P~~~l~  529 (536)
T pfam05960       480 PGQALSYKLGKLKILELREKAEAALGDRFDLREFHDAVLSQGAL--PLDLLE  529 (536)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCC--CHHHHH
T ss_conf             62788899999999999999999758899999999999827999--889999