HHsearch alignment for GI: 254780915 and conserved domain: pfam05960
>pfam05960 DUF885 Bacterial protein of unknown function (DUF885). This family consists of several hypothetical bacterial proteins several of which are putative membrane proteins.
Probab=95.90 E-value=0.14 Score=29.32 Aligned_cols=172 Identities=16% Similarity=0.121 Sum_probs=98.2
Q ss_pred CEEECCCCC-----CHHHHHHHHHHH--HHHHHHHHHCCCCCC--C-CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 101036533-----246799999984--589999961256877--6-578005999886888999999998413899899
Q gi|254780915|r 398 PYILLNYLG-----KPQDVMTLAHEL--GHGIHFVLSSETQGI--L-TNNSSLTLAETASIFGETLTFDSLLQAASSKEE 467 (626)
Q Consensus 398 ~~I~~N~~~-----~~~dv~TL~HE~--GHa~H~~ls~~~~~~--~-~~~~~~~~aE~~S~~~E~~~~~~~~~~~~~~~~ 467 (626)
T Consensus 346 ~~~~in~~~~~~~~~~~~~~~~~HE~~PGHh~Q~~~~~~~~~~~~~R~~~~~~~~~EGWAlY~E~l~~e~--G~~~dp~~ 423 (536)
T pfam05960 346 GRYYINLYDLRSRPKYSLETLAAHEAVPGHHLQIALAQELEDLPPFRRLLGFTAYVEGWALYAEELGDEM--GLYEDPYS 423 (536)
T ss_pred CEEEEECCCHHHHCCCCCCHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHC--CCCCCHHH
T ss_conf 6598868972342013411233202466089999999975787358998056127747999999999873--87789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 99999998620699999999999999999721201689998999999999999860776345887888500152541066
Q gi|254780915|r 468 RKILLANKIEDMLNSIVRQISFYDFELKLHTERRSTGDIPTHRINEIWLETQKESLGPAFDLSDLEYGSFWMMVPHFIES 547 (626)
Q Consensus 468 ~~~ll~~~~~~~~~~~~~q~~~~~fe~~~h~~~~~~~~~t~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~w~~~~H~y~~ 547 (626)
T Consensus 424 ~lg~l~~~l~--------ra~r~vvD~glH~~-----~ws~~~a~~~~~~----~~~~~----~~~a~~e~~r---y~~~ 479 (536)
T pfam05960 424 RLGMLQDELW--------RAARLVVDTGLHAK-----GWTREQAIDYLVE----NTGLS----EGEAEAEVDR---YIVW 479 (536)
T ss_pred HHHHHHHHHH--------HHHHHHHHHHHHCC-----CCCHHHHHHHHHH----HCCCC----HHHHHHHHHH---HHCC
T ss_conf 9999999999--------99999952545227-----9999999999998----37998----7999999999---9729
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHC-CCH-HHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 752589999999999999999956-733-28999999983269999799999
Q gi|254780915|r 548 SFYVYAYAFGNCLVNSLYDIYKSN-TVD-CFKEKYLNILRAGNSKHYSELLL 597 (626)
Q Consensus 548 ~fY~y~Y~~~~~~a~~l~~~~~~~-~~~-~~~~~y~~~L~~Ggs~~~~el~k 597 (626)
T Consensus 480 Pgq~~sY~~G~~~i~~lr~~a~~~lG~~f~lk~FH~~iL~~G~~--P~~~l~ 529 (536)
T pfam05960 480 PGQALSYKLGKLKILELREKAEAALGDRFDLREFHDAVLSQGAL--PLDLLE 529 (536)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCC--CHHHHH
T ss_conf 62788899999999999999999758899999999999827999--889999