RPSBLAST alignment of GI: 254780915 and protein with PDBid: 2qr4

>2qr4_A Peptidase M3B, oligoendopeptidase F; structural genomics, PSI-2, protein structure initiative; 2.50A {Enterococcus faecium DO} Length = 587

 Score =  325 bits (834), Expect = 2e-89
 Identities = 136/586 (23%), Positives = 261/586 (44%), Gaps = 17/586 (2%)

Query: 47  SHDSQEISNDMECIEHESLAFKTRWEGNLAHATNQKNCHSLGAAIAEYERICELIGRIAS 106
           S   QE       +  E    + + +G L      +       AI    R+      I  
Sbjct: 2   SLSDQEFDEKYLELSEELKQSE-KHKGTLD-----QGASQFLNAIEFVLRVYRQTEVIYV 55

Query: 107 YAMLSYNCNLSSPTIRKFYTDINAKLADFEKVLIFFALEINTLDEALLEQSYAQDPLTLK 166
           YA L  + +  +   +  Y   ++  +   + + +F  EI  L +  + Q + ++P    
Sbjct: 56  YAHLKNDQDTGNTDYQALYARASSLFSKVSEAVSWFEPEILQLSDDQIWQYFKEEPKLEV 115

Query: 167 YSAWIKNIRKIKKHLLSNDMECLLSDTSQVGREALKRFFCENIESLRF----KINDQKIP 222
           Y  +I+ I   + H+LS + E LL+   ++   +   F   N   L F      N + + 
Sbjct: 116 YRHYIQQIVDNRAHVLSAEQESLLAGAGEIFDASSDTFAVLNNADLVFPTIEGENGEIVQ 175

Query: 223 LTKAYKSFF--DSDREVRKSAAKALSHTFNKSSHIFSFITNTLAKDEEIQDRWRKYEKIA 280
           L+          +DR VR++A K L   + +  + F+    T  K    + + R Y    
Sbjct: 176 LSHGVYGQLLESTDRRVREAAFKGLYSVYEQFRNTFASTLGTHIKGHNFKAKVRNYSSAR 235

Query: 281 DSRHLSNNVEPYVIEALMQSVKNYYPKTSHRYYELKKKWLKLDTMYFWDRLAPLPGTSQD 340
           ++   +N++   V + L+  V  + P   HRY EL+K+ L+++ ++ +D   P+ G +  
Sbjct: 236 EASLSNNHIPESVYDTLVDVVNKHLPLL-HRYMELRKRLLEVEKLHMYDLYTPVLGEAPI 294

Query: 341 IIPFEVARDLVLQSYAKFSPQMSIIAEKFFTHNWIDAPQYDGKGSGAFAHGTIPSVHPYI 400
              +E A++  L++      +   I EK F+  WID  +  GK SGA++ G     +PYI
Sbjct: 295 TFTYEEAKEKALEALKPMGEEYMAIVEKAFSERWIDVVENKGKRSGAYSSG-SYDTNPYI 353

Query: 401 LLNYLGKPQDVMTLAHELGHGIHFVLSSETQGILTNNSSLTLAETASIFGETLTFDSLLQ 460
           LLN+      + TL HE+GH +H   +   Q  +  + S+ LAE AS   E +  + LL+
Sbjct: 354 LLNWHDTLDQLFTLVHEMGHSVHSYFTRSNQPYVYGDYSIFLAEIASTTNENILTEYLLE 413

Query: 461 AASSKEERKILLANKIEDMLNSIVRQISFYDFELKLHTERRSTGDIPTHRINEIWLETQK 520
                  R  +L + ++    ++ RQ  F +FE  +HTE      + +  +++ + +   
Sbjct: 414 TEKDPRVRAYVLNHYLDGFKGTVFRQTQFAEFEHFMHTEDEKGVPLTSEYLSDSYGKLNA 473

Query: 521 ESLGPAFDLSDLEYGSFWMMVPHFIESSFYVYAYAFGNCLVNSLYDIYKSNTVDCFKEKY 580
           +  GPA +    E    W  +PHF   ++YV+ Y+ G    ++L     +   +   E Y
Sbjct: 474 KYYGPAVEEDP-EIKFEWSRIPHFY-YNYYVFQYSTGFSAASALAKKILNQEPE-ALENY 530

Query: 581 LNILRAGNSKHYSELLLPLNINLSDPNFWERGLQTVEKMIDDVEKM 626
           L  L+AGNS +  E++    ++++   + E  +   E+ ++++E++
Sbjct: 531 LAYLKAGNSDYPVEVMKKAGVDMTQAAYIEDAMSMFEQRLNELEEL 576