RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780915|ref|YP_003065328.1| oligoendopeptidase F
[Candidatus Liberibacter asiaticus str. psy62]
(626 letters)
>3ce2_A Putative peptidase; structural genomics, unknown function, PSI-2,
protein structure initiative; 2.60A {Chlamydophila
abortus S26}
Length = 618
Score = 344 bits (883), Expect = 3e-95
Identities = 138/597 (23%), Positives = 250/597 (41%), Gaps = 16/597 (2%)
Query: 37 PRWNLEDLYPSHDSQEISNDMECIEHESLAFKTRWEGNLAHATNQKNCHSLGAAIAEYER 96
W++ LY + + + D++ ++ T W A N SL + +
Sbjct: 22 DCWDITPLYLNRKAWKA--DLDSFGLKTDGSPT-WPALQATQYQLDNSESLLSLLTTLFS 78
Query: 97 ICELIGRIASYAMLSYNCNLSSPTIRKFYTDINAKLADFEKVLIFFALEINTLDEALLEQ 156
I + ++ YA L+++ ++++ I F + + + +L E+L+ Q
Sbjct: 79 IERKLNKLYVYAHLTHDQDITNQEGIADLKSITHLHTLFAEETSWVQPALTSLSESLIAQ 138
Query: 157 SYAQDPLTLKYSAWIKNIRKIKKHLLSNDMECLLSDTSQVGREALKRFFCENIESLRFKI 216
+ P Y +++ I ++ H + E +L+ A K F + + F
Sbjct: 139 -HLSAPCLAPYRFYLEKIFRLSIHTGTPGEEKILASAFTPLEVASKAFSSLSDSEIPFGQ 197
Query: 217 ND----QKIPLTKAYKSFF--DSDREVRKSAAKALSHTFNKSSHIFSFITNTLAKDEEIQ 270
PL+ A S + +DRE+RK++ A ++ H F+ + N +
Sbjct: 198 ATDSEGNSHPLSHALASLYMQSTDRELRKTSYLAQCERYHSYRHTFANLLNGKIQAHVFY 257
Query: 271 DRWRKYEKIADSRHLSNNVEPYVIEALMQSVKNYYPKTSHRYYELKKKWLKLDTMYFWDR 330
+ ++Y + NN+ V L+ VK +Y+ +K++ L L +F+D
Sbjct: 258 AKNKRYNSCLQAALYHNNIPTTVYTNLIDIVKKNSS-LITKYFSIKQRCLNLKDFHFYDV 316
Query: 331 LAPLPGTSQDIIPFEVARDLVLQSYAKFSPQM-SIIAEKFFTHNWIDAPQYDGKGSGAFA 389
APL + + F+ A DL+ S + + + + T W+D + K SGA++
Sbjct: 317 YAPLSQSKEKKYTFQEAVDLIYTSLSPLGTEYIDTLKQGLTTQGWVDKYENLNKRSGAYS 376
Query: 390 HGTIPSVHPYILLNYLGKPQDVMTLAHELGHGIHFVLSSETQGILTNNSSLTLAETASIF 449
G HPY+LLNY G DV +AHE GH +H S + Q + LAE AS
Sbjct: 377 SG-CYDSHPYVLLNYTGTLYDVSVIAHEGGHSMHSYFSRKHQPFHDAQYPIFLAEIASTL 435
Query: 450 GETLTFDSLLQAASSKEERKILLANKIEDMLNSIVRQISFYDFELKLHTERRSTGDIPTH 509
E L DS+L+ + SKEE+ +L ++ + +++ RQ+ F FE +H +
Sbjct: 436 NEMLLMDSMLKESDSKEEKITILTRCLDTIFSTLFRQVLFASFEYDIHHAAEHGVPLTEE 495
Query: 510 RINEIWLETQKESLGPAFDLSDLEYGSFWMMVPHFIESSFYVYAYAFGNCLVNSLYDIYK 569
++ + Q E G W +PHF +FYVY YA G +
Sbjct: 496 YLSSTYKNLQNEFYGEIITFDV-LSNIEWARIPHFY-YNFYVYQYATGIIAALCFLEKIL 553
Query: 570 SNTVDCFKEKYLNILRAGNSKHYSELLLPLNINLSDPNFWERGLQTVEKMIDDVEKM 626
+N D YLN L++G S E+L +++ ++ +EK I ++ +
Sbjct: 554 NNE-DNALNSYLNFLKSGGSDFPLEILKKSGLDMGTVEPIQKAFCFIEKKIQELSSL 609
>2qr4_A Peptidase M3B, oligoendopeptidase F; structural genomics, PSI-2,
protein structure initiative; 2.50A {Enterococcus
faecium DO}
Length = 587
Score = 325 bits (834), Expect = 2e-89
Identities = 136/586 (23%), Positives = 261/586 (44%), Gaps = 17/586 (2%)
Query: 47 SHDSQEISNDMECIEHESLAFKTRWEGNLAHATNQKNCHSLGAAIAEYERICELIGRIAS 106
S QE + E + + +G L + AI R+ I
Sbjct: 2 SLSDQEFDEKYLELSEELKQSE-KHKGTLD-----QGASQFLNAIEFVLRVYRQTEVIYV 55
Query: 107 YAMLSYNCNLSSPTIRKFYTDINAKLADFEKVLIFFALEINTLDEALLEQSYAQDPLTLK 166
YA L + + + + Y ++ + + + +F EI L + + Q + ++P
Sbjct: 56 YAHLKNDQDTGNTDYQALYARASSLFSKVSEAVSWFEPEILQLSDDQIWQYFKEEPKLEV 115
Query: 167 YSAWIKNIRKIKKHLLSNDMECLLSDTSQVGREALKRFFCENIESLRF----KINDQKIP 222
Y +I+ I + H+LS + E LL+ ++ + F N L F N + +
Sbjct: 116 YRHYIQQIVDNRAHVLSAEQESLLAGAGEIFDASSDTFAVLNNADLVFPTIEGENGEIVQ 175
Query: 223 LTKAYKSFF--DSDREVRKSAAKALSHTFNKSSHIFSFITNTLAKDEEIQDRWRKYEKIA 280
L+ +DR VR++A K L + + + F+ T K + + R Y
Sbjct: 176 LSHGVYGQLLESTDRRVREAAFKGLYSVYEQFRNTFASTLGTHIKGHNFKAKVRNYSSAR 235
Query: 281 DSRHLSNNVEPYVIEALMQSVKNYYPKTSHRYYELKKKWLKLDTMYFWDRLAPLPGTSQD 340
++ +N++ V + L+ V + P HRY EL+K+ L+++ ++ +D P+ G +
Sbjct: 236 EASLSNNHIPESVYDTLVDVVNKHLPLL-HRYMELRKRLLEVEKLHMYDLYTPVLGEAPI 294
Query: 341 IIPFEVARDLVLQSYAKFSPQMSIIAEKFFTHNWIDAPQYDGKGSGAFAHGTIPSVHPYI 400
+E A++ L++ + I EK F+ WID + GK SGA++ G +PYI
Sbjct: 295 TFTYEEAKEKALEALKPMGEEYMAIVEKAFSERWIDVVENKGKRSGAYSSG-SYDTNPYI 353
Query: 401 LLNYLGKPQDVMTLAHELGHGIHFVLSSETQGILTNNSSLTLAETASIFGETLTFDSLLQ 460
LLN+ + TL HE+GH +H + Q + + S+ LAE AS E + + LL+
Sbjct: 354 LLNWHDTLDQLFTLVHEMGHSVHSYFTRSNQPYVYGDYSIFLAEIASTTNENILTEYLLE 413
Query: 461 AASSKEERKILLANKIEDMLNSIVRQISFYDFELKLHTERRSTGDIPTHRINEIWLETQK 520
R +L + ++ ++ RQ F +FE +HTE + + +++ + +
Sbjct: 414 TEKDPRVRAYVLNHYLDGFKGTVFRQTQFAEFEHFMHTEDEKGVPLTSEYLSDSYGKLNA 473
Query: 521 ESLGPAFDLSDLEYGSFWMMVPHFIESSFYVYAYAFGNCLVNSLYDIYKSNTVDCFKEKY 580
+ GPA + E W +PHF ++YV+ Y+ G ++L + + E Y
Sbjct: 474 KYYGPAVEEDP-EIKFEWSRIPHFY-YNYYVFQYSTGFSAASALAKKILNQEPE-ALENY 530
Query: 581 LNILRAGNSKHYSELLLPLNINLSDPNFWERGLQTVEKMIDDVEKM 626
L L+AGNS + E++ ++++ + E + E+ ++++E++
Sbjct: 531 LAYLKAGNSDYPVEVMKKAGVDMTQAAYIEDAMSMFEQRLNELEEL 576
>3ahn_A Oligopeptidase, PZ peptidase A; hydrolase; HET: 3A1; 1.80A
{Geobacillus SP} PDB: 3ahm_A* 2h1n_A 2h1j_A
Length = 564
Score = 296 bits (759), Expect = 9e-81
Identities = 86/570 (15%), Positives = 190/570 (33%), Gaps = 33/570 (5%)
Query: 66 AFKTRWEGNLAHATNQKNCHSLGAAIAEYERICELIGRIASYAMLSYNCNLSSPTIRK-- 123
K ++ L N A+ E ++ +A + + + + ++
Sbjct: 15 KLKASFQQALQSFQKASNAEEQNEAMKEINQLRNDFSTMAQICYIRHTIDTNDEFYKQEQ 74
Query: 124 -FYTDINAKLADFEKVLIFFALEINTLDEALLEQSYAQDPLTLKYSAWIKNIRKIKKHLL 182
F+ ++ + N AL+ + W K + + + L
Sbjct: 75 DFFDEVEPIVKGLV----------NDYYRALVSSPFRSQ----LEGKWGKQLFALAEAEL 120
Query: 183 SNDMECLLSDTSQVGREALKRFFCENIESLRFKINDQKIPLTKAYKSFFDSDREVRKSAA 242
++ D L + + + S + ++ L + DR++RK A+
Sbjct: 121 KTYSPDIVEDLQLE--NKLTSEYTKLVASAKIFFEGEERTLAQLQPFVESPDRDMRKRAS 178
Query: 243 KALSHTFNKSSHIFSFITNTLAKDEEIQDRWRKYEKIAD---SRHLSNNVEPYVIEALMQ 299
+A F + F I + L K + ++ + +R + ++ +
Sbjct: 179 EARFTFFQEHEEKFDEIYDQLVKVRTAIAQKLGFKNFVELGYARLGRTDYNAEMVAKFRK 238
Query: 300 SVKNYYPKTSHRYYELKKKWLKLDTMYFWDRLAPLP-GTSQDIIPFEVARDLVLQSYAKF 358
V+ + + + E +++ + ++ + ++D P G + + Y +
Sbjct: 239 QVEKHIVPIAVKLRERQRERIGVEKLKYYDEAFVFPTGNPMPKGDANWIIENGKKMYEEL 298
Query: 359 SPQMSIIAEKFFTHNWIDAPQYDGKGSGAFAHGTIPSVHPYILLNYLGKPQDVMTLAHEL 418
SP+ H +D GK SG + P+I N+ G D+ L HE
Sbjct: 299 SPETGEFFRYMIEHELMDLVAKKGKASGGYCTYIENYKAPFIFSNFTGTSGDIDVLTHEA 358
Query: 419 GHGIHFVLSSETQGILTNNSSLTLAETASIFGETLTFDSLLQAASSKEERKILLANKIED 478
GH S + N +L E S+ E T+ + E+ + D
Sbjct: 359 GHAFQVYESRHYEIPEYNWPTLEACEIHSMSMEFFTWPWMKLFFKEDAEKY--QFYHLSD 416
Query: 479 MLNSIVRQISFYDFELKLHTERRSTGDIPTHRINEIWLETQKESLGPA--FDLSDLEYGS 536
L + ++ +F+ ++ + + W +++ + LE G
Sbjct: 417 ALLFLPYGVAVDEFQHFVYEN----PNATPAERKQAWRAIERKYMPTKDYDGNDYLERGG 472
Query: 537 FWMMVPHFIESSFYVYAYAFGNCLVNSLYDIYKSNTVDCFKEKYLNILRAGNSKHYSELL 596
FW H ++FY Y + + N + YL + R G SK ++EL+
Sbjct: 473 FWQRQSHIYTTAFYYIDYTLAQICAFQFWKRSRENYKE-AWNDYLTLCRQGGSKPFTELV 531
Query: 597 LPLNINL-SDPNFWERGLQTVEKMIDDVEK 625
N+ + + + +E ++ V+
Sbjct: 532 RVANLISPFEDGCVQSVVGGIEGWLNSVDD 561
>2h1n_A Oligoendopeptidase F; structural genomics, protein structure
initiative, midwest center for structural genomics,
MCSG, PSI; 3.00A {Geobacillus stearothermophilus} PDB:
2h1j_A
Length = 567
Score = 241 bits (614), Expect = 6e-64
Identities = 86/567 (15%), Positives = 183/567 (32%), Gaps = 27/567 (4%)
Query: 66 AFKTRWEGNLAHATNQKNCHSLGAAIAEYERICELIGRIASYAMLSYNCNLSSPTIRKFY 125
+ ++ L + A+ + +A+ + + + + FY
Sbjct: 18 QLQASFQEALDSFRRAGSAALQHEAMKRINELRRRYSTMANLCHIRHTIDTNDE----FY 73
Query: 126 TDINAKLADFEKVLIFFALEINTLDEALLEQSYAQDPLTLKYSAWIKNIRKIKKHLLSND 185
+ E V+ + AL+ + + W K + + + L
Sbjct: 74 KKEQDFFDETEPVVKGLVNDYY---RALVSSPFRAE----LEQVWGKQLFALAETQLKTY 126
Query: 186 MECLLSDTSQVGREALKRFFCENIESLRFKINDQKIPLTKAYKSFFDSDREVRKSAAKAL 245
++ D + L + + I S + ++ L + DR +R+ A++A
Sbjct: 127 APVIVEDLQKE--NKLASEYTKLIASAKIMFEGEERTLAQLQPFVESPDRAMRQRASEAR 184
Query: 246 SHTFNKSSHIFSFITNTLAKDEEIQDRWRKYEKIAD---SRHLSNNVEPYVIEALMQSVK 302
F + + L R ++ + +R + ++ + VK
Sbjct: 185 FSFFKDYEKELDELYDELVHVRTAIARKLGFQNFVELGYARLGRTDYNADMVAGYRRQVK 244
Query: 303 NYYPKTSHRYYELKKKWLKLDTMYFWDRLAPLPGTSQD-IIPFEVARDLVLQSYAKFSPQ 361
+ + + E +++ ++++ +Y++D P + + Q Y + SP+
Sbjct: 245 THIVPLAAKLRERQRQRIQVEKLYYYDEPFMFPTGNPTPKGDADWIVQNGRQMYEELSPE 304
Query: 362 MSIIAEKFFTHNWIDAPQYDGKGSGAFAHGTIPSVHPYILLNYLGKPQDVMTLAHELGHG 421
H +D GK G + P+I N+ G D+ L HE GH
Sbjct: 305 TGEFFRYMVEHELMDLVAKKGKAGGGYCTYIDDYKAPFIFSNFTGTSGDIDVLTHEAGHA 364
Query: 422 IHFVLSSETQGILTNNSSLTLAETASIFGETLTFDSLLQAASSKEERKILLANKIEDMLN 481
S N +L E S+ E T+ + E+ + D L
Sbjct: 365 FQVYESRHYDIPEYNWPTLEACEIHSMSMEFFTWPWMELFF--GEDADKYRFAHLSDALL 422
Query: 482 SIVRQISFYDFELKLHTERRSTGDIPTHRINEIWLETQKESLGPA--FDLSDLEYGSFWM 539
+ ++ +F+ ++ D+ +W +K L D LE G FW
Sbjct: 423 FLPYGVAVDEFQHAVYEN----PDMTPAERKSVWRNIEKAYLPTRDYADHDYLERGGFWQ 478
Query: 540 MVPHFIESSFYVYAYAFGNCLVNSLYDIYKSNTVDCFKEKYLNILRAGNSKHYSELLLPL 599
H FY Y + + + Y+ + R G S+ ++EL+
Sbjct: 479 RQGHIYTDPFYYIDYTLAQVCAFQFWKRAQEDRAS-AWRDYVALCRLGGSRPFTELVKSA 537
Query: 600 NINLS-DPNFWERGLQTVEKMIDDVEK 625
N+ + +E+ +D V+
Sbjct: 538 NLQSPFADGAVASVVGHIERWLDSVDD 564
>1j36_A ANCE, angiotensin converting enzyme; hydrolase; HET: LPR; 2.40A
{Drosophila melanogaster} SCOP: d.92.1.5 PDB: 1j37_A*
1j38_A
Length = 607
Score = 178 bits (452), Expect = 4e-45
Identities = 71/561 (12%), Positives = 142/561 (25%), Gaps = 76/561 (13%)
Query: 91 IAEYERICELIGRIASYAMLSYNCNLSSPTIRKFYTDINAKLADFEKVLIFFALEINTLD 150
+ + + + A +Y ++ K +I+A+LA F K + +
Sbjct: 16 LENLNKELAKRTNVETEAAWAYRSAITDEN-EKKKNEISAELAKFMKEVASDTTKFQWRS 74
Query: 151 EALLEQSYAQDPLTLKYSAWIKNIRKIKKHLLSNDMECLLSDTSQVGREALKRFFCENIE 210
+ LT A + + + ME + + +
Sbjct: 75 YQSEDLKRQFKALTKLGYAALPEDDYAELLDTLSAMESNFAKV------KVCDYKDSTKC 128
Query: 211 SLRFKINDQKIPLTKAYKSFFDSDREVRKSAAKALSHTFNKSSHIFSFITNTLAKDEEIQ 270
L +++ + + + + + AK
Sbjct: 129 DLALDPEIEEV---ISKSRDHEELAYYWREFYDKAGTAVRSQFERYVELNTKAAKLNNFT 185
Query: 271 DR---WRKYEKIADSRHLSNNVEPYVIEALMQSVKNYYPKTSHRYY--------ELKKKW 319
W + ++ + Q + Y +
Sbjct: 186 SGAEAWLDEYEDDTFEQQLEDIFADIRPLYQQIHGYVRFRLRKHYGDAVVSETGPIPMHL 245
Query: 320 LKLDTMYFWDRLAPLPGTSQDIIPFEVARDLVLQSYAKFSPQMSIIAEKFFT-------- 371
L W +A + + +V+ ++ Q+Y +M + + FFT
Sbjct: 246 LGNMWAQQWSEIADIVSPFPEKPLVDVSAEMEKQAYTPL--KMFQMGDDFFTSMNLTKLP 303
Query: 372 ----HNWIDAPQYDGKGSGAFAHGTI--PSVHPYILLNYLGKPQDVMTLAHELGHGIHFV 425
I DG+ A I + T+ HELGH +F+
Sbjct: 304 QDFWDKSIIEKPTDGRDLVCHASAWDFYLIDDVRIKQCTRVTQDQLFTVHHELGHIQYFL 363
Query: 426 LSSETQGILTNNSSLTLAETASIFGETLTFDS---------LLQAASSKEERKILLANKI 476
Q + + A +L+ + L E R L
Sbjct: 364 QYQH-QPFVYRTGANPGFHEAVGDVLSLSVSTPKHLEKIGLLKDYVRDDEARINQLFLTA 422
Query: 477 EDMLNSIVRQISFYDFELKLHTERRSTGDIPTHRINEIWLETQKESLGPAFDLSDLEYGS 536
D + + + + L G++ N + + + E G + E
Sbjct: 423 LDKIVFLPFAFTMDKYRWSLF-----RGEVDKANWNCAFWKLRDEYSGIEPPVVRSEKDF 477
Query: 537 FWMMVPHFIESSFY-------VYAYAF--GNCLVNSLY------------DIYKSNTVDC 575
H Y + + F C+ Y DIY S
Sbjct: 478 DAPAKYHISADVEYLRYLVSFIIQFQFYKSACIKAGQYDPDNVELPLDNCDIYGSARAG- 536
Query: 576 FKEKYLNILRAGNSKHYSELL 596
+ N+L G SK + + L
Sbjct: 537 --AAFHNMLSMGASKPWPDAL 555
>2x96_A Angiotensin converting enzyme; hydrolase, ACE inhibitor, zinc
metallopeptidase; HET: RX3 EPE NAG BMA MAN; 1.85A
{Drosophila melanogaster} PDB: 2x8z_A* 2x90_A* 2x91_A*
2x8y_A* 2x97_A* 2xhm_A* 2x94_A* 2x92_A* 2x93_A* 2x95_A*
1j36_A* 1j37_A* 1j38_A
Length = 598
Score = 176 bits (447), Expect = 1e-44
Identities = 66/559 (11%), Positives = 136/559 (24%), Gaps = 72/559 (12%)
Query: 91 IAEYERICELIGRIASYAMLSYNCNLSSPTIRKFYTDINAKLADFEKVLIFFALEINTLD 150
+ + + + A +Y N++ +K +I+A+LA F K + +
Sbjct: 13 LENLNKELAKRTNVETEAAWAYGSNITDENEKKK-NEISAELAKFMKEVASDTTKFQWRS 71
Query: 151 EALLEQSYAQDPLTLKYSAWIKNIRKIKKHLLSNDMECLLSDTSQVGREALKRFFCENIE 210
+ LT A + + + ME + + +
Sbjct: 72 YQSEDLKRQFKALTKLGYAALPEDDYAELLDTLSAMESNFAKV------KVCDYKDSTKC 125
Query: 211 SLRFKINDQKIPLTKAYKSFFDSDREVRKSAAKALSHTFNKSSHIFSFITNTLAKDEEIQ 270
L +++ + + + + + AK
Sbjct: 126 DLALDPEIEEV---ISKSRDHEELAYYWREFYDKAGTAVRSQFERYVELNTKAAKLNNFT 182
Query: 271 D---RWRKYEKIADSRHLSNNVEPYVIEALMQSV--------KNYYPKTSHRYYELKKKW 319
W + ++ + Q K+Y +
Sbjct: 183 SGAEAWLDEYEDDTFEQQLEDIFADIRPLYQQIHGYVRFRLRKHYGDAVVSETGPIPMHL 242
Query: 320 LKLDTMYFWDRLAPLPGTSQDIIPFEVARDLVLQSYAKFSPQMSIIAEKFFT-------- 371
L W +A + + +V+ ++ Q Y +M + + FFT
Sbjct: 243 LGNMWAQQWSEIADIVSPFPEKPLVDVSAEMEKQGY--TPLKMFQMGDDFFTSMNLTKLP 300
Query: 372 ------HNWIDAPQYDGKGSGAFAHGTIPSVHPYILLNYLGKPQDVMTLAHELGHGIHFV 425
A A + I + T+ HELGH +F+
Sbjct: 301 QDFWDKSIIEKPTDGRDLVCHASAWDFYLTDDVRIKQCTRVTQDQLFTVHHELGHIQYFL 360
Query: 426 LSSETQGILTNNSSLTLAETASIFGETLTFDS---------LLQAASSKEERKILLANKI 476
Q + + A +L+ + L E R L
Sbjct: 361 QYQH-QPFVYRTGANPGFHEAVGDVLSLSVSTPKHLEKIGLLKDYVRDDEARINQLFLTA 419
Query: 477 EDMLNSIVRQISFYDFELKLHTERRSTGDIPTHRINEIWLETQKESLGPAFDLSDLEYGS 536
D + + + + L G++ N + + + E G + E
Sbjct: 420 LDKIVFLPFAFTMDKYRWSLF-----RGEVDKANWNCAFWKLRDEYSGIEPPVVRSEKDF 474
Query: 537 FWMMVPHFIESSFYVYAYAFGNCLVNSLYDIYKSNTVDCFK------------------- 577
H I + Y + Y
Sbjct: 475 DAPAKYH-ISADVEYLRYLVSFIIQFQFYKSACIKAGQYDPDNVELPLDNCDIYGSAAAG 533
Query: 578 EKYLNILRAGNSKHYSELL 596
+ N+L G SK + + L
Sbjct: 534 AAFHNMLSMGASKPWPDAL 552
>1uze_A Angiotensin converting enzyme; metalloprotease, inhibitor,
enalaprilat, zinc dependant peptidase, anti-hypertensive
drug; HET: EAL; 1.82A {Homo sapiens} SCOP: d.92.1.5 PDB:
1o8a_A* 1o86_A* 1uzf_A* 2oc2_A* 2iux_A* 2iul_A* 3bkk_A*
3bkl_A*
Length = 589
Score = 176 bits (447), Expect = 1e-44
Identities = 79/562 (14%), Positives = 167/562 (29%), Gaps = 87/562 (15%)
Query: 91 IAEYERICELIGRIASYAMLSYNCNLSSPTIRKFYTDINAKLADFEKVLIFFALEINTLD 150
+ EY+R +++ + A +YN N+++ T K N ++A+ + + D
Sbjct: 12 VEEYDRTSQVVWNEYAEANWNYNTNITTET-SKILLQKNMQIANHTL---KYGTQARKFD 67
Query: 151 EALLEQSYAQDPLTLKYSAWIKNIRKIKKHLLSNDMECLLSD-------TSQVGREALKR 203
L+ IK ++ +++ L + T V
Sbjct: 68 VNQLQ--------NTTIKRIIKKVQDLERAALPAQELEEYNKILLDMETTYSVATVCHPN 119
Query: 204 FFCENIESLRFKINDQKIPLTKAYKSFFDSDREVRKSAAKALSHTFNKSSHIFSFITNTL 263
C +E + ++ Y+ + R A +A+ + K + + N
Sbjct: 120 GSCLQLEPDLTNVMAT----SRKYEDLLWAWEGWRDKAGRAILQFYPK----YVELINQA 171
Query: 264 AKDEEIQDRWRKYEKIADSRHLSNNVE--PYVIEALMQSVKNYYPKTSHRYY-------- 313
A+ D + + ++ L ++E ++ L ++ Y + HR+Y
Sbjct: 172 ARLNGYVDAGDSWRSMYETPSLEQDLERLFQELQPLYLNLHAYVRRALHRHYGAQHINLE 231
Query: 314 -ELKKKWLKLDTMYFWDRLAPLPGTSQDIIPFEVARDLVLQSYAKFSPQMSIIAEKFFT- 371
+ L W + L + ++ Q + +M A+ FFT
Sbjct: 232 GPIPAHLLGNMWAQTWSNIYDLVVPFPSAPSMDTTEAMLKQGWT--PRRMFKEADDFFTS 289
Query: 372 -----------HNWIDAPQYDGKGSGAFAHG--TIPSVHPYILLNYLGKPQDVMTLAHEL 418
+ + DG+ A I +D++ HE+
Sbjct: 290 LGLLPVPPEFWNKSMLEKPTDGREVVCHASAWDFYNGKDFRIKQCTTVNLEDLVVAHHEM 349
Query: 419 GHGIHFVLSSETQGILTNNSSLTLAETASIFGETLTFDS---------LLQAASSKEERK 469
GH +F+ + + + A L+ + L S E
Sbjct: 350 GHIQYFMQYKD-LPVALREGANPGFHEAIGDVLALSVSTPKHLHSLNLLSSEGGSDEHDI 408
Query: 470 ILLANKIEDMLNSIVRQISFYDFELKLHTERRSTGDIPTHRINEIWLETQKESLGPAFDL 529
L D + I + ++ G I N+ W + + G +
Sbjct: 409 NFLMKMALDKIAFIPFSYLVDQWRWRVF-----DGSITKENYNQEWWSLRLKYQGLCPPV 463
Query: 530 SDLEYGSFWMMVPHFIESSFY-------VYAYAFGNCLVNSLY--------DIYKSNTVD 574
+ H S Y + + F L + DIY+S
Sbjct: 464 PRTQGDFDPGAKFHIPSSVPYIRYFVSFIIQFQFHEALCQAAGHTGPLHKCDIYQSKEAG 523
Query: 575 CFKEKYLNILRAGNSKHYSELL 596
++ ++ G S+ + E +
Sbjct: 524 ---QRLATAMKLGFSRPWPEAM 542
>1r42_A Angiotensin I converting enzyme 2; zinc metallopeptidase domain,
native or open conformation, chloride ION binding site;
HET: NAG; 2.20A {Homo sapiens} SCOP: d.92.1.5 PDB:
1r4l_A* 2ajf_A* 3d0g_A* 3d0h_A* 3d0i_A*
Length = 615
Score = 164 bits (416), Expect = 5e-41
Identities = 88/572 (15%), Positives = 165/572 (28%), Gaps = 88/572 (15%)
Query: 104 IASYAMLSYNCNLSSPTIRKFYTDINAKLADF--EKVLIFFALEINTLDEALLEQSYAQD 161
+ S ++ + + F N + D + L + N +E + + A D
Sbjct: 8 LLSLVAVTAAQSTIEEQAKTFLDKFNHEAEDLFYQSSLASWNYNTNITEENVQNMNNAGD 67
Query: 162 PLTLKYSAWIKNIRKIKKHLLSN-DMECLLSDTSQVGREALKRFFCENIESL-------- 212
+ + + N ++ L Q G L + + ++
Sbjct: 68 KWSAFLKEQSTLAQMYPLQEIQNLTVKLQLQALQQNGSSVLSEDKSKRLNTILNTMSTIY 127
Query: 213 -RFKINDQKIP-----LTKAYKSFFDSDR------EVRKSAAKALSHTFNKSSHIFSFIT 260
K+ + P L + +S + + +
Sbjct: 128 STGKVCNPDNPQECLLLEPGLNEIMANSLDYNERLWAWESWRSEVGKQLRPLYEEYVVLK 187
Query: 261 NTLAKD---EEIQDRWRKY--------------EKIADSRHLSNNVEPY---VIEALMQS 300
N +A+ E+ D WR + I D H ++P + +
Sbjct: 188 NEMARANHYEDYGDYWRGDYEVNGVDGYDYSRGQLIEDVEHTFEEIKPLYEHLHAYVRAK 247
Query: 301 VKNYYPKTSHRYYELKKKWLKLDTMYFWDRLAPLPGTSQDIIPFEVARDLVLQSYAKFSP 360
+ N YP L L FW L L +V +V Q++
Sbjct: 248 LMNAYPSYISPIGCLPAHLLGDMWGRFWTNLYSLTVPFGQKPNIDVTDAMVDQAWDAQ-- 305
Query: 361 QMSIIAEKFFT---------HNWI-DAPQYDGKGSGAFAHGT---IPSVHPYILLNYLGK 407
++ AEKFF W G A H T + IL+
Sbjct: 306 RIFKEAEKFFVSVGLPNMTQGFWENSMLTDPGNVQKAVCHPTAWDLGKGDFRILMCTKVT 365
Query: 408 PQDVMTLAHELGHGIHFVLSSETQGILTNNSSLTLAETASIFGETLTFDS-------LLQ 460
D +T HE+GH + ++ Q L N + A +L+ + L
Sbjct: 366 MDDFLTAHHEMGHIQYD-MAYAAQPFLLRNGANEGFHEAVGEIMSLSAATPKHLKSIGLL 424
Query: 461 AASSKEERKILLANKIEDMLNSIVRQISFYDFELKLHTERRSTGDIPTHRINEIWLETQK 520
+ +E+ + + ++ L + Y E G+IP + + W E ++
Sbjct: 425 SPDFQEDNETEINFLLKQALTIVGTLPFTYMLEKWRW--MVFKGEIPKDQWMKKWWEMKR 482
Query: 521 ESLGPAFDLSDLEYGSFWMMVPHFIESSFYVYAYAFGNCLVNSLY--------------- 565
E +G + E + H + + + Y
Sbjct: 483 EIVGVVEPVPHDETYCDPASLFH-VSNDYSFIRYYTRTLYQFQFQEALCQAAKHEGPLHK 541
Query: 566 -DIYKSNTVDCFKEKYLNILRAGNSKHYSELL 596
DI S +K N+LR G S+ ++ L
Sbjct: 542 CDISNSTEAG---QKLFNMLRLGKSEPWTLAL 570
>3nxq_A Angiotensin-converting enzyme; dicarboxy zinc metallopeptidase,
hydrolase, hydrolase-hydrol inhibitor complex; HET: RX4
NAG FUC BMA P6G PG4; 1.99A {Homo sapiens} PDB: 2c6n_A*
2c6f_A*
Length = 629
Score = 135 bits (340), Expect = 3e-32
Identities = 73/560 (13%), Positives = 156/560 (27%), Gaps = 78/560 (13%)
Query: 91 IAEYERICELIGRIASYAMLSYNCNLSSPTIRKFYTDINAKLADFEKVLIFFALEINTLD 150
Y+ E + + A +++ N+++ R+ + +F + A E+
Sbjct: 21 AQSYQSSAEQVLFQSVAASWAHDTNITAENARR-QEEAALLSQEFAEAWGQKAKELYEPI 79
Query: 151 EALLEQSYAQDPLTLKYSAWIKNIRKIKKHLLSNDMEC----LLSDTSQVGREALKRFFC 206
Q + I +R + L LLS S++ A
Sbjct: 80 --------WQQFTDPQLRRIIGAVRTLGSANLPLAKRQQYNALLSQMSRIYSTAKVCLPQ 131
Query: 207 ENIESLRFKINDQKIPLTKAYKSFFDSDREVRKSAAKALSHTFNKSSHIFSFITNTLAKD 266
+ + I A + + A F+ ++N K
Sbjct: 132 KTATCWSLDPDLTNI---LASSRSYAMLLFAWEGWHNAAGIPLKPLYEDFTALSNEAYKQ 188
Query: 267 EEIQDRWRKYEKIADSRHLSNNVE-----------PYVIEALMQSVKNYYPKTSHRYYEL 315
+ D + +S +++E + Y + + +
Sbjct: 189 DGFTDTGAYWRSWYNSPTFEDDLEHLYQQLEPLYLNLHAFVRRALHRRYGDRYINLRGPI 248
Query: 316 KKKWLKLDTMYFWDRLAPLPGTSQDIIPFEVARDLVLQSYAKFSPQMSIIAEKFFT---- 371
L W+ + + D +V ++ Q + M +AE+FFT
Sbjct: 249 PAHLLGDMWAQSWENIYDMVVPFPDKPNLDVTSTMLQQGWQAT--HMFRVAEEFFTSLEL 306
Query: 372 --------HNWIDAPQYDGKGSGAFAHGTIPS--VHPYILLNYLGKPQDVMTLAHELGHG 421
+ DG+ A I + T+ HE+GH
Sbjct: 307 SPMPPEFWEGSMLEKPADGREVVCHASAWDFYNRKDFRIKQCTRVTMDQLSTVHHEMGHI 366
Query: 422 IHFVLSSETQGILTNNSSLTLAETASIFGETLTFDS---------LLQAASSKEERKILL 472
+++ + + + A L+ + L + + E L
Sbjct: 367 QYYLQYKD-LPVSLRRGANPGFHEAIGDVLALSVSTPEHLHKIGLLDRVTNDTESDINYL 425
Query: 473 ANKIEDMLNSIVRQISFYDFELKLHTERRSTGDIPTHRINEIWLETQKESLGPAF----D 528
+ + + + + +G P R N W + + G +
Sbjct: 426 LKMALEKIAFLPFGYLVDQWRWGVF-----SGRTPPSRYNFDWWYLRTKYQGICPPVTRN 480
Query: 529 LSDLEYGSFWMMVPHFIESSFY-------VYAYAFGNCLVNSLYDIYKSNTVDCFK---- 577
+ + G+ + H + Y V + F L + D ++
Sbjct: 481 ETHFDAGAKF----HVPNVTPYIRYFVSFVLQFQFHEALCKEAGYEGPLHQCDIYRSTKA 536
Query: 578 -EKYLNILRAGNSKHYSELL 596
K +LRAG+S+ + E+L
Sbjct: 537 GAKLRKVLRAGSSRPWQEVL 556
>2c6n_A Angiotensin-converting enzyme, somatic isoform; hydrolase,
angiotensin-I converting enzyme, N domain, zinc
metallopeptidase, metalloprotease; HET: NAG NDG LPR;
3.0A {Homo sapiens} PDB: 2c6f_A*
Length = 612
Score = 127 bits (320), Expect = 8e-30
Identities = 80/563 (14%), Positives = 173/563 (30%), Gaps = 84/563 (14%)
Query: 91 IAEYERICELIGRIASYAMLSYNCNLSSPTIRKFYTDINAKLADFEKVLIFFALEINTLD 150
Y E + + A +++ N+++ R+ + +F + A E+
Sbjct: 21 AQSYNSSAEQVLFQSVAASWAHDTNITAENARR-QEEAALLSQEFAEAWGQKAKELYEPI 79
Query: 151 EALLEQSYAQDPLTLKYSAWIKNIRKIKKHLLSND----MECLLSDTSQVGREALKRFFC 206
DP + I +R + L LLS+ S++ A
Sbjct: 80 WQNF-----TDPQLRR---IIGAVRTLGSANLPLAKRQQYNALLSNMSRIYSTAKVCLPN 131
Query: 207 ENIESLRFKINDQKI-PLTKAYKSFFDSDREVRKSAAKALSHTFNKSSHIFSFITNTLAK 265
+ + I +++Y + +A L + F+ ++N K
Sbjct: 132 KTATCWSLDPDLTNILASSRSYAMLLFAWEGWHNAAGIPLKPLYED----FTALSNEAYK 187
Query: 266 DEEIQDRWRKYEKIADSRHLSNNVEPY--VIEALMQSVKNYYPKTSHRYY---------E 314
+ D + +S +++E +E L ++ + + HR Y
Sbjct: 188 QDGFTDTGAYWRSWYNSPTFEDDLEHLYQQLEPLYLNLHAFVRRALHRRYGDRYINLRGP 247
Query: 315 LKKKWLKLDTMYFWDRLAPLPGTSQDIIPFEVARDLVLQSYAKFSPQMSIIAEKFFT--- 371
+ L W+ + + D +V ++ Q + + M +AE+FFT
Sbjct: 248 IPAHLLGDMWAQSWENIYDMVVPFPDKPNLDVTSTMLQQGWN--ATHMFRVAEEFFTSLE 305
Query: 372 ---------HNWIDAPQYDGKGSGAFAHGTI--PSVHPYILLNYLGKPQDVMTLAHELGH 420
+ DG+ A I + T+ HE+GH
Sbjct: 306 LSPMPPEFWEGSMLEKPADGREVVCHASAWDFYNRKDFRIKQCTRVTMDQLSTVHHEMGH 365
Query: 421 GIHFVLSSETQGILTNNSSLTLAETASIFGETLTFDS---------LLQAASSKEERKIL 471
+++ + + + A L+ + L + + E
Sbjct: 366 IQYYLQYKD-LPVSLRRGANPGFHEAIGDVLALSVSTPEHLHKIGLLDRVTNDTESDINY 424
Query: 472 LANKIEDMLNSIVRQISFYDFELKLHTERRSTGDIPTHRINEIWLETQKESLG----PAF 527
L + + + + + +G P R N W + + G
Sbjct: 425 LLKMALEKIAFLPFGYLVDQWRWGVF-----SGRTPPSRYNFDWWYLRTKYQGICPPVTR 479
Query: 528 DLSDLEYGSFWMM------VPHFIESSFYVYAYAFGNCLVNSLY--------DIYKSNTV 573
+ + + G+ + + + +F+ +V + F L DIY+S
Sbjct: 480 NETHFDAGAKFHVPNVTPYIRYFVS---FVLQFQFHEALCKEAGYEGPLHQCDIYRSTKA 536
Query: 574 DCFKEKYLNILRAGNSKHYSELL 596
K +L+AG+S+ + E+L
Sbjct: 537 G---AKLRKVLQAGSSRPWQEVL 556
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 65.7 bits (160), Expect = 3e-11
Identities = 90/590 (15%), Positives = 164/590 (27%), Gaps = 239/590 (40%)
Query: 162 PLTLKY-----------SAWIK--NIRKIKKHLLSNDMECLLSD---TSQVGREALKRFF 205
PLTL + +++ +++ +L E +D T+ E + +F
Sbjct: 8 PLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPA--ELVGKF- 64
Query: 206 CENIESLRFKINDQKIPLTKAYKSFFDSDREVRKSAAKALSHTFNKSSHIFSFITNTLAK 265
L + ++ P +V + + + + I + L +
Sbjct: 65 ------LGY-VSSLVEPSKVG------QFDQVLNLCLTEFENCYLEGNDIHALAA-KLLQ 110
Query: 266 DEEIQDRWRK------YEKIADSRHLSNNVEPYVIE-ALMQSVKNYYPK---------TS 309
+ + K +R ++ AL ++V + +
Sbjct: 111 ENDTTLVKTKELIKNYIT----ARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNT 166
Query: 310 HRYY-ELKKKWLKLDTMYFWDRLAPLPGTSQDIIPFEVARDLVLQSYAKFSPQMSIIAEK 368
Y+ EL+ L Y L D+I F A L + + AEK
Sbjct: 167 DDYFEELRD----LYQTY-----HVL---VGDLIKF-SAE--TLSELIR-TTL---DAEK 207
Query: 369 FFTH-----NWIDAPQYDGKGSGAFAHGTIPSVH---------PYI----LLNY------ 404
FT W++ P P P I L +Y
Sbjct: 208 VFTQGLNILEWLENPS------------NTPDKDYLLSIPISCPLIGVIQLAHYVVTAKL 255
Query: 405 LGK-PQDVMT-LAHELGHGIHFVLSSETQGILTNNSSLTLAETASI--FGE------TLT 454
LG P ++ + L GH +QG++T ++ +AET S F T+
Sbjct: 256 LGFTPGELRSYLKGATGH---------SQGLVT---AVAIAETDSWESFFVSVRKAITVL 303
Query: 455 F----------------DSLLQAASSKEE-------------RKILLANKIEDMLNSIV- 484
F S+L+ + E ++ + + NS +
Sbjct: 304 FFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQV--QDYVNKTNSHLP 361
Query: 485 --RQI------------------SFYDFELKLHTERRSTG-D---IPTHRINEIWLETQK 520
+Q+ S Y L L + +G D IP +++
Sbjct: 362 AGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIP-F--------SER 412
Query: 521 ESLGPAFDLSDLEYGSFWMMVP-HFIESSFYVY-AYAFGNCLVNSL--YDIYKSNTVDCF 576
+ F L + P H S + A + L ++ F
Sbjct: 413 K---LKFSNRFLP-----VASPFH----SHLLVPASDL---INKDLVKNNV-------SF 450
Query: 577 KEKYLNI----------LRAGNSKHYSELLLPLNINL--SDPNFWERGLQ 614
K + I LR S + ++ P WE Q
Sbjct: 451 NAKDIQIPVYDTFDGSDLRV-----LSGSISERIVDCIIRLPVKWETTTQ 495
Score = 53.8 bits (129), Expect = 1e-07
Identities = 70/420 (16%), Positives = 125/420 (29%), Gaps = 161/420 (38%)
Query: 1 MTKYPDYEFFSNAFFRKAL--RSSDMTTMDSQENLGN-------LPRWNLEDLYPSH--- 48
M K P + ++A FR + + Q GN L R +L Y
Sbjct: 132 MAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQ---GNTDDYFEEL-R-DLYQTYHVLVGD 186
Query: 49 --DS-----QEISNDMECIEHESLAFKTR------WEGNLAHATNQKNCHSL-GAAIAEY 94
E+ E T+ W L + +N + L I+
Sbjct: 187 LIKFSAETLSELIRTTLDAEK----VFTQGLNILEW---LENPSNTPDKDYLLSIPIS-- 237
Query: 95 ERICELIG--RIASYAMLSYNCNLSSPTIRK--------------------------FYT 126
C LIG ++A Y + + + +R F+
Sbjct: 238 ---CPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFV 294
Query: 127 DINAKLADFEKVLIFFALEIN------TLDEALLEQSYAQD---P---LT---LKYSAWI 171
+ + A VL F + +L ++LE S + P L+ L
Sbjct: 295 --SVRKA--ITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQ 350
Query: 172 KNIRKIKKHL---------LSNDMECLLSDTSQV--G-REALKRFFCENIESLRFKI--- 216
+ K HL L N + V G ++L N+ +LR K
Sbjct: 351 DYVNKTNSHLPAGKQVEISLVN------GAKNLVVSGPPQSLYGL---NL-TLR-KAKAP 399
Query: 217 --NDQ-KIPLTKAYKSFFDSDREVRKSAAKALSHTFNKSSHIFS-FITNTLAKDEEI--Q 270
DQ +IP ++ RK S+ F + S F ++ L ++ +
Sbjct: 400 SGLDQSRIPFSE------------RKLK---FSNRFLP---VASPFHSHLLVPASDLINK 441
Query: 271 DRWRKYEKI---------------ADSRHLSNNVEPYVIEALMQSVKNYYPKT-----SH 310
D + +D R LS ++ +++ +++ + T +H
Sbjct: 442 DLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVK-WETTTQFKATH 500
Score = 48.8 bits (116), Expect = 4e-06
Identities = 48/253 (18%), Positives = 80/253 (31%), Gaps = 100/253 (39%)
Query: 85 HSLG----AAIAE-------YE---RICEL---IG-R----------------------- 103
HS G AIAE + + + IG R
Sbjct: 273 HSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNE 332
Query: 104 -IASYAMLSYNCNLSSPTIRKFYTDINAKLADFEKVLIFFALEINTLDEALLEQSYAQDP 162
+ S MLS + NL+ ++ + N+ L ++V I +L +N ++ + P
Sbjct: 333 GVPSP-MLSIS-NLTQEQVQDYVNKTNSHLPAGKQVEI--SL-VNGAKNLVV----SGPP 383
Query: 163 LTLKYSAWIKNIRKIK---------------KHLLSNDM---------ECLLSDTSQVGR 198
+L Y +RK K K SN L+ + +
Sbjct: 384 QSL-Y-GLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLI-- 439
Query: 199 EALKRFFCENIESLRFKINDQKIPLTKAYKSFFDSD-REVRKSAAKAL-----SHTFN-- 250
K N+ F D +IP+ Y +F SD R + S ++ +
Sbjct: 440 --NKDLVKNNVS---FNAKDIQIPV---YDTFDGSDLRVLSGSISERIVDCIIRLPVKWE 491
Query: 251 -----KSSHIFSF 258
K++HI F
Sbjct: 492 TTTQFKATHILDF 504
Score = 43.8 bits (103), Expect = 1e-04
Identities = 93/643 (14%), Positives = 171/643 (26%), Gaps = 293/643 (45%)
Query: 45 YPSHDSQEISNDMECIEHESLAFKTRWEGNLAHATNQKNC----HSLGAAIAEYER---- 96
P ++ + D E L ++ G ++ L + E+E
Sbjct: 41 LPEP-TEGFAADDEPTTPAELV--GKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLE 97
Query: 97 -------ICELIGR-----------IASYAMLSYN-CNLSSPTIRKFYT--------DIN 129
+L+ I +Y ++ K + N
Sbjct: 98 GNDIHALAAKLLQENDTTLVKTKELIKNY----ITARIMAKRPFDKKSNSALFRAVGEGN 153
Query: 130 AKLADFEKVLIF---------FA-L-EINTLDEALLE----------QSYAQDPLTLK-- 166
A+L V IF F L ++ L+ + L +
Sbjct: 154 AQL-----VAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKV 208
Query: 167 YS------AWIKNIRKI--KKHLLSNDMECLLSDTSQVGREALKRFF--CENIES----L 212
++ W++N K +LLS + C L +G L + + + L
Sbjct: 209 FTQGLNILEWLENPSNTPDKDYLLSIPISCPL-----IGVIQLAHYVVTAKLLGFTPGEL 263
Query: 213 RFKI-----NDQKIPLTKA-------YKSFFDSDREVRKSAAKAL---------SH-TFN 250
R + + Q + +T ++SFF S KA+ + +
Sbjct: 264 RSYLKGATGHSQGL-VTAVAIAETDSWESFFVS-------VRKAITVLFFIGVRCYEAYP 315
Query: 251 KSSHIFSFITNTLAKDE---------------EIQ---DRWRKYEKIADSRHLSNNVEPY 292
+S S + ++L +E ++Q ++ + + + +
Sbjct: 316 NTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSH--LPAGKQVE------ 367
Query: 293 VIEALMQSVKNY----YPKTSHRYYELKKKWLKLDTMYFWDRL----APLPGTSQDIIPF 344
I +L+ KN P++ + L+ L AP G Q IPF
Sbjct: 368 -I-SLVNGAKNLVVSGPPQSLYG----------LNL-----TLRKAKAP-SGLDQSRIPF 409
Query: 345 EVARDLVLQSYAKFSPQMSIIAEKFFTHNWIDAPQYDGKGSGAFAHGTIPSVH-PYILLN 403
R L + +F P + +P F H
Sbjct: 410 S-ERKLKFSN--RFLP--------------VASP---------F--------HSHL---- 431
Query: 404 YLGKPQDVMTLAHELGHGIHFVLSSETQGILTNNSSLTLA-ETASIFGETL------TFD 456
L + I + L S + + TFD
Sbjct: 432 ----------------------LVPASDLINKD-----LVKNNVSFNAKDIQIPVYDTFD 464
Query: 457 -SLLQAASSKEERKILLANKIEDMLNSIVRQISFYDFELKLH----TERRST-------G 504
S L+ S + IV I L + T+ ++T G
Sbjct: 465 GSDLRVLS-------------GSISERIVDCI----IRLPVKWETTTQFKATHILDFGPG 507
Query: 505 DIP-----THRINE------IWLETQKESLGPAFDLS-DLEYG 535
THR + I + D++ D +YG
Sbjct: 508 GASGLGVLTHRNKDGTGVRVI--------VAGTLDINPDDDYG 542
>2o3e_A Neurolysin; thermolysin-like domain, substrate-binding channel,
hydrolase; 2.20A {Rattus norvegicus} PDB: 1i1i_P
Length = 678
Score = 42.0 bits (98), Expect = 4e-04
Identities = 49/266 (18%), Positives = 82/266 (30%), Gaps = 62/266 (23%)
Query: 374 WIDAPQYDGKGSGAFAHGTIPS----------VHPYILLNY---------LGKPQDVMTL 414
++D +GK + A G P +++N+ L + +V T
Sbjct: 413 YLDLYPREGKYNHAACFGLQPGCLLPDGSRMMSVAALVVNFSQPVAGRPSLLRHDEVETY 472
Query: 415 AHELGHGI-HFVLSSETQGILTNNSSLTLAETASIFGETLTFDSLLQAASSKEER--KIL 471
HE GH + ++ N E S E +D SK + +
Sbjct: 473 FHEFGHVMHQICAQTDFARFSGTNVERDFVEVPSQMLENWVWDVDSLRKLSKHYKDGHPI 532
Query: 472 LANKIEDMLNS--------IVRQISFYDFELKLHTERRSTGDIPTHRINEIWLETQKESL 523
+E ++ S +RQI + LHT T + + E L
Sbjct: 533 TDELLEKLVASRLVNTGLLTLRQIVLSKVDQSLHTN-------ATLDAASEYAKYCTEIL 585
Query: 524 GPAFDLSDLEYGSFWMMVPHFIE--SSFYVYAYAFGNCLVNSLYDIYKSNTVDCFKEKYL 581
G A +F H Y Y Y + D++ S CFK++ +
Sbjct: 586 GVAATPGTNMPATF----GHLAGGYDGQY-YGYLWSEVFSM---DMFHS----CFKKEGI 633
Query: 582 -----------NILRAGNSKHYSELL 596
IL+ G S ++L
Sbjct: 634 MNPEVGMKYRNLILKPGGSLDGMDML 659
>2o36_A ThiMet oligopeptidase; thermolysin-like domain, substrate-binding
channel, hydrolase; 1.95A {Homo sapiens} PDB: 1s4b_P
Length = 674
Score = 40.5 bits (94), Expect = 0.001
Identities = 46/262 (17%), Positives = 79/262 (30%), Gaps = 54/262 (20%)
Query: 374 WIDAPQYDGKGSGAFAHGTIPS---------VHPYILLNYLGKP----------QDVMTL 414
++D +GK A G P + ++ KP +V T
Sbjct: 397 YLDLYPREGKYGHAACFGLQPGCLRQDGSRQIAIAAMVANFTKPTADAPSLLQHDEVRTY 456
Query: 415 AHELGHGIHFVLSS-ETQGILTNNSSLTLAETASIFGETLTFD---SLLQAASSKEERKI 470
HE GH +H + S E + E S E ++ L + + +
Sbjct: 457 FHEFGHVMHQLCSQAEFAMFSGTHVETDFVEAPSQMLENWVWEQEPLLRMSRHYRTGSAV 516
Query: 471 L--LANKIEDMLNS-----IVRQISFYDFELKLHTERRSTGDIPTHRINEIWLETQKESL 523
L K+ + + +RQI + LHT+ E + +E L
Sbjct: 517 PRELLEKLIESRQANTGLFNLRQIVLAKVDQALHTQ-------TDADPAEEYARLCQEIL 569
Query: 524 GPAFDLSDLEYGSFWMMVPHFI--ESSFYVYAYAFGNCLVNSLY-------DIYKSNTVD 574
G +F H + Y Y Y + ++ + S
Sbjct: 570 GVPATPGTNMPATF----GHLAGGYDAQY-YGYLWSEVYSMDMFHTRFKQEGVLNSKVGM 624
Query: 575 CFKEKYLNILRAGNSKHYSELL 596
++ ILR G S+ S +L
Sbjct: 625 DYRS---CILRPGGSEDASAML 643
>3dwc_A TCMCP-1, metallocarboxypeptidase; cowrin family of
metallocarboxypeptidases, hydrolase; 2.10A {Trypanosoma
cruzi}
Length = 505
Score = 39.3 bits (91), Expect = 0.002
Identities = 44/376 (11%), Positives = 98/376 (26%), Gaps = 58/376 (15%)
Query: 270 QDRWRKYEKIADSRHLSNNVEPYVIEALMQSVKNYYPKTSHRY------YELKKKWLKLD 323
W+ + D ++ + + H Y YE +LD
Sbjct: 113 HQVWKTCREKNDFAGFLPTLKELIALFREEGKLRAGNSGKHPYEALVDIYEPGMTLQRLD 172
Query: 324 TMYFWDRLAPLPGTS-QDIIPFEVARDLVLQSYAKFSPQMSIIAEKFFTHNWIDAPQYD- 381
+ + + +++ + A ++ + + ++ ++D ++D
Sbjct: 173 EI--FGNVRSWLPELLKEVQEKQKALG---ETVLEPKGPFPVSKQEALCRFFMDVWKFDF 227
Query: 382 -----GKGSGAFAHGTIPSVHPYILLNYLGKPQDVMTLAHELGHGIHFVLSS-------- 428
+ F + V ++ + HE GH +
Sbjct: 228 DGGRLDVSAHPFCGNSKEDVRITTKYTETEFVTSLLGVIHETGHAKYEQNCGPKGFETQP 287
Query: 429 ----------ETQGILTNNSSLTLAETASIFGETLTFDSLLQAASSKEERKILL---ANK 475
E Q + L Q A + K ++ +
Sbjct: 288 VCMARSLGVHEGQSLFAEMQIGRSGAFMEFLAPRLVEYFGDQPAFTSSNMKRVIQRVSPG 347
Query: 476 IEDMLNSIVRQISFYDFELKLHTERRSTGDIPTHRINEIWLETQKESLGPAFDLSDLEYG 535
+ + + ++ + G+I + +W E K LG +D E
Sbjct: 348 LIRIDADELCYPLHVMLRYEIERDLMD-GNIEAEEVPRVWNEKMKSYLGLETLGNDKEGC 406
Query: 536 SFWMMVPHFIESSF-YVYAYAFGNCLVNSLYDIYKSNTVDCFKEKYL------------- 581
H+ F Y Y+ G + L + + + +
Sbjct: 407 LQ---DVHWSGGMFGYFPTYSLGAMVAAQLMSCVRRELGEEVVDDCIRKGDLGKILAKQN 463
Query: 582 -NILRAGNSKHYSELL 596
I + G+S ELL
Sbjct: 464 EKIWQHGSSLTTDELL 479
>1y79_1 Peptidyl-dipeptidase DCP; hinge bending, carboxypeptidase,
neurolysin, ACE, hydrolase; HET: TRP; 2.00A {Escherichia
coli}
Length = 680
Score = 37.8 bits (87), Expect = 0.006
Identities = 40/216 (18%), Positives = 66/216 (30%), Gaps = 38/216 (17%)
Query: 405 LGKPQDVMTLAHELGHGIHFVLSS-ETQGILTNNSSLTLAETASIFGETLTFDSLL---- 459
L DV+TL HE GH +H + + + N+ E S E +
Sbjct: 458 LLLWDDVITLFHEFGHTLHGLFARQRYATLSGTNTPRDFVEFPSQINEHWATHPQVFARY 517
Query: 460 ------QAASSKEERKILLANKIEDMLNSIVRQISFYDFELKLHT--ERRSTGDIPTHRI 511
AA E ++ + + + + +S +++ H E + D+ +
Sbjct: 518 ARHYQSGAAMPDELQQKMRNASLFNKGYEMSELLSAALLDMRWHCLEENEAMQDVDDFEL 577
Query: 512 NEIWLETQKESLGPAFDLSDLEYGSFWMMVPHF--IESSFY---VYAYAFGNCLVNSLY- 565
+ E DL +F I Y YAY + L + Y
Sbjct: 578 RALVAEN-----------MDLPAIPPRYRSSYFAHIFGGGYAAGYYAYLWTQMLADDGYQ 626
Query: 566 -----DIYKSNTVDCFKEKYLNILRAGNSKHYSELL 596
F+E IL GNS+ L
Sbjct: 627 WFVEQGGLTRENGLRFRE---AILSRGNSEDLERLY 659
>3dnz_A Thermolysin; hydrolase, metalloproteinase, calcium, metal-binding,
metalloprotease, protease, secreted, zinc, zymogen; HET:
LYS; 1.20A {Bacillus thermoproteolyticus} PDB: 1kjo_A*
1kjp_A* 1kkk_A* 1kl6_A* 1kr6_A* 1kro_A* 1ks7_A* 1kto_A*
1y3g_E* 1kei_A* 3do0_A* 3do1_A* 3do2_A* 3fb0_A 3fbo_A
2tmn_E* 1fjo_A 1fj3_A 1fjt_A* 1fju_A ...
Length = 316
Score = 32.6 bits (74), Expect = 0.30
Identities = 22/100 (22%), Positives = 37/100 (37%), Gaps = 18/100 (18%)
Query: 370 FTHNWIDAPQYDGKGSG-------------AFAHGTIPSVHPYILLNYLGKPQDVMTLAH 416
+ N + YDG + AF +G+ ++ + +AH
Sbjct: 83 YYKNVHNRLSYDGNNAAIRSSVHYSQGYNNAFWNGSQMVYGDGDGQTFIPLSGGIDVVAH 142
Query: 417 ELGHGIHFVLSSETQGILTNNSSLTLAETAS-IFGETLTF 455
EL H + + T G++ N S + E S IFG + F
Sbjct: 143 ELTHAV----TDYTAGLIYQNESGAINEAISDIFGTLVEF 178
>2vqx_A Metalloproteinase; thermolysin-like structure, zinc, protease,
hydrolase, metalloprotease; 1.82A {Serratia
proteamaculans}
Length = 341
Score = 32.3 bits (73), Expect = 0.39
Identities = 22/109 (20%), Positives = 35/109 (32%), Gaps = 22/109 (20%)
Query: 370 FTHNWIDAPQYDGKGSG-------------AFAHGT--IPSVHPYILLNYLGKPQDVMTL 414
F D +G AF +G + + N DV+
Sbjct: 103 FFWQAFKRNSLDNQGLPLTGSVHYGKEYQNAFWNGQQMVFGDGDGEIFNRFTIAIDVV-- 160
Query: 415 AHELGHGIHFVLSSETQGILTNNSSLTLAETAS-IFGETLTFDSLLQAA 462
H L HG+ + G++ + L E+ S +FG + L Q A
Sbjct: 161 GHALAHGV----TESEAGLIYFQQAGALNESLSDVFGSLVKQFHLKQTA 205
>3hoa_A Thermostable carboxypeptidase 1; proline-rich loop, hydrolase;
2.10A {Thermus thermophilus HB27} PDB: 1wgz_A
Length = 509
Score = 31.2 bits (70), Expect = 0.65
Identities = 32/217 (14%), Positives = 58/217 (26%), Gaps = 39/217 (17%)
Query: 410 DVMTLAHELGHGIHFVLSSETQGILTNNSSLTLAETASIFGETLTFDSLL---------Q 460
++ +E G + + ++ G +L F
Sbjct: 277 EMGHALYEQGLPKEHWGTPRGDAVSLGVHESQSRTWENLVGRSLGFWERFFPRAREVFAS 336
Query: 461 AASSKEERKILLANKIEDMLNSI-VRQISF-------YDFELKLHTERRSTGDIPTHRIN 512
E N +E L + ++++ + EL L S D+P
Sbjct: 337 LGDVSLEDFHFAVNAVEPSLIRVEADEVTYNLHILVRLELELALFRGELSPEDLP----- 391
Query: 513 EIWLETQKESLGPAFDLSDLEYGSFWMMVPHFIESSF-YVYAYAFGNCLVNSLYDIYKSN 571
E W E ++ LG A +Y M H+ F Y Y GN + ++
Sbjct: 392 EAWAEKYRDHLGVAPK----DYKDGVMQDVHWAGGLFGYFPTYTLGNLYAAQFFQKAEAE 447
Query: 572 TVDCFKE----------KYL--NILRAGNSKHYSELL 596
+ I G+ L+
Sbjct: 448 LGPLEPRFARGEFQPFLDWTRARIHAEGSRFRPRVLV 484
>3dte_A IRRE protein; radiotolerance, gene regulation, metallopeptidase;
2.60A {Deinococcus deserti} PDB: 3dti_A 3dtk_A
Length = 301
Score = 30.4 bits (68), Expect = 1.1
Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 5/58 (8%)
Query: 397 HPYILLN-YLGKPQDVMTLAHELGHGIHFVLSSETQGILTNNSSLTLAETASIFGETL 453
H IL+N + + TLAHE+ H L +L++ + ETL
Sbjct: 82 HHVILINSQVRPERQRFTLAHEISH----ALLLGDDDLLSDLHDEYEGDRLEQVIETL 135
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive
structure, iron sulfur proteins, nitrogen fixation;
2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Length = 244
Score = 29.2 bits (65), Expect = 2.7
Identities = 16/117 (13%), Positives = 33/117 (28%), Gaps = 4/117 (3%)
Query: 130 AKLADFEKVLIFFALEINTLDEALLEQSYAQDPLTLKYSAWIKNIRKIKKHLLSNDMECL 189
++A L+ + L +D K A + + E
Sbjct: 128 EQMAADRDYLVRAYVVQRIPPGRLFRFMRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVR 187
Query: 190 LSDTSQVGREALKRFFCENIESLRFKINDQKIP-LTKAYKSFFDSDREVRKSAAKAL 245
S++ + L + ++R + + + D EVR + A L
Sbjct: 188 RIVASRLRGDDLLELLHDPDWTVRLAAVEHASLEALRELD---EPDPEVRLAIAGRL 241
>1mba_A Myoglobin; oxygen storage; HET: HEM; 1.60A {Aplysia limacina} SCOP:
a.1.1.2 PDB: 2fal_A* 3mba_A* 4mba_A* 5mba_A* 2fam_A*
1dm1_A*
Length = 147
Score = 29.2 bits (65), Expect = 2.7
Identities = 21/148 (14%), Positives = 38/148 (25%), Gaps = 25/148 (16%)
Query: 179 KHLLSNDMECLLSDTSQVGREALKRFFCENIESLRFKINDQKIPLTKAYKSFFDSDREVR 238
L + ++ + G + L F + +S F + F
Sbjct: 8 ADLAGKSWAPVFANKNANGLDFLVALFEKFPDSANF------------FADFKGKSVADI 55
Query: 239 KSAAKALSHTFNKSSHIFSFITNTLAKDEEIQDRWRKYEKIADSRHLSNNVEP----YVI 294
K++ K SS IF+ + + + A H+ V V
Sbjct: 56 KASPKLRDV----SSRIFTRLNEFVNNAANAGKMSAMLSQFAK-EHVGFGVGSAQFENVR 110
Query: 295 EALMQSVKNYYPKTSHRYYELKKKWLKL 322
V + + W KL
Sbjct: 111 SMFPGFVASVAAPPA----GADAAWTKL 134
>2yyu_A Orotidine 5'-phosphate decarboxylase; TIM barrel, structural
genomics, NPPSFA; HET: C5P; 2.20A {Geobacillus
kaustophilus} PDB: 2yyt_A*
Length = 246
Score = 29.0 bits (64), Expect = 2.8
Identities = 22/159 (13%), Positives = 48/159 (30%), Gaps = 9/159 (5%)
Query: 140 IFFALEINTLDEAL-LEQSYAQDPLTLK------YSAWIKNIRKIKKHLLSNDMECLLSD 192
AL+ + E + +A PL +K Y + +K+ + ++ L D
Sbjct: 7 FIVALDFPSKQEVERFLRPFAGTPLFVKVGMELYYQEGPAIVAFLKEQGHAVFLDLKLHD 66
Query: 193 TSQVGREALKRFFCENIESLRFKINDQKIPLTKAYKSFFDSDREVRKSAAKALSHTFNKS 252
++A+K + + + + A + R + ++ T S
Sbjct: 67 IPNTVKQAMKGLARVGADLVNVHAAGGRRMMEAAIEGLDAGTPSGRMR-PRCIAVTQLTS 125
Query: 253 SHIFSFITNTLAKDEEIQDRWRKYEKIADSRHLSNNVEP 291
+ L + + Y +A L V
Sbjct: 126 TDERML-HEELWISRPLVETVAHYAALAKESGLDGVVCS 163
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 3.3
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 9/32 (28%)
Query: 198 REALKRFFCENIE-SLRFKINDQKIP-LT-KA 226
++ALK+ ++ SL+ +D P L KA
Sbjct: 19 KQALKK-----LQASLKLYADDSA-PALAIKA 44
>2dc3_A Cytoglobin; myoglobin, heme, oxygen transport, oxygen storage,
riken structural genomics/proteomics initiative, RSGI,
structural genomics; HET: HEM; 1.68A {Homo sapiens} PDB:
1v5h_A* 1urv_A* 1umo_A* 1ury_A* 1ut0_A* 1ux9_A*
Length = 193
Score = 28.9 bits (64), Expect = 3.4
Identities = 19/135 (14%), Positives = 39/135 (28%), Gaps = 23/135 (17%)
Query: 179 KHLLSNDMECLLSDTSQVGREALKRFFCENIESLRFKINDQKIPLTKAYKSFFD--SDRE 236
+ + L ++ VG L RFF P K Y S F D
Sbjct: 27 RKAVQAMWARLYANCEDVGVAILVRFFVNF-------------PSAKQYFSQFKHMEDPL 73
Query: 237 VRKSAAKALSHTFNKSSHIFSFITNTLAKDEEIQDRWRKYEKIADSRHLSNNVEPY---- 292
+ + + H + + + + + + + L + VEP
Sbjct: 74 EMERSPQLRKH----ACRVMGALNTVVENLHDPDKVSSVLALVGKAHALKHKVEPVYFKI 129
Query: 293 VIEALMQSVKNYYPK 307
+ +++ V +
Sbjct: 130 LSGVILEVVAEEFAS 144
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum,
structural proteomics, heat-like repeat; NMR
{Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Length = 131
Score = 29.0 bits (64), Expect = 3.6
Identities = 13/94 (13%), Positives = 34/94 (36%), Gaps = 13/94 (13%)
Query: 221 IPLTKAYKSFFDSDREVRKSAAKALSHTFNKSSHIFSFITNTLAKDEEIQDRWRKYEKIA 280
+P D ++ VR+ + ALS +++ + +E+ + R A
Sbjct: 15 VPRGSHMA---DENKWVRRDVSTALSRMGDEA--FEPLL--ESLSNEDWRIRG------A 61
Query: 281 DSRHLSNNVEPYVIEALMQSVKNYYPKTSHRYYE 314
+ + N + +E L++ +++
Sbjct: 62 AAWIIGNFQDERAVEPLIKLLEDDSGFVRSGAAR 95
Score = 28.2 bits (62), Expect = 5.7
Identities = 22/100 (22%), Positives = 36/100 (36%), Gaps = 16/100 (16%)
Query: 151 EALLEQSYAQDPLTLKYSAWIKNIRKIKKHLLSNDMECLLSDTSQVGREALKRFFCENIE 210
E LLE +D +AWI + ++ + + LL D S R
Sbjct: 45 EPLLESLSNEDWRIRGAAAWIIGNFQDERAV--EPLIKLLEDDSGFVRSGA-------AR 95
Query: 211 SLRFKINDQKI--PLTKAYKSFFDSDREVRKSAAKAL-SH 247
SL +I +++ + K + RK A L +H
Sbjct: 96 SLE-QIGGERVRAAMEKLAE---TGTGFARKVAVNYLETH 131
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger,
ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2
Length = 1230
Score = 29.0 bits (63), Expect = 3.6
Identities = 11/104 (10%), Positives = 26/104 (25%), Gaps = 6/104 (5%)
Query: 175 RKIKKHLLSNDMECLLSDTSQVGREALKRFFCENIESLRFKINDQKIP-LTKAYKSFFDS 233
+ K + + + + + + + LT
Sbjct: 128 ANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSP 187
Query: 234 DREVRKSAAKALSHTFNKSS-----HIFSFITNTLAKDEEIQDR 272
VRK AL H + + + L+K++ +
Sbjct: 188 RLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTT 231
>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH
domain, EF hand, TIM barrel, C2 domain, GTPase, lipase,
C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}
Length = 885
Score = 28.9 bits (64), Expect = 3.7
Identities = 21/117 (17%), Positives = 44/117 (37%), Gaps = 24/117 (20%)
Query: 170 WIKNIRKIKKHLLSNDMECLLSDTSQVGREALKRFFCENIESLRFKIN-DQKIPLTKAYK 228
W + + K+ ++L+ + F + L+ ++N D +IP+ K
Sbjct: 130 WSEELFKLAMNILAQNAS-------------RNTFLRKAYTKLKLQVNQDGRIPV-KNIL 175
Query: 229 SFFDSDREVRKSAAKALSHTFNKSSHI---------FSFITNTLAKDEEIQDRWRKY 276
F +D++ ++A ++ FN+S I F N L +I +
Sbjct: 176 KMFSADKKRVETALESCGLKFNRSESIRPDEFSLEIFERFLNKLCLRPDIDKILLEI 232
>3bf2_A Putative lipoprotein; NESG, MR36A, structural genomics, PSI-2,
protein structure initiative; 2.60A {Neisseria
meningitidis FAM18}
Length = 152
Score = 28.7 bits (64), Expect = 3.8
Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 2/56 (3%)
Query: 433 ILTNNSSLTLAETASIFGETLTFDSLLQAASSKEERKILLANKIEDMLNSIVRQIS 488
+L + T S+ L + +EE L A +D IVR+++
Sbjct: 86 VLKRGEPVGKPMTVSVR-RVLAYADNEILGKQEEEA-ALWAEMRQDAAEQIVRRLT 139
>2a9d_A Sulfite oxidase; molybdopterin, molybdenum, oxidoreductase; HET:
MTE; 1.70A {Gallus gallus} SCOP: b.1.18.6 d.176.1.1 PDB:
2a9a_A* 2a99_A* 2a9b_A* 2a9c_A*
Length = 372
Score = 28.6 bits (63), Expect = 4.8
Identities = 13/112 (11%), Positives = 30/112 (26%), Gaps = 2/112 (1%)
Query: 38 RWNLEDLYPSHDSQEISNDMECIEHESLAFKT--RWEGNLAHATNQKNCHSLGAAIAEYE 95
+L +L E++ ++C + +G GA + +
Sbjct: 70 SLSLAELRSRFPKHEVTATLQCAGNRRSEMSRVRPVKGLPWDIGAISTARWGGARLRDVL 129
Query: 96 RICELIGRIASYAMLSYNCNLSSPTIRKFYTDINAKLADFEKVLIFFALEIN 147
+ + + + P + I A + A E+N
Sbjct: 130 LHAGFPEELQGEWHVCFEGLDADPGGAPYGASIPYGRALSPAADVLLAYEMN 181
>1or7_C Sigma-E factor negative regulatory protein, RNA polymerase sigma-E
factor; regulation, DNA-binding, transmembrane,
transcription; 2.00A {Escherichia coli} SCOP: a.180.1.1
Length = 90
Score = 28.3 bits (63), Expect = 4.8
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 259 ITNTLAKDEEIQDRWRKYEKIADSRH 284
+ N LA + E+Q W Y I DS
Sbjct: 19 LLNELAHNPEMQKTWESYHLIRDSMR 44
>2qez_A Ethanolamine ammonia-lyase heavy chain; YP_013784.1, ethanolamine
ammonia lyase large subunit (EUTB), structural genomics;
HET: MSE; 2.15A {Listeria monocytogenes str}
Length = 455
Score = 28.1 bits (63), Expect = 5.6
Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 21/58 (36%)
Query: 445 TASIFGETLTFDSLLQ-----------------AASSKEER---KILLAN-KIEDMLN 481
++FG T F S+ AA S EER K++L+ + D+ N
Sbjct: 5 KTNLFGHTYQFKSITDVLAKANEEKSGDRLAGVAAESAEERVAAKVVLSKMTLGDLRN 62
>3nqx_A MCP-02, secreted metalloprotease MCP02; zinc metalloprotease,
alpha/beta protein, hydrolase; 1.70A {Pseudoalteromonas
SP} PDB: 3nqy_B 3nqz_B
Length = 306
Score = 28.1 bits (62), Expect = 5.7
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 5/42 (11%)
Query: 415 AHELGHGIHFVLSSETQGILTNNSSLTLAETAS-IFGETLTF 455
AHE+ HG + + G++ N L E S + GE F
Sbjct: 140 AHEVSHGF----TEQNSGLIYNGKPGGLNEAFSDMAGEAAEF 177
>1of5_A MRNA export factor MEX67; nuclear protein, repeat, leucine- rich
repeat, nuclear transport; 2.8A {Saccharomyces
cerevisiae} SCOP: d.17.4.2
Length = 221
Score = 28.1 bits (62), Expect = 5.9
Identities = 17/108 (15%), Positives = 34/108 (31%), Gaps = 22/108 (20%)
Query: 225 KAYKSFFDSDREVRKSAAKALSHTFNKSSHIFSFITNTLAKDEEIQD-----RWRKYEKI 279
+ + +D++RE + S FS ++ + D + Y
Sbjct: 19 TNFLNLWDNNREQLLNLYSPQS--------QFSVSVDSTIPPSTVTDSDQTPAFGYYMS- 69
Query: 280 ADSRHLSNNVEPYVIEALMQSVK-------NYYPKTSHRYYELKKKWL 320
SR++S I+ + + PKT H E ++
Sbjct: 70 -SSRNISKVSSEKSIQQRLSIGQESINSIFKTLPKTKHHLQEQPNEYS 116
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule,
XMAP215, STU2, DIS1, microtubule associated protein,
structural protein; 1.90A {Caenorhabditis elegans}
Length = 266
Score = 28.2 bits (62), Expect = 6.0
Identities = 9/78 (11%), Positives = 16/78 (20%)
Query: 168 SAWIKNIRKIKKHLLSNDMECLLSDTSQVGREALKRFFCENIESLRFKINDQKIPLTKAY 227
+ ++ + L + R I +
Sbjct: 154 DIVNVLSDVVGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISPLKSLSVEKTVA 213
Query: 228 KSFFDSDREVRKSAAKAL 245
D D VR +A L
Sbjct: 214 PFVGDKDVNVRNAAINVL 231
>3hq2_A Bacillus subtilis M32 carboxypeptidase; hydrolase, metal-binding,
metalloprotease, protease, zinc; 2.90A {Bacillus
subtilis}
Length = 501
Score = 28.0 bits (62), Expect = 6.7
Identities = 50/365 (13%), Positives = 110/365 (30%), Gaps = 71/365 (19%)
Query: 270 QDRWRKYEKIADSRHLSNNVEPYV----IEALMQSVKNYYPKTSHRYYELKKKWLKLDTM 325
+ W + + +D S +E + + + +E LD +
Sbjct: 114 ETAWEEAKGKSDFSLFSPYLEQLIEFNKRFITYWGYQEHPYDALLDLFEPGVTVKVLDQL 173
Query: 326 YFWDRLAPLPGTSQDIIPFEVARDLVLQSYAKFSPQMSIIAEKFFTHNWIDAPQYDGKGS 385
+ A L ++ +V + + +K + ++ YD
Sbjct: 174 F-----AELKEAIIPLVK-QVTASGNKPDTSFITKAFPKEKQKELSLYFLQELGYD---- 223
Query: 386 GAFAHGTIP-SVHPYILLNYLGK------------PQDVMTLAHELGHGIHFVLSSETQG 432
F G + +VHP+ G + HE GH I+ Q
Sbjct: 224 --FDGGRLDETVHPFATTLNRGDVRVTTRYDEKDFRTAIFGTIHECGHAIYE------QN 275
Query: 433 I--------LTNNSSLTLAETASIFGETLTFDS---------LLQAASSKEERKILLAN- 474
I L++ +S+ + E+ S+F E + +Q AS + + I L +
Sbjct: 276 IDEALSGTNLSDGASMGIHESQSLFYENFIGRNKHFWTPYYKKIQEASPVQFKDISLDDF 335
Query: 475 -----KIEDMLNSIVRQISFYDFELKLHTERRS---TGDIPTHRINEIWLETQKESLGPA 526
+ + + Y + + E + ++ + +W + ++ LG
Sbjct: 336 VRAINESKPSFIRVEADELTYPLHIIIRYEIEKAIFSNEVSVEDLPSLWNQKYQDYLG-- 393
Query: 527 FDLSDLEYGSFWMMVPHFIESSFYVY-AYAFGNCLVNSLYDIYKSNTVDCFKEKYLNILR 585
++ + H+ F + +YA G L + + + +L
Sbjct: 394 --ITPQTDAEGILQDVHWAGGDFGYFPSYALGYMYAAQLKQKMLEDLPE-----FDALLE 446
Query: 586 AGNSK 590
G
Sbjct: 447 RGEFH 451
>1bqb_A Protein (aureolysin); hydrolase, metalloproteinase; 1.72A
{Staphylococcus aureus} SCOP: d.92.1.2
Length = 301
Score = 28.0 bits (62), Expect = 6.8
Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Query: 410 DVMTLAHELGHGIHFVLSSETQGILTNNSSLTLAETAS-IFG 450
+AHE+ HG+ + +T + + S L E+ S +FG
Sbjct: 138 ANDVVAHEITHGV----TQQTANLEYKDQSGALNESFSDVFG 175
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.319 0.134 0.396
Gapped
Lambda K H
0.267 0.0523 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 5,391,849
Number of extensions: 251003
Number of successful extensions: 863
Number of sequences better than 10.0: 1
Number of HSP's gapped: 802
Number of HSP's successfully gapped: 67
Length of query: 626
Length of database: 5,693,230
Length adjustment: 98
Effective length of query: 528
Effective length of database: 3,317,318
Effective search space: 1751543904
Effective search space used: 1751543904
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.4 bits)