HHsearch alignment for GI: 254780916 and conserved domain: CHL00095
>CHL00095 clpC Clp protease ATP binding subunit.
Probab=99.26 E-value=1.5e-11 Score=101.32 Aligned_cols=223 Identities=14% Similarity=0.220 Sum_probs=156.5
Q ss_pred CCCCCCCCCCCCCCCCCCCC----CCCCEEE---EEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 11122222222222222223----4432048---8732777436799999984267543321012346554210024331
Q gi|254780916|r 140 DSLIAVSPAMIQVVDLARKA----GDCAIPI---MIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLF 212 (482)
Q Consensus 140 ~~LiG~S~~m~~v~~~i~~~----a~~~~~v---li~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lF 212 (482)
T Consensus 509 ~~ViGQd~AI~~vs~ai~rsraGl~~~~rPigsFlf~GPTGvGKTElAK~LA~~LFg~e~~liR~DMSEy~E~hsvsrLI 588 (823)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFIFCGPTGVGKTELTKALASYFFGSEEAMIRLDMSEYMEKHTVSKLI 588 (823)
T ss_pred HHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHC
T ss_conf 78407699999999999999708998999746899878998877999999999974782025885351015542076745
Q ss_pred CCCCCCCCCCCCCCCCC----CCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCE---EEEECCCCC
Q ss_conf 12555532211100123----44667147516642001889998888776420011235532123431---565214332
Q gi|254780916|r 213 GDVDLQTKNSAQFLGKF----IEANGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVR---LIFLTEKNL 285 (482)
Q Consensus 213 G~~~~~~~~~~~~~g~~----~~a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~R---iIa~t~~~L 285 (482)
T Consensus 589 GaPPGYVGy~e--GG~LTeaVrr~PysVvLfDEIEKAHpdV~nilLQvlDdG~Lt---D~~Gr~vdF~NtIIImTSNlGs 663 (823)
T CHL00095 589 GSPPGYVGYNE--GGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLT---DSKGRTIDFKNTLIIMTSNLGS 663 (823)
T ss_pred CCCCCCCCCCC--CCCHHHHHHCCCCEEEEECHHHHCCHHHHHHHHHHCCCCCCC---CCCCCEEECEEEEEEECCCCCH
T ss_conf 89987667787--882019887199869986213113889999887651688434---8999988431039997165055
Q ss_pred CCC--------------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 111--------------------------------111233379998865433446778774422225566777641011
Q gi|254780916|r 286 LPQ--------------------------------VKSHVFRKDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTK 333 (482)
Q Consensus 286 ~~~--------------------------------~~~g~fr~dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~~~ 333 (482)
T Consensus 664 ~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFlnRiDeii~F-~~L~--~~~l~~Iv~~~l~~l~~r 740 (823)
T CHL00095 664 KVIEKGGGSLGFKLLEDGTKLDEKQYKRLSNLVNEELKQYFRPEFLNRLDEIIVF-RPLT--KDEVWEIAEIMLKELFKR 740 (823)
T ss_pred HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHCCEEEEE-CCCC--HHHHHHHHHHHHHHHHHH
T ss_conf 8887413443433344543220235899999999999843798787327827861-8999--999999999999999999
Q ss_pred CCCC--CCCCCCCCCCCCCCCCC-C-CCHHHHHHHHHHHHH
Q ss_conf 2233--33211111000122338-9-868999999999987
Q gi|254780916|r 334 NAIK--QISISDKALSLLTKYPW-I-DNVQELKNILLRAVI 370 (482)
Q Consensus 334 ~~~~--~~~ls~~a~~~L~~y~W-P-GNvREL~n~i~r~~i 370 (482)
T Consensus 741 l~~~~i~l~~~~~a~~~l~~~gy~~~~GARpl~R~I~~~i~ 781 (823)
T CHL00095 741 LNNQGIQLEVDERFKTLLAKEGYNPLYGARPLRRAIMRLLE 781 (823)
T ss_pred HHHCCCEEEECHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf 99689859988899999999587977681368899999988