HHsearch alignment for GI: 254780916 and conserved domain: CHL00181

Probab=98.82  E-value=1.8e-08  Score=79.55  Aligned_cols=166  Identities=18%  Similarity=0.223  Sum_probs=96.8

Q ss_pred             CCCEEEEEECCCCCHHHHHHHH----HHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf             4320488732777436799999----984267543321012346554210024331125555322111001234466714
Q gi|254780916|r  161 DCAIPIMIQGEFGVGKKRLSRF----IHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQFLGKFIEANGGT  236 (482)
Q Consensus       161 ~~~~~vli~Ge~GtGK~~~A~~----iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~~~~~~~~~~~~g~~~~a~~Gt  236 (482)
T Consensus        57 ~~s~h~vF~GnPGTGKTTVARl~a~il~~lG~L~~g~vve~~r~dLvg~y--------v-G~Ta--~kt~~~i~~a~GGV  125 (287)
T CHL00181         57 SPGLHMSFTGSPGTGKTTVALKMADILYRLGYIKKGHLITVTRDDLVGQY--------I-GHTA--PKTKEVLKKAMGGV  125 (287)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHCCCC--------C-CCCH--HHHHHHHHHCCCCE
T ss_conf             87653888789986799999999999998699558958995358841635--------3-5216--99999999645987


Q ss_pred             EEECCCCHHH---------HHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             7516642001---------8899988887764200112355321234315652143321111112333799988654334
Q gi|254780916|r  237 IVLEEPDALP---------LAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRKDLYYRISVFLI  307 (482)
Q Consensus       237 l~l~ei~~L~---------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~~~~g~fr~dLy~rL~~~~i  307 (482)
T Consensus       126 LfIDEAY~L~~~~~~~dfg~eaidtLl~~me~~~--------~---~lvvI~AGY~~--e-M~--~fl-------~----  178 (287)
T CHL00181        126 LFIDEAYYLYKPDNERDYGAEAIEILLQVMENQR--------D---DLVVIFAGYKD--R-MD--KFY-------E----  178 (287)
T ss_pred             EEEECHHHHCCCCCCCCCHHHHHHHHHHHHHHCC--------C---CEEEEEECCHH--H-HH--HHH-------H----
T ss_conf             9982446535788999837999999999987079--------9---88999846789--9-99--999-------8----


Q ss_pred             HHHHHHHHH-----------HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC-------CCCCCCHHHHHHHHHHHH
Q ss_conf             467787744-----------22225566777641011223333211111000122-------338986899999999998
Q gi|254780916|r  308 NISTLRSRS-----------EDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTK-------YPWIDNVQELKNILLRAV  369 (482)
Q Consensus       308 ~iPpLReR~-----------eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~-------y~WPGNvREL~n~i~r~~  369 (482)
T Consensus       179 ~NpGL~sRf~~~i~F~dYt~~EL~~I~~~~~~~~----~---~~l~~~a~~~l~~~~~~~~~~~~FGNaR~vrnl~e~a~  251 (287)
T CHL00181        179 SNPGLSSRVANHVDFPDYTPEELLQIAKMMLEEQ----Q---YQLTPEAEKVLLDYIKRRMEQPLFANARSVRNAIDRAR  251 (287)
T ss_pred             HCCCHHHHCCCEEECCCCCHHHHHHHHHHHHHHC----C---CCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf             5904787688723779859999999999999986----9---82587999999999998508999874899999999999


Q ss_pred             HH
Q ss_conf             74
Q gi|254780916|r  370 IG  371 (482)
Q Consensus       370 i~  371 (482)
T Consensus       252 ~~  253 (287)
T CHL00181        252 MR  253 (287)
T ss_pred             HH
T ss_conf             99