HHsearch alignment for GI: 254780916 and conserved domain: CHL00195
>CHL00195 ycf46 Ycf46; Provisional.
Probab=99.07 E-value=4e-10 Score=91.15 Aligned_cols=184 Identities=14% Similarity=0.207 Sum_probs=113.5
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCC---CCCCCCEEE
Q ss_conf 32048873277743679999998426754332101234655421002433112555532211100123---446671475
Q gi|254780916|r 162 CAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQFLGKF---IEANGGTIV 238 (482)
Q Consensus 162 ~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~~~~~~~~~~~~g~~---~~a~~Gtl~ 238 (482)
T Consensus 258 ~PkGvLL~GpPG~GKtl~AKAvA~e~---~~p~l~l~~~~l-----~~~~vGesE------~~~r~~f~~A~~~aP~ilf 323 (491)
T CHL00195 258 TPRGLLLVGIQGTGKSLTAKAIANEW---NLPLLRLDVGKL-----FGGIVGESE------SRMRQMIQLAETISPCILW 323 (491)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH---CCCEEEEEHHHH-----HHHHCCHHH------HHHHHHHHHHHHHCCEEEE
T ss_conf 99879997999987899999998663---894699667997-----560067049------9999999999861985899
Q ss_pred ECCCCHH-H-----------HHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCC---CCCCCCHHHHHHHHHHHHH
Q ss_conf 1664200-1-----------88999888877642001123553212343156521433---2111111233379998865
Q gi|254780916|r 239 LEEPDAL-P-----------LAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKN---LLPQVKSHVFRKDLYYRIS 303 (482)
Q Consensus 239 l~ei~~L-~-----------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~---L~~~~~~g~fr~dLy~rL~ 303 (482)
T Consensus 324 iDEidk~~~~~~~~~d~g~s~rv~~~~Lt~m~e-----------~~~~VfViattN~~~~L~pellR~GRFD~~~~---- 388 (491)
T CHL00195 324 IDEIDKAFSGLDSKGDSGTSNRVLATFITWLSE-----------KKSPVFVVATANNIDSLPLELLRKGRFDEIFF---- 388 (491)
T ss_pred EEHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCC-----------CCCCEEEEEECCCCCCCCHHHCCCCCCCEEEE----
T ss_conf 746545425888888872328999999998646-----------89976999958997558987708987770476----
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH--HCCCCCCCHHH
Q ss_conf 4334467787744222255667776410112233332111110001223389868999999999987--43898106889
Q gi|254780916|r 304 VFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQELKNILLRAVI--GLKDSHLTEDR 381 (482)
Q Consensus 304 ~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvREL~n~i~r~~i--~~~~~~i~~~~ 381 (482)
T Consensus 389 ---v~lP~~~~R~~----I~~ihl~~~~~~---~~~~~d~~~la~-~t~gfsG--AeIe~~v~~A~~~A~~~~r~~~~~d 455 (491)
T CHL00195 389 ---LDLPNLEEREL----IFKIHLKRFRPN---SWQNYDIEILSQ-LTNKFSG--AEIEQSIIEAMHHAFSEKREFTTED 455 (491)
T ss_pred ---CCCCCHHHHHH----HHHHHHHCCCCC---CCCCCCHHHHHH-HCCCCCH--HHHHHHHHHHHHHHHHCCCCCCHHH
T ss_conf ---48959899999----999998544788---755469999997-6859888--9999999999999987588665899
Q ss_pred HHHHHC
Q ss_conf 545421
Q gi|254780916|r 382 FVLLLS 387 (482)
Q Consensus 382 ~~~~l~ 387 (482)
T Consensus 456 l~~a~~ 461 (491)
T CHL00195 456 ICLALK 461 (491)
T ss_pred HHHHHH
T ss_conf 999998