HHsearch alignment for GI: 254780916 and conserved domain: COG1221
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms].
Probab=100.00 E-value=0 Score=545.41 Aligned_cols=328 Identities=29% Similarity=0.414 Sum_probs=281.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCC-CCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 21111111122222222222222223443204887327774367999999842675-43321012346554210024331
Q gi|254780916|r 134 NEHCALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKR-AFFPFFIVNCGMIDQDKIEKFLF 212 (482)
Q Consensus 134 ~~~~~~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r-~~~~fi~v~c~~~~~~~~e~~lF 212 (482)
T Consensus 72 ~~~~~~~~LIG~~~~~~~~~eqik~~ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~~~eLF 151 (403)
T COG1221 72 LKSEALDDLIGESPSLQELREQIKAYAPSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQEAELF 151 (403)
T ss_pred CCCHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEEHHHHCCCHHHHHHH
T ss_conf 02215666635688899999999861899984798668875388999999986121358987997777737677777773
Q ss_pred CCCCC-CCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCH
Q ss_conf 12555-53221110012344667147516642001889998888776420011235532123431565214332111111
Q gi|254780916|r 213 GDVDL-QTKNSAQFLGKFIEANGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKS 291 (482)
Q Consensus 213 G~~~~-~~~~~~~~~g~~~~a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~~~~ 291 (482)
T Consensus 152 G~~kGaftGa~~~k~Glfe~A~GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~rvG~~~~~~~dVRli~AT~~~l~~~~~~ 231 (403)
T COG1221 152 GHEKGAFTGAQGGKAGLFEQANGGTLFLDEIHRLPPEGQEKLLRVLEEGEYRRVGGSQPRPVDVRLICATTEDLEEAVLA 231 (403)
T ss_pred CCCCCEEECCCCCCCCHHEECCCCEEEHHHHHHCCHHHHHHHHHHHHCCCEEECCCCCCCCCCCEEEECCCCCHHHHHHH
T ss_conf 20000002566786764205279777656365379858999999987186576688888677740451356687999874
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 23337999886543344677877442222556677764101122333321111100012233898689999999999874
Q gi|254780916|r 292 HVFRKDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQELKNILLRAVIG 371 (482)
Q Consensus 292 g~fr~dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvREL~n~i~r~~i~ 371 (482)
T Consensus 232 g---~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~~y~~pGNirELkN~Ve~~~~~ 308 (403)
T COG1221 232 G---ADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALLAYDWPGNIRELKNLVERAVAQ 308 (403)
T ss_pred H---CCHHHHHCCCEECCCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf 0---5255641675431897243555599999999999999739998888899999998488998399999999999997
Q ss_pred CCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 38981068895454212445432234322222233444321000000001123444543258999999999999999828
Q gi|254780916|r 372 LKDSHLTEDRFVLLLSREGKKEREFHTETACTCYTEGKSSDTILDNLSQESIPAIGQDGEVRRLSDIEKEIIGLAMKLYR 451 (482)
Q Consensus 372 ~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~E~~~I~~aL~~~~ 451 (482)
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~----~--~~--~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 372 (403)
T COG1221 309 ASGEGQDLEDLIISIRLDELPGL----N--DV--PAGIS--------LQLNLPELPLSLRETSLEQVEERLLQKALEQNK 372 (403)
T ss_pred HCCCCCCCCCCCCHHHHCCCCCC----C--CC--HHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 35456785102211221136543----3--31--01101--------233267776655533346789988899999852
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHHCCCCC
Q ss_conf 72789997848998899999998188814
Q gi|254780916|r 452 AQMSEVARRLGIGRSTLYRKIREYNIEVD 480 (482)
Q Consensus 452 Gn~~~aA~~LGIsR~tL~rKlk~~gi~~d 480 (482)
T Consensus 373 ~~~~~~~~~lg~s~~~l~~~l~~~~~~~~ 401 (403)
T COG1221 373 GNKKKAARLLGISRKTLRYRLKKYGLTTF 401 (403)
T ss_pred CCHHHHHHHCCCCHHHHHHHHHHHCCCCC
T ss_conf 02999998839989999999987033336