HHsearch alignment for GI: 254780916 and conserved domain: COG1222
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones].
Probab=98.63 E-value=7.5e-08 Score=75.11 Aligned_cols=217 Identities=18% Similarity=0.213 Sum_probs=134.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCC-----------CCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 2211111111222222222222222234-----------43204887327774367999999842675433210123465
Q gi|254780916|r 133 ENEHCALDSLIAVSPAMIQVVDLARKAG-----------DCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGM 201 (482)
Q Consensus 133 ~~~~~~~~~LiG~S~~m~~v~~~i~~~a-----------~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~ 201 (482)
T Consensus 144 e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~---T~AtFIrvvgSE 220 (406)
T COG1222 144 EKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQ---TDATFIRVVGSE 220 (406)
T ss_pred CCCCCCHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHC---CCCEEEEECCHH
T ss_conf 58987865335889999999998403366888999749999971276689997588999998720---586699942199
Q ss_pred CCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCC---CCEEEECCCCHH-----------HHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 54210024331125555322111001234466---714751664200-----------1889998888776420011235
Q gi|254780916|r 202 IDQDKIEKFLFGDVDLQTKNSAQFLGKFIEAN---GGTIVLEEPDAL-----------PLAVQGRIYNFIETGKIEFFDS 267 (482)
Q Consensus 202 ~~~~~~e~~lFG~~~~~~~~~~~~~g~~~~a~---~Gtl~l~ei~~L-----------~~~~Q~~Ll~~l~~~~~~~~g~ 267 (482)
T Consensus 221 lV-----qKYiGE-----GaRl-VRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~ql-----DG 284 (406)
T COG1222 221 LV-----QKYIGE-----GARL-VRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQL-----DG 284 (406)
T ss_pred HH-----HHHHCC-----CHHH-HHHHHHHHHHCCCEEEEEECHHHHHCCCCCCCCCCHHHHHHHHHHHHHHC-----CC
T ss_conf 99-----998341-----1699-99999987414984999831122311113688885099999999999860-----58
Q ss_pred CCCCCCCCEEEEECCCC--C-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 53212343156521433--2-11111123337999886543344677877442222556677764101122333321111
Q gi|254780916|r 268 RGAIRLDVRLIFLTEKN--L-LPQVKSHVFRKDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDK 344 (482)
Q Consensus 268 ~~~~~~~~RiIa~t~~~--L-~~~~~~g~fr~dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~ 344 (482)
T Consensus 285 FD~-~~nvKVI~ATNR~D~LDPALLRPGR~DR-------kIEfplPd~~gR~~-I-------l~IHtrkM~l~-~dvd~e 347 (406)
T COG1222 285 FDP-RGNVKVIMATNRPDILDPALLRPGRFDR-------KIEFPLPDEEGRAE-I-------LKIHTRKMNLA-DDVDLE 347 (406)
T ss_pred CCC-CCCEEEEEECCCCCCCCHHHCCCCCCCC-------EEECCCCCHHHHHH-H-------HHHHHHHCCCC-CCCCHH
T ss_conf 897-8876899855885555766508875453-------01168989789999-9-------99876214676-676999
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHH---CCCCCCCHHHHHHHHCC
Q ss_conf 100012233898689999999999874---38981068895454212
Q gi|254780916|r 345 ALSLLTKYPWIDNVQELKNILLRAVIG---LKDSHLTEDRFVLLLSR 388 (482)
Q Consensus 345 a~~~L~~y~WPGNvREL~n~i~r~~i~---~~~~~i~~~~~~~~l~~ 388 (482)
T Consensus 348 ~la~~~~---g~sGAdlkaictEAGm~AiR~~R~~Vt~~DF~~Av~K 391 (406)
T COG1222 348 LLARLTE---GFSGADLKAICTEAGMFAIRERRDEVTMEDFLKAVEK 391 (406)
T ss_pred HHHHHCC---CCCHHHHHHHHHHHHHHHHHHCCCEECHHHHHHHHHH
T ss_conf 9987538---9956779999998759999860473339999999999