HHsearch alignment for GI: 254780916 and conserved domain: COG1342
>COG1342 Predicted DNA-binding proteins [General function prediction only].
Probab=91.90 E-value=0.37 Score=27.83 Aligned_cols=39 Identities=23% Similarity=0.348 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 899999999999999982872789997848998899999998
Q gi|254780916|r 433 RRLSDIEKEIIGLAMKLYRAQMSEVARRLGIGRSTLYRKIRE 474 (482)
Q Consensus 433 ~~l~e~E~~~I~~aL~~~~Gn~~~aA~~LGIsR~tL~rKlk~ 474 (482)
T Consensus 34 lt~eElEAlR---LvD~~~l~QeeAA~rMgISr~Tfwr~l~s 72 (99)
T COG1342 34 LTIEELEALR---LVDYEGLTQEEAALRMGISRQTFWRLLTS 72 (99)
T ss_pred ECHHHHHHHH---HHHHHHCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 2299988999---88686105789999846429999999999