HHsearch alignment for GI: 254780916 and conserved domain: COG1474
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones].
Probab=97.44 E-value=0.00037 Score=49.02 Aligned_cols=202 Identities=18% Similarity=0.211 Sum_probs=107.8
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCC-CCCCC-CCCCCCCCCCCC-CCHHHHHCCC-C-CCCCCCCCC----CCCCCCCCCC
Q ss_conf 488732777436799999984267-54332-101234655421-0024331125-5-553221110----0123446671
Q gi|254780916|r 165 PIMIQGEFGVGKKRLSRFIHESGK-RAFFP-FFIVNCGMIDQD-KIEKFLFGDV-D-LQTKNSAQF----LGKFIEANGG 235 (482)
Q Consensus 165 ~vli~Ge~GtGK~~~A~~iH~~s~-r~~~~-fi~v~c~~~~~~-~~e~~lFG~~-~-~~~~~~~~~----~g~~~~a~~G 235 (482)
T Consensus 44 n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~ 123 (366)
T COG1474 44 NIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGK 123 (366)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 07998899987328999999999733156757999513078787999999998268997676326899999997774187
Q ss_pred E--EEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4--75166420018899988887764200112355321234315652143321111112333799988654334467787
Q gi|254780916|r 236 T--IVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRKDLYYRISVFLINISTLR 313 (482)
Q Consensus 236 t--l~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~~~~g~fr~dLy~rL~~~~i~iPpLR 313 (482)
T Consensus 124 ~~IvvLDEid~L~~~~~~~LY~L~r~~--------~~~~~~v~vi~i~n~~--~~--~~~ld~rv~s~l~~~~I~F~pY~ 191 (366)
T COG1474 124 TVIVILDEVDALVDKDGEVLYSLLRAP--------GENKVKVSIIAVSNDD--KF--LDYLDPRVKSSLGPSEIVFPPYT 191 (366)
T ss_pred EEEEEECCHHHHHCCCCCHHHHEECCC--------CCCCEEEEEEEEECCH--HH--HHHHHHHHHHCCCCCEEEECCCC
T ss_conf 599997647654154641455111247--------7675379999973548--89--99875667650687635528989
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC--CCCCCCCHHHHHHHHHHHHHHCC---CCCCCHHHHHHH
Q ss_conf 7442222556677764101122333321111100012--23389868999999999987438---981068895454
Q gi|254780916|r 314 SRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLT--KYPWIDNVQELKNILLRAVIGLK---DSHLTEDRFVLL 385 (482)
Q Consensus 314 eR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~--~y~WPGNvREL~n~i~r~~i~~~---~~~i~~~~~~~~ 385 (482)
T Consensus 192 a~-----el~~Il~~R~--~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe~~~~~~v~~~~v~~a 261 (366)
T COG1474 192 AE-----ELYDILRERV--EEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAEREGSRKVSEDHVREA 261 (366)
T ss_pred HH-----HHHHHHHHHH--HHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
T ss_conf 89-----9999999999--8540468748039999999887618647760899999999865407885370047889